-- dump date 20140619_115031 -- class Genbank::CDS -- table cds_note -- id note YP_004339043.1 COGs: COG0593 ATPase involved in DNA replication initiation; HAMAP: Chromosomal replication control, initiator DnaA; InterPro IPR013317; IPR013159; IPR001957; IPR003593; KEGG: cbh:CLC_0001 chromosomal replication initiation protein; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: Chromosomal replication control, initiator DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_004339044.1 KEGG: pfh:PFHG_04866 origin recognition complex 1 protein; SPTR: Asparagine-rich protein YP_004339045.1 COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR022634; IPR022637; IPR022635; IPR001001; KEGG: tle:Tlet_0486 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain, central; DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, C-terminal; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta chain; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit YP_004339046.1 COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); InterPro IPR003395; KEGG: tte:TTE0004 recombination protein F; PFAM: RecF/RecN/SMC; SPTR: Recombinational DNA repair ATPase (RecF pathway)-like; PFAM: RecF/RecN/SMC N terminal domain YP_004339047.1 COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594; IPR013506; IPR002288; IPR001241; IPR 011557; KEGG: gur:Gura_0004 DNA gyrase, B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; DNA topoisomerase, type IIA, subunit B, C-terminal; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, subunit B; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit YP_004339048.1 COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205; IPR006691; IPR005743; KEGG: ddf:DEFDS_0004 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: DNA gyrase subunit A; TIGRFAM: DNA gyrase, subunit A; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit YP_004339049.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: ddf:DEFDS_0648 octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase; SPTR: Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase YP_004339050.1 COGs: COG0373 Glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; InterPro IPR015895; IPR006151; IPR015896; IPR000343; KEGG: gme:Gmet_3233 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain; PRIAM: Glutamyl-tRNA reductase; SPTR: Glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase YP_004339051.1 COGs: COG0181 Porphobilinogen deaminase; InterPro IPR022417; IPR022418; IPR000860; KEGG: hya:HY04AAS1_1237 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal domain; SPTR: Porphobilinogen deaminase; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase YP_004339052.1 COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: pmx:PERMA_1098 uroporphyrinogen-III synthase; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Uroporphyrinogen-III synthetase; PFAM: Uroporphyrinogen-III synthase HemD YP_004339053.1 COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: swo:Swol_0243 transketolase-like protein; PFAM: Transketolase, N-terminal; PRIAM: Transketolase; SPTR: Transketolase subunit A; PFAM: Transketolase, thiamine diphosphate binding domain YP_004339054.1 COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475; IPR005476; KEGG: cdf:CD3459 transketolase, pyridine binding subunit; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SMART: Transketolase-like, pyrimidine-binding domain; SPTR: Transketolase, pyridine binding subunit; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_004339055.1 COGs: COG2884 ATPase involved in cell division; InterPro IPR003439; KEGG: afl:Aflv_2559 cell division ATPase; PFAM: ABC transporter-like; SPTR: Cell division ATP-binding protein FtsE; PFAM: ABC transporter YP_004339056.1 InterPro IPR003838; KEGG: bfs:BF0066 putative cell division protein; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: Cell division protein FtsX; PFAM: Predicted permease YP_004339057.1 COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR009894; IPR016047; KEGG: tye:THEYE_A1482 peptidase M23B, putative; PFAM: Peptidase M23; Exported; SPTR: Putative uncharacterized protein; PFAM: Peptidase family M23 YP_004339058.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478; IPR005151; IPR004447; KEGG: ddf:DEFDS_1365 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004339059.1 COGs: COG2861 conserved hypothetical protein; InterPro IPR006837; KEGG: pca:Pcar_1672 hypothetical protein; PFAM: Protein of unknown function DUF610, YibQ; SPTR: Putative uncharacterized protein; PFAM: Divergent polysaccharide deacetylase YP_004339060.1 COGs: COG0533 Metal-dependent protease with possible chaperone activity; HAMAP: Peptidase M22, O-sialoglycoprotein peptidase; InterPro IPR000905; IPR022450; IPR017861; KEGG: taf:THA_650 putative DNA-binding/iron metalloprotein/AP endonuclease; PFAM: Peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Probable O-sialoglycoprotein endopeptidase; TIGRFAM: Peptidase M22, O-sialoglycoprotein peptidase; Peptidase M22, glycoprotease, subgroup; PFAM: Glycoprotease family; TIGRFAM: putative glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family YP_004339061.1 COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; IPR005881; KEGG: ddf:DEFDS_2169 serine O-acetyltransferase; PRIAM: Serine O-acetyltransferase; SPTR: Serine O-acetyltransferase; TIGRFAM: Serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase YP_004339062.1 COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; InterPro IPR002036; KEGG: bsu:BSU25320 putative metalloprotease; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; SPTR: Putative metalloprotease ThebaDRAFT_1316; TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family YP_004339063.1 COGs: COG1480 membrane-associated HD superfamily hydrolase; InterProIPR011624; IPR011621; IPR006674; IPR003607; IPR 006675; KEGG: sat:SYN_02793 metal-dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; Metal-dependent phosphohydrolase, 7TM extracellular domain; Metal-dependent phosphohydrolase, 7TM intracellular domain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: 7TM receptor with intracellular HD hydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: 7TM-HD extracellular; HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG YP_004339064.1 COGs: COG0519 GMP synthase PP-ATPase domain/subunit; HAMAP: GMP synthase; InterProIPR000991; IPR004506; IPR001674; IPR022955; IPR 004739; KEGG: ddf:DEFDS_0470 GMP synthase glutamine-hydrolyzing; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA-specific 2-thiouridylase; PRIAM: GMP synthase (glutamine-hydrolyzing); SPTR: GMP synthase [glutamine-hydrolyzing]; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit YP_004339065.1 COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: saf:SULAZ_1138 peptide maturation; PFAM: Peptidase U62, modulator of DNA gyrase; SPTR: Peptide maturation; PFAM: Putative modulator of DNA gyrase YP_004339066.1 COGs: COG0232 dGTP triphosphohydrolase; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase, type 2; InterPro IPR006674; IPR023023; IPR003607; IPR006261; KEGG: tye:THEYE_A0539 deoxyguanosinetriphosphate triphosphohydrolase-like protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Deoxyguanosinetriphosphate triphosphohydrolase-like protein; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative YP_004339067.1 KEGG: mev:Metev_1800 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339068.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterProIPR013848; IPR007197; IPR002792; IPR006463; IPR 006638; IPR005839; KEGG: ddf:DEFDS_1391 tRNA-i(6)A37 thiotransferase enzyme; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: tRNA-i(6)A37 thiotransferase enzyme; TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family YP_004339069.1 COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: tmt:Tmath_1104 aminodeoxychorismate lyase; PFAM: Uncharacterised protein family UPF0755; SPTR: Aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family YP_004339070.1 COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); HAMAP: Resolvase, holliday junction-type, YqgF-like; InterPro IPR005227; IPR006641; KEGG: tro:trd_0729 conserved hypothetical protein TIGR00250; PFAM: Resolvase, holliday junction-type, YqgF-like; SMART: Resolvase, RNase H-like fold; SPTR: Putative Holliday junction resolvase; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF YP_004339071.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: ant:Arnit_0915 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004339072.1 COGs: COG0077 Prephenate dehydratase; InterPro IPR020822; IPR001086; IPR002912; IPR002701; KEGG: tal:Thal_0929 prephenate dehydratase; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; SMART: Chorismate mutase; SPTR: Prephenate dehydratase; PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II YP_004339073.1 COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; InterPro IPR001095; KEGG: ddf:DEFDS_1173 acetyl-CoA carboxylase carboxyl transferase subunit alpha; PFAM: Acetyl-CoA carboxylase, alpha subunit; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit YP_004339074.1 COGs: COG0527 Aspartokinase; InterPro IPR001048; IPR002912; IPR005260; IPR001341; KEGG: tye:THEYE_A1522 asparate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; SPTR: Aspartokinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase YP_004339075.1 COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543; IPR018541; IPR003593; KEGG: nis:NIS_0826 cell division protein FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core; SPTR: Cell division protein FtsK; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family YP_004339076.1 COGs: COG0595 hydrolase of the metallo-beta-lactamase superfamily; InterPro IPR001279; IPR011108; IPR004613; KEGG: slp:Slip_1027 RNA-metabolising metallo-beta-lactamase; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like; SPTR: RNA-metabolising metallo-beta-lactamase; TIGRFAM: Ribonuclease J; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein YP_004339077.1 COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR001737; IPR020598; IPR011530; KEGG: tpt:Tpet_1357 dimethyladenosine transferase; PFAM: Ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; SPTR: Ribosomal RNA small subunit methyltransferase A; TIGRFAM: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_004339078.1 COGs: COG1995 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; InterPro IPR005255; KEGG: toc:Toce_0654 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase YP_004339079.1 COGs: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); InterPro IPR002942; KEGG: str:Sterm_0093 RNA-binding S4 domain protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; SPTR: S4 domain protein; PFAM: S4 domain YP_004339080.1 InterPro IPR015391; IPR000297; KEGG: sat:SYN_02487 peptidyl-prolyl cis-trans isomerase; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain YP_004339081.1 COGs: COG3481 HD-superfamily hydrolase; InterPro IPR004365; IPR006674; IPR003607; IPR006675; KEGG: gbm:Gbem_1665 3'-to-5' exonuclease YhaM; PFAM: Metal-dependent phosphohydrolase, HD subdomain; Nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HD domain; OB-fold nucleic acid binding domain; TIGRFAM: uncharacterized domain HDIG YP_004339082.1 COGs: COG0125 Thymidylate kinase; HAMAP: Thymidylate kinase; InterPro IPR018094; KEGG: dth:DICTH_0630 thymidylate kinase; PFAM: Thymidylate kinase; PRIAM: dTMP kinase; SPTR: Thymidylate kinase; TIGRFAM: Thymidylate kinase; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase YP_004339083.1 KEGG: nam:NAMH_1212 DNA polymerase III delta prime subunit HolB; SPTR: DNA polymerase III subunit delta' YP_004339084.1 COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: ctc:CTC00222 tpl protein; PFAM: PSP1, C-terminal; SPTR: PSP1 domain protein; PFAM: PSP1 C-terminal conserved region YP_004339085.1 COGs: COG0143 Methionyl-tRNA synthetase; HAMAP: Methionyl-tRNA synthetase, class Ia; InterPro IPR015413; IPR002547; IPR014758; IPR004495; KEGG: tai:Taci_1196 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; PRIAM: Methionine--tRNA ligase; SPTR: Methionyl-tRNA synthetase; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; PFAM: Anticodon-binding domain; tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase YP_004339086.1 KEGG: tnp:Tnap_0536 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339087.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439; IPR003593; KEGG: ddf:DEFDS_0658 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004339088.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439; IPR003593; KEGG: ddf:DEFDS_0657 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_004339089.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: ddf:DEFDS_0656 branched-chain amino acid ABC transporter permease; PFAM: ABC transporter permease; SPTR: Branched-chain amino acid ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component YP_004339090.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: ddf:DEFDS_0655 branched-chain amino acid ABC transporter permease; PFAM: ABC transporter permease; SPTR: Branched-chain amino acid ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component YP_004339091.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: ddf:DEFDS_0654 branched-chain amino acid ABC transporter substrate-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Branched-chain amino acid ABC transporter, substrate-binding protein; PFAM: Receptor family ligand binding region YP_004339092.1 KEGG: dka:DKAM_0251 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0066 YP_004339093.1 COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: fps:FP0159 ATP-dependent DNA helicase UvrD; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; PFAM: UvrD/REP helicase YP_004339094.1 COGs: COG3893 Inactivated superfamily I helicase; KEGG: fbc:FB2170_06515 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339095.1 KEGG: nhl:Nhal_2841 transposase IS4 family protein; SPTR: Transposase IS4 family protein YP_004339096.1 KEGG: fjo:Fjoh_1181 S23 ribosomal protein; SPTR: S23 ribosomal; PFAM: S23 ribosomal protein YP_004339097.1 COGs: COG0529 Adenylylsulfate kinase and related kinase; InterPro IPR018638; IPR002891; KEGG: sua:Saut_0263 adenylylsulfate kinase; PFAM: Adenylylsulphate kinase, C-terminal; Protein of unknown function DUF2061, membrane; PRIAM: Adenylyl-sulfate kinase; SPTR: Adenylyl-sulfate kinase; TIGRFAM: Adenylylsulphate kinase, C-terminal; PFAM: Predicted membrane protein (DUF2061); Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK) YP_004339098.1 InterPro IPR008815; KEGG: sun:SUN_0718 S23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein; PFAM: S23 ribosomal protein YP_004339099.1 COGs: COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; InterPro IPR000760; IPR006240; KEGG: pmx:PERMA_1987 3'(2'),5'-bisphosphate nucleotidase; PFAM: Inositol monophosphatase; SPTR: 3'(2'),5'-bisphosphate nucleotidase; TIGRFAM: 3(2),5 -bisphosphate nucleotidase, bacterial; PFAM: Inositol monophosphatase family; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase, bacterial YP_004339100.1 COGs: COG0529 Adenylylsulfate kinase and related kinase; HAMAP: Adenylylsulphate kinase, C-terminal; InterPro IPR002891; KEGG: ant:Arnit_2077 adenylylsulfate kinase; PFAM: Adenylylsulphate kinase, C-terminal; PRIAM: Adenylyl-sulfate kinase; SPTR: Adenylyl-sulfate kinase; TIGRFAM: Adenylylsulphate kinase, C-terminal; PFAM: Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK) YP_004339101.1 KEGG: gur:Gura_1699 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436 YP_004339102.1 InterPro IPR013159; KEGG: gur:Gura_3020 hypothetical protein; PFAM: Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal; SPTR: Putative uncharacterized protein; PFAM: domain; Transposase IS200 like YP_004339103.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: cts:Ctha_0890 integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: integron integrase YP_004339104.1 KEGG: sil:SPO1925 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339105.1 COGs: COG1484 DNA replication protein; InterPro IPR002611; IPR003593; KEGG: lpp:plpp0021 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: IstB-like ATP binding protein YP_004339106.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sul:SYO3AOP1_1122 transposase mutator type; PFAM: Transposase, mutator type; SPTR: Transposase mutator type; PFAM: Transposase, Mutator family YP_004339107.1 COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: tte:TTE0752 hypothetical protein; PFAM: Protein of unknown function DUF86; SPTR: UPF0331 protein TTE0752; PFAM: Protein of unknown function DUF86 YP_004339108.1 InterPro IPR008201; KEGG: ddf:DEFDS_2017 hypothetical protein; PFAM: Protein of unknown function DUF86; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF86 YP_004339109.1 InterPro IPR002934; KEGG: ddf:DEFDS_2018 hypothetical protein; PFAM: Nucleotidyl transferase domain; SPTR: Putative uncharacterized protein; PFAM: Nucleotidyltransferase domain YP_004339110.1 COGs: COG2038 NaMN:DMB phosphoribosyltransferase; HAMAP: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; InterPro IPR003200; IPR017846; KEGG: ddf:DEFDS_2050 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like; PRIAM: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; SPTR: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:Nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_004339111.1 COGs: COG0368 Cobalamin-5-phosphate synthase; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; InterPro IPR003805; KEGG: ddf:DEFDS_2049 adenosylcobinamide-GDP ribazoletransferase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; SPTR: Cobalamin synthase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase YP_004339112.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: ddf:DEFDS_2048 L-threonine-O-3-phosphate decarboxylase; PFAM: Aminotransferase, class I/classII; PRIAM: Histidinol-phosphate transaminase; SPTR: L-threonine-O-3-phosphate decarboxylase; PFAM: Aminotransferase class I and II YP_004339113.1 COGs: COG1492 Cobyric acid synthase; HAMAP: Cobyric acid synthase CobQ; InterPro IPR002586; IPR011698; IPR004459; KEGG: ddf:DEFDS_2047 adenosylcobyric acid synthase (glutamine-hydrolyzing); PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ-like glutamine amidotransferase; SPTR: Cobyric acid synthase; TIGRFAM: Cobyric acid synthase CobQ; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyric acid synthase CobQ YP_004339114.1 COGs: COG1270 Cobalamin biosynthesis protein CobD/CbiB; HAMAP: Cobalamin biosynthesis CobD/CbiB; InterPro IPR004485; KEGG: dap:Dacet_0151 cobalamin biosynthesis protein CobD; PFAM: Cobalamin biosynthesis CobD/CbiB; SPTR: Cobalamin biosynthesis protein CobD; TIGRFAM: Cobalamin biosynthesis CobD/CbiB; PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD YP_004339115.1 COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192; IPR008279; IPR000121; IPR006319; KEGG: mbu:Mbur_0799 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme; PRIAM: Pyruvate, water dikinase; SPTR: Phosphoenolpyruvate synthase; TIGRFAM: Phosphoenolpyruvate synthase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: phosphoenolpyruvate synthase YP_004339116.1 COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: ddf:DEFDS_1103 peptidase U62, modulator of DNA gyrase; PFAM: Peptidase U62, modulator of DNA gyrase; SPTR: Peptidase U62, modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase YP_004339117.1 COGs: COG0101 Pseudouridylate synthase; HAMAP: Pseudouridine synthase I, TruA; InterPro IPR020097; IPR001406; KEGG: tye:THEYE_A1546 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; PRIAM: tRNA-pseudouridine synthase I; SPTR: tRNA-pseudouridine synthase I; TIGRFAM: Pseudouridine synthase I, TruA; manually curated; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_004339118.1 COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; HAMAP: Glu-tRNAGln amidotransferase, C subunit; InterPro IPR003837; KEGG: tye:THEYE_A1873 glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit YP_004339119.1 COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; InterPro IPR000120; IPR004412; KEGG: chd:Calhy_1927 glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit YP_004339120.1 KEGG: cbl:CLK_0823 putative ABC transporter, permease protein; SPTR: Putative ABC transporter, permease protein YP_004339121.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744; KEGG: tma:TM0487 hypothetical protein; PFAM: Domain of unknown function DUF59; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF59 YP_004339122.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: str:Sterm_3100 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2 YP_004339123.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: cha:CHAB381_0663 polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase YP_004339124.1 COGs: COG1584 membrane protein; InterPro IPR000791; KEGG: ddc:Dd586_3595 GPR1/FUN34/YaaH family protein; PFAM: GPR1/FUN34/yaaH; SPTR: Inner membrane protein YaaH; PFAM: GPR1/FUN34/yaaH family YP_004339125.1 InterPro IPR001387; IPR013096; KEGG: ddf:DEFDS_1061 transcriptional regulator; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix YP_004339126.1 COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; HAMAP: rRNA small subunit methyltransferase G; InterPro IPR003682; KEGG: tye:THEYE_A0584 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: rRNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB YP_004339127.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: Glucose-inhibited division protein A; InterPro IPR002218; IPR004416; KEGG: tye:THEYE_A0585 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A YP_004339128.1 COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR018948; IPR002917; IPR004520; IPR005225; KEGG: aae:aq_871 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase mnmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE YP_004339129.1 COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane insertion protein, OxaA/YidC, bacterial; InterPro IPR001708; IPR019998; KEGG: ddf:DEFDS_0349 preprotein translocase YidC subunit; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein oxaA; TIGRFAM: Membrane insertion protein, OxaA/YidC; Membrane insertion protein, OxaA/YidC, bacterial; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain YP_004339130.1 COGs: COG0759 conserved hypothetical protein; HAMAP: Protein of unknown function DUF37; InterPro IPR002696; KEGG: tpd:Teth39_2293 hypothetical protein; PFAM: Protein of unknown function DUF37; SPTR: Putative uncharacterized protein; TIGRFAM: Protein of unknown function DUF37; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD YP_004339131.1 COGs: COG0594 RNase P protein component; HAMAP: Ribonuclease P; InterPro IPR000100; KEGG: sth:STH3340 ribonuclease P protein component; PFAM: Ribonuclease P; SPTR: Ribonuclease P protein component; TIGRFAM: Ribonuclease P; manually curated; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial YP_004339132.1 HAMAP: Ribosomal protein L34; InterPro IPR000271; KEGG: sun:SUN_1573 50S ribosomal protein L34; PFAM: Ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type YP_004339133.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: dak:DaAHT2_0960 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase YP_004339134.1 KEGG: tye:THEYE_A0839 molybdopterin converting factor, subunit 2; SPTR: Molybdopterin converting factor, subunit 2; PFAM: MoaE protein YP_004339135.1 COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR007197; KEGG: hth:HTH_0327 L-lysine 2,3-aminomutase; PFAM: Radical SAM; PRIAM: Lysine 2,3-aminomutase; SPTR: L-lysine 2,3-aminomutase; PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein YP_004339136.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439; IPR003593; KEGG: amt:Amet_1587 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter YP_004339137.1 COGs: COG0390 ABC-type uncharacterized transport system permease component; InterPro IPR005226; KEGG: ddf:DEFDS_1870 ABC transporter permease; PFAM: Conserved hypothetical protein CHP00245; SPTR: ABC transporter, permease; TIGRFAM: Conserved hypothetical protein CHP00245; PFAM: Uncharacterised protein family (UPF0014); TIGRFAM: conserved hypothetical protein TIGR00245 YP_004339138.1 COGs: COG0281 Malic enzyme; InterPro IPR012301; IPR012302; IPR002505; KEGG: gsu:GSU1700 malic enzyme; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; SMART: Malic enzyme, NAD-binding; SPTR: Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase; PFAM: Malic enzyme, NAD binding domain; Phosphate acetyl/butaryl transferase; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase YP_004339139.1 COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; IPR004682; KEGG: ddf:DEFDS_0682 C4-dicarboxylate transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 7, bacteria; SPTR: C4-dicarboxylate transporter, substrate-binding protein; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family YP_004339140.1 COGs: COG3090 TRAP-type C4-dicarboxylate transport system small permease component; InterPro IPR007387; KEGG: ddf:DEFDS_0683 C4-dicarboxylate transporter small subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; SPTR: C4-dicarboxylate transporter, small subunit; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component YP_004339141.1 COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR010656; IPR004681; KEGG: ddf:DEFDS_0684 C4-dicarboxylate transporter large subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: C4-dicarboxylate transporter, large subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit YP_004339142.1 COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: gme:Gmet_0239 CMP/dCMP deaminase, zinc-binding protein; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase, zinc-binding protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004339143.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR001667; IPR003156; IPR000644; IPR002646; KEGG: ddf:DEFDS_1077 polyA polymerase family protein; PFAM: Poly A polymerase, head domain; Cystathionine beta-synthase, core; Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: PolyA polymerase family protein; PFAM: DHH family; DHHA1 domain; CBS domain; Poly A polymerase head domain YP_004339144.1 COGs: COG0603 PP-loop superfamily ATPase; InterPro IPR018317; KEGG: abi:Aboo_0657 ExsB protein; PFAM: Queuosine synthesis; SPTR: 7-cyano-7-deazaguanine synthase; TIGRFAM: Queuosine synthesis; PFAM: ExsB; TIGRFAM: exsB protein YP_004339145.1 COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: aae:aq_2035 hypothetical protein; PFAM: Radical SAM; SPTR: Putative uncharacterized protein; PFAM: Radical SAM superfamily YP_004339146.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR013163; IPR003660; IPR000160; KEGG: gur:Gura_3308 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; Cache, type 2; HAMP linker domain; PRIAM: Diguanylate kinase; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: HAMP domain; Cache domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004339147.1 COGs: COG1490 D-Tyr-tRNAtyr deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: taf:THA_1655 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004339148.1 KEGG: abc:ACICU_03036 hypothetical protein; SPTR: Predicted protein YP_004339149.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; HAMAP: ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro IPR001509; IPR011912; KEGG: bhy:BHWA1_00678 ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: ADP-glyceromanno-heptose 6-epimerase; SPTR: ADP-L-glycero-D-manno-heptose-6-epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase YP_004339150.1 KEGG: ddf:DEFDS_2033 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: FecR protein YP_004339151.1 COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: dtu:Dtur_1669 non-specific serine/threonine protein kinase; PFAM: Protease inhibitor I4, serpin; SMART: Protease inhibitor I4, serpin; SPTR: Non-specific serine/threonine protein kinase; PFAM: Serpin (serine protease inhibitor) YP_004339152.1 InterPro IPR010652; KEGG: sub:SUB1013 membrane protein; PFAM: Protein of unknown function DUF1232; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1232) YP_004339153.1 KEGG: dsa:Desal_3129 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1318) YP_004339154.1 KEGG: sat:SYN_00612 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339155.1 KEGG: pub:SAR11_0734 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339156.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; IPR001808; KEGG: ddf:DEFDS_1546 CRP/FNR family transcriptional regulator, anaerobic regulatory protein; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SPTR: CRP/FNR family transcriptional regulator, anaerobic regulatory protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_004339157.1 COGs: COG1151 6Fe-6S prismane cluster-containing protein; HAMAP: Hybrid cluster protein; InterPro IPR004137; IPR010048; KEGG: mvu:Metvu_1692 hydroxylamine reductase; PFAM: Prismane; SPTR: Hybrid cluster protein; TIGRFAM: Hybrid cluster protein; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: hydroxylamine reductase YP_004339158.1 COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; InterPro IPR003358; KEGG: nam:NAMH_0517 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; SPTR: tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N-7) methyltransferase; PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase YP_004339159.1 COGs: COG0137 Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; InterPro IPR001518; KEGG: aar:Acear_1532 argininosuccinate synthase; PFAM: Argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase YP_004339160.1 COGs: COG0078 Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; InterPro IPR006132; IPR006131; IPR002292; KEGG: afl:Aflv_2146 ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; PRIAM: Ornithine carbamoyltransferase; SPTR: Ornithine carbamoyltransferase; TIGRFAM: Ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase YP_004339161.1 COGs: COG2014 conserved hypothetical protein; InterPro IPR007161; KEGG: ppd:Ppro_1948 hypothetical protein; PFAM: Protein of unknown function DUF364; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF364) YP_004339162.1 InterPro IPR013766; KEGG: ttm:Tthe_1987 thioredoxin domain; PFAM: Thioredoxin domain; SPTR: Thioredoxin domain; PFAM: Thioredoxin YP_004339163.1 InterPro IPR001450; KEGG: aoe:Clos_0209 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S binding domain; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain YP_004339164.1 InterPro IPR001387; IPR013096; KEGG: ddf:DEFDS_1061 transcriptional regulator; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix YP_004339165.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439; IPR003593; KEGG: kol:Kole_1106 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter YP_004339166.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439; IPR003593; KEGG: chy:CHY_2229 high affinity branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: High affinity branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_004339167.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: sdl:Sdel_0477 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component YP_004339168.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: ant:Arnit_1387 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component YP_004339169.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tnp:Tnap_1630 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region YP_004339170.1 COGs: COG1038 Pyruvate carboxylase; InterProIPR005481; IPR005479; IPR005482; IPR000891; IPR 003379; IPR000089; IPR005930; KEGG: ddf:DEFDS_1275 pyruvate carboxylase; PFAM: Carboxylase, conserved domain; Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Pyruvate carboxyltransferase; Biotin/lipoyl attachment; PRIAM: Pyruvate carboxylase; SMART: Biotin carboxylase, C-terminal; SPTR: Pyruvate carboxylase; TIGRFAM: Pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; HMGL-like; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin-requiring enzyme; Conserved carboxylase domain; TIGRFAM: pyruvate carboxylase YP_004339171.1 COGs: COG0474 Cation transport ATPase; InterProIPR004014; IPR008250; IPR005834; IPR006534; IPR 001757; KEGG: sua:Saut_1355 plasma-membrane proton-efflux P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; PRIAM: Proton-exporting ATPase; SMART: ATPase, P-type cation-transporter, N-terminal; SPTR: Plasma-membrane proton-efflux P-type ATPase; TIGRFAM: ATPase, P-type, plasma-membrane proton-efflux; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; Cation transporter/ATPase, N-terminus; haloacid dehalogenase-like hydrolase; TIGRFAM: plasma-membrane proton-efflux P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004339172.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439; IPR003593; KEGG: gmc:GY4MC1_3855 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative molybdate ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004339173.1 COGs: COG0039 Malate/lactate dehydrogenase; HAMAP: Malate dehydrogenase, NAD-dependent; InterPro IPR001236; IPR022383; IPR011275; KEGG: rmr:Rmar_0912 malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal; PRIAM: Malate dehydrogenase; SPTR: Malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent YP_004339174.1 COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain; InterPro IPR004646; KEGG: chy:CHY_1375 fumarate hydratase; PFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; PRIAM: Fumarate hydratase; SPTR: Tartrate dehydratase subunit alpha; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; PFAM: Fumarate hydratase (Fumerase); Fungal chitosanase; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region YP_004339175.1 COGs: COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I C-terminal domain; InterPro IPR004647; KEGG: nam:NAMH_1232 C-terminal fumarate hydratase, class I; PFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; PRIAM: Fumarate hydratase; SPTR: C-terminal fumarate hydratase, class I; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; PFAM: Fumarase C-terminus; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region YP_004339176.1 InterPro IPR000701; IPR014314; KEGG: dbr:Deba_1091 succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit; SPTR: Succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit YP_004339177.1 COGs: COG2142 Succinate dehydrogenase hydrophobic anchor subunit; InterPro IPR000701; IPR014312; KEGG: dbr:Deba_1090 succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit; SPTR: Succinate dehydrogenase, hydrophobic membrane anchor protein; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein YP_004339178.1 COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953; IPR004112; IPR011281; IPR014006; KEGG: ddf:DEFDS_0686 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: Succinate dehydrogenase (ubiquinone); SPTR: Succinate dehydrogenase, flavoprotein subunit; TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup YP_004339179.1 COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR004489; KEGG: dbr:Deba_1088 succinate dehydrogenase and fumarate reductase iron-sulfur protein; PRIAM: Succinate dehydrogenase (ubiquinone); SPTR: Succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004339180.1 COGs: COG1570 Exonuclease VII large subunit; HAMAP: Exonuclease VII, large subunit; InterPro IPR004365; IPR020579; IPR003753; KEGG: kko:Kkor_1832 exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: Exodeoxyribonuclease 7 large subunit; TIGRFAM: Exonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit YP_004339181.1 COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Bacterial DNA recombination protein RuvA; InterProIPR013849; IPR000445; IPR011114; IPR000085; IPR 003583; KEGG: dap:Dacet_0475 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; Helix-hairpin-helix motif; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit YP_004339182.1 COGs: COG2956 N-acetylglucosaminyl transferase; InterPro IPR001440; IPR019734; KEGG: dbr:Deba_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat YP_004339183.1 KEGG: ddf:DEFDS_0190 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1049) YP_004339184.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: fpl:Ferp_0691 histidine triad (HIT) protein; PFAM: Histidine triad (HIT) protein; SPTR: Histidine triad (HIT) protein; PFAM: HIT domain YP_004339185.1 COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: cob:COB47_1050 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: Phenylacetate--CoA ligase; PFAM: AMP-binding enzyme YP_004339186.1 COGs: COG4747 ACT domain-containing protein; InterPro IPR002912; KEGG: ddf:DEFDS_0963 hypothetical protein; PFAM: Amino acid-binding ACT; SPTR: Putative uncharacterized protein; PFAM: ACT domain YP_004339187.1 COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR010656; IPR004681; KEGG: dal:Dalk_0471 TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit YP_004339188.1 COGs: COG3090 TRAP-type C4-dicarboxylate transport system small permease component; InterPro IPR007387; KEGG: dat:HRM2_48180 putative TRAP-type C4-dicarboxylate transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; SPTR: Putative TRAP-type C4-dicarboxylate transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component YP_004339189.1 COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; IPR004682; KEGG: dvm:DvMF_2135 TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; SPTR: TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family YP_004339190.1 KEGG: tye:THEYE_A0897 thiol:disulfide interchange protein, putative; SPTR: Thiol:disulfide interchange protein, putative YP_004339191.1 KEGG: tet:TTHERM_00077510 transporter, cation channel family protein; SPTR: Transporter, cation channel family protein YP_004339192.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269; KEGG: nis:NIS_1194 tRNA-dihydrouridine synthase; PFAM: tRNA-dihydrouridine synthase; SPTR: tRNA-dihydrouridine synthase; manually curated; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: putative TIM-barrel protein, nifR3 family YP_004339193.1 COGs: COG1158 Transcription termination factor; InterProIPR011112; IPR011113; IPR000194; IPR011129; IPR 003593; IPR004665; KEGG: aba:Acid345_3229 transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; SMART: Cold shock protein; Rho termination factor, N-terminal; ATPase, AAA+ type, core; SPTR: Transcription termination factor Rho; TIGRFAM: Transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho YP_004339194.1 KEGG: dsa:Desal_0023 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339195.1 COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020828; IPR020829; IPR006424; KEGG: ddf:DEFDS_1893 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; SPTR: Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_004339196.1 COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: pmx:PERMA_0227 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_004339197.1 COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: pmo:Pmob_1444 bifunctional phosphoglycerate kinase/triosephosphate isomerase; PFAM: Triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_004339198.1 InterPro IPR004692; KEGG: gur:Gura_2058 preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; SPTR: Protein translocase subunit secG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_004339199.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: tye:THEYE_A1146 oligopeptide-binding protein AppA; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Oligopeptide-binding protein AppA; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004339200.1 InterPro IPR018449; IPR001450; KEGG: dtu:Dtur_0733 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; PFAM: NIL domain; 4Fe-4S binding domain; SMART: NIL domain; SPTR: 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; PFAM: 4Fe-4S binding domain; NIL domain YP_004339201.1 COGs: COG2122 conserved hypothetical protein; InterPro IPR003374; KEGG: dae:Dtox_3586 ApbE family lipoprotein; PFAM: Thiamine synthesis ApbE/UPF0280; SPTR: ApbE family lipoprotein; PFAM: ApbE family YP_004339202.1 COGs: COG1900 conserved hypothetical protein; InterPro IPR002708; KEGG: sat:SYN_01778 putative cytoplasmic protein; PFAM: Domain of unknown function DUF39; SPTR: Hypothetical cytosolic protein; PFAM: Domain of unknown function DUF39 YP_004339203.1 COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR001608; IPR011078; KEGG: kol:Kole_0816 alanine racemase domain protein; PFAM: Alanine racemase, N-terminal; SPTR: Alanine racemase domain protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_004339204.1 COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: ddf:DEFDS_1406 isochorismatase hydrolase; PFAM: Isochorismatase-like; SPTR: Isochorismatase hydrolase; PFAM: Isochorismatase family YP_004339205.1 COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR022412; IPR002638; KEGG: ddf:DEFDS_1900 nicotinate phosphoribosyltransferase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal; PRIAM: Nicotinate phosphoribosyltransferase; SPTR: Quinolinate phosphoribosyl transferase, C-terminal domain protein; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: putative nicotinate phosphoribosyltransferase YP_004339206.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR001130; IPR015991; KEGG: aar:Acear_0054 hydrolase, TatD family; PFAM: Deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_004339207.1 InterPro IPR000326; KEGG: tye:THEYE_A0408 PAP2 superfamily protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: PAP2 superfamily protein; PFAM: PAP2 superfamily YP_004339208.1 COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: pla:Plav_1994 diacylglycerol kinase catalytic region; PFAM: Diacylglycerol kinase, catalytic domain; SPTR: Diacylglycerol kinase catalytic region; PFAM: Diacylglycerol kinase catalytic domain YP_004339209.1 COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; InterPro IPR001279; KEGG: deg:DehalGT_1421 metallo-beta-lactamase family protein; PFAM: Beta-lactamase-like; SPTR: Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily YP_004339210.1 COGs: COG0621 2-methylthioadenine synthetase; InterProIPR013848; IPR007197; IPR006638; IPR005839; IPR 006467; KEGG: aae:aq_474 hypothetical protein; PFAM: Radical SAM; Methylthiotransferase, N-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative methylthiotransferase aq_474; TIGRFAM: MiaB-like tRNA modifying enzyme; Methylthiotransferase; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family YP_004339211.1 COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; InterPro IPR000807; KEGG: cth:Cthe_2884 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase; PRIAM: Imidazoleglycerol-phosphate dehydratase; SPTR: Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase YP_004339212.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: ttm:Tthe_1312 polyprenyl synthetase; PFAM: Polyprenyl synthetase; PRIAM: Farnesyltranstransferase; SPTR: Polyprenyl synthetase; PFAM: Polyprenyl synthetase YP_004339213.1 HAMAP: Exonuclease VII, small subunit; InterPro IPR003761; KEGG: gbm:Gbem_1256 exodeoxyribonuclease VII small subunit; PFAM: Exonuclease VII, small subunit; SPTR: Exodeoxyribonuclease 7 small subunit; TIGRFAM: Exonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit YP_004339214.1 COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR001732; IPR014026; IPR014027; IPR017476; KEGG: sul:SYO3AOP1_1757 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004339215.1 COGs: COG1968 Uncharacterized bacitracin resistance protein; HAMAP: Bacitracin resistance protein BacA; InterPro IPR003824; KEGG: saf:SULAZ_0950 undecaprenyl-diphosphatase UppP; PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenyl-diphosphatase; TIGRFAM: Bacitracin resistance protein BacA; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_004339216.1 InterPro IPR000620; KEGG: dba:Dbac_0453 protein of unknown function DUF6 transmembrane; PFAM: Drug/metabolite transporter; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family YP_004339217.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506; KEGG: ddf:DEFDS_1156 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA-specific 2-thiouridylase; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA-specific 2-thiouridylase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_004339218.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; IPR001867; KEGG: dma:DMR_37840 OmpR family two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Response regulator receiver:Transcriptional regulatory protein, C-terminal; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004339219.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660; IPR003661; IPR003594; KEGG: mag:amb2894 signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: Signal transduction histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004339220.1 InterPro IPR011701; KEGG: sun:SUN_0278 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Putative uncharacterized protein; PFAM: Major Facilitator Superfamily YP_004339221.1 InterPro IPR001123; KEGG: cbe:Cbei_5090 lysine exporter protein LysE/YggA; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein (LYSE/YGGA); PFAM: LysE type translocator YP_004339222.1 KEGG: pbe:PB105150.00.0 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339223.1 COGs: COG3963 Phospholipid N-methyltransferase; KEGG: cbe:Cbei_2248 ribosomal RNA adenine dimethylase; SPTR: Ribosomal RNA adenine methylase transferase; PFAM: Methyltransferase small domain YP_004339224.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: aae:aq_1695a hypothetical protein; PFAM: Glycosyl transferase, family 39; SPTR: 3-dehydroquinate synthase; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004339225.1 COGs: COG2365 Protein tyrosine/serine phosphatase; InterPro IPR000326; KEGG: tye:THEYE_A0750 hypothetical protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Putative uncharacterized protein; PFAM: PAP2 superfamily; Tyrosine phosphatase family YP_004339226.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; IPR000326; KEGG: pin:Ping_1883 phosphoesterase, PA-phosphatase related; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SNARE associated Golgi protein; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase, PA-phosphatase related; PFAM: SNARE associated Golgi protein; PAP2 superfamily YP_004339227.1 InterPro IPR001123; KEGG: gct:GC56T3_1369 lysine exporter protein (LysE/YggA); PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein (LYSE/YGGA); PFAM: LysE type translocator YP_004339228.1 COGs: COG3963 Phospholipid N-methyltransferase; InterPro IPR013216; KEGG: cbe:Cbei_3305 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Ribosomal RNA adenine methylase transferase; PFAM: Methyltransferase domain YP_004339229.1 COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; InterPro IPR000644; IPR004097; KEGG: ddf:DEFDS_0204 inorganic diphosphatase; PFAM: Cystathionine beta-synthase, core; DHHA2; PRIAM: Inorganic diphosphatase; SMART: Cystathionine beta-synthase, core; SPTR: Inorganic diphosphatase; PFAM: DHH family; DRTGG domain; DHHA2 domain; CBS domain YP_004339230.1 KEGG: tva:TVAG_087250 Beige/BEACH domain containing protein; SPTR: SJCHGC06858 protein YP_004339231.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sul:SYO3AOP1_1122 transposase mutator type; PFAM: Transposase, mutator type; SPTR: Transposase mutator type; PFAM: Transposase, Mutator family YP_004339233.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: afn:Acfer_0298 glycosyl transferase family 39; PFAM: Glycosyl transferase, family 39; SPTR: Putative cell division ATP-binding protein FtsE; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004339234.1 KEGG: sat:SYN_02824 putative cytoplasmic protein; SPTR: Hypothetical cytosolic protein YP_004339235.1 COGs: COG3635 phosphoglycerate mutase AP superfamily; InterPro IPR019304; IPR006124; IPR013371; IPR004456; KEGG: mfv:Mfer_0422 phosphoglycerate mutase; PFAM: Bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme; PRIAM: Phosphoglycerate mutase; SPTR: Cofactor-independent phosphoglycerate mutase/phosphopentomutase; TIGRFAM: Homoserine kinase, putative; Cofactor-independent phosphoglycerate mutase, archaeal; PFAM: Metalloenzyme superfamily; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form; proposed homoserine kinase YP_004339236.1 COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: pmo:Pmob_0262 hypothetical protein; PFAM: Uncharacterised protein family UPF0047; SPTR: Secondary thiamine-phosphate synthase enzyme; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_004339237.1 COGs: COG0850 Septum formation inhibitor; HAMAP: Septum formation inhibitor MinC; InterPro IPR005526; IPR013033; KEGG: csc:Csac_1870 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC, C-terminal; SPTR: Probable septum site-determining protein minC; PFAM: Septum formation inhibitor MinC, C-terminal domain; TIGRFAM: septum site-determining protein MinC YP_004339238.1 COGs: COG2894 Septum formation inhibitor-activating ATPase; InterPro IPR002586; IPR010223; KEGG: cce:Ccel_2558 septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: septum site-determining protein MinD YP_004339239.1 COGs: COG0851 Septum formation topological specificity factor; HAMAP: Septum formation topological specificity factor MinE; InterPro IPR005527; KEGG: tin:Tint_0487 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; SPTR: Cell division topological specificity factor; TIGRFAM: Septum formation topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE YP_004339240.1 InterPro IPR000620; KEGG: wsu:WS0860 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family YP_004339241.1 COGs: COG2835 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0434/Trm112; InterPro IPR005651; KEGG: ddf:DEFDS_0512 hypothetical protein; PFAM: Uncharacterised protein family UPF0434/Trm112; SPTR: Putative uncharacterized protein; PFAM: Trm112p-like protein YP_004339242.1 KEGG: swo:Swol_1303 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2726) YP_004339243.1 COGs: COG2992 Uncharacterized FlgJ-related protein; InterPro IPR002901; IPR013338; KEGG: pmx:PERMA_0942 BAX protein; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme domain, subfamily 2; SPTR: BAX protein; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YP_004339244.1 COGs: COG0102 Ribosomal protein L13; InterPro IPR005822; IPR005823; KEGG: cdf:CD0104 50S ribosomal protein L13; PFAM: Ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type YP_004339245.1 COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: nis:NIS_1609 30S ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16 YP_004339246.1 COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; InterPro IPR000534; IPR012280; IPR000706; KEGG: aar:Acear_1552 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation domain; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SMART: Semialdehyde dehydrogenase, NAD-binding; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form YP_004339247.1 COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); HAMAP: Arginine biosynthesis protein ArgJ; InterPro IPR002813; KEGG: tit:Thit_2171 arginine biosynthesis bifunctional protein ArgJ; PFAM: Arginine biosynthesis protein ArgJ; PRIAM: Amino-acid N-acetyltransferase; SPTR: Putative uncharacterized protein; TIGRFAM: Arginine biosynthesis protein ArgJ; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase YP_004339248.1 InterPro IPR006683; KEGG: ddf:DEFDS_1231 hypothetical protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily YP_004339249.1 InterPro IPR002197; IPR001584; KEGG: csc:Csac_1822 hypothetical protein; PFAM: Helix-turn-helix, Fis-type; Integrase, catalytic core; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, Fis family; Integrase core domain YP_004339250.1 KEGG: bha:BH0827 fructose 1-phosphate kinase YP_004339251.1 COGs: COG0107 Imidazoleglycerol-phosphate synthase; HAMAP: Histidine biosynthesis, HisF; InterPro IPR006062; IPR004651; KEGG: cbb:CLD_2980 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: Histidine biosynthesis, HisF; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit YP_004339252.1 COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR001453; IPR020817; KEGG: ipo:Ilyop_2184 molybdopterin adenylyltransferase; PFAM: Molybdopterin binding; SMART: Molybdopterin binding; SPTR: Molybdenum cofactor synthesis protein; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain YP_004339253.1 COGs: COG2902 NAD-specific glutamate dehydrogenase; InterPro IPR007780; KEGG: ddf:DEFDS_1921 NAD-glutamate dehydrogenase; PFAM: Bacterial NAD-glutamate dehydrogenase; SPTR: NAD-glutamate dehydrogenase; PFAM: Bacterial NAD-glutamate dehydrogenase YP_004339254.1 COGs: COG1048 Aconitase A; InterPro IPR001030; IPR000573; IPR006250; KEGG: mtp:Mthe_0285 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: Aconitase; TIGRFAM: Aconitase, putative; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, putative, Aquifex type YP_004339255.1 COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; HAMAP: Signal transduction response regulator, chemotaxis, CheB; InterPro IPR001789; IPR000673; IPR008248; KEGG: ddf:DEFDS_0419 chemotaxis-specific methylesterase CheB; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Chemotaxis-specific methylesterase CheB; PFAM: CheB methylesterase; Response regulator receiver domain YP_004339256.1 COGs: COG1868 Flagellar motor switch protein; InterPro IPR001689; IPR001543; KEGG: ddf:DEFDS_0420 flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA); SPTR: Flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM YP_004339257.1 COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR001543; IPR012826; KEGG: hpj:jhp0394 flagellar motor switch protein FliY; PFAM: Surface presentation of antigen (SpoA); SPTR: Flagellar motor-switch protein; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN YP_004339258.1 COGs: COG1832 CoA-binding protein; InterPro IPR003781; KEGG: sus:Acid_6492 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding; SPTR: CoA-binding domain protein YP_004339259.1 COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR001986; IPR005750; KEGG: ddf:DEFDS_0102 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: Enolpyruvate transferase domain; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004339260.1 COGs: COG0040 ATP phosphoribosyltransferase; HAMAP: ATP phosphoribosyltransferase; InterPro IPR013820; KEGG: ttm:Tthe_0559 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic domain; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; PFAM: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase YP_004339261.1 COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122; IPR005273; KEGG: dth:DICTH_1285 DNA polymerase, bacteriophage-type; PFAM: Uracil-DNA glycosylase-like; SPTR: Putative uncharacterized protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4 YP_004339262.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: dat:HRM2_22120 PfkA1; SPTR: PfkA1 YP_004339263.1 COGs: COG0337 3-dehydroquinate synthetase; HAMAP: 3-dehydroquinate synthase AroB, subgroup; InterPro IPR002658; IPR016037; KEGG: pti:PHATRDRAFT_20809 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase YP_004339264.1 InterPro IPR001440; IPR013105; IPR019734; KEGG: gem:GM21_2659 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: Tetratricopeptide TPR_2 repeat protein YP_004339265.1 KEGG: sat:SYN_00425 hypothetical protein; SPTR: Hypothetical membrane protein YP_004339266.1 COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR001433; IPR019480; KEGG: mac:MA3786 ferredoxin-NADP(+) reductase subunit alpha; PFAM: Oxidoreductase FAD/NAD(P)-binding; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: Oxidoreductase, NAD-binding; PFAM: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain YP_004339267.1 COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027; IPR006004; KEGG: tmt:Tmath_2096 glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Glutamate synthase (NADPH); SPTR: Glutamate synthase (NADPH), homotetrameric; TIGRFAM: Glutamate synthase (NADPH), homotetrameric; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric YP_004339268.1 COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); InterPro IPR000440; KEGG: gsu:GSU0338 NADH dehydrogenase I subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_004339269.1 COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; HAMAP: NADH-ubiquinone oxidoreductase, 20 Kd subunit; InterPro IPR006137; IPR006138; KEGG: gsu:GSU0339 NADH dehydrogenase I subunit B; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B; TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit YP_004339270.1 COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; HAMAP: NADH dehydrogenase, subunit C; InterPro IPR001268; IPR010218; KEGG: tye:THEYE_A0913 NADH-quinone oxidoreductase chain C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH-quinone oxidoreductase subunit C 1; TIGRFAM: NADH dehydrogenase, subunit C; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C YP_004339271.1 COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; HAMAP: NAD(P)H-quinone oxidoreductase subunit D/H; InterPro IPR001135; IPR022885; IPR010219; KEGG: ddf:DEFDS_1982 NADH-quinone oxidoreductase subunit D; PFAM: NADH-quinone oxidoreductase, subunit D; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, D subunit; TIGRFAM: NADH dehydrogenase I, subunit D; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NADH dehydrogenase I, D subunit YP_004339272.1 COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterProIPR001041; IPR019574; IPR001450; IPR006963; IPR 006656; IPR006657; KEGG: gme:Gmet_3022 Fe(III) reductase subunit alpha; PFAM: Ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; 4Fe-4S binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; PRIAM: NADH dehydrogenase (quinone); SMART: Molybdopterin oxidoreductase, Fe4S4 domain; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; SPTR: Fe(III) reductase, alpha subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Molybdopterin oxidoreductase Fe4S4 domain YP_004339273.1 COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR001694; KEGG: ddf:DEFDS_1978 NADH-quinone oxidoreductase subunit H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, H subunit; PFAM: NADH dehydrogenase YP_004339274.1 COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); HAMAP: NADH-quinone oxidoreductase, chain I; InterPro IPR001450; IPR010226; KEGG: geo:Geob_0470 NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S binding domain; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit I 1; TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I YP_004339275.1 COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: nde:NIDE0606 NADH-quinone oxidoreductase membrane subunit J; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; SPTR: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004339276.1 COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; InterPro IPR001133; KEGG: geo:Geob_0472 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; SPTR: NADH-quinone oxidoreductase subunit K 2; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YP_004339277.1 COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516; IPR001750; IPR003945; KEGG: tye:THEYE_A0919 NADH-quinone oxidoreductase chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase chain l; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L YP_004339278.1 COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR001750; IPR010227; KEGG: tye:THEYE_A0920 NADH-quinone oxidoreductase chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: Similar to NADH:ubiquinone oxidoreductase subunit M; TIGRFAM: NADH-quinone oxidoreductase, chain M/4; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M YP_004339279.1 COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; InterPro IPR001750; IPR010096; KEGG: gem:GM21_3997 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit N 2; TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N YP_004339280.1 COGs: COG4992 Ornithine/acetylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; InterPro IPR005814; IPR004636; KEGG: sul:SYO3AOP1_1094 acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Acetylornithine aminotransferase; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases YP_004339281.1 COGs: COG1267 Phosphatidylglycerophosphatase A and related protein; InterPro IPR007686; KEGG: cpc:Cpar_1697 phosphatidylglycerophosphatase A; PFAM: Phosphatidylglycerophosphatase A; SPTR: Putative phosphatidylglycerophosphatase A; PFAM: Phosphatidylglycerophosphatase A YP_004339282.1 COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR008136; KEGG: hth:HTH_1909 hypothetical protein; PFAM: CinA, C-terminal; SPTR: Putative uncharacterized protein; TIGRFAM: CinA, C-terminal; PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain YP_004339283.1 COGs: COG1514 2'-5' RNA ligase; InterPro IPR014051; IPR004175; KEGG: tga:TGAM_0420 2'-5' RNA ligase (LigT); PFAM: Phosphoesterase, HXTX; SPTR: 2'-5' RNA ligase (LigT); TIGRFAM: 2',5' RNA ligase; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase YP_004339284.1 COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR013765; IPR003593; KEGG: dae:Dtox_3103 RecA protein; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: Protein recA; TIGRFAM: DNA recombination and repair protein RecA; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_004339285.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482; IPR003593; IPR006321; KEGG: ddf:DEFDS_0037 twitching motility protein PilT; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Twitching motility protein PilT; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_004339286.1 COGs: COG2137 conserved hypothetical protein; HAMAP: Regulatory protein RecX; InterPro IPR003783; KEGG: asu:Asuc_0260 recombination regulator RecX; PFAM: Regulatory protein RecX; SPTR: Regulatory protein recX; PFAM: RecX family YP_004339287.1 COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR018164; IPR012947; IPR003156; IPR002318; KEGG: ddf:DEFDS_1463 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; SMART: Threonyl/alanyl tRNA synthetase, SAD; SPTR: Alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase YP_004339288.1 KEGG: gtn:GTNG_1651 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339289.1 COGs: COG1355 dioxygenase; InterPro IPR002737; KEGG: aae:aq_890 hypothetical protein; PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo-related); SPTR: UPF0103 protein aq_890; PFAM: Memo-like protein YP_004339290.1 InterPro IPR004477; KEGG: ftn:FTN_0155 competence protein; PFAM: ComEC/Rec2-related protein; SPTR: Putative uncharacterized protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein YP_004339291.1 COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: mfs:MFS40622_0908 protein of unknown function DUF62; PFAM: Protein of unknown function DUF62; SPTR: Putative uncharacterized protein; PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase YP_004339292.1 COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR001440; IPR019734; KEGG: pmx:PERMA_0798 TPR domain containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004339293.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR008824; IPR003959; IPR008823; IPR004605; IPR 003593; KEGG: ttm:Tthe_1566 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit YP_004339294.1 COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942; IPR006145; IPR000748; KEGG: saf:SULAZ_0545 ribosomal large subunit pseudouridine synthase B; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase YP_004339295.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR007127; IPR009042; IPR007627; IPR007624; IPR 007630; IPR014284; IPR012760; KEGG: gsu:GSU3089 RNA polymerase sigma factor RpoD; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 factor, region 1.1; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain YP_004339296.1 COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: nam:NAMH_1317 hypothetical protein; PFAM: Domain of unknown function DUF218; SPTR: Putative uncharacterized protein; manually curated; PFAM: DUF218 domain YP_004339297.1 COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: sua:Saut_0940 hypothetical protein; PFAM: Protein of unknown function DUF342; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF342) YP_004339298.1 InterPro IPR003856; KEGG: nam:NAMH_1653 chain length determinant protein; PFAM: Lipopolysaccharide biosynthesis; SPTR: Chain length determinant protein; PFAM: Chain length determinant protein YP_004339299.1 KEGG: gfo:GFO_2030 glycosyl transferase family protein; SPTR: Transcriptional regulator YP_004339300.1 KEGG: spu:583196 similar to adenosine-like receptor YP_004339301.1 COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterPro IPR003741; IPR004017; KEGG: gsu:GSU1620 iron-sulfur cluster binding protein; PFAM: Domain of unknown function DUF162; Cysteine-rich domain; SPTR: Iron-sulfur cluster binding protein, putative; PFAM: Cysteine-rich domain; Uncharacterised ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein YP_004339302.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR022644; IPR022643; IPR002986; KEGG: gem:GM21_4145 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; PRIAM: Diaminopimelate decarboxylase; SPTR: Diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase YP_004339303.1 COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: ddf:DEFDS_0214 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase YP_004339304.1 COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: Dihydrodipicolinate synthase; InterPro IPR002220; IPR005263; KEGG: ddf:DEFDS_0215 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase YP_004339305.1 COGs: COG0289 Dihydrodipicolinate reductase; HAMAP: Dihydrodipicolinate reductase, bacterial/plant; InterPro IPR000846; IPR022663; IPR011770; KEGG: nde:NIDE0490 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, N-terminal; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase YP_004339306.1 COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583; IPR000836; IPR005854; KEGG: nde:NIDE1393 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; TIGRFAM: Amidophosphoribosyl transferase; PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase YP_004339307.1 COGs: COG1199 Rad3-related DNA helicase; InterProIPR011545; IPR010614; IPR014001; IPR006554; IPR 006555; KEGG: ipo:Ilyop_1350 helicase C2; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DEAD2; SMART: Helicase, ATP-dependent, c2 type; Helicase-like, DEXD box c2 type; DEAD-like helicase, N-terminal; SPTR: ATP-dependent helicase DinG; PFAM: DEAD_2; DEAD/DEAH box helicase; TIGRFAM: DnaQ family exonuclease/DinG family helicase, putative YP_004339308.1 KEGG: cho:Chro.70386 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated YP_004339309.1 KEGG: fpl:Ferp_2006 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339310.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807; IPR000644; KEGG: dol:Dole_3181 chloride channel core; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; SPTR: Chloride channel core; PFAM: CBS domain; Voltage gated chloride channel YP_004339311.1 COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003959; IPR003593; KEGG: nis:NIS_0066 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: ATPase, AAA family; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA) YP_004339312.1 COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR000728; IPR010918; IPR006283; KEGG: geo:Geob_0905 thiamine-monophosphate kinase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine-monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase YP_004339313.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550; IPR000644; IPR005170; KEGG: ddf:DEFDS_1081 magnesium/cobalt efflux protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core; SPTR: Magnesium/cobalt efflux protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain YP_004339314.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: dal:Dalk_0556 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_004339315.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: aae:aq_1899 dolichol-phosphate mannosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Dolichol-phosphate mannosyltransferase; PFAM: Glycosyl transferase family 2 YP_004339316.1 COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; IPR004772; KEGG: aae:aq_1504 K+ transport protein; PFAM: Cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: Putative uncharacterized protein; TIGRFAM: Potassium uptake protein TrkH; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family YP_004339317.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148; IPR006037; KEGG: hor:Hore_11690 TrkA-N domain protein; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: TrkA-N domain protein; PFAM: TrkA-N domain; TrkA-C domain YP_004339318.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; IPR006638; KEGG: dak:DaAHT2_1941 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily YP_004339319.1 COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: dap:Dacet_2891 silent information regulator protein Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: Silent information regulator protein Sir2; PFAM: Sir2 family YP_004339320.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: sfr:Sfri_1536 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; PRIAM: Diguanylate kinase; SMART: Diguanylate cyclase, predicted; SPTR: Response regulator receiver modulated diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; manually curated; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004339321.1 COGs: COG0426 flavoprotein; InterPro IPR001279; KEGG: nam:NAMH_0079 diguanylate cyclase (GGDEF) domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Diguanylate cyclase (GGDEF) domain protein; PFAM: Metallo-beta-lactamase superfamily YP_004339322.1 COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: sps:SPs1632 iojap protein family; PFAM: Ribosome-associated, Iojap-like; SPTR: Putative uncharacterized protein; TIGRFAM: Ribosome-associated, Iojap-like; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein YP_004339323.1 COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; InterPro IPR004820; IPR005248; IPR004821; KEGG: tye:THEYE_A0791 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain YP_004339324.1 COGs: COG0014 Gamma-glutamyl phosphate reductase; HAMAP: Glutamate-5-semialdehyde dehydrogenase; InterPro IPR012134; IPR000965; KEGG: ddf:DEFDS_1382 glutamate-5-semialdehyde dehydrogenase; PRIAM: Glutamate-5-semialdehyde dehydrogenase; SPTR: Gamma-glutamyl phosphate reductase; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase YP_004339325.1 COGs: COG0263 Glutamate 5-kinase; HAMAP: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; InterPro IPR001048; IPR002478; IPR005715; KEGG: pca:Pcar_2580 gamma-glutamyl kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: Glutamate 5-kinase; TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase; uncharacterized domain 2 YP_004339326.1 COGs: COG0536 GTPase; HAMAP: GTP-binding protein Obg/CgtA; InterPro IPR006169; IPR002917; IPR014100; IPR005225; KEGG: tye:THEYE_A0433 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain YP_004339327.1 COGs: COG0211 Ribosomal protein L27; HAMAP: Ribosomal protein L27; InterPro IPR001684; KEGG: cow:Calow_0935 ribosomal protein L27; PFAM: Ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_004339328.1 COGs: COG0261 Ribosomal protein L21; HAMAP: Ribosomal protein L21; InterPro IPR001787; KEGG: fma:FMG_0364 50S ribosomal protein L21; PFAM: Ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: Ribosomal protein L21; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_004339329.1 COGs: COG2862 membrane protein; InterPro IPR005134; KEGG: nam:NAMH_0669 hypothetical protein; PFAM: Uncharacterised protein family UPF0114; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein family, UPF0114 YP_004339330.1 KEGG: dal:Dalk_2492 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339331.1 COGs: COG0441 Threonyl-tRNA synthetase; InterPro IPR012947; IPR002314; IPR004154; IPR002320; KEGG: gur:Gura_2628 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; Anticodon-binding; SMART: Threonyl/alanyl tRNA synthetase, SAD; SPTR: Threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: threonyl-tRNA synthetase YP_004339332.1 COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR019814; IPR019815; IPR001288; KEGG: adg:Adeg_0534 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; SPTR: Translation initiation factor IF-3; TIGRFAM: Translation initiation factor 3; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3 YP_004339333.1 HAMAP: Ribosomal protein L35, non-mitochondrial; InterPro IPR021137; IPR001706; KEGG: nth:Nther_1822 LSU ribosomal protein L35P; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35, non-mitochondrial; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_004339334.1 COGs: COG0292 Ribosomal protein L20; HAMAP: Ribosomal protein L20; InterPro IPR005813; KEGG: ddf:DEFDS_1501 50S ribosomal protein L20; PFAM: Ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: Ribosomal protein L20; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_004339335.1 COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain 1, bacterial; InterPro IPR004188; IPR002319; IPR022911; IPR004529; KEGG: tye:THEYE_A1417 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: Phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit YP_004339336.1 COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR002547; IPR005146; IPR005147; IPR005121; IPR 004532; KEGG: ddf:DEFDS_1621 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding domain; tRNA synthetase, B5; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SMART: B3/B4 tRNA-binding domain; tRNA synthetase, B5; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SPTR: Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial YP_004339337.1 COGs: COG0060 Isoleucyl-tRNA synthetase; HAMAP: Isoleucyl-tRNA synthetase, class Ia; InterPro IPR002300; IPR013155; IPR010663; IPR002301; KEGG: ddf:DEFDS_1185 isoleucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase; PRIAM: Isoleucine--tRNA ligase; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Zinc finger found in FPG and IleRS; TIGRFAM: isoleucyl-tRNA synthetase YP_004339338.1 COGs: COG2078 conserved hypothetical protein; HAMAP: AMMECR1-domain protein; InterPro IPR002733; KEGG: mvu:Metvu_0085 AMMECR1 domain protein; PFAM: AMMECR1; SPTR: AMMECR1 domain protein; TIGRFAM: AMMECR1; PFAM: AMMECR1; TIGRFAM: uncharacterized protein, PH0010 family YP_004339339.1 KEGG: pmu:PM0312 hypothetical protein; SPTR: Serine-tRNA synthetase YP_004339340.1 KEGG: bpo:BP951000_0457 O-linked GlcNAc transferase; SPTR: Response regulator aspartate phosphatase YP_004339341.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744; KEGG: pab:PAB1087 dTDP-4-keto-L-rhamnose reductase related; PFAM: Domain of unknown function DUF59; SPTR: Component of ring hydroxylating complex, putative; PFAM: Domain of unknown function DUF59 YP_004339342.1 InterPro IPR011642; KEGG: ddf:DEFDS_2158 hypothetical protein; PFAM: Nucleoside recognition; SPTR: Putative uncharacterized protein; PFAM: Nucleoside recognition YP_004339343.1 InterPro IPR011642; KEGG: ddf:DEFDS_2159 hypothetical protein; PFAM: Nucleoside recognition; SPTR: Putative uncharacterized protein; PFAM: Nucleoside recognition YP_004339344.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: ddf:DEFDS_1278 mechanosensitive ion channel, MscS family; PFAM: Mechanosensitive ion channel MscS; SPTR: Mechanosensitive ion channel, MscS family; PFAM: Mechanosensitive ion channel YP_004339345.1 COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001029; KEGG: ddf:DEFDS_2144 hypothetical protein; PFAM: Flagellin, D0/D1 domain; SPTR: Putative uncharacterized protein; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region YP_004339346.1 COGs: COG1256 Flagellar hook-associated protein; InterPro IPR001444; IPR010930; IPR002371; KEGG: ddf:DEFDS_2145 flagellar hook-associated protein 1 FlgK; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; SPTR: Flagellar hook-associated protein 1 FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar hook-associated protein FlgK YP_004339347.1 InterPro IPR007809; KEGG: mta:Moth_0745 FlgN; PFAM: FlgN-like domain; SPTR: FlgN; PFAM: FlgN protein YP_004339348.1 InterPro IPR007412; KEGG: cdf:CD0229 negative regulator of flagellin synthesis (anti-sigma-D factor); PFAM: Anti-sigma-28 factor, FlgM; SPTR: Anti-sigma factor repressor of sigma-D-dependent transcription; TIGRFAM: Anti-sigma-28 factor, FlgM; PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM YP_004339349.1 COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR019301; IPR008258; KEGG: tjr:TherJR_0082 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; Flagellar protein FlgJ, N-terminal; SPTR: Putative uncharacterized protein; PFAM: Transglycosylase SLT domain; Rod binding protein YP_004339350.1 COGs: COG1706 Flagellar basal-body P-ring protein; HAMAP: Flagellar P-ring protein; InterPro IPR001782; KEGG: ddf:DEFDS_2149 flagellar P-ring protein FlgI; PFAM: Flagellar P-ring protein; SPTR: Flagellar P-ring protein; PFAM: Flagellar P-ring protein YP_004339351.1 COGs: COG2063 Flagellar basal body L-ring protein; HAMAP: Flagellar L-ring protein; InterPro IPR000527; KEGG: pca:Pcar_1154 flagellar biosynthesis, basal-body outer-membrane L (lipopolysaccharide layer) ring protein; PFAM: Flagellar L-ring protein; SPTR: Flagellar L-ring protein; PFAM: Flagellar L-ring protein YP_004339352.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646; KEGG: ttm:Tthe_0092 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Poly A polymerase, head domain; SPTR: Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: HD domain; Poly A polymerase head domain YP_004339353.1 COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: sfu:Sfum_0464 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Uncharacterized protein AF_1420; PFAM: SPFH domain / Band 7 family YP_004339354.1 COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: tye:THEYE_A0592 membrane-bound serine protease; PFAM: Nodulation efficiency, NfeD; SPTR: Membrane-bound serine protease; PFAM: NfeD-like YP_004339355.1 KEGG: dba:Dbac_1481 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339356.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063; KEGG: saf:SULAZ_1054 PP-loop domain protein; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; SPTR: PP-loop domain protein; PFAM: PP-loop family; TIGRFAM: conserved hypothetical protein TIGR00269 YP_004339357.1 COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR014001; IPR001650; IPR011545; IPR005259; KEGG: tmt:Tmath_1364 primosomal protein N'; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: Primosomal protein N'; TIGRFAM: Primosomal protein n; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N' YP_004339358.1 HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: tye:THEYE_A1026 ribosomal protein S21; PFAM: Ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21 YP_004339359.1 COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616; IPR008532; KEGG: tte:TTE1517 RNA-binding protein snRNP; PFAM: Fibronectin-binding A, N-terminal; Domain of unknown function DUF814; SPTR: Predicted RNA-binding protein homologous to eukaryotic snRNP; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA) YP_004339360.1 InterPro IPR003825; KEGG: ddf:DEFDS_1584 colicin V production protein; PFAM: Colicin V production, CvpA; SPTR: Colicin V production protein; PFAM: Colicin V production protein YP_004339361.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: ant:Arnit_0475 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; PFAM: Peptidase family M23 YP_004339362.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: cac:CA_C0883 cation efflux pump (multidrug resistance protein); PFAM: Multi antimicrobial extrusion protein; SPTR: Putative efflux pump; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: putative efflux protein, MATE family YP_004339363.1 COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: phe:Phep_3845 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Similar to chlorohydrolase/deaminase family; PFAM: Amidohydrolase family YP_004339364.1 COGs: COG1749 Flagellar hook protein FlgE; InterPro IPR001444; IPR011491; IPR010930; IPR020013; KEGG: sua:Saut_0043 flagellar hook protein FlgE; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal; SPTR: Flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: flagellar hook protein FlgE, epsilon proteobacterial; fagellar hook-basal body proteins YP_004339365.1 COGs: COG1749 Flagellar hook protein FlgE; InterPro IPR001444; IPR011491; IPR010930; IPR020013; KEGG: aar:Acear_1637 flagellar hook-basal body protein; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal; SPTR: Flagellar hook-basal body protein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: flagellar hook protein FlgE, epsilon proteobacterial; fagellar hook-basal body proteins YP_004339366.1 COGs: COG1843 Flagellar hook capping protein; InterPro IPR005648; KEGG: tle:Tlet_1819 flagellar hook capping protein; PFAM: Flagellar hook capping protein; SPTR: Flagellar hook capping protein; PFAM: Flagellar hook capping protein YP_004339367.1 KEGG: rno:687472 hypothetical protein LOC687472; SPTR: Putative uncharacterized protein; PFAM: Flagellar hook-length control protein FliK YP_004339368.1 COGs: COG0063 sugar kinase; InterPro IPR004443; IPR000631; KEGG: sul:SYO3AOP1_0500 carbohydrate kinase, YjeF related protein; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related; SPTR: Carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region YP_004339369.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789; IPR000160; KEGG: ddf:DEFDS_0973 signal transduction response regulator; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; SPTR: Signal transduction response regulator; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004339370.1 COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: tye:THEYE_A0690 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; PRIAM: Porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase; PFAM: Delta-aminolevulinic acid dehydratase YP_004339371.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0604 A-glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: A-glycosyltransferase-related protein, glycosyltransferase family 4 protein; PFAM: Glycosyl transferases group 1 YP_004339372.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: dvl:Dvul_1287 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase YP_004339373.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; HAMAP: UbiE/COQ5 methyltransferase; InterPro IPR004033; KEGG: gme:Gmet_1167 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases YP_004339374.1 KEGG: lga:LGAS_0829 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein; SPTR:Phosphatidylserine/ phosphatidylglycerophosphate/ cardiolipin synthase related enzyme YP_004339375.1 KEGG: cyp:PCC8801_1820 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: PemK-like protein YP_004339376.1 manually curated; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2 YP_004339377.1 COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase, class II; InterPro IPR002313; IPR004365; IPR004364; KEGG: tye:THEYE_A1233 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_004339378.1 COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; IPR004772; KEGG: ddf:DEFDS_1538 K+ transport (Trk) system membrane component; PFAM: Cation transporter; SPTR: K+ transport (Trk) system, membrane component; TIGRFAM: Potassium uptake protein TrkH; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family YP_004339379.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148; IPR006037; KEGG: dap:Dacet_2986 TrkA-N domain protein; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: TrkA-N domain protein; PFAM: TrkA-N domain; TrkA-C domain YP_004339380.1 COGs: COG0158 Fructose-1 6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase; InterPro IPR000146; KEGG: ddf:DEFDS_1408 fructose-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase; PRIAM: Fructose-bisphosphatase; SPTR: Fructose-1,6-bisphosphatase class 1; PFAM: Fructose-1-6-bisphosphatase YP_004339381.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ddf:DEFDS_0133 peptide/nickel ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Peptide/nickel ABC transporter, permease; PFAM: Binding-protein-dependent transport system inner membrane component YP_004339382.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; IPR011923; KEGG: gur:Gura_2857 rod shape-determining protein RodA; PFAM: Cell cycle protein; SPTR: Rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA YP_004339383.1 COGs: COG1530 Ribonuclease G and E; InterPro IPR019307; IPR004659; KEGG: cow:Calow_1819 ribonuclease, rne/rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; SPTR: Ribonuclease G; TIGRFAM: Ribonuclease E/G; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family YP_004339384.1 COGs: COG0015 Adenylosuccinate lyase; InterPro IPR022761; IPR019468; IPR004769; KEGG: nam:NAMH_1763 adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal metazoa/fungi; SPTR: Adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase YP_004339385.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: sfu:Sfum_1949 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: PAS/PAC sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004339386.1 InterPro IPR003594; KEGG: gur:Gura_1422 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SPTR: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase YP_004339387.1 InterPro IPR003660; KEGG: mev:Metev_1934 multi-sensor signal transduction histidine kinase; PFAM: HAMP linker domain; SMART: HAMP linker domain; SPTR: Methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: HAMP domain YP_004339388.1 COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR008207; IPR003594; IPR002545; IPR001789; IPR 004105; KEGG: hpb:HELPY_1033 chemotaxis protein CheA; PFAM: CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction response regulator, receiver domain; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; SPTR: Histidine kinase (CheA); PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; Signal transducing histidine kinase, homodimeric domain; Hpt domain YP_004339389.1 COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: dap:Dacet_2252 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein; SPTR: CheW protein; PFAM: CheW-like domain YP_004339390.1 COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; IPR001789; KEGG: ccv:CCV52592_1656 ATP synthase gamma chain (ATP synthase F1 sector gammasubunit); PFAM: Signal transduction response regulator, receiver domain; CheW-like protein; SMART: CheW-like protein; Signal transduction response regulator, receiver domain; SPTR: ATP synthase gamma chain (ATP synthase F1 sector gammasubunit); PFAM: CheW-like domain; Response regulator receiver domain YP_004339391.1 COGs: COG1406 inhibitor of MCP methylation homolog of CheC; InterPro IPR007597; KEGG: ddf:DEFDS_0111 hypothetical protein; PFAM: CheC-like protein; SPTR: Putative uncharacterized protein; PFAM: CheC-like family YP_004339392.1 KEGG: hpl:HPB8_1396 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Chemotaxis phosphatase, CheZ YP_004339393.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789; KEGG: ddf:DEFDS_0422 two-component system, chemotaxis family, response regulator CheY; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Chemotaxis regulatory protein; PFAM: Response regulator receiver domain YP_004339394.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003593; IPR003439; KEGG: sid:M164_2682 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004339395.1 COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR004383; IPR007197; KEGG: gsu:GSU1111 ribosomal RNA large subunit methyltransferase N; PFAM: Radical SAM; SPTR: Ribosomal RNA large subunit methyltransferase N; TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family YP_004339396.1 COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR002176; KEGG: ppy:PPE_03632 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease ruvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_004339397.1 COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR002482; IPR018392; IPR000064; KEGG: tye:THEYE_A1300 probable endopeptidase LytE; PFAM: NLP/P60; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Probable endopeptidase LytE; PFAM: NlpC/P60 family; LysM domain YP_004339398.1 COGs: COG1882 Pyruvate-formate lyase; InterPro IPR004184; IPR001150; IPR010098; KEGG: ddf:DEFDS_2103 pyruvate formate-lyase; PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical; PRIAM: Formate C-acetyltransferase; SPTR: Pyruvate formate-lyase; TIGRFAM: Pyruvate formate-lyase; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: pyruvate formate-lyase YP_004339399.1 COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197; IPR001450; IPR012839; KEGG: ddf:DEFDS_2104 pyruvate formate-lyase activating enzyme; PFAM: Radical SAM; 4Fe-4S binding domain; PRIAM: [Formate-C-acetyltransferase]-activating enzyme; SPTR: Pyruvate formate-lyase activating enzyme; TIGRFAM: Glycyl radical enzyme-activating; PFAM: 4Fe-4S binding domain; Radical SAM superfamily; TIGRFAM: glycyl-radical enzyme activating protein family YP_004339400.1 COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: ddf:DEFDS_1547 solute:sodium symporter; PFAM: Sodium/solute symporter; SPTR: Solute:sodium symporter; PFAM: Sodium:solute symporter family YP_004339401.1 COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: bmd:BMD_0734 Na(+)/H(+) antiporter; PFAM: Cation/H+ exchanger; SPTR: Putative Na(+)/H(+) antiporter; PFAM: Sodium/hydrogen exchanger family YP_004339402.1 InterPro IPR000086; KEGG: cst:CLOST_1922 NUDIX-family protein; PFAM: NUDIX hydrolase domain; SPTR: MutT/nudix family protein; PFAM: NUDIX domain YP_004339403.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834; IPR010237; IPR006402; KEGG: pca:Pcar_3072 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase, hydrolase family; TIGRFAM: Pyrimidine 5-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; pyrimidine 5'-nucleotidase YP_004339404.1 COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035; IPR005925; KEGG: ddf:DEFDS_0967 agmatinase; PFAM: Ureohydrolase; PRIAM: Agmatinase; SPTR: Agmatinase; TIGRFAM: Putative agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase YP_004339405.1 COGs: COG1945 conserved hypothetical protein; HAMAP: Pyruvoyl-dependent arginine decarboxylase; InterPro IPR002724; KEGG: mfe:Mefer_1277 pyruvoyl-dependent arginine decarboxylase; PFAM: Pyruvoyl-dependent arginine decarboxylase; PRIAM: Arginine decarboxylase; SPTR: Pyruvoyl-dependent arginine decarboxylase; TIGRFAM: Pyruvoyl-dependent arginine decarboxylase; PFAM: Pyruvoyl-dependent arginine decarboxylase (PvlArgDC); TIGRFAM: arginine decarboxylase, pyruvoyl-dependent YP_004339406.1 COGs: COG1586 S-adenosylmethionine decarboxylase; HAMAP: S-adenosylmethionine decarboxylase proenzyme; InterPro IPR017716; IPR003826; KEGG: amt:Amet_2648 S-adenosylmethionine decarboxylase related; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; PRIAM: Adenosylmethionine decarboxylase; SPTR: S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form YP_004339407.1 KEGG: ter:Tery_1906 Na-Ca exchanger/integrin-beta4; SPTR: Na-Ca exchanger/integrin-beta4; PFAM: Developmentally Regulated MAPK Interacting Protein YP_004339408.1 COGs: COG2954 conserved hypothetical protein; KEGG: ccv:CCV52592_1673 CHAD domain-contain protein; SPTR: Chad domain family YP_004339409.1 COGs: COG2206 HD-GYP domain; InterPro IPR003607; IPR006674; IPR006675; KEGG: dtu:Dtur_1688 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HD domain; GGDEF domain; TIGRFAM: uncharacterized domain HDIG YP_004339410.1 KEGG: tva:TVAG_332600 hypothetical protein; SPTR: Viral A-type inclusion protein repeat protein YP_004339411.1 COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006175; IPR006056; KEGG: amt:Amet_2316 putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Putative endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative YP_004339412.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: rva:Rvan_0326 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme YP_004339413.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: kol:Kole_0631 histidine triad (HIT) protein; PFAM: Histidine triad (HIT) protein; SPTR: Histidine triad (HIT) protein; PFAM: HIT domain YP_004339414.1 COGs: COG1342 DNA-binding protein; HAMAP: Uncharacterised protein family UPF0251; InterPro IPR002852; KEGG: nam:NAMH_0802 DNA-binding protein; PFAM: Uncharacterised protein family UPF0251; SPTR: UPF0251 protein NAMH_0802; PFAM: Protein of unknown function DUF134 YP_004339415.1 COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; IPR013027; KEGG: ddf:DEFDS_1694 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: 2,4-dienoyl-CoA reductase (NADPH); SPTR: NADH:flavin oxidoreductase/NADH oxidase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase / NADH oxidase family YP_004339416.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148; IPR006037; KEGG: pca:Pcar_0177 K+ transport systems, NAD-binding component; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: K+ transport systems, NAD-binding component; PFAM: TrkA-N domain; TrkA-C domain YP_004339417.1 COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: afu:AF0217 Na+/H+ antiporter (NapA-1); PFAM: Cation/H+ exchanger; SPTR: Na+/H+ antiporter (NapA-1); PFAM: Sodium/hydrogen exchanger family YP_004339418.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR008910; IPR006685; KEGG: tdn:Suden_0047 MscS mechanosensitive ion channel; PFAM: Mechanosensitive ion channel MscS; Conserved TM helix; SPTR: MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel; Conserved TM helix YP_004339419.1 KEGG: dal:Dalk_0097 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339420.1 COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: nam:NAMH_0812 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase, NifS family, epsilon proteobacteria type YP_004339421.1 COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871; IPR007419; IPR001075; KEGG: nam:NAMH_0813 NifU family protein; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; BFD-like [2Fe-2S]-binding domain; NIF system FeS cluster assembly, NifU, C-terminal; SPTR: Nitrogen fixation protein nifU; PFAM: NifU-like N terminal domain; BFD-like [2Fe-2S] binding domain; NifU-like domain; TIGRFAM: Fe-S cluster assembly protein NifU YP_004339422.1 COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: cbf:CLI_2632 rrF2 family protein; PFAM: Transcription regulator Rrf2; SPTR: RrF2 family protein; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator) YP_004339423.1 InterPro IPR003448; KEGG: sat:SYN_01004 protein involved in biosynthesis of molybdopterin; PFAM: Molybdopterin biosynthesis MoaE; SPTR: Protein involved in biosynthesis of molybdopterin; PFAM: MoaE protein YP_004339424.1 COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027; IPR004099; KEGG: has:Halsa_1286 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Pyridine nucleotide-disulphide oxidoreductase dimerization region; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_004339425.1 COGs: COG1945 conserved hypothetical protein; HAMAP: Pyruvoyl-dependent arginine decarboxylase; InterPro IPR002724; KEGG: mfe:Mefer_1277 pyruvoyl-dependent arginine decarboxylase; PFAM: Pyruvoyl-dependent arginine decarboxylase; PRIAM: Arginine decarboxylase; SPTR: Pyruvoyl-dependent arginine decarboxylase; TIGRFAM: Pyruvoyl-dependent arginine decarboxylase; PFAM: Pyruvoyl-dependent arginine decarboxylase (PvlArgDC); TIGRFAM: arginine decarboxylase, pyruvoyl-dependent YP_004339426.1 COGs: COG1586 S-adenosylmethionine decarboxylase; HAMAP: S-adenosylmethionine decarboxylase proenzyme; InterPro IPR017716; IPR003826; KEGG: amt:Amet_2648 S-adenosylmethionine decarboxylase related; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; PRIAM: Adenosylmethionine decarboxylase; SPTR: S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form YP_004339427.1 COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: csc:Csac_2392 integrase catalytic subunit; PFAM: Integrase, catalytic core; SPTR: Integrase, catalytic region; PFAM: Integrase core domain YP_004339428.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sul:SYO3AOP1_1122 transposase mutator type; PFAM: Transposase, mutator type; SPTR: Transposase mutator type; PFAM: Transposase, Mutator family YP_004339429.1 COGs: COG1484 DNA replication protein; InterPro IPR003593; IPR002611; KEGG: csc:Csac_2606 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: IstB domain protein ATP-binding protein; PFAM: IstB-like ATP binding protein YP_004339430.1 KEGG: sat:SYN_02728 hypothetical protein; SPTR: Hypothetical membrane protein YP_004339431.1 KEGG: mlo:mlr9161 hypothetical protein; SPTR: Predicted protein YP_004339432.1 InterPro IPR002223; KEGG: sat:SYN_02414 hypothetical protein; PFAM: Proteinase inhibitor I2, Kunitz metazoa; SMART: Proteinase inhibitor I2, Kunitz metazoa; SPTR: Kunitz/bovine pancreatic trypsin inhibitor domain protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2330); Kunitz/Bovine pancreatic trypsin inhibitor domain YP_004339433.1 KEGG: rcu:RCOM_0864920 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339434.1 KEGG: bha:BH0827 fructose 1-phosphate kinase YP_004339435.1 KEGG: mca:MCA0279 DNA binding domain-containing protein; SPTR: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family YP_004339436.1 KEGG: mcl:MCCL_1481 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339437.1 InterPro IPR002941; KEGG: rca:Rcas_1939 DNA methylase N-4/N-6 domain-containing protein; PFAM: DNA methylase N-4/N-6; SPTR: DNA adenine modification methylase; PFAM: DNA methylase YP_004339438.1 COGs: COG5421 Transposase; InterPro IPR002559; KEGG: amc:MADE_02905 transposase, IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain YP_004339439.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: ddf:DEFDS_1303 biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; SPTR: Biotin biosynthesis protein BioC; PFAM: Methyltransferase domain; TIGRFAM: biotin biosynthesis protein BioC YP_004339440.1 KEGG: ddf:DEFDS_1302 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339441.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; IPR004723; KEGG: ddf:DEFDS_1301 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/classII; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase YP_004339442.1 COGs: COG0502 Biotin synthase; InterPro IPR006638; IPR010722; IPR007197; IPR002684; KEGG: ddf:DEFDS_1300 biotin synthetase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; Biotin/thiamin synthesis-associated protein; SPTR: Biotin synthetase; TIGRFAM: Biotin synthase; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase YP_004339443.1 COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814; IPR005815; KEGG: ddf:DEFDS_1299 adenosylmethionine--8-amino-7-oxononanoate transaminase; PFAM: Aminotransferase class-III; PRIAM: Adenosylmethionine--8-amino-7-oxononanoate transaminase; SPTR: Adenosylmethionine--8-amino-7-oxononanoate transaminase; TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase YP_004339444.1 COGs: COG0132 Dethiobiotin synthetase; InterPro IPR004472; KEGG: ddf:DEFDS_1298 dethiobiotin synthetase; SPTR: Dethiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: dethiobiotin synthase YP_004339445.1 COGs: COG1059 Thermostable 8-oxoguanine DNA glycosylase; InterPro IPR003265; KEGG: abi:Aboo_0474 DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD domain; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: DNA-(Apurinic or apyrimidinic site) lyase; PFAM: Domain of unknown function (DUF1886); HhH-GPD superfamily base excision DNA repair protein YP_004339446.1 COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; IPR004039; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin; PFAM: Flavin reductase-like, FMN-binding; Rubredoxin-type Fe(Cys)4 protein; SMART: Flavin reductase-like, FMN-binding; SPTR: Rubredoxin; PFAM: Rubredoxin; Flavin reductase like domain YP_004339447.1 COGs: COG0426 flavoprotein; InterPro IPR001279; IPR008254; KEGG: abi:Aboo_0876 flavodoxin/nitric oxide synthase; PFAM: Beta-lactamase-like; Flavodoxin/nitric oxide synthase; SMART: Beta-lactamase-like; SPTR: Flavodoxin/nitric oxide synthase; PFAM: Metallo-beta-lactamase superfamily YP_004339448.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: abi:Aboo_0877 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family YP_004339449.1 COGs: COG1528 Ferritin-like protein; InterPro IPR008331; KEGG: abi:Aboo_0879 ferroxidase; PFAM: Ferritin/Dps protein; PRIAM: Ferroxidase; SPTR: Ferroxidase; PFAM: Ferritin-like domain YP_004339450.1 COGs: COG2033 Desulfoferrodoxin; InterPro IPR004462; IPR002742; IPR004793; KEGG: taf:THA_1590 desulfoferrodoxin; PFAM: Desulfoferrodoxin, ferrous iron-binding domain; Desulfoferrodoxin Dfx; SPTR: Desulfoferrodoxin; TIGRFAM: Desulfoferrodoxin; Desulfoferrodoxin Dfx; Desulfoferrodoxin, ferrous iron-binding domain; PFAM: Desulfoferrodoxin; Desulfoferrodoxin, N-terminal domain; TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain; desulfoferrodoxin; desulfoferrodoxin ferrous iron-binding domain YP_004339451.1 InterPro IPR001444; KEGG: mmb:Mmol_2015 flagellar basal body rod protein; PFAM: Flagellar basal body rod protein, N-terminal; SPTR: Flagellar basal body rod protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein YP_004339452.1 COGs: COG1635 Flavoprotein involved in thiazole biosynthesis; HAMAP: Thiazole biosynthetic enzyme, putative; InterPro IPR022828; IPR002922; KEGG: mth:MTH1620 ribulose-1,5-biphosphate synthetase; SPTR: Ribose 1,5-bisphosphate isomerase; TIGRFAM: Thiamine biosynthesis Thi4 protein; PFAM: Thi4 family; TIGRFAM: thiazole biosynthesis enzyme YP_004339453.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: aae:aq_1236 hypothetical protein; PFAM: Glycosyl transferase, family 39; SPTR: Putative uncharacterized protein YP_004339454.1 COGs: COG0703 Shikimate kinase; HAMAP: Shikimate kinase; InterPro IPR000623; KEGG: maq:Maqu_2014 shikimate kinase; PFAM: Shikimate kinase; SPTR: Shikimate kinase; PFAM: Shikimate kinase YP_004339455.1 COGs: COG2316 hydrolase (HD superfamily); InterPro IPR006674; IPR006675; KEGG: ddf:DEFDS_1810 HAD-superfamily hydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SPTR: HAD-superfamily hydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004339456.1 COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: Translation elongation factor P; InterPro IPR015365; IPR011768; IPR013185; IPR001059; KEGG: tjr:TherJR_1731 translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; SMART: Elongation factor P, C-terminal; SPTR: Elongation factor P; TIGRFAM: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P YP_004339457.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: mpd:MCP_2833 MFS transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: MFS transporter; PFAM: Major Facilitator Superfamily YP_004339458.1 COGs: COG0004 Ammonia permease; InterPro IPR001905; KEGG: saf:SULAZ_1157 ammonium transporter NrgA (membrane protein NrgA) (protein AmtB); PFAM: Ammonium transporter; SPTR: Ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB); TIGRFAM: Ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter YP_004339459.1 COGs: COG0004 Ammonia permease; InterPro IPR001905; KEGG: saf:SULAZ_1157 ammonium transporter NrgA (membrane protein NrgA) (protein AmtB); PFAM: Ammonium transporter; SPTR: Ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB); TIGRFAM: Ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter YP_004339460.1 COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187; KEGG: rde:RD1_2570 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; SPTR: Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II YP_004339461.1 COGs: COG0124 Histidyl-tRNA synthetase; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR015807; IPR002314; IPR004154; KEGG: dak:DaAHT2_2034 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase YP_004339462.1 COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004365; IPR004364; IPR004115; IPR004524; KEGG: csc:Csac_0677 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: Aspartate--tRNA ligase; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_004339463.1 COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB); HAMAP: Tryptophan synthase beta chain/beta chain-like; InterPro IPR023026; IPR001926; IPR006316; KEGG: tye:THEYE_A0084 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase beta chain 1; TIGRFAM: Tryptophan synthase, beta chain-like; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme YP_004339464.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963; IPR006656; IPR006657; IPR006311; KEGG: cts:Ctha_1848 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; SPTR: Molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004339465.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR001450; KEGG: cpc:Cpar_1389 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain YP_004339466.1 COGs: COG3301 Formate-dependent nitrite reductase membrane component; InterPro IPR005614; KEGG: pph:Ppha_1337 polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD; SPTR: Polysulfide reductase, subunit C, putative; PFAM: Polysulphide reductase, NrfD YP_004339467.1 KEGG: apo:Arcpr_0159 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phosphate-starvation-inducible E YP_004339468.1 COGs: COG0442 Prolyl-tRNA synthetase; HAMAP: Prolyl-tRNA synthetase, class IIa, bacterial; InterPro IPR004500; IPR002314; IPR007214; IPR004154; KEGG: ppd:Ppro_1753 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding; SPTR: Prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; PFAM: YbaK / prolyl-tRNA synthetases associated domain; Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II YP_004339469.1 COGs: COG1362 Aspartyl aminopeptidase; InterPro IPR001948; KEGG: tit:Thit_1508 peptidase M18 aminopeptidase I; PFAM: Peptidase M18; SPTR: M18 family aminopeptidase; PFAM: Aminopeptidase I zinc metalloprotease (M18) YP_004339470.1 COGs: COG2206 HD-GYP domain; InterPro IPR003607; IPR003018; IPR006674; IPR006675; KEGG: sua:Saut_1723 diguanylate cyclase and metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; GAF; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Response regulator receiver protein; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HD domain; GGDEF domain; GAF domain; TIGRFAM: uncharacterized domain HDIG; diguanylate cyclase (GGDEF) domain YP_004339471.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR002933; IPR011650; IPR001160; KEGG: mac:MA2653 aminoacyl-histidine dipeptidase; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Xaa-His dipeptidase; SPTR: Aminoacyl-histidine dipeptidase; TIGRFAM: Peptidase M20C, Xaa-His dipeptidase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: aminoacyl-histidine dipeptidase YP_004339472.1 COGs: COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; InterPro IPR004435; KEGG: cbe:Cbei_3799 molybdopterin-guanine dinucleotide biosynthesis protein B; SPTR: Molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB), conserved domain; PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: small GTP-binding protein domain; molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_004339473.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dvl:Dvul_1934 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1 YP_004339474.1 COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: sat:SYN_00133 lipid A biosynthesis lauroyl acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis lauroyl acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase YP_004339475.1 COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR013954; IPR006543; IPR006549; KEGG: aco:Amico_1357 histidinol-phosphate phosphatase family protein; SPTR: Putative uncharacterized protein; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family domain; histidinol-phosphatase YP_004339476.1 COGs: COG0352 Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; InterPro IPR003733; KEGG: cob:COB47_0339 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase; PRIAM: Thiamine-phosphate diphosphorylase; SPTR: Thiamine-phosphate pyrophosphorylase; TIGRFAM: Thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase YP_004339477.1 COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterPro IPR006638; IPR007197; IPR010505; IPR013483; KEGG: tjr:TherJR_0759 molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM; Molybdenum cofactor synthesis C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Molybdenum cofactor biosynthesis protein A; TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial YP_004339478.1 COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; IPR023045; KEGG: cbe:Cbei_1990 molybdenum cofactor biosynthesis protein MoaC; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain; SPTR: Molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdenum cofactor biosynthesis C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC YP_004339479.1 KEGG: pmx:PERMA_0009 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2914) YP_004339480.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089; IPR013655; IPR000014; KEGG: nam:NAMH_0226 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: Methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain; PAS fold; TIGRFAM: PAS domain S-box YP_004339481.1 COGs: COG0065 3-isopropylmalate dehydratase large subunit; HAMAP: Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; InterPro IPR011826; IPR001030; IPR011823; IPR006251; KEGG: drm:Dred_0286 3-isopropylmalate dehydratase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SPTR: 3-isopropylmalate dehydratase large subunit 1; TIGRFAM: 3-isopropylmalate dehydratase, large subunit, prokaryotic; Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase family protein YP_004339482.1 COGs: COG0066 3-isopropylmalate dehydratase small subunit; HAMAP: 3-isopropylmalate dehydratase small subunit; InterPro IPR000573; IPR011824; IPR011827; KEGG: tjr:TherJR_0365 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; PRIAM: (R)-2-methylmalate dehydratase; SPTR: 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, bacterial-like; 3-isopropylmalate dehydratase, small subunit, subgroup; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_004339483.1 COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; InterPro IPR004429; IPR001804; KEGG: nis:NIS_0727 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase YP_004339484.1 COGs: COG0622 phosphoesterase; InterPro IPR004843; IPR000979; KEGG: fno:Fnod_0185 phosphodiesterase; PFAM: Metallo-dependent phosphatase; SPTR: Phosphodiesterase, MJ0936 family; TIGRFAM: Phosphodiesterase MJ0936; manually curated; TIGRFAM: phosphoesterase, MJ0936 family YP_004339485.1 COGs: COG0218 GTPase; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; InterPro IPR019987; IPR002917; IPR005225; KEGG: tna:CTN_1027 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related; SPTR: Probable GTP-binding protein engB; TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain YP_004339486.1 COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; HAMAP: Heat shock protein HslU; InterPro IPR003593; IPR004491; IPR013093; IPR019489; KEGG: pmx:PERMA_0598 ATP-dependent protease ATP-binding subunit HslU; PFAM: ATPase, AAA-2; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent protease ATPase subunit HslU; TIGRFAM: Heat shock protein HslU; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent protease HslVU, ATPase subunit YP_004339487.1 COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; HAMAP: ATP-dependent protease, HslV subunit; InterPro IPR022281; IPR001353; KEGG: ddf:DEFDS_2155 ATP-dependent protease HslVU, peptidase subunit HslV; PFAM: Proteasome, subunit alpha/beta; SPTR: ATP-dependent protease subunit HslV; TIGRFAM: ATP-dependent protease, HslV subunit; PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit YP_004339488.1 COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease, ATP-binding subunit ClpX; InterProIPR003593; IPR004487; IPR010603; IPR013093; IPR 019489; KEGG: ddf:DEFDS_0194 ATP-dependent Clp protease ATP-binding subunit; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_004339489.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: Peptidase S14, ClpP; InterPro IPR001907; KEGG: dps:DP2538 ATP-dependent Clp protease, proteolytic subunit (ClpP); PFAM: Peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; TIGRFAM: Peptidase S14, ClpP; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP YP_004339490.1 COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); HAMAP: Trigger factor; InterPro IPR005215; IPR008881; IPR001179; IPR008880; KEGG: toc:Toce_1768 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial; SPTR: Trigger factor; TIGRFAM: Trigger factor; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor YP_004339491.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ddf:DEFDS_1610 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004339492.1 COGs: COG2518 Protein-L-isoaspartate carboxylmethyltransferase; InterPro IPR000682; KEGG: maq:Maqu_1222 protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004339493.1 COGs: COG0469 Pyruvate kinase; InterPro IPR015793; IPR015795; IPR001697; KEGG: nam:NAMH_0548 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase YP_004339494.1 COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003593; IPR003439; KEGG: cpc:Cpar_0300 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter YP_004339495.1 COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR007046; IPR007634; IPR000394; KEGG: aar:Acear_0320 RNA polymerase, sigma 54 subunit, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor YP_004339496.1 COGs: COG0557 Exoribonuclease R; InterProIPR001900; IPR022967; IPR003029; IPR011805; IPR 004476; KEGG: ttm:Tthe_1209 ribonuclease R; PFAM: Ribonuclease II/R; Ribosomal protein S1, RNA-binding domain; SMART: Ribonuclease II/R; RNA-binding domain, S1; SPTR: Ribonuclease R; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases YP_004339497.1 COGs: COG2052 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0296; InterPro IPR007169; KEGG: taf:THA_332 hypothetical protein; PFAM: Uncharacterised protein family UPF0296; SPTR: UPF0296 protein THA_332; PFAM: Domain of unknown function (DUF370) YP_004339498.1 COGs: COG0194 Guanylate kinase; InterPro IPR008145; IPR008144; IPR017665; KEGG: pmx:PERMA_1421 guanylate kinase; PFAM: Guanylate kinase; PRIAM: Guanylate kinase; SMART: Guanylate kinase/L-type calcium channel; SPTR: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_004339499.1 InterPro IPR006110; KEGG: geo:Geob_2144 DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase, subunit omega/K/RPABC2; SPTR: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6 YP_004339500.1 COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR003607; IPR007685; IPR006674; IPR004095; IPR 002912; IPR004811; KEGG: ddf:DEFDS_0048 GTP pyrophosphokinase; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS; Amino acid-binding ACT; PRIAM: GTP diphosphokinase; SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain; SPTR: GTP pyrophosphokinase; TIGRFAM: RelA/SpoT protein; PFAM: HD domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_004339501.1 COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: dde:Dde_0996 rod shape-determining protein MreB; PFAM: Cell shape determining protein MreB/Mrl; SPTR: Rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_004339502.1 InterPro IPR007221; KEGG: cpf:CPF_2397 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein; PFAM: rod shape-determining protein MreC YP_004339503.1 KEGG: cpe:PCP18 hypothetical protein; SPTR: NADH dehydrogenase subunit 2; manually curated YP_004339504.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311; IPR001460; IPR017790; KEGG: ddf:DEFDS_1161 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Peptidoglycan glycosyltransferase; TIGRFAM: Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2 YP_004339505.1 COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: dba:Dbac_1759 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type 4 fimbrial assembly protein pilC; PFAM: Bacterial type II secretion system protein F domain YP_004339506.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR003593; IPR001482; IPR006321; KEGG: ddf:DEFDS_1110 twitching motility protein PilT; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Twitching motility protein PilT; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_004339507.1 COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831; IPR001482; IPR013374; IPR013369; KEGG: ddf:DEFDS_1109 type IV pilus assembly protein PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SPTR: Type IV pilus assembly protein PilB; TIGRFAM: ATPase, type IV, pilus assembly, PilB; Type II secretion system GspE; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E YP_004339508.1 COGs: COG0169 Shikimate 5-dehydrogenase; HAMAP: Shikimate, quinate/shikimate dehydrogenase; InterPro IPR022893; IPR013708; IPR006151; IPR011342; KEGG: aae:aq_901 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: Shikimate dehydrogenase; TIGRFAM: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase YP_004339509.1 COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: tte:TTE0535 ATPase or kinase; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: Predicted ATPase or kinase; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family YP_004339510.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dap:Dacet_1894 glycosyl transferase family 9; PFAM: Glycosyl transferase, family 9; SPTR: Glycosyl transferase family 9; PFAM: Glycosyltransferase family 9 (heptosyltransferase) YP_004339511.1 COGs: COG2206 HD-GYP domain; InterPro IPR003607; IPR006674; IPR006675; KEGG: net:Neut_2201 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004339512.1 COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: dat:HRM2_11890 putative signal transduction protein (HD domain protein); PFAM: Metal-dependent hydrolase HDOD; SPTR: Putative signal transduction protein (HD domain protein); PFAM: HDOD domain YP_004339513.1 COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: ddf:DEFDS_1452 arsenate reductase (glutaredoxin); PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Arsenate reductase (Glutaredoxin); PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin) YP_004339514.1 COGs: COG1420 Transcriptional regulator of heat shock gene; HAMAP: Winged helix-turn-helix transcription repressor, HrcA; InterPro IPR002571; IPR021153; KEGG: cbt:CLH_0856 heat-inducible transcription repressor; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal; SPTR: Heat-inducible transcription repressor hrcA; TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; PFAM: HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA YP_004339515.1 COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: chy:CHY_0414 GrpE protein; PFAM: GrpE nucleotide exchange factor; SPTR: Protein grpE; PFAM: GrpE YP_004339516.1 COGs: COG0443 Molecular chaperone; HAMAP: Chaperone DnaK; InterPro IPR012725; IPR013126; KEGG: ddf:DEFDS_2114 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein dnaK; TIGRFAM: Chaperone DnaK; PFAM: Hsp70 protein; TIGRFAM: Fe-S protein assembly chaperone HscA; chaperone protein DnaK YP_004339517.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; HAMAP: Chaperone DnaJ; InterPro IPR001623; IPR012724; IPR001305; IPR002939; KEGG: ddf:DEFDS_2113 molecular chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich domain; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Molecular chaperone DnaJ; TIGRFAM: Chaperone DnaJ; PFAM: DnaJ central domain (4 repeats); DnaJ C terminal region; DnaJ domain; TIGRFAM: chaperone protein DnaJ YP_004339518.1 COGs: COG4399 conserved hypothetical protein; InterPro IPR007383; KEGG: dak:DaAHT2_0433 protein of unknown function DUF445; PFAM: Protein of unknown function DUF445, transmembrane; SPTR: Putative uncharacterized protein yheB; PFAM: Protein of unknown function (DUF445) YP_004339519.1 COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR004518; IPR011551; KEGG: ddf:DEFDS_1789 MazG family protein; PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core; SPTR: MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein YP_004339520.1 COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: gsu:GSU0237 MaoC-like domain-containing protein; PFAM: MaoC-like dehydratase; PRIAM: Enoyl-CoA hydratase; SPTR: MaoC-like dehydratase; PFAM: MaoC like domain YP_004339521.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000014; IPR001610; IPR000160; IPR001633; IPR 003018; IPR013767; KEGG: ddf:DEFDS_1856 hypothetical protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; GAF; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; SPTR: Putative uncharacterized protein; TIGRFAM: Diguanylate cyclase, predicted; PAS; manually curated; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004339522.1 InterPro IPR000014; IPR013767; KEGG: saf:SULAZ_0401 PAS fold family protein; PFAM: PAS fold; SMART: PAS; SPTR: PAS fold family protein; TIGRFAM: PAS; PFAM: PAS fold; TIGRFAM: PAS domain S-box YP_004339523.1 COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; InterPro IPR003000; KEGG: tal:Thal_0255 silent information regulator protein Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: Silent information regulator protein Sir2; PFAM: Sir2 family YP_004339524.1 COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: pmx:PERMA_0896 L-fuculose phosphate aldolase; PFAM: Class II aldolase/adducin, N-terminal; SPTR: L-fuculose phosphate aldolase; PFAM: Class II Aldolase and Adducin N-terminal domain YP_004339525.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: ddf:DEFDS_1598 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: Putative uncharacterized protein; PFAM: SNARE associated Golgi protein YP_004339526.1 COGs: COG0358 DNA primase; InterProIPR002694; IPR006171; IPR013264; IPR019475; IPR 006295; KEGG: has:Halsa_1660 DNA primase; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core YP_004339527.1 COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR007696; IPR000432; IPR002625; KEGG: saf:SULAZ_0313 MutS2 protein; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; SPTR: MutS2 protein; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein YP_004339528.1 COGs: COG2206 HD-GYP domain; InterPro IPR003607; IPR006674; KEGG: cbe:Cbei_4185 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; PFAM: HD domain YP_004339529.1 COGs: COG2109 ATP:corrinoid adenosyltransferase; InterPro IPR003724; KEGG: dat:HRM2_02250 CobO; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; SPTR: Cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase YP_004339530.1 COGs: COG3381 Uncharacterized component of anaerobic dehydrogenase; KEGG: fpl:Ferp_0121 cytoplasmic chaperone TorD family protein; SPTR: Cytoplasmic chaperone TorD family protein; PFAM: Nitrate reductase delta subunit; TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone YP_004339531.1 COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; HAMAP: Aspartate carbamoyltransferase, eukaryotic; InterPro IPR002082; IPR006132; IPR006131; KEGG: cha:CHAB381_0964 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase YP_004339532.1 COGs: COG1660 P-loop-containing kinase; HAMAP: ATPase, P-loop-containing; InterPro IPR005337; KEGG: chd:Calhy_2303 hypothetical protein; SPTR: UPF0042 nucleotide-binding protein Csac_1160; PFAM: P-loop ATPase protein family YP_004339533.1 COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178; KEGG: fnu:FN1491 PTS system, IIA component; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; SPTR: Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_004339534.1 COGs: COG1544 Ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: toc:Toce_1603 SSU ribosomal protein S30P; sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; SPTR: SSU ribosomal protein S30P; sigma 54 modulation protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein YP_004339535.1 COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: hor:Hore_18360 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; SPTR: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor YP_004339536.1 InterPro IPR001623; KEGG: hya:HY04AAS1_0589 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Heat shock protein DnaJ domain protein; PFAM: DnaJ domain YP_004339537.1 COGs: COG1066 ATP-dependent serine protease; InterPro IPR003593; KEGG: cth:Cthe_1786 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein RadA; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA repair protein RadA YP_004339538.1 COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006218; IPR006269; KEGG: aae:aq_085 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase YP_004339539.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: sat:SYN_00415 permease; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease; PFAM: Predicted permease YjgP/YjgQ family YP_004339540.1 COGs: COG1806 conserved hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; InterPro IPR005177; KEGG: gme:Gmet_3384 hypothetical protein; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted; SPTR: Putative uncharacterized protein ydiA; PFAM: Domain of unknown function (DUF299) YP_004339541.1 KEGG: cgr:CAGL0E02255g hypothetical protein; SPTR: Similar to uniprot|Q08245 Saccharomyces cerevisiae YOL109w ZEO1; PFAM: Synuclein YP_004339542.1 KEGG: tva:TVAG_247100 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein, putative YP_004339543.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: gwc:GWCH70_2491 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF20 YP_004339544.1 COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR000728; IPR010918; IPR004733; KEGG: tte:TTE0590 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase YP_004339545.1 COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376; IPR004607; KEGG: ddf:DEFDS_0168 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; PRIAM: Phosphoribosylglycinamide formyltransferase; SPTR: Phosphoribosylglycinamide formyltransferase; TIGRFAM: Phosphoribosylglycinamide formyltransferase; manually curated; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent YP_004339546.1 COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; InterPro IPR018027; IPR004413; IPR006075; KEGG: tye:THEYE_A1151 glu-tRNAGln amidotransferase subunit B; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; SMART: Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit YP_004339547.1 COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680; IPR004722; KEGG: tye:THEYE_A1239 dihydroorotase; PFAM: Amidohydrolase 1; PRIAM: Dihydroorotase; SPTR: Dihydroorotase; TIGRFAM: Dihydroorotase; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type YP_004339548.1 COGs: COG0777 Acetyl-CoA carboxylase beta subunit; HAMAP: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; InterPro IPR000438; IPR000022; KEGG: nis:NIS_1198 acetyl-CoA carboxylase subunit beta; PFAM: Carboxyl transferase; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-CoA carboxylase, carboxyl transferase subunit beta; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_004339549.1 KEGG: tca:658647 similar to Mycbp associated protein; SPTR: Protein jag YP_004339550.1 COGs: COG1254 Acylphosphatase; HAMAP: Acylphosphatase; InterPro IPR001792; KEGG: fpl:Ferp_1517 acylphosphatase; PFAM: Acylphosphatase-like; SPTR: Acylphosphatase; PFAM: Acylphosphatase YP_004339551.1 InterPro IPR019734; IPR013105; KEGG: nis:NIS_0252 hypothetical protein; PFAM: Tetratricopeptide TPR2; SPTR: Putative uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004339552.1 COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR000644; IPR001347; IPR004800; KEGG: ddf:DEFDS_1039 arabinose-5-phosphate isomerase; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core; PRIAM: Arabinose-5-phosphate isomerase; SMART: Cystathionine beta-synthase, core; SPTR: Arabinose-5-phosphate isomerase; TIGRFAM: KpsF/GutQ; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein YP_004339553.1 COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023; IPR006549; KEGG: sat:SYN_00949 3-deoxy-manno-octulosonate-8-phosphatase; PRIAM: 3-deoxy-manno-octulosonate-8-phosphatase; SPTR: 3-deoxy-manno-octulosonate-8-phosphatase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA YP_004339554.1 InterPro IPR010664; KEGG: tye:THEYE_A0230 hypothetical protein; PFAM: Lipopolysccharide assembly, LptC-related; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239) YP_004339555.1 COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro IPR006264; IPR001986; KEGG: hor:Hore_10370 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: Enolpyruvate transferase domain; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase YP_004339556.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: npu:Npun_R2409 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Serine 3-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004339557.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; IPR013163; KEGG: gur:Gura_3308 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; Cache, type 2; PRIAM: Diguanylate kinase; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: Cache domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004339558.1 KEGG: ddf:DEFDS_0767 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339559.1 COGs: COG0145 N-methylhydantoinase A/acetone carboxylase beta subunit; InterPro IPR008040; IPR002821; KEGG: ddf:DEFDS_0768 N-methylhydantoinase A; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: N-methylhydantoinase A; PFAM: Hydantoinase/oxoprolinase; Hydantoinase/oxoprolinase N-terminal region YP_004339560.1 COGs: COG0146 N-methylhydantoinase B/acetone carboxylase alpha subunit; InterPro IPR003692; KEGG: ddf:DEFDS_0769 N-methylhydantoinase B; PFAM: Hydantoinase B/oxoprolinase; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: N-methylhydantoinase B; PFAM: Hydantoinase B/oxoprolinase YP_004339561.1 COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: ddf:DEFDS_0770 C4-dicarboxylate transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 7, bacteria; SPTR: C4-dicarboxylate transporter, substrate-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 7 YP_004339562.1 COGs: COG4665 TRAP-type mannitol/chloroaromatic compound transport system small permease component; InterPro IPR007387; KEGG: ddf:DEFDS_0771 C4-dicarboxylate transporter small subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; SPTR: C4-dicarboxylate transporter, small subunit; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component YP_004339563.1 COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR010656; IPR004681; KEGG: ddf:DEFDS_0772 C4-dicarboxylate transporter large subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: C4-dicarboxylate transporter, large subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit YP_004339564.1 COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; InterPro IPR003000; KEGG: nam:NAMH_0804 NAD-dependent deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: NAD-dependent deacetylase; PFAM: Sir2 family YP_004339565.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; HAMAP: Glutaminyl-tRNA synthetase, bacterial; InterPro IPR022861; IPR020058; IPR020059; IPR004514; KEGG: cth:Cthe_0917 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; PRIAM: Glutamine--tRNA ligase; SPTR: Glutaminyl-tRNA synthetase; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutamyl-tRNA synthetase, archaeal and eukaryotic family; glutaminyl-tRNA synthetase YP_004339566.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: SecA protein; InterPro IPR011115; IPR011130; IPR000185; IPR011116; KEGG: ddf:DEFDS_0046 preprotein translocase subunit A; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SPTR: Protein translocase subunit secA; TIGRFAM: SecA protein; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit YP_004339567.1 COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: mse:Msed_1586 methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: Methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_004339568.1 COGs: COG2859 conserved hypothetical protein; InterPro IPR007497; KEGG: sbn:Sbal195_2868 hypothetical protein; PFAM: Protein of unknown function DUF541; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF541) YP_004339569.1 InterPro IPR001401; KEGG: sfu:Sfum_2910 dynamin family protein; PFAM: Dynamin, GTPase domain; SPTR: Dynamin family protein; PFAM: Dynamin family YP_004339570.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; IPR013767; IPR000014; KEGG: drm:Dred_1552 diguanylate cyclase with PAS/PAC sensor; PFAM: Diguanylate cyclase, predicted; PAS fold; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004339571.1 COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase; InterPro IPR000682; KEGG: sul:SYO3AOP1_0069 tRNA (adenine-N(1)-)-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: tRNA (Adenine-N(1)-)-methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit YP_004339572.1 COGs: COG1001 Adenine deaminase; HAMAP: Adenine deaminase; InterPro IPR006679; IPR006680; KEGG: apo:Arcpr_1618 adenine deaminase; PFAM: Amidohydrolase 1; PRIAM: Adenine deaminase; SPTR: Adenine deaminase; TIGRFAM: Adenine deaminase; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase YP_004339573.1 COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; InterPro IPR001279; KEGG: ppd:Ppro_1945 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily YP_004339574.1 COGs: COG4087 Soluble P-type ATPase; InterPro IPR013200; KEGG: slp:Slip_1017 haloacid dehalogenase domain protein hydrolase; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: Haloacid dehalogenase domain protein hydrolase; PFAM: haloacid dehalogenase-like hydrolase YP_004339575.1 COGs: COG0372 Citrate synthase; InterPro IPR002020; KEGG: ddf:DEFDS_0814 citrate synthase; PFAM: Citrate synthase-like; PRIAM: Citrate (Si)-synthase; SPTR: Citrate synthase; PFAM: Citrate synthase; TIGRFAM: citrate (Si)-synthase, eukaryotic YP_004339576.1 COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein; InterPro IPR007197; KEGG: ate:Athe_1947 radical SAM domain protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily YP_004339577.1 COGs: COG0465 ATP-dependent Zn protease; InterProIPR003593; IPR011546; IPR003959; IPR000642; IPR 005936; KEGG: gme:Gmet_1890 FtsH peptidase; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: FtsH peptidase. Metallo peptidase. MEROPS family M41; TIGRFAM: Peptidase M41, FtsH; PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_004339578.1 COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489; IPR006390; KEGG: dth:DICTH_0461 dihydropteroate synthase; PFAM: Pterin-binding; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase YP_004339579.1 InterPro IPR001845; KEGG: fno:Fnod_1486 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Putative transcriptional regulator, ArsR family protein; PFAM: Bacterial regulatory protein, arsR family YP_004339580.1 InterPro IPR002781; KEGG: mbu:Mbur_0246 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE YP_004339581.1 COGs: COG2191 Formylmethanofuran dehydrogenase subunit E; InterPro IPR003814; KEGG: ddf:DEFDS_0693 hypothetical protein; PFAM: Formylmethanofuran dehydrogenase, subunit E domain; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic dksA/traR C4-type zinc finger; FmdE, Molybdenum formylmethanofuran dehydrogenase operon YP_004339582.1 KEGG: cpc:Cpar_1279 protein of unknown function DUF134; SPTR: UPF0251 protein Cpar_1279 YP_004339583.1 COGs: COG1433 conserved hypothetical protein; KEGG: nam:NAMH_0801 iron-molybdenum cofactor-binding protein; SPTR: Iron-molybdenum cofactor-binding protein; PFAM: Dinitrogenase iron-molybdenum cofactor YP_004339584.1 COGs: COG2067 Long-chain fatty acid transport protein; InterPro IPR005017; KEGG: tbd:Tbd_2180 long-chain fatty acid ABC transporter; PFAM: Membrane protein, aromatic hydrocarbon degradation; SPTR: Putative Long-chain fatty acid transport protein; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX) YP_004339585.1 COGs: COG2716 Glycine cleavage system regulatory protein; InterPro IPR002912; KEGG: ddf:DEFDS_2129 glycine cleavage system transcriptional repressor; PFAM: Amino acid-binding ACT; SPTR: Glycine cleavage system transcriptional repressor; PFAM: ACT domain YP_004339586.1 COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: dap:Dacet_2263 peptide deformylase; PFAM: Formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase 2; TIGRFAM: Formylmethionine deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_004339587.1 COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: Excinuclease ABC, B subunit; InterProIPR014001; IPR001650; IPR004807; IPR006935; IPR 001943; KEGG: ttm:Tthe_0626 excinuclease ABC, B subunit; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: UvrABC system protein B; TIGRFAM: Excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit YP_004339588.1 COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003593; IPR003439; KEGG: fno:Fnod_0474 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_004339589.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825; KEGG: kol:Kole_0587 SufBD protein; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: SufBD protein; PFAM: Uncharacterized protein family (UPF0051) YP_004339590.1 InterPro IPR011017; KEGG: pca:Pcar_0249 hypothetical protein; SMART: TRASH; SPTR: Putative uncharacterized protein YP_004339591.1 InterPro IPR007016; KEGG: cbi:CLJ_B3364 exopolysaccharide biosynthesis family protein; PFAM: O-antigen ligase-related; SPTR: O-antigen polymerase; PFAM: O-Antigen ligase YP_004339592.1 COGs: COG0176 Transaldolase; HAMAP: Transaldolase 3B, putative; InterPro IPR022999; IPR001585; IPR004731; KEGG: mfe:Mefer_0846 putative translaldolase; PFAM: Transaldolase; SPTR: Probable transaldolase; TIGRFAM: Transaldolase 3A/3B; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family YP_004339593.1 COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: Nucleoside-triphosphatase; InterPro IPR020922; IPR002637; KEGG: csc:Csac_0986 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase; PFAM: Ham1-like protein; PRIAM: Nucleoside-triphosphatase; SPTR: Nucleoside-triphosphatase; TIGRFAM: Ham1-like protein; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_004339594.1 COGs: COG1934 conserved hypothetical protein; InterPro IPR005653; IPR014340; KEGG: sul:SYO3AOP1_0206 lipopolysaccharide transport periplasmic protein LptA; PFAM: Organic solvent tolerance-like, N-terminal; SPTR: Lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: Lipopolysccharide assembly, LptA; PFAM: OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA YP_004339595.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR020058; IPR004527; KEGG: tye:THEYE_A2003 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: Glutamate--tRNA ligase; SPTR: Glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_004339596.1 InterPro IPR004664; KEGG: hap:HAPS_1376 ribonuclease BN; PFAM: Ribonuclease BN-related; SPTR: tRNA-processing RNAse BN; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN) YP_004339597.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478; IPR001254; IPR011782; KEGG: sat:SYN_01706 endopeptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: Endopeptidase; TIGRFAM: Peptidase S1C, Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family YP_004339598.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: chy:CHY_0873 putative lipoprotein; PFAM: Secretion protein HlyD; SPTR: Putative lipoprotein; PFAM: HlyD family secretion protein YP_004339599.1 COGs: COG1515 Deoxyinosine 3'endonuclease (endonuclease V); HAMAP: Endonuclease V; InterPro IPR007581; KEGG: pmx:PERMA_1074 endonuclease V (deoxyinosine 3'endonuclease)(deoxyribonuclease V) (DNase V); PFAM: Endonuclease V; PRIAM: Deoxyribonuclease V; SPTR: Endonuclease V 2; PFAM: Endonuclease V YP_004339600.1 COGs: COG2200 FOG: EAL domain; InterPro IPR001789; IPR000014; IPR001633; IPR013655; KEGG: sdl:Sdel_0748 PAS sensor protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Signal transduction response regulator, receiver domain; PAS fold-3; SMART: Diguanylate phosphodiesterase, EAL domain; Signal transduction response regulator, receiver domain; PAS; SPTR: PAS sensor protein; TIGRFAM: PAS; PFAM: EAL domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box YP_004339601.1 COGs: COG4231 Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits; InterPro IPR002880; IPR011766; IPR001450; KEGG: tye:THEYE_A0022 indolepyruvate oxidoreductase subunit IorA; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; 4Fe-4S binding domain; PRIAM: Indolepyruvate ferredoxin oxidoreductase; SPTR: Indolepyruvate oxidoreductase subunit IorA; PFAM: domain; 4Fe-4S binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit YP_004339602.1 InterPro IPR019752; KEGG: tye:THEYE_A0023 indolepyruvate oxidoreductase subunit IorB; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: Indolepyruvate oxidoreductase subunit IorB; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase YP_004339603.1 COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: tye:THEYE_A0024 phenylacetate-coenzyme A ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: Phenylacetate-coenzyme A ligase; PFAM: AMP-binding enzyme YP_004339604.1 COGs: COG1291 Flagellar motor component; KEGG: gau:GAU_0296 chemotaxis MotA protein; SPTR: Chemotaxis MotA protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004339605.1 COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: har:HEAR1298 flagellar motor protein MotB; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Chemotaxis protein MotB (Motility protein B); PFAM: OmpA family YP_004339606.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; HAMAP: Acetate-CoA ligase; InterPro IPR011904; IPR000873; KEGG: syf:Synpcc7942_1352 acetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetate--CoA ligase; SPTR: Acetyl-coenzyme A synthetase; TIGRFAM: Acetate-CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase; acetoacetyl-CoA synthase YP_004339607.1 KEGG: pca:Pcar_1737 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF364) YP_004339608.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593; IPR003439; KEGG: ddf:DEFDS_0824 molybdate ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Molybdate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Molybdate ABC transporter, ATP-binding protein; PFAM: ABC transporter; TOBE domain; TIGRFAM: molybdenum-pterin binding domain YP_004339609.1 COGs: COG4149 ABC-type molybdate transport system permease component; InterPro IPR000515; KEGG: ddf:DEFDS_0826 molybdate ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Molybdate ABC transporter, permease; PFAM: Binding-protein-dependent transport system inner membrane component YP_004339610.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR013099; IPR003148; IPR006037; KEGG: sun:SUN_1579 potassium channel protein; PFAM: Regulator of K+ conductance, N-terminal; Ion transport 2; Regulator of K+ conductance, C-terminal; SPTR: Potassium channel protein; PFAM: TrkA-N domain; Ion channel; TrkA-C domain YP_004339611.1 COGs: COG1578 conserved hypothetical protein; InterPro IPR002791; KEGG: dol:Dole_1580 hypothetical protein; PFAM: Domain of unknown function DUF89; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF89 YP_004339612.1 COGs: COG0164 Ribonuclease HII; InterPro IPR001352; IPR003828; KEGG: csh:Closa_2487 protein of unknown function DUF208; PFAM: Protein of unknown function DUF208; Ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Uncharacterized protein conserved in bacteria; PFAM: Uncharacterized BCR, COG1636; Ribonuclease HII YP_004339613.1 COGs: COG2187 conserved hypothetical protein; KEGG: tye:THEYE_A1962 Uma3; SPTR: Uma3; PFAM: Zeta toxin YP_004339614.1 COGs: COG0854 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; InterPro IPR004569; KEGG: pmx:PERMA_0448 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxine 5'-phosphate synthase 2; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase YP_004339615.1 COGs: COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); HAMAP: Holo-[acyl carrier protein] synthase; InterPro IPR002582; IPR008278; IPR004568; KEGG: ctl:CTLon_0351 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Holo-[acyl-carrier-protein] synthase; TIGRFAM: Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase YP_004339616.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221; IPR004101; IPR001645; KEGG: pmo:Pmob_1456 FolC bifunctional protein; PFAM: Mur ligase, C-terminal; Mur ligase, central; PRIAM: Tetrahydrofolate synthase; SPTR: Putative uncharacterized protein; TIGRFAM: Folylpolyglutamate synthetase; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_004339617.1 COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: dth:DICTH_1986 PorB subunit of pyruvate:flavodoxin oxidoreductase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate synthase; SPTR: PorB subunit of pyruvate:flavodoxin oxidoreductase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004339618.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880; KEGG: csc:Csac_1460 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; PRIAM: Pyruvate synthase; SPTR: Pyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: domain YP_004339619.1 COGs: COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase delta subunit; InterPro IPR001450; IPR011898; KEGG: hor:Hore_20730 pyruvate ferredoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S binding domain; SPTR: Pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family YP_004339620.1 COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; IPR011894; KEGG: dth:DICTH_1983 pyruvate synthase subunit PorC; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; PRIAM: Pyruvate synthase; SPTR: Pyruvate synthase subunit PorC; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family YP_004339621.1 COGs: COG0353 Recombinational DNA repair protein (RecF pathway); InterPro IPR006171; IPR015967; IPR000093; KEGG: tte:TTE0041 recombination protein RecR; SMART: Toprim domain; SPTR: Recombination protein recR; TIGRFAM: RecR protein; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR YP_004339622.1 COGs: COG0718 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0133; InterPro IPR004401; KEGG: ddf:DEFDS_0142 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: UPF0133 protein DEFDS_0142; TIGRFAM: Uncharacterised protein family UPF0133; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family YP_004339623.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003593; IPR003959; IPR012763; KEGG: brm:Bmur_1175 DNA polymerase III, subunits gamma and tau; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, subunit gamma and tau YP_004339624.1 COGs: COG3434 signal transduction protein containing EAL and modified HD-GYP domains; InterPro IPR001633; IPR013976; KEGG: dhd:Dhaf_3594 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, EAL domain; SPTR: Putative uncharacterized protein; PFAM: EAL domain; HDOD domain YP_004339625.1 COGs: COG2143 Thioredoxin-related protein; KEGG: hya:HY04AAS1_0428 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339626.1 KEGG: ddf:DEFDS_1681 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Nitrous oxide-stimulated promoter YP_004339627.1 COGs: COG0151 Phosphoribosylamine-glycine ligase; HAMAP: Phosphoribosylglycinamide synthetase; InterPro IPR000115; IPR020562; IPR020561; IPR020560; KEGG: ddf:DEFDS_1188 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Phosphoribosylamine--glycine ligase; TIGRFAM: Phosphoribosylglycinamide synthetase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase YP_004339628.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660; IPR004089; KEGG: tye:THEYE_A1474 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: Methyl-accepting chemotaxis protein; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004339629.1 COGs: COG0785 Cytochrome c biogenesis protein; InterPro IPR003834; KEGG: aoe:Clos_2717 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane domain; SPTR: Cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome C biogenesis protein transmembrane region YP_004339630.1 COGs: COG0455 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: cce:Ccel_2029 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004339631.1 COGs: COG1419 Flagellar GTP-binding protein; InterPro IPR003593; IPR000897; IPR020006; KEGG: nam:NAMH_1350 flagellar biosynthesis regulator FlhF; PFAM: Signal recognition particle, SRP54 subunit, GTPase; SMART: Signal recognition particle, SRP54 subunit, GTPase; ATPase, AAA+ type, core; SPTR: Flagellar biosynthesis protein flhf flagella associated gtp-bindingprotein; TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF YP_004339632.1 COGs: COG1298 Flagellar biosynthesis pathway component FlhA; InterPro IPR001712; IPR006301; KEGG: ddf:DEFDS_0414 flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP; SPTR: Flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA YP_004339633.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807; KEGG: ccb:Clocel_0314 Cl-channel voltage-gated family protein; PFAM: Chloride channel, voltage gated; SPTR: Cl-channel voltage-gated family protein; PFAM: Voltage gated chloride channel YP_004339634.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: har:HEAR3279 hypothetical protein; PFAM: Uncharacterised protein family UPF0118; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF20 YP_004339635.1 InterPro IPR002509; KEGG: ddf:DEFDS_0334 polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase YP_004339636.1 COGs: COG2013 conserved hypothetical protein; InterPro IPR002838; KEGG: mae:Maeo_1108 hypothetical protein; PFAM: Protein of unknown function DUF124; SPTR: Putative uncharacterized protein; TIGRFAM: Protein of unknown function DUF124; PFAM: Protein of unknown function DUF124; TIGRFAM: conserved hypothetical protein TIGR00266 YP_004339637.1 InterPro IPR003369; KEGG: pmx:PERMA_1661 twin-arginine translocation system component TatB; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; SPTR: Twin-arginine translocation system component TatB; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_004339638.1 COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033; IPR019822; KEGG: cha:CHAB381_1092 twin arginine-targeting protein translocase TatC; PFAM: Sec-independent periplasmic protein translocase; SPTR: Twin arginine-targeting protein translocase TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC YP_004339639.1 COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627; IPR000045; KEGG: geo:Geob_3081 peptidase A24A domain protein; PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV; PRIAM: Prepilin peptidase; SPTR: Peptidase A24A domain protein; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family YP_004339640.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: dtu:Dtur_1307 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family YP_004339641.1 COGs: COG0815 Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; InterPro IPR004563; IPR003010; KEGG: tye:THEYE_A0012 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Apolipoprotein N-acyltransferase; TIGRFAM: Apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase YP_004339642.1 COGs: COG0223 Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; InterPro IPR005794; IPR002376; IPR005793; KEGG: saf:SULAZ_0409 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; PRIAM: Methionyl-tRNA formyltransferase; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: Methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_004339643.1 COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: nis:NIS_0166 peptide deformylase; PFAM: Formylmethionine deformylase; SPTR: Peptide deformylase; TIGRFAM: Formylmethionine deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_004339644.1 COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR001453; KEGG: ddf:DEFDS_0040 competence damage-inducible protein A; PFAM: Molybdopterin binding; SMART: Molybdopterin binding; SPTR: CinA-like protein; PFAM: Probable molybdopterin binding domain; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; molybdenum cofactor synthesis domain YP_004339645.1 InterPro IPR002781; KEGG: ddf:DEFDS_0184 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE YP_004339646.1 COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR005746; IPR013766; KEGG: sta:STHERM_c01270 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_004339647.1 COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR003954; IPR000504; KEGG: drt:Dret_1753 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain; RNA recognition motif domain, eukaryote; SPTR: RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YP_004339648.1 COGs: COG2107 periplasmic solute-binding protein; KEGG: pmx:PERMA_0868 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Putative periplasminc binding protein (DUF178) YP_004339649.1 COGs: COG2081 flavoprotein; InterPro IPR004792; KEGG: ipo:Ilyop_0738 HI0933 family protein; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; SPTR: Pyridine nucleotide-disulfide oxidoreductase; TIGRFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family YP_004339650.1 KEGG: zro:ZYRO0F12584g hypothetical protein; SPTR: ZYRO0F12584p YP_004339651.1 COGs: COG1232 Protoporphyrinogen oxidase; InterPro IPR004572; IPR002937; KEGG: gsu:GSU0012 protoporphyrinogen oxidase; PFAM: Amine oxidase; PRIAM: Protoporphyrinogen oxidase; SPTR: Protoporphyrinogen oxidase; TIGRFAM: Protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase YP_004339652.1 COGs: COG0174 Glutamine synthetase; InterPro IPR004809; IPR008147; IPR008146; KEGG: ddf:DEFDS_1474 glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp; PRIAM: Glutamate--ammonia ligase; SPTR: Glutamine synthetase; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I YP_004339653.1 COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterPro IPR003018; IPR003593; IPR002078; IPR002197; KEGG: tal:Thal_0396 transcriptional regulator, NifA subfamily, fis family; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; GAF; SPTR: Transcriptional regulator (NtrC family) protein; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: Nif-specific regulatory protein YP_004339654.1 COGs: COG1377 Flagellar biosynthesis pathway component FlhB; InterPro IPR006135; KEGG: sul:SYO3AOP1_0793 FlhB domain protein; PFAM: Type III secretion exporter; SPTR: FlhB domain protein; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flhB C-terminus-related protein YP_004339655.1 COGs: COG1452 Organic solvent tolerance protein OstA; InterPro IPR007543; KEGG: hya:HY04AAS1_0437 organic solvent tolerance protein; PFAM: Organic solvent tolerance protein, C-terminal; SPTR: Putative uncharacterized protein; PFAM: Organic solvent tolerance protein YP_004339656.1 InterPro IPR005180; KEGG: plt:Plut_0488 hypothetical protein; PFAM: Domain of unknown function DUF302; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF302 YP_004339657.1 KEGG: tin:Tint_1170 methyl-accepting chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis sensory transducer YP_004339658.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: vfm:VFMJ11_A0073 toxin corregulated pilus biosynthesis protein I; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: Hypothetical methyl-accepting chemotaxis protein; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004339659.1 COGs: COG2206 HD-GYP domain; InterPro IPR003607; IPR006674; KEGG: tpd:Teth39_1760 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; PFAM: HD domain YP_004339660.1 KEGG: sat:SYN_01867 hypothetical protein; SPTR: Hypothetical exported protein YP_004339661.1 COGs: COG0863 DNA modification methylase; InterPro IPR002941; KEGG: csc:Csac_2754 DNA methylase N-4/N-6 domain-containing protein; PFAM: DNA methylase N-4/N-6; SPTR: Possible phage DNA methylase; PFAM: DNA methylase YP_004339662.1 KEGG: hmo:HM1_0600 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339663.1 InterPro IPR009773; KEGG: sul:SYO3AOP1_0684 crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease; PFAM: Lactococcus phage M3 protein YP_004339664.1 KEGG: sat:SYN_01859 hypothetical protein; SPTR: Hypothetical membrane protein YP_004339665.1 KEGG: glo:Glov_0321 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: TraL protein; TIGRFAM: type IV conjugative transfer system protein TraL YP_004339666.1 KEGG: glo:Glov_0320 conserved hypothetical sex pilus assembly and synthesis protein; SPTR: Conserved hypothetical sex pilus assembly and synthesis protein; PFAM: TraE protein; TIGRFAM: type IV conjugative transfer system protein TraE YP_004339667.1 KEGG: sat:SYN_01862 hypothetical protein; SPTR: Hypothetical exported protein; PFAM: Protein of unknown function (DUF1154); TraK protein YP_004339668.1 KEGG: sat:SYN_01863 pilus assembly protein; SPTR: Pilus assembly protein; PFAM: Bacterial conjugation TrbI-like protein YP_004339669.1 InterPro IPR014118; KEGG: glo:Glov_0317 hypothetical protein; PFAM: Type IV secretion system, TraV; SPTR: Putative uncharacterized protein; PFAM: Type IV conjugative transfer system lipoprotein (TraV); TIGRFAM: type IV conjugative transfer system lipoprotein TraV YP_004339670.1 KEGG: dat:HRM2_33480 DsbC; SPTR: DsbC YP_004339671.1 KEGG: ppd:Ppro_3770 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339672.1 KEGG: ppd:Ppro_0245 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339673.1 KEGG: sat:SYN_01891 hypothetical protein; SPTR: Hypothetical membrane protein YP_004339674.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: smf:Smon_0227 YadA domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB; PFAM: OmpA family YP_004339675.1 InterPro IPR019533; KEGG: glo:Glov_0308 type IV secretory protease; PFAM: Peptidase S26, conserved region; SPTR: Type IV secretory protease; PFAM: Peptidase S26 YP_004339676.1 KEGG: ppd:Ppro_0197 glutaredoxin 2; SPTR: Glutaredoxin 2; PFAM: Glutaredoxin-like domain (DUF836) YP_004339677.1 KEGG: sat:SYN_01892 putative cytoplasmic protein; SPTR: Hypothetical cytosolic protein YP_004339678.1 KEGG: glo:Glov_0313 conserved hypothetical cytosolic protein; SPTR: Conserved hypothetical cytosolic protein; manually curated YP_004339679.1 InterPro IPR009649; KEGG: sat:SYN_01869 conjugal DNA transfer protein; PFAM: TraU; SPTR: Conjugal DNA transfer protein; PFAM: TraU protein YP_004339680.1 InterPro IPR019106; KEGG: sat:SYN_01870 putative cytoplasmic protein; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; SPTR: Hypothetical cytosolic protein; PFAM: Type-F conjugative transfer system pilin assembly protein; TIGRFAM: type-F conjugative transfer system pilin assembly protein TrbC YP_004339681.1 KEGG: edi:EDI_024060 trichohyalin; SPTR: Glutamate--cysteine ligase/gamma-glutamylcysteine synthetase YP_004339682.1 KEGG: plu:plu3482 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339683.1 KEGG: gsu:GSU2154 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: YqaJ-like viral recombinase domain YP_004339686.1 KEGG: hpy:HP1371 type III restriction enzyme R protein; SPTR: Type III restriction enzyme R protein YP_004339687.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; InterPro IPR003583; KEGG: abu:Abu_1382 exodeoxyribonuclease V, alpha subunit; SPTR: Exodeoxyribonuclease V, alpha subunit; TIGRFAM: helicase, putative, RecD/TraA family YP_004339688.1 KEGG: cbe:Cbei_3357 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339689.1 InterPro IPR007404; KEGG: gmc:GY4MC1_2110 membrane-bound metal-dependent hydrolase; PFAM: Protein of unknown function DUF457, transmembrane; SPTR: Putative uncharacterized protein; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457) YP_004339690.1 KEGG: cac:CA_C2829 hypothetical protein; SPTR: Predicted membrane protein YP_004339691.1 KEGG: bfo:BRAFLDRAFT_122970 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339692.1 COGs: COG0717 Deoxycytidine deaminase; InterPro IPR011962; IPR008180; KEGG: app:CAP2UW1_4029 deoxycytidine triphosphate deaminase; PFAM: DeoxyUTP pyrophosphatase domain; SPTR: Deoxycytidine triphosphate deaminase; TIGRFAM: Deoxycytidine triphosphate deaminase; PFAM: dUTPase; TIGRFAM: deoxycytidine triphosphate deaminase YP_004339693.1 KEGG: pbe:PB107019.00.0 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339694.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: lsl:LSL_1774 DNA-binding protein HU; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: DNA-binding protein HU; PFAM: Bacterial DNA-binding protein YP_004339695.1 KEGG: mcc:696228 tudor domain-containing protein 3-like YP_004339696.1 KEGG: sat:SYN_01875 DNA transfer and F pilus assembly protein; SPTR: DNA transfer and F pilus assembly protein; PFAM: TraG-like protein, N-terminal region YP_004339698.1 InterPro IPR010927; KEGG: gsu:GSU2125 hypothetical protein; PFAM: Type IV conjugative transfer system protein TraH; SPTR: Conserved domain protein; PFAM: Conjugative relaxosome accessory transposon protein YP_004339699.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095; IPR001959; KEGG: mev:Metev_0010 IS605 OrfB family transposase; PFAM: Transposase, probable, IS891/IS1136/IS1341; Transposase, IS605 OrfB, C-terminal; SPTR: Transposase, IS605 OrfB family; TIGRFAM: Transposase, IS605 OrfB, C-terminal; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region YP_004339700.1 COGs: COG1943 Transposase and inactivated derivatives; InterPro IPR002686; KEGG: ttm:Tthe_0957 transposase IS200-family protein; PFAM: Transposase IS200-like; SPTR: Transposase IS200-family protein; PFAM: Transposase IS200 like YP_004339701.1 InterPro IPR002941; KEGG: bfr:BF0639 DNA methyltransferase; PFAM: DNA methylase N-4/N-6; SPTR: DNA methyltransferase; PFAM: DNA methylase YP_004339702.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: mrb:Mrub_1382 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004339703.1 KEGG: rpt:Rpal_0201 heme exporter protein CcmB; SPTR: Heme exporter protein CcmB YP_004339704.1 InterPro IPR008874; KEGG: tye:THEYE_A0056 conjugative transfer: surface exclusion; PFAM: Enterobacterial TraT complement resistance; SPTR: TraT complement resistance family protein; PFAM: Enterobacterial TraT complement resistance protein YP_004339705.1 KEGG: fpl:Ferp_2046 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339706.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: ddf:DEFDS_0392 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339707.1 KEGG: tet:TTHERM_01054240 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339708.1 InterPro IPR009440; KEGG: sat:SYN_01836 MreB-like ATPase involved in cell division; PFAM: Plasmid segregation protein ParM/StbA; SPTR: MreB-like ATPase involved in cell division; PFAM: StbA protein YP_004339709.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344; IPR000424; KEGG: min:Minf_0754 single-stranded DNA-binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_004339710.1 KEGG: ame:409429 similar to limkain b1; SPTR: MCG141445 YP_004339711.1 KEGG: sat:SYN_01841 putative cytoplasmic protein; SPTR: Hypothetical cytosolic protein YP_004339712.1 KEGG: sat:SYN_01866 hypothetical protein; SPTR: Hypothetical exported protein YP_004339713.1 COGs: COG3451 Type IV secretory pathway VirB4 protein; InterPro IPR006141; IPR003587; IPR003586; KEGG: glo:Glov_0316 sex pilus assembly protein; SMART: Hedgehog/intein hint domain, C-terminal; Hedgehog/intein hint, N-terminal; SPTR: Sex pilus assembly protein; PFAM: F pilus assembly Type-IV secretion system for plasmid transfer; Protein of unknown function (DUF1557); TIGRFAM: type-IV secretion system protein TraC; intein N-terminal splicing region; intein C-terminal splicing region YP_004339714.1 KEGG: bcc:BCc_396 EngA; SPTR: Cyclic beta 1-2 glucan synthetase YP_004339715.1 COGs: COG0305 Replicative DNA helicase; InterPro IPR007693; KEGG: dap:Dacet_2772 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, N-terminal; SPTR: Replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain YP_004339716.1 KEGG: bha:BH1285 sporulation sigma factor SigK; SPTR: RNA polymerase sigma factor YP_004339717.1 KEGG: dat:HRM2_17340 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339718.1 InterPro IPR001387; KEGG: ctt:CtCNB1_3036 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix YP_004339719.1 InterPro IPR001387; KEGG: pmx:PERMA_1798 transcriptional regulator, xre family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, xre family; PFAM: Helix-turn-helix YP_004339720.1 COGs: COG2856 Zn peptidase; InterPro IPR010359; KEGG: gur:Gura_2215 hypothetical protein; PFAM: Protein of unknown function DUF955; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF955) YP_004339721.1 KEGG: pmx:PERMA_1866 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339722.1 KEGG: cbd:CBUD_2182 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339723.1 KEGG: tgr:Tgr7_3294 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339724.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: dvu:DVU1757 phage integrase family site specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase family protein; PFAM: Phage integrase family YP_004339725.1 COGs: COG1893 Ketopantoate reductase; InterPro IPR003710; IPR013332; IPR013752; KEGG: nde:NIDE1738 putative 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, C-terminal; Ketopantoate reductase ApbA/PanE, N-terminal; PRIAM: 2-dehydropantoate 2-reductase; SPTR: 2-dehydropantoate 2-reductase; TIGRFAM: Ketopantoate reductase ApbA/PanE; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase YP_004339726.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: drm:Dred_1772 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Short chain enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family YP_004339727.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587; IPR000994; KEGG: dth:DICTH_0894 aminopeptidase YpdF; PFAM: Peptidase M24, structural domain; Creatinase; SPTR: Aminopeptidase YpdF; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_004339728.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: tdn:Suden_1570 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase (GGDEF domain); TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004339729.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661; IPR003594; KEGG: geo:Geob_1530 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: ATP-binding region, ATPase-like:Histidine kinase A-like; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004339730.1 COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002306; IPR002305; KEGG: dal:Dalk_5223 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase YP_004339731.1 KEGG: sua:Saut_1067 diguanylate cyclase with PAS/PAC sensor; SPTR: Diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain YP_004339732.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR004549; IPR005482; IPR005481; IPR005479; KEGG: cbt:CLH_1088 biotin carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Pyruvate carboxylase; SMART: Biotin carboxylase, C-terminal; SPTR: Acetyl-CoA carboxylase, biotin carboxylase subunit; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit YP_004339733.1 COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR001249; IPR000089; KEGG: nam:NAMH_0057 acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin/lipoyl attachment; SPTR: Acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_004339734.1 COGs: COG2200 FOG: EAL domain; InterProIPR000014; IPR000160; IPR001610; IPR001633; IPR 013767; IPR013656; KEGG: ddf:DEFDS_1856 hypothetical protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; PAS fold-4; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; SPTR: Putative uncharacterized protein; TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004339735.1 COGs: COG1415 conserved hypothetical protein; InterPro IPR008482; KEGG: tye:THEYE_A1547 hypothetical protein; PFAM: Protein of unknown function DUF763; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF763) YP_004339736.1 COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012846; IPR012001; IPR012000; IPR011766; KEGG: tye:THEYE_A1275 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Acetolactate synthase; SPTR: Acetolactate synthase; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type YP_004339737.1 COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR004789; IPR002912; IPR019455; KEGG: geo:Geob_1508 acetolactate synthase 3 regulatory subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT; SPTR: Acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit YP_004339738.1 COGs: COG0059 Ketol-acid reductoisomerase; HAMAP: Acetohydroxy acid isomeroreductase; InterPro IPR013023; IPR013116; IPR000506; KEGG: ddf:DEFDS_1665 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; PRIAM: Ketol-acid reductoisomerase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: Acetohydroxy acid isomeroreductase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase YP_004339739.1 COGs: COG0688 Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase-related protein; InterPro IPR004428; IPR003817; KEGG: pca:Pcar_1908 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase proenzyme; TIGRFAM: Phosphatidylserine decarboxylase-related protein; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein YP_004339740.1 COGs: COG1183 Phosphatidylserine synthase; InterPro IPR004533; IPR000462; KEGG: glo:Glov_2499 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase YP_004339741.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR005671; IPR013709; IPR000891; KEGG: ddf:DEFDS_1662 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; PRIAM: 2-isopropylmalate synthase; SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; SPTR: 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase, bacterial type; PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; TIGRFAM: 2-isopropylmalate synthase, bacterial type YP_004339742.1 KEGG: gur:Gura_2305 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339743.1 COGs: COG1624 conserved hypothetical protein; InterPro IPR003390; KEGG: ote:Oter_4591 hypothetical protein; PFAM: DNA integrity scanning protein, DisA, N-terminal; SPTR: Putative uncharacterized protein; PFAM: DisA bacterial checkpoint controller nucleotide-binding YP_004339744.1 COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR000672; IPR020630; IPR020631; KEGG: ddf:DEFDS_0005 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004339745.1 HAMAP: Ribosome maturation factor RimP; InterPro IPR003728; KEGG: cce:Ccel_0453 protein of unknown function DUF150; PFAM: Ribosome maturation factor RimP; SPTR: Ribosome maturation factor rimP; PFAM: Uncharacterised BCR, YhbC family COG0779 YP_004339746.1 COGs: COG0195 Transcription elongation factor; InterPro IPR010213; IPR022967; IPR013735; KEGG: dtu:Dtur_1206 NusA antitermination factor; PFAM: Transcription factor NusA, N-terminal; SMART: RNA-binding domain, S1; SPTR: NusA antitermination factor; TIGRFAM: Transcription termination factor NusA; PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA YP_004339747.1 COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR000178; IPR005225; IPR006847; IPR000795; IPR 004161; KEGG: gct:GC56T3_2290 translation initiation factor IF-2; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; SPTR: Translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2 YP_004339748.1 COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: toc:Toce_2131 protein of unknown function DUF503; PFAM: Protein of unknown function DUF503; SPTR: Hypothetical cytosolic protein; PFAM: Protein of unknown function (DUF503) YP_004339749.1 COGs: COG0858 Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; InterPro IPR000238; KEGG: ttm:Tthe_1408 ribosome-binding factor A; PFAM: Ribosome-binding factor A; SPTR: Ribosome-binding factor A; TIGRFAM: Ribosome-binding factor A; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_004339750.1 COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667; IPR003156; KEGG: gme:Gmet_1588 phosphoesterase, RecJ-like; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Phosphoesterase, RecJ-like; PFAM: DHH family; DHHA1 domain YP_004339751.1 COGs: COG0130 Pseudouridine synthase; HAMAP: tRNA pseudouridine synthase II, TruB; InterPro IPR014780; IPR002501; KEGG: clj:CLJU_c13180 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II; SPTR: tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase II, TruB; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_004339752.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: dsa:Desal_0902 transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR-like family; TIGRFAM: poly-beta-hydroxybutyrate-responsive repressor YP_004339753.1 COGs: COG2206 HD-GYP domain; InterPro IPR003607; IPR006674; KEGG: slp:Slip_2166 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Putative uncharacterized protein; PFAM: HD domain YP_004339754.1 COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: toc:Toce_1529 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1; SPTR: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC1 family YP_004339755.1 COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; InterPro IPR004507; IPR003382; KEGG: mfe:Mefer_0353 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Flavoprotein; SPTR: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases YP_004339756.1 COGs: COG1261 Flagellar basal body P-ring biosynthesis protein; InterPro IPR017585; IPR013974; KEGG: hor:Hore_16560 flagellar basal body P-ring biosynthesis protein; PFAM: SAF domain; SMART: SAF domain; SPTR: Flagella basal body P-ring formation protein; TIGRFAM: Flagella basal body P-ring formation protein FlgA; manually curated; PFAM: SAF domain; TIGRFAM: flagella basal body P-ring formation protein FlgA YP_004339757.1 COGs: COG4786 Flagellar basal body rod protein; InterPro IPR020013; IPR012834; IPR001444; IPR010930; KEGG: geo:Geob_0628 flagellar basal body rod protein FlgG; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; SPTR: Flagellar basal-body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgB; fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria YP_004339758.1 COGs: COG4786 Flagellar basal body rod protein; InterPro IPR020013; IPR001444; IPR010930; KEGG: hor:Hore_16580 flagellar basal body rod protein; PFAM: Flagellar basal body rod protein, N-terminal; Domain of unknown function DUF1078, C-terminal; SPTR: Flagellar basal-body rod protein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins YP_004339759.1 KEGG: ddf:DEFDS_1274 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339760.1 KEGG: ddf:DEFDS_1273 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339761.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593; IPR003439; KEGG: ddf:DEFDS_1272 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004339762.1 KEGG: nis:NIS_1389 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339763.1 COGs: COG2402 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: aae:aq_aa03 hypothetical protein; PFAM: PilT protein, N-terminal; SPTR: Uncharacterized protein aq_aa03; PFAM: PIN domain; TIGRFAM: probable toxin-antitoxin system toxin component, PIN family YP_004339764.1 InterPro IPR007016; KEGG: tle:Tlet_0774 O-antigen polymerase; PFAM: O-antigen ligase-related; SPTR: O-antigen polymerase; PFAM: O-Antigen ligase YP_004339765.1 KEGG: ddf:DEFDS_1271 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339766.1 COGs: COG4968 Tfp pilus assembly protein PilE; InterPro IPR012902; KEGG: ddf:DEFDS_1270 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004339767.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: hch:HCH_01122 outer membrane protein and related peptidoglycan-associated (LipO)protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Outer membrane protein and related peptidoglycan-associated (Lipo)protein; PFAM: OmpA family YP_004339768.1 KEGG: dba:Dbac_3244 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339769.1 COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: dap:Dacet_2435 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004339770.1 COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterPro IPR005892; IPR003593; IPR003439; IPR000644; KEGG: dap:Dacet_2436 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; PFAM: ABC transporter; CBS domain; TIGRFAM: glycine betaine/L-proline transport ATP binding subunit YP_004339771.1 COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: dap:Dacet_2437 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004339772.1 COGs: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); InterPro IPR007210; KEGG: dap:Dacet_2438 substrate-binding region of ABC-type glycine betaine transport system; PFAM: ABC-type glycine betaine transport system, substrate-binding domain; SPTR: Substrate-binding region of ABC-type glycine betaine transport system; PFAM: Substrate binding domain of ABC-type glycine betaine transport system YP_004339773.1 COGs: COG0655 Multimeric flavodoxin WrbA; KEGG: noc:Noc_1423 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: NADPH-dependent FMN reductase YP_004339774.1 COGs: COG2217 Cation transport ATPase; InterProIPR006403; IPR006416; IPR001757; IPR008250; IPR 005834; KEGG: mev:Metev_1829 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004339775.1 COGs: COG1937 conserved hypothetical protein; InterPro IPR003735; KEGG: tme:Tmel_0131 hypothetical protein; PFAM: Protein of unknown function DUF156; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised BCR, COG1937 YP_004339777.1 InterPro IPR018649; KEGG: pmo:Pmob_1110 hypothetical protein; PFAM: Protein of unknown function DUF2078, membrane; SPTR: Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2078) YP_004339778.1 COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004481; IPR004837; KEGG: ter:Tery_1252 CaCA family Na(+)/Ca(+) antiporter; PFAM: Sodium/calcium exchanger membrane region; SPTR: Na+/Ca+ antiporter, CaCA family; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein YP_004339779.1 COGs: COG0450 Peroxiredoxin; InterPro IPR000866; IPR019479; KEGG: sdl:Sdel_2257 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal; PRIAM: Peroxiredoxin; SPTR: Peroxiredoxin; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; TIGRFAM: peroxiredoxin YP_004339780.1 COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: ddf:DEFDS_1131 hypothetical protein; PFAM: LemA; SPTR: Putative uncharacterized protein; PFAM: LemA family YP_004339781.1 COGs: COG4907 membrane protein; InterPro IPR018702; KEGG: ddf:DEFDS_1130 hypothetical protein; PFAM: Protein of unknown function DUF2207, membrane; SPTR: Putative uncharacterized protein; manually curated; PFAM: Predicted membrane protein (DUF2207) YP_004339782.1 COGs: COG2105 conserved hypothetical protein; InterPro IPR009288; KEGG: dwi:Dwil_GK20731 GK20731 gene product from transcript GK20731-RA; PFAM: AIG2-like; SPTR: AIG2 family protein; PFAM: AIG2-like family YP_004339783.1 KEGG: tga:TGAM_1103 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339784.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000014; IPR000160; KEGG: aar:Acear_1996 diguanylate cyclase with PAS/PAC sensor; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase and metal dependent phosphohydrolase; TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: GGDEF domain; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004339785.1 COGs: COG5421 Transposase; InterPro IPR002559; KEGG: amc:MADE_02905 transposase, IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain YP_004339786.1 COGs: COG0426 flavoprotein; InterPro IPR001279; KEGG: hya:HY04AAS1_0391 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily YP_004339787.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: tye:THEYE_A0174 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: Methyl-accepting chemotaxis protein; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004339788.1 COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: tga:TGAM_0747 phosphoribosylaminoimidazole carboxylase, catalytic subunit (AIR carboxylase) (PurE); PFAM: Phosphoribosylaminoimidazole carboxylase, core; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, core; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein YP_004339789.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR010066; IPR003593; IPR003439; IPR013563; KEGG: shc:Shell_1120 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004339790.1 KEGG: cju:C8J_0978 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339791.1 COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; InterPro IPR004803; IPR002616; KEGG: thx:Thet_1445 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming YP_004339792.1 KEGG: sat:SYN_00536 putative cytoplasmic protein; SPTR: Putative uncharacterized protein YP_004339793.1 COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: tnp:Tnap_1788 protein of unknown function DUF477; PFAM: Protein of unknown function DUF477; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF477) YP_004339794.1 COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: bmd:BMD_3379 LemA family protein; PFAM: LemA; SPTR: LemA family protein; PFAM: LemA family YP_004339795.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765; IPR007863; KEGG: hms:HMU14040 putative zinc protease; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Putative zinc protease; manually curated; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_004339796.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR007863; KEGG: gbm:Gbem_0686 zinc-dependent peptidase lipoprotein M16 family protein; PFAM: Peptidase M16, C-terminal; SPTR: Zinc-dependent peptidase lipoprotein, M16 family; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_004339797.1 COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107; IPR002104; KEGG: toc:Toce_1271 tyrosine recombinase XerD subunit; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase XerD subunit; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004339798.1 COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; InterPro IPR001228; KEGG: sul:SYO3AOP1_0708 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004339799.1 COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR003526; KEGG: slp:Slip_2262 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_004339800.1 KEGG: brm:Bmur_2070 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2905) YP_004339801.1 COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: ddf:DEFDS_0093 preprotein translocase subunit YajC; PFAM: Preprotein translocase YajC; SPTR: Preprotein translocase subunit YajC; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit YP_004339802.1 COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR005791; IPR022645; IPR022646; IPR022813; KEGG: gbm:Gbem_2433 preprotein translocase subunit SecD; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal; SPTR: Protein export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family YP_004339803.1 COGs: COG0341 Preprotein translocase subunit SecF; InterPro IPR005665; IPR022645; IPR022646; IPR022813; KEGG: nis:NIS_1465 preprotein translocase subunit SecF; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal; SPTR: Preprotein translocase subunit F; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF YP_004339804.1 COGs: COG1391 Glutamine synthetase adenylyltransferase; InterPro IPR005190; IPR013546; KEGG: ddf:DEFDS_2134 glutamate-ammonia ligase adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase, repeated domain; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; PRIAM: [Glutamate--ammonia-ligase] adenylyltransferase; SPTR: Glutamate-ammonia ligase adenylyltransferase; PFAM: GlnD PII-uridylyltransferase; Glutamate-ammonia ligase adenylyltransferase YP_004339805.1 COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: fno:Fnod_0177 maf protein; PFAM: Maf-like protein; SPTR: Maf-like protein Fnod_0177; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; TIGRFAM: MAF protein YP_004339806.1 InterPro IPR000297; KEGG: ddf:DEFDS_1056 peptidyl-prolyl cis-trans isomerse D; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: Peptidyl-prolyl cis-trans isomerse D; PFAM: PPIC-type PPIASE domain YP_004339807.1 COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265; IPR003651; KEGG: pmx:PERMA_0607 probable endonuclease III (DNA-(apurinic orapyrimidinic site) lyase); PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: Endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III YP_004339808.1 KEGG: mgm:Mmc1_2258 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Chloroplast import component protein (Tic20) YP_004339809.1 COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: dak:DaAHT2_1047 protein of unknown function UPF0027; PFAM: Uncharacterised protein family UPF0027; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein family UPF0027 YP_004339810.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: ddf:DEFDS_1147 ADP-heptose:LPS heptosyltransferase II; PFAM: Glycosyl transferase, family 9; SPTR: ADP-heptose:LPS heptosyltransferase II; PFAM: Glycosyltransferase family 9 (heptosyltransferase) YP_004339811.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR011910; IPR002201; KEGG: ddf:DEFDS_1147 ADP-heptose:LPS heptosyltransferase II; PFAM: Glycosyl transferase, family 9; SPTR: ADP-heptose:LPS heptosyltransferase II; TIGRFAM: Lipopolysaccharide heptosyltransferase II; PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II YP_004339812.1 COGs: COG0555 ABC-type sulfate transport system permease component; InterPro IPR000515; KEGG: sdl:Sdel_2056 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004339813.1 COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR022498; KEGG: ddf:DEFDS_2180 sulfate/molybdate ABC transporter substrate-binding protein; SPTR: Sulfate/molybdate ABC transporter, substrate-binding protein; TIGRFAM: ABC transporter, tungstate-binding, WtpA; TIGRFAM: tungstate ABC transporter binding protein WtpA YP_004339814.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: ddf:DEFDS_1868 methyltransferase UbiE/COQ5 family; PFAM: Methyltransferase type 11; SPTR: Methyltransferase, UbiE/COQ5 family; PFAM: Methyltransferase domain YP_004339815.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: ton:TON_1353 cmo tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein; PFAM: Radical SAM; SPTR: Cmo tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein; PFAM: Radical SAM superfamily YP_004339816.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594; KEGG: pis:Pisl_1261 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: ThiF family protein; PFAM: ThiF family YP_004339817.1 InterPro IPR003749; KEGG: pmo:Pmob_0384 MoaD family protein; PFAM: ThiamineS; SPTR: MoaD family protein; PFAM: ThiS family; TIGRFAM: MoaD family protein, archaeal YP_004339818.1 COGs: COG2414 Aldehyde:ferredoxin oxidoreductase; InterPro IPR013983; IPR001203; KEGG: cpo:COPRO5265_0137 tungsten-containing aldehyde ferredoxin oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase, C-terminal; Aldehyde ferredoxin oxidoreductase, N-terminal; PRIAM: Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase, N-terminal; SPTR: Tungsten-containing aldehyde ferredoxin oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3 YP_004339819.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR020817; IPR001453; IPR005110; IPR005111; KEGG: ddf:DEFDS_1594 molybdopterin biosynthesis protein MoeA; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; MoeA, C-terminal, domain IV; SMART: Molybdopterin binding; SPTR: Molybdopterin biosynthesis protein MoeA; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_004339820.1 COGs: COG0225 Peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulphoxide reductase MsrA; InterPro IPR002569; KEGG: dap:Dacet_2517 methionine-R-sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Methionine-R-sulfoxide reductase; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase YP_004339821.1 COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: aae:aq_1145 1,3 propanediol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: Alcohol dehydrogenase; SPTR: 1,3 propanediol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase YP_004339822.1 KEGG: nmu:Nmul_A0029 hypothetical protein; SPTR: Transport-associated protein YP_004339823.1 KEGG: ant:Arnit_2186 type 12 methyltransferase; SPTR: Putative uncharacterized protein YP_004339824.1 COGs: COG0205 6-phosphofructokinase; HAMAP: Phosphofructokinase; InterPro IPR022953; IPR000023; KEGG: nis:NIS_0897 6-phosphofructokinase; PFAM: Phosphofructokinase domain; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; PFAM: Phosphofructokinase YP_004339825.1 COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR011894; IPR019752; KEGG: abi:Aboo_0298 pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; PRIAM: Pyruvate synthase; SPTR: 2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit, putative; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family YP_004339826.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880; KEGG: ton:TON_1478 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; PRIAM: Pyruvate synthase; SPTR: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; PFAM: domain YP_004339827.1 COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: abi:Aboo_0301 thiamine pyrophosphate protein domain protein TPP-binding protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate synthase; SPTR: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004339828.1 KEGG: ctc:CTC01910 DNA repair helicase rad25; SPTR: DNA repair helicase rad25 YP_004339829.1 COGs: COG1067 ATP-dependent protease; KEGG: tye:THEYE_A1753 ATP-dependent protease La; SPTR: ATP-dependent protease La; PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease YP_004339830.1 COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: slp:Slip_0398 chorismate synthase; PFAM: Chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: Chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase YP_004339831.1 COGs: COG0703 Shikimate kinase; HAMAP: Shikimate kinase; InterPro IPR000623; KEGG: cjr:CJE0436 shikimate kinase; PFAM: Shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; PFAM: Shikimate kinase YP_004339832.1 COGs: COG1639 signal transduction protein; InterPro IPR006675; IPR003607; IPR013976; KEGG: gem:GM21_3900 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG YP_004339833.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: scl:sce7198 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family YP_004339834.1 COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; InterPro IPR005251; IPR011559; IPR000649; KEGG: hya:HY04AAS1_0595 translation initiation factor, aIF-2BI family; PFAM: Initiation factor 2B-related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: Methylthioribose-1-phosphate isomerase; TIGRFAM: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase YP_004339835.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: chy:CHY_1601 3-hydroxybutyryl-CoA dehydratase; PFAM: Crotonase, core; SPTR: Putative enoyl-CoA hydratase/isomerase family protein; PFAM: Enoyl-CoA hydratase/isomerase family YP_004339836.1 COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390; IPR013822; IPR003593; IPR000897; KEGG: cow:Calow_0982 signal recognition particle-docking protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: Signal recognition particle, SRP54 subunit, GTPase; ATPase, AAA+ type, core; Signal recognition particle, SRP54 subunit, helical bundle; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_004339837.1 COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR000941; IPR020811; IPR020810; KEGG: ddf:DEFDS_0201 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: Enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase YP_004339838.1 InterPro IPR007060; KEGG: sul:SYO3AOP1_1041 septum formation initiator; PFAM: Septum formation initiator; SPTR: Septum formation initiator; PFAM: Septum formation initiator YP_004339839.1 COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; HAMAP: Folate-dependent ribothymidyl synthase; InterPro IPR004417; IPR002218; KEGG: tal:Thal_0079 gid protein; PFAM: Glucose-inhibited division protein A-related; PRIAM:Methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing); SPTR:Methylenetetrahydrofolate--tRNA-(uracil-5-)-me thyltransferasetrmFO; TIGRFAM: Folate-dependent ribothymidyl synthase; PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase YP_004339840.1 COGs: COG1351 alternative thymidylate synthase; HAMAP: Thymidylate synthase ThyX; InterPro IPR003669; KEGG: geo:Geob_0683 FAD-dependent thymidylate synthase; PFAM: Thymidylate synthase ThyX; SPTR: Thymidylate synthase thyX; TIGRFAM: Thymidylate synthase ThyX; PFAM: Thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent YP_004339841.1 COGs: COG0313 methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I; InterPro IPR008189; IPR000878; KEGG: geo:Geob_1497 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; TIGRFAM: Uncharacterised protein family UPF0011; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family YP_004339842.1 COGs: COG0728 membrane protein putative virulence factor; InterPro IPR004268; KEGG: sat:SYN_00104 virulence factor protein; PFAM: Flagellin assembly, membrane protein MviN; SPTR: Virulence factor protein; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN YP_004339843.1 COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: kcr:Kcr_0553 molybdopterin-guanine dinucleotide biosynthesis protein A; SPTR: Probable molybdopterin-guanine dinucleotide biosynthesis protein A YP_004339844.1 KEGG: abi:Aboo_0813 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1295) YP_004339845.1 COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR013216; KEGG: ddf:DEFDS_1417 ribosomal protein L11 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Ribosomal protein L11 methyltransferase; PFAM: Ribosomal protein L11 methyltransferase (PrmA) YP_004339846.1 COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; HAMAP: Phosphoribosylformylglycinamidine synthase II; InterPro IPR010074; IPR000728; IPR010918; KEGG: ddf:DEFDS_1604 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase 2; TIGRFAM: Phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II YP_004339847.1 InterPro IPR013096; KEGG: mar:MAE_21520 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: Putative uncharacterized protein; PFAM: Cupin domain YP_004339848.1 COGs: COG0322 Nuclease subunit of the excinuclease complex; HAMAP: Excinuclease ABC, C subunit; InterPro IPR004791; IPR000305; IPR001943; IPR001162; KEGG: nam:NAMH_0996 excinuclease ABC subunit C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: UvrABC system protein C; TIGRFAM: Excinuclease ABC, C subunit; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit YP_004339849.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tna:CTN_1435 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; PFAM: Receptor family ligand binding region YP_004339850.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: dap:Dacet_1931 biotin/lipoyl attachment domain-containing protein; PFAM: Biotin/lipoyl attachment; SPTR: Biotin/lipoyl attachment domain-containing protein; PFAM: Biotin-requiring enzyme YP_004339851.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR004549; IPR005482; IPR005481; IPR005479; KEGG: ddf:DEFDS_1227 propionyl-CoA carboxylase subunit alpha; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Pyruvate carboxylase; SMART: Biotin carboxylase, C-terminal; SPTR: Propionyl-CoA carboxylase, alpha subunit; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit YP_004339852.1 COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: ddf:DEFDS_1228 propionyl-CoA carboxylase subunit beta; PFAM: Carboxyl transferase; PRIAM: Propionyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase, beta subunit; PFAM: Carboxyl transferase domain YP_004339853.1 COGs: COG1109 Phosphomannomutase; InterPro IPR005844; IPR005845; IPR005846; IPR005843; KEGG: tye:THEYE_A0095 phosphomannomutase/phosphoglucomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; SPTR: Phosphomannomutase/phosphoglucomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_004339854.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR022432; IPR020050; IPR006638; IPR007197; KEGG: chy:CHY_1806 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; TIGRFAM: Menaquinone biosynthesis, SCO4494, predicted; FO synthase, subunit 2; PFAM: Radical SAM superfamily; TIGRFAM: putative menaquinone biosynthesis protein, SCO4494 family; radical SAM domain protein, CofH subfamily YP_004339855.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR022431; IPR020050; IPR006638; IPR007197; KEGG: aae:aq_789 hypothetical protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; TIGRFAM: Menaquinone biosynthesis, SCO4550; FO synthase, subunit 2; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily; menaquinone biosynthesis protein, SCO4550 family YP_004339856.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; IPR011109; KEGG: pla:Plav_0320 resolvase domain-containing protein; PFAM: Recombinase; Resolvase, N-terminal; SMART: Resolvase, N-terminal; SPTR: Resolvase domain; PFAM: Recombinase; Resolvase, N terminal domain YP_004339857.1 InterPro IPR001387; KEGG: cpb:Cphamn1_0190 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; PFAM: Helix-turn-helix YP_004339858.1 COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: hsm:HSM_1880 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific; SPTR: Putative type I restriction-modification system, M subunit; PFAM: N-6 DNA Methylase YP_004339859.1 KEGG: mja:MJ_1218 type I restriction-modification enzyme 1 subunit S; SPTR: Uncharacterized protein MJ1218; PFAM: Type I restriction modification DNA specificity domain YP_004339860.1 KEGG: lpa:lpa_00282 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339861.1 COGs: COG2354 conserved hypothetical protein; InterPro IPR008526; KEGG: sua:Saut_1389 hypothetical protein; PFAM: Protein of unknown function DUF808; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF808) YP_004339862.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR001450; KEGG: pmo:Pmob_0382 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S binding domain; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain YP_004339863.1 COGs: COG2414 Aldehyde:ferredoxin oxidoreductase; InterPro IPR013983; IPR001203; KEGG: pmo:Pmob_0381 aldehyde ferredoxin oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase, C-terminal; Aldehyde ferredoxin oxidoreductase, N-terminal; PRIAM: Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase, N-terminal; SPTR: Aldehyde ferredoxin oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3 YP_004339864.1 COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027; KEGG: pmo:Pmob_0380 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004339865.1 COGs: COG1280 Putative threonine efflux protein; InterPro IPR001123; KEGG: nam:NAMH_1029 L-lysine/homoserine-homoserine lactone exporter family; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Putative uncharacterized protein; PFAM: LysE type translocator YP_004339866.1 COGs: COG2607 ATPase (AAA+ superfamily); InterPro IPR003593; IPR003959; IPR008533; KEGG: ddf:DEFDS_0813 hypothetical protein; PFAM: Domain of unknown function DUF815; ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF815) YP_004339867.1 InterPro IPR003741; KEGG: pmz:HMPREF0659_A5779 hypothetical protein; PFAM: Domain of unknown function DUF162; SPTR: YkgG family protein; PFAM: Uncharacterised ACR, YkgG family COG1556 YP_004339868.1 COGs: COG0588 Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; InterPro IPR005952; IPR013078; KEGG: wch:wcw_0297 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; PRIAM: Phosphoglycerate mutase; SMART: Histidine phosphatase superfamily, clade-1; SPTR: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase 1; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1 YP_004339869.1 COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; InterPro IPR000644; IPR010766; KEGG: rxy:Rxyl_0826 putative manganese-dependent inorganic pyrophosphatase; PFAM: Cystathionine beta-synthase, core; DRTGG; SMART: Cystathionine beta-synthase, core; SPTR: CBS domain pair protein; PFAM: DRTGG domain; DHH family; CBS domain YP_004339870.1 COGs: COG3808 Inorganic pyrophosphatase; HAMAP: Pyrophosphate-energised proton pump; InterPro IPR004131; KEGG: gbm:Gbem_0566 membrane-bound proton-translocating pyrophosphatase; PFAM: Pyrophosphate-energised proton pump; PRIAM: Inorganic diphosphatase; SPTR: V-type proton-translocating pyrophosphatase; TIGRFAM: Pyrophosphate-energised proton pump; PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase YP_004339871.1 COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: SAICAR synthetase; InterPro IPR001636; KEGG: aco:Amico_1162 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: SAICAR synthetase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004339872.1 COGs: COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase PurS component; InterPro IPR003850; KEGG: bay:RBAM_006880 phosphoribosylformylglycinamidine synthase subunit PurS; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; SPTR: PurS; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein YP_004339873.1 COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; HAMAP: Phosphoribosylformylglycinamidine synthase I; InterPro IPR010075; IPR011698; KEGG: drm:Dred_2367 phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ-like glutamine amidotransferase; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase I; TIGRFAM: Phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: phosphoribosylformylglycinamidine synthase I YP_004339874.1 COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; HAMAP: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; InterPro IPR004639; IPR005814; KEGG: pmx:PERMA_1058 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Glutamate-1-semialdehyde 2,1-aminomutase; SPTR: Glutamate-1-semialdehyde aminotransferase; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase YP_004339875.1 KEGG: dap:Dacet_0463 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Putative F0F1-ATPase subunit (ATPase_gene1); TIGRFAM: F0F1-ATPase subunit, putative YP_004339876.1 KEGG: gme:Gmet_3358 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339877.1 COGs: COG0356 F0F1-type ATP synthase subunit a; HAMAP: ATPase, F0 complex, subunit A; InterPro IPR000568; KEGG: sfu:Sfum_1605 ATP synthase F0, A subunit; PFAM: ATPase, F0 complex, subunit A; SPTR: ATP synthase subunit a; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_004339878.1 HAMAP: ATPase, F0 complex, subunit C; InterPro IPR005953; IPR000454; IPR002379; KEGG: tye:THEYE_A1529 ATP synthase C chain; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: ATP synthase subunit c; TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c YP_004339879.1 COGs: COG0550 Topoisomerase IA; InterProIPR005733; IPR006171; IPR003601; IPR003602; IPR 013497; IPR013498; KEGG: sun:SUN_0088 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial; DNA topoisomerase I, archaeal YP_004339880.1 COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: pmx:PERMA_0241 protein smf (DNA-processing chain A); PFAM: DNA recombination-mediator protein A; SPTR: Topoisomerase; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA YP_004339881.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: nis:NIS_0132 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Putative uncharacterized protein; PFAM: Methyltransferase domain YP_004339882.1 COGs: COG0370 Fe2+ transport system protein B; InterProIPR005225; IPR003373; IPR002917; IPR011619; IPR 011642; IPR011640; KEGG: ipo:Ilyop_0309 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; SPTR: Ferrous iron transporter B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain YP_004339883.1 COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167; KEGG: cli:Clim_0753 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit; SPTR: FeoA family protein; PFAM: FeoA domain YP_004339884.1 COGs: COG4378 conserved hypothetical protein; KEGG: cco:CCC13826_1931 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2325) YP_004339885.1 InterPro IPR007167; KEGG: pab:PAB3260 hypothetical protein; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit; SPTR: FeoA; PFAM: FeoA domain YP_004339886.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: sfu:Sfum_1309 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; PRIAM: Lactaldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase (NAD(+)); PFAM: Aldehyde dehydrogenase family YP_004339887.1 COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: nam:NAMH_0925 DapE downstream ORF 2; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; SPTR: DapE downstream ORF 2; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2 YP_004339888.1 KEGG: paa:Paes_1915 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: CARDB YP_004339889.1 COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006268; IPR006218; KEGG: ddf:DEFDS_0830 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: 3-deoxy-7-phosphoheptulonate synthase; TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; phospho-2-dehydro-3-deoxyheptonate aldolase YP_004339890.1 COGs: COG0460 Homoserine dehydrogenase; InterPro IPR005106; IPR001342; IPR002912; KEGG: tye:THEYE_A1986 homoserine dehydrogenase (HDH): ThrA, MetL; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; PRIAM: Homoserine dehydrogenase; SPTR: Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, NAD binding domain; Homoserine dehydrogenase; ACT domain YP_004339891.1 COGs: COG0165 Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; InterPro IPR009049; IPR022761; IPR000086; KEGG: pmx:PERMA_0095 argininosuccinate lyase; PFAM: Lyase 1, N-terminal; NUDIX hydrolase domain; PRIAM: Argininosuccinate lyase., ADP-ribose diphosphatase; SPTR: Argininosuccinate lyase; TIGRFAM: Argininosuccinate lyase; PFAM: Lyase; NUDIX domain; TIGRFAM: argininosuccinate lyase YP_004339892.1 COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR004610; IPR001667; IPR003156; KEGG: sat:SYN_02529 single-stranded DNA-specific exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: DHHA1 domain; DHH family; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_004339893.1 InterPro IPR013344; IPR013509; IPR000788; KEGG: tye:THEYE_A0131 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_004339894.1 COGs: COG0162 Tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase, class Ib; InterPro IPR002307; IPR002942; IPR002305; KEGG: ddf:DEFDS_0113 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; SMART: RNA-binding S4; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_004339895.1 COGs: COG1521 Putative transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: tjr:TherJR_0225 transcriptional activator, Baf family; PFAM: Type III pantothenate kinase; SPTR: Type III pantothenate kinase; TIGRFAM: Type III pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III YP_004339896.1 COGs: COG0240 Glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; InterPro IPR006168; IPR011128; IPR006109; KEGG: ddf:DEFDS_1969 glycerol-3-phosphate dehydrogenase (NAD(P)+); PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_004339897.1 COGs: COG1580 Flagellar basal body-associated protein; InterPro IPR005503; KEGG: ddf:DEFDS_1717 flagellar FliL protein; PFAM: Flagellar basal body-associated protein FliL; SPTR: Flagellar FliL protein; PFAM: Flagellar basal body-associated protein FliL YP_004339898.1 COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR001543; KEGG: dap:Dacet_0293 surface presentation of antigens (SpoA) protein; PFAM: Surface presentation of antigen (SpoA); SPTR: CheC, inhibitor of MCP methylation / FliN fusion protein; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN YP_004339899.1 KEGG: vfm:VFMJ11_1975 flagellar protein FliO; SPTR: Flagellar biosynthesis protein FliO; PFAM: Flagellar biosynthesis protein, FliO; TIGRFAM: flagellar biosynthetic protein FliO YP_004339900.1 COGs: COG1338 Flagellar biosynthesis pathway component FliP; InterPro IPR005837; IPR005838; KEGG: drm:Dred_2396 flagellar biosynthesis protein FliP; PFAM: Type III secretion system inner membrane P protein; SPTR: Flagellar biosynthetic protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP YP_004339901.1 COGs: COG1987 Flagellar biosynthesis pathway component FliQ; InterPro IPR006305; IPR002191; KEGG: cju:C8J_1576 flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3; SPTR: Flagellar biosynthetic protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ YP_004339902.1 COGs: COG1684 Flagellar biosynthesis pathway component FliR; InterPro IPR002010; KEGG: ddf:DEFDS_0412 flagellar biosynthetic protein FliR; PFAM: Type III secretion system inner membrane R protein; SPTR: Flagellar biosynthetic protein fliR; PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR YP_004339903.1 COGs: COG1377 Flagellar biosynthesis pathway component FlhB; InterPro IPR006136; IPR006135; KEGG: ddf:DEFDS_0413 flagellar biosynthetic protein FlhB; PFAM: Type III secretion exporter; SPTR: Flagellar biosynthetic protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flagellar biosynthetic protein FlhB; flhB C-terminus-related protein YP_004339904.1 COGs: COG1345 Flagellar capping protein; InterPro IPR003481; IPR010809; KEGG: neu:NE1595 flagellar hook-associated protein 2; PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; SPTR: Flagellar hook-associated protein 2; PFAM: Flagellar hook-associated protein 2 C-terminus YP_004339905.1 COGs: COG1334 Uncharacterized flagellar protein FlaG; InterPro IPR005186; KEGG: cff:CFF8240_0093 flagellar protein FlaG; PFAM: Flagellar protein FlaG protein; SPTR: Flagellar protein FlaG; PFAM: FlaG protein YP_004339906.1 COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: cbf:CLI_2784 flagellar protein FliS; PFAM: Flagellar protein FliS; SPTR: Flagellar protein FliS; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS YP_004339907.1 KEGG: ddi:DDB_G0268288 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339908.1 KEGG: ppa:PAS_chr2-2_0213 Histone acetyltransferase catalytic subunit of NuA3 complex that acetylates histone H3, involved in; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF2018) YP_004339909.1 COGs: COG0717 Deoxycytidine deaminase; HAMAP: Deoxycytidine triphosphate deaminase; InterPro IPR011962; KEGG: tye:THEYE_A1937 deoxycytidine triphosphate deaminase; PRIAM: dCTP deaminase; SPTR: Deoxycytidine triphosphate deaminase; TIGRFAM: Deoxycytidine triphosphate deaminase; PFAM: dUTPase; TIGRFAM: deoxycytidine triphosphate deaminase YP_004339910.1 COGs: COG0217 conserved hypothetical protein; HAMAP: Protein of unknown function DUF28; InterPro IPR002876; KEGG: gur:Gura_1416 hypothetical protein; PFAM: Protein of unknown function DUF28; SPTR: UPF0082 protein Gmet_0743; TIGRFAM: Protein of unknown function DUF28; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family YP_004339911.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: aar:Acear_2161 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1 YP_004339912.1 COGs: COG0648 Endonuclease IV; HAMAP: Endodeoxyribonuclease IV; InterPro IPR001719; IPR012307; KEGG: nam:NAMH_0905 apurinic/apyrimidinic endonuclease; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: Deoxyribonuclease IV (phage-T(4)-induced); SMART: Endodeoxyribonuclease IV; SPTR: Probable endonuclease 4; TIGRFAM: Endodeoxyribonuclease IV; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1) YP_004339913.1 COGs: COG5002 Signal transduction histidine kinase; InterPro IPR000014; IPR003661; IPR003594; KEGG: dap:Dacet_1228 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004339914.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; IPR001867; KEGG: dap:Dacet_1229 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004339915.1 COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170; KEGG: ddf:DEFDS_0404 phosphate transport system regulator; PFAM: PhoU; SPTR: Phosphate transport system regulator; TIGRFAM: PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU YP_004339916.1 COGs: COG1117 ABC-type phosphate transport system ATPase component; InterPro IPR005670; IPR003593; IPR003439; KEGG: ddf:DEFDS_0402 phosphate ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Phosphate ABC transporter, ATP-binding protein; TIGRFAM: Phosphate transport system permease protein 1; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein YP_004339917.1 COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR005672; IPR000515; KEGG: ddf:DEFDS_0401 phosphate ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Phosphate ABC transporter, permease; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA YP_004339918.1 COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR011864; IPR000515; KEGG: pmx:PERMA_1573 phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Phosphate ABC transporter, permease protein PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC YP_004339919.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR005673; IPR006059; KEGG: aae:aq_2016 phosphate-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Phosphate-binding periplasmic protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate ABC transporter, phosphate-binding protein YP_004339920.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006656; KEGG: ddf:DEFDS_1943 hypothetical protein; PFAM: Molybdopterin oxidoreductase; SPTR: Putative uncharacterized protein; PFAM: Molybdopterin oxidoreductase YP_004339921.1 KEGG: bcq:BCQ_1018 DNA topoisomerase VI, subunit A; SPTR: DNA topoisomerase VI, subunit A; PFAM: Uncharacterized protein conserved in bacteria C-term(DUF2220) YP_004339922.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: hth:HTH_0673 glycosyltransferase, family 39; PFAM: Glycosyl transferase, family 39; SPTR: 3-dehydroquinate synthase YP_004339923.1 COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: tye:THEYE_A0610 isochorismatase family protein; PFAM: Isochorismatase-like; SPTR: Isochorismatase family protein; PFAM: Isochorismatase family YP_004339924.1 KEGG: pfh:PFHG_01537 hypothetical protein similar to erythrocyte binding protein; SPTR: Chimeric erythrocyte-binding protein MAEBL YP_004339925.1 COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: ddf:DEFDS_1930 phosphatase Ppx/GppA family; PFAM: Ppx/GppA phosphatase; SPTR: Phosphatase, Ppx/GppA family; PFAM: Ppx/GppA phosphatase family YP_004339926.1 COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: abo:ABO_2305 phosphate transporter, putative; PFAM: Phosphate transporter; SPTR: Phosphate transporter; PFAM: Phosphate transporter family YP_004339927.1 COGs: COG1392 Phosphate transport regulator (distant homolog of PhoU); InterPro IPR002727; IPR018445; KEGG: pcu:pc0098 hypothetical protein; PFAM: Putitive phosphate transport regulator; SPTR: Putative uncharacterized protein; TIGRFAM: Protein of unknown function DUF47; PFAM: Protein of unknown function DUF47; TIGRFAM: conserved hypothetical protein TIGR00153 YP_004339928.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR019591; KEGG: nde:NIDE2481 protein Mrp, putative ATPase (fragment); PFAM: ATPase-like, ParA/MinD; SPTR: ATP/GTP-binding protein; PFAM: ParA/MinD ATPase like; ATPase MipZ YP_004339929.1 COGs: COG0499 S-adenosylhomocysteine hydrolase; HAMAP: Adenosylhomocysteinase; InterPro IPR000043; IPR015878; KEGG: pmx:PERMA_0556 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; Adenosylhomocysteinase; PRIAM: Adenosylhomocysteinase; SPTR: Adenosylhomocysteinase; TIGRFAM: Adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase YP_004339930.1 COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; InterPro IPR002133; IPR022628; IPR022629; IPR022630; KEGG: ddf:DEFDS_1515 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase YP_004339931.1 COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR004559; IPR006638; IPR007197; IPR010723; KEGG: dth:DICTH_0981 putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase YP_004339932.1 KEGG: drt:Dret_0692 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated YP_004339933.1 COGs: COG1833 conserved hypothetical protein; InterPro IPR000305; IPR002837; KEGG: mfv:Mfer_0381 hypothetical protein; PFAM: Protein of unknown function DUF123; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: Conserved domain protein, putative; PFAM: Domain of unknown function DUF123 YP_004339934.1 COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: taf:THA_69 integral membrane protein; PFAM: Domain of unknown function DUF125, transmembrane; SPTR: Integral membrane protein; PFAM: VIT family YP_004339935.1 COGs: COG3681 conserved hypothetical protein; KEGG: nam:NAMH_0191 hypothetical protein; SPTR: UPF0597 protein NAMH_0191; PFAM: Serine dehydratase alpha chain YP_004339936.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660; IPR004089; IPR013163; KEGG: tma:TM1428 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Cache, type 2; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: Methyl-accepting chemotaxis protein 4; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004339937.1 KEGG: sun:SUN_1356 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339938.1 COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: lpa:lpa_02984 ABC transport system periplasmic substrate binding protein; PFAM: Mammalian cell entry-related; SPTR: Putative uncharacterized protein; PFAM: mce related protein YP_004339939.1 COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003593; IPR003439; KEGG: oca:OCAR_5352 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004339940.1 COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: abu:Abu_0108 ABC transporter, permease protein; PFAM: Domain of unknown function DUF140; SPTR: ABC transporter, permease protein; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein YP_004339941.1 InterPro IPR000620; KEGG: cbf:CLI_1248 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: Putative membrane protein; PFAM: EamA-like transporter family YP_004339942.1 COGs: COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid; InterPro IPR004942; KEGG: aae:aq_1847 hypothetical protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related; SPTR: Putative uncharacterized protein; PFAM: Roadblock/LC7 domain YP_004339943.1 KEGG: tin:Tint_1170 methyl-accepting chemotaxis sensory transducer; SPTR: Putative bacterial chemotaxis sensory transducer YP_004339944.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sul:SYO3AOP1_1122 transposase mutator type; PFAM: Transposase, mutator type; SPTR: Transposase mutator type; PFAM: Transposase, Mutator family YP_004339945.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: dae:Dtox_3953 diguanylate cyclase and metal dependent phosphohydrolase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase and metal dependent phosphohydrolase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004339946.1 KEGG: hya:HY04AAS1_1031 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339947.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR013216; IPR011095; KEGG: tnp:Tnap_0342 methyltransferase type 11; PFAM: Methyltransferase type 11; D-alanine--D-alanine ligase, C-terminal; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_004339948.1 InterPro IPR007577; KEGG: pdi:BDI_1286 glycosyl transferase family protein; PFAM: Glycosyltransferase, DXD sugar-binding region; SPTR: Putative uncharacterized protein; PFAM: Glycosyltransferase sugar-binding region containing DXD motif YP_004339949.1 COGs: COG3894 Uncharacterized metal-binding protein; InterPro IPR001041; KEGG: ccb:Clocel_1250 ferredoxin; PFAM: Ferredoxin; SPTR: Putative uncharacterized protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain YP_004339950.1 InterPro IPR004316; KEGG: cph:Cpha266_2465 MtN3 and saliva related transmembrane protein; PFAM: RAG1-activating protein-1-related; SPTR: Putative uncharacterized protein; PFAM: PQ loop repeat YP_004339951.1 COGs: COG0708 Exonuclease III; InterPro IPR000097; IPR004808; IPR005135; KEGG: gvi:glr0140 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Exodeoxyribonuclease III; SPTR: Exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth) YP_004339952.1 COGs: COG0752 Glycyl-tRNA synthetase alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; InterPro IPR002310; KEGG: nam:NAMH_1457 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit YP_004339953.1 COGs: COG0751 Glycyl-tRNA synthetase beta subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, beta subunit; InterPro IPR015944; IPR002311; IPR008909; KEGG: ddf:DEFDS_0236 glycyl-tRNA synthetase subunit beta; PFAM: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal; DALR anticodon binding; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase beta subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; PFAM: Glycyl-tRNA synthetase beta subunit; DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit YP_004339954.1 COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR000644; IPR005990; IPR001093; KEGG: dth:DICTH_0584 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SMART: Cystathionine beta-synthase, core; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_004339955.1 COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: hya:HY04AAS1_1188 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; SPTR: Phospholipase D/Transphosphatidylase YP_004339956.1 KEGG: chy:CHY_0746 thiamine-phosphate pyrophosphorylase; SPTR: Thiamine-phosphate pyrophosphorylase YP_004339957.1 COGs: COG0481 Membrane GTPase LepA; HAMAP: GTP-binding protein LepA; InterProIPR000640; IPR005225; IPR006297; IPR000795; IPR 004161; IPR013842; KEGG: ddf:DEFDS_0116 GTP-binding protein LepA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein LepA, C-terminal; SMART: Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain YP_004339958.1 COGs: COG0681 Signal peptidase I; InterPro IPR000223; IPR019759; KEGG: dma:DMR_39450 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_004339959.1 COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: dak:DaAHT2_0799 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_004339960.1 KEGG: rcp:RCAP_rcc01560 hypothetical protein; SPTR: Membrane protein, putative; PFAM: Protein of unknown function (DUF2892) YP_004339961.1 COGs: COG0227 Ribosomal protein L28; HAMAP: Ribosomal protein L28; InterPro IPR001383; KEGG: aac:Aaci_1329 ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_004339962.1 COGs: COG4739 Uncharacterized protein containing a ferredoxin domain; InterPro IPR019224; KEGG: tjr:TherJR_1864 protein of unknown function DUF2148; PFAM: Protein of unknown function DUF2148; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein containing a ferredoxin domain (DUF2148) YP_004339963.1 COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR014284; IPR012845; IPR007627; IPR007624; IPR 007630; KEGG: cwo:Cwoe_3664 RNA polymerase, sigma 28 subunit, FliA/WhiG; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family YP_004339964.1 KEGG: mmu:100040010 predicted gene 2554; SPTR: LRRGT00184 YP_004339965.1 COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); HAMAP: NAD-dependent DNA ligase; InterProIPR013840; IPR003583; IPR001357; IPR001679; IPR 013839; IPR004150; IPR004149; IPR000445; KEGG: tye:THEYE_A2000 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; Helix-hairpin-helix motif; BRCT; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; SPTR: DNA ligase; TIGRFAM: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase C4 zinc finger domain; BRCA1 C Terminus (BRCT) domain; Helix-hairpin-helix motif; TIGRFAM: DNA ligase, NAD-dependent YP_004339966.1 COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: gur:Gura_0635 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004339967.1 COGs: COG0705 membrane protein; InterPro IPR022764; KEGG: tna:CTN_1482 rhomboid family protein; PFAM: Peptidase S54, rhomboid domain; SPTR: Rhomboid family protein; PFAM: Rhomboid family YP_004339968.1 COGs: COG3216 conserved hypothetical protein; InterPro IPR018639; KEGG: glo:Glov_0526 hypothetical protein; PFAM: Protein of unknown function DUF2062; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2062) YP_004339969.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; IPR019734; IPR001440; KEGG: ddf:DEFDS_1649 hypothetical protein; PFAM: Heat shock protein DnaJ, N-terminal; Tetratricopeptide TPR-1; SMART: Heat shock protein DnaJ, N-terminal; Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; PFAM: DnaJ domain; Tetratricopeptide repeat YP_004339970.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR014284; IPR009042; IPR007627; IPR007630; KEGG: ddf:DEFDS_1924 DNA-directed RNA polymerase sigma 70 factor; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004339971.1 COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015273; IPR015803; KEGG: tye:THEYE_A1975 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase YP_004339972.1 InterPro IPR002482; IPR018392; KEGG: dno:DNO_0155 LysM domain-containing protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: LysM domain protein; PFAM: LysM domain YP_004339973.1 KEGG: hth:HTH_1797 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339974.1 KEGG: cff:CFF8240_1548 putative periplasmic protein; SPTR: Putative periplasmic protein YP_004339975.1 KEGG: geo:Geob_2313 AsmA family protein; SPTR: AsmA family protein YP_004339976.1 COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR003726; IPR000489; IPR003759; IPR006158; KEGG: gsu:GSU2921 5-methyltetrahydrofolate-homocysteine methyltransferase, truncation; PFAM: Homocysteine S-methyltransferase; Pterin-binding; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; PRIAM: Methionine synthase; SPTR: 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: Pterin binding enzyme; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase YP_004339977.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; IPR003593; IPR002078; KEGG: ddf:DEFDS_0834 two-component, sigma54 specific, transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Two-component, sigma54 specific, transcriptional regulator; PFAM: Response regulator receiver domain; Sigma-54 interaction domain YP_004339978.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: mes:Meso_1471 peptidylprolyl isomerase, FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004339979.1 KEGG: tye:THEYE_A1270 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339980.1 COGs: COG0058 Glucan phosphorylase; InterPro IPR011834; IPR000811; KEGG: nis:NIS_0944 glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35; PRIAM: Phosphorylase; SPTR: Glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: Alpha-glucan phosphorylase; PFAM: Starch synthase catalytic domain; Carbohydrate phosphorylase; TIGRFAM: alpha-glucan phosphorylases YP_004339981.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; HAMAP: 1,4-alpha-glucan-branching enzyme; InterProIPR006589; IPR006407; IPR004193; IPR006047; IPR 006048; KEGG: sun:SUN_1268 1,4-alpha-glucan branching enzyme; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; Alpha-amylase, C-terminal all beta; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: 1,4-alpha-glucan-branching enzyme; TIGRFAM: 1,4-alpha-glucan-branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase YP_004339982.1 COGs: COG0297 Glycogen synthase; HAMAP: Glycogen/starch synthases, ADP-glucose type; InterPro IPR011835; IPR013534; IPR001296; KEGG: sun:SUN_1269 glycogen synthase; PFAM: Starch synthase, catalytic domain; Glycosyl transferase, group 1; PRIAM: Starch synthase; SPTR: Glycogen synthase 1; TIGRFAM: Glycogen/starch synthases, ADP-glucose type; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type YP_004339983.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sun:SUN_1270 hypothetical protein; PFAM: ROK; SPTR: Putative uncharacterized protein; PFAM: ROK family YP_004339984.1 COGs: COG0297 Glycogen synthase; HAMAP: Glycogen/starch synthases, ADP-glucose type; InterPro IPR011835; IPR013534; IPR001296; KEGG: sun:SUN_1271 glycogen synthase; PFAM: Starch synthase, catalytic domain; Glycosyl transferase, group 1; PRIAM: Starch synthase; SPTR: Glycogen synthase 2; TIGRFAM: Glycogen/starch synthases, ADP-glucose type; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type YP_004339985.1 COGs: COG1085 Galactose-1-phosphate uridylyltransferase; InterPro IPR001937; KEGG: nis:NIS_0939 galactose-1-phosphate uridylyltransferase; PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase; SPTR: Galactose-1-phosphate uridylyltransferase; TIGRFAM: Galactose-1-phosphate uridyl transferase, class I; PFAM: Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 1 YP_004339986.1 COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300; IPR015178; IPR015179; KEGG: sun:SUN_1273 4-alpha-glucanotransferase; PFAM: Glycoside hydrolase, family 57, N-terminal; Alpha-amylase/4-alpha-glucanotransferase, central domain; Alpha-amylase/4-alpha-glucanotransferase, C-terminal; PRIAM: 4-alpha-glucanotransferase; SPTR: 4-alpha-glucanotransferase; PFAM: Domain of unknown function (DUF1925); Glycosyl hydrolase family 57; Domain of unknown function (DUF1926) YP_004339987.1 COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300; KEGG: sun:SUN_1274 glycoside hydrolase; PFAM: Glycoside hydrolase, family 57, N-terminal; SPTR: Glycoside hydrolase; PFAM: Glycosyl hydrolase family 57 YP_004339988.1 COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR005835; IPR001451; IPR005844; IPR005845; KEGG: sun:SUN_1275 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; PRIAM: Mannose-1-phosphate guanylyltransferase., Phosphoglucosamine mutase; SPTR: Mannose-1-phosphate guanylyltransferase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Nucleotidyl transferase; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_004339989.1 KEGG: lbc:LACBIDRAFT_322361 hypothetical protein; SPTR: Transporter, solute:sodium symporter (SSS) family protein YP_004339990.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sul:SYO3AOP1_1122 transposase mutator type; PFAM: Transposase, mutator type; SPTR: Transposase mutator type; PFAM: Transposase, Mutator family YP_004339991.1 COGs: COG1484 DNA replication protein; InterPro IPR003593; IPR002611; KEGG: csc:Csac_2606 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: IstB domain protein ATP-binding protein; PFAM: IstB-like ATP binding protein YP_004339992.1 KEGG: bha:BH0827 fructose 1-phosphate kinase; SPTR: Predicted protein YP_004339993.1 HAMAP: Twin-arginine translocation protein TatA/E; InterPro IPR006312; IPR003369; KEGG: dat:HRM2_06850 twin arginine translocase protein A; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; SPTR: Sec-independent protein translocase protein tatA/E homolog; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_004339994.1 COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR008909; IPR001278; IPR005148; IPR015945; KEGG: ddf:DEFDS_1359 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; DALR anticodon binding; PRIAM: Arginine--tRNA ligase; SMART: DALR anticodon binding; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase YP_004339995.1 InterPro IPR007730; KEGG: ddi:DDB_G0280513 hypothetical protein; PFAM: Sporulation-related domain; SPTR: Putative uncharacterized protein; PFAM: Sporulation related domain YP_004339996.1 COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: tye:THEYE_A0186 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_004339997.1 KEGG: hhe:HH0986 hypothetical protein; SPTR: Putative uncharacterized protein YP_004339998.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; InterPro IPR005758; IPR000713; IPR013221; IPR004101; KEGG: aae:aq_1360 UDP-N-acetylmuramate-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase YP_004339999.1 COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterPro IPR003170; IPR006094; IPR011601; KEGG: tjr:TherJR_2158 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_004340000.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; HAMAP: D-alanine--D-alanine ligase; InterPro IPR005905; IPR011127; IPR011095; KEGG: pmx:PERMA_0620 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B); PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_004340001.1 COGs: COG1589 Cell division septal protein; InterPro IPR013685; KEGG: tpd:Teth39_0815 polypeptide-transport-associated domain-containing protein; PFAM: Polypeptide-transport-associated, FtsQ-type; SPTR: Putative uncharacterized protein; PFAM: POTRA domain, FtsQ-type YP_004340002.1 COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR003494; IPR020823; KEGG: gur:Gura_3969 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SMART: Cell division protein FtsA domain; SPTR: Cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA YP_004340003.1 COGs: COG0206 Cell division GTPase; InterPro IPR003008; IPR018316; IPR000158; KEGG: bcy:Bcer98_2555 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ YP_004340004.1 COGs: COG0344 membrane protein; HAMAP: Glycerol-3-phosphate acyltransferase, bacteria; InterPro IPR003811; KEGG: pmo:Pmob_1616 hypothetical protein; PFAM: Glycerol-3-phosphate acyltransferase, bacteria; SPTR: Glycerol-3-phosphate acyltransferase 2; TIGRFAM: Glycerol-3-phosphate acyltransferase, bacteria; PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase YP_004340005.1 InterPro IPR007463; KEGG: wsu:WS2051 hypothetical protein; PFAM: Protein of unknown function DUF507; SPTR: Competence/damage-inducible domain protein; PFAM: Protein of unknown function (DUF507) YP_004340006.1 KEGG: gem:GM21_0231 protein of unknown function DUF507; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF507) YP_004340007.1 COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR006274; IPR002474; IPR000991; KEGG: hth:HTH_1256 carbamoyl-phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: Carbamoyl-phosphate synthase small subunit; TIGRFAM: Carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit YP_004340008.1 COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; InterPro IPR004463; KEGG: pag:PLES_47851 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; SPTR: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase YP_004340009.1 COGs: COG4123 O-methyltransferase; InterPro IPR007848; KEGG: sul:SYO3AOP1_0212 methyltransferase small; PFAM: Methyltransferase small; SPTR: Methyltransferase small; PFAM: Methyltransferase small domain YP_004340010.1 COGs: COG1154 Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; InterPro IPR005475; IPR005477; IPR005476; KEGG: chy:CHY_1985 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SMART: Transketolase-like, pyrimidine-binding domain; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: Deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_004340011.1 COGs: COG1729 conserved hypothetical protein; InterPro IPR014162; KEGG: dds:Ddes_0388 tol-pal system protein YbgF; SPTR: Tol-pal system protein YbgF; TIGRFAM: Tol-Pal system, YbgF; TIGRFAM: tol-pal system protein YbgF YP_004340012.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR014169; IPR006665; KEGG: tye:THEYE_A2098 peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Outer membrane protein and related peptidoglycan-associated; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA family; TIGRFAM: peptidoglycan-associated lipoprotein YP_004340013.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR014169; IPR006665; KEGG: gme:Gmet_3499 OmpA/MotB; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA family; TIGRFAM: peptidoglycan-associated lipoprotein YP_004340014.1 COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: sfu:Sfum_0755 TolB domain-containing protein; PFAM: WD40-like Beta Propeller; SPTR: Protein tolB; PFAM: WD40-like Beta Propeller Repeat; TolB amino-terminal domain; TIGRFAM: tol-pal system beta propeller repeat protein TolB YP_004340015.1 KEGG: abo:ABO_0757 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004340016.1 COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: tye:THEYE_A0958 TolR protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein; PFAM: Biopolymer transport protein ExbD/TolR YP_004340017.1 COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: tye:THEYE_A0959 TolQ protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: TolQ protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004340018.1 COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); HAMAP: ATPase, F1 complex, delta/epsilon subunit; InterPro IPR001469; IPR020546; KEGG: pmg:P9301_16291 F0F1 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; SPTR: ATP synthase epsilon chain; TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria) YP_004340019.1 COGs: COG0055 F0F1-type ATP synthase beta subunit; HAMAP: ATPase, F1 complex, beta subunit; InterProIPR003593; IPR005722; IPR004100; IPR000194; IPR 000793; KEGG: ddf:DEFDS_1886 F0F1-type ATP synthase subunit beta; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP synthase subunit beta; TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit YP_004340020.1 COGs: COG0224 F0F1-type ATP synthase gamma subunit; HAMAP: ATPase, F1 complex, gamma subunit; InterPro IPR000131; KEGG: pth:PTH_2813 F0F1 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit YP_004340021.1 COGs: COG0056 F0F1-type ATP synthase alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; InterPro IPR005294; IPR004100; IPR000194; IPR000793; KEGG: geo:Geob_0449 F0F1 ATP synthase subunit alpha; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit YP_004340022.1 COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); HAMAP: ATPase, F1 complex, OSCP/delta subunit; InterPro IPR000711; KEGG: ppd:Ppro_1504 F0F1 ATP synthase subunit delta; PFAM: ATPase, F1 complex, OSCP/delta subunit; SPTR: ATP synthase subunit delta; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit YP_004340023.1 COGs: COG0711 F0F1-type ATP synthase subunit b; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; InterPro IPR002146; KEGG: ddf:DEFDS_1890 F0F1-type ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; SPTR: F0F1-type ATP synthase, B subunit; PFAM: ATP synthase B/B' CF(0) YP_004340024.1 InterPro IPR002146; KEGG: ddf:DEFDS_1891 F0F1-type ATP synthase B' subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; SPTR: F0F1-type ATP synthase, B' subunit; PFAM: ATP synthase B/B' CF(0) YP_004340025.1 KEGG: mif:Metin_0312 UspA domain protein; SPTR: UspA domain protein; PFAM: Universal stress protein family YP_004340026.1 COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: tye:THEYE_A0731 arsenical pump membrane protein; PFAM: Divalent ion symporter; SPTR: Arsenical pump membrane protein; PFAM: Citrate transporter YP_004340027.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR003115; IPR004437; KEGG: tjr:TherJR_3008 ParB-like partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: ParB-like partition protein; TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins YP_004340028.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: gct:GC56T3_3471 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Sporulation initiation inhibitor protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004340029.1 COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP: N-acetylglucosaminyltransferase, MurG; InterPro IPR006009; IPR004276; IPR007235; KEGG: mxa:MXAN_5604 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; PRIAM: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG; PFAM: Glycosyltransferase family 28 N-terminal domain; Glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_004340030.1 COGs: COG0497 ATPase involved in DNA repair; InterPro IPR003593; IPR003395; KEGG: fnu:FN0268 DNA repair protein RecN; PFAM: RecF/RecN/SMC; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein recN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_004340031.1 COGs: COG0061 sugar kinase; HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; InterPro IPR002504; KEGG: gme:Gmet_0941 ATP-NAD/AcoX kinase; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD kinase YP_004340032.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593; IPR003439; KEGG: bpt:Bpet2325 high-affinity branched-chain amino acid transport, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: ABC transporter YP_004340033.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593; IPR003439; KEGG: gmc:GY4MC1_0475 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_004340034.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: gur:Gura_2128 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component YP_004340035.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dar:Daro_0367 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Branched-chain amino acid ABC-type transport system, permease components; manually curated; PFAM: Branched-chain amino acid transport system / permease component YP_004340036.1 COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: tye:THEYE_A0845 hypothetical protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing; SPTR: Conserved protein; PFAM: Macro domain YP_004340037.1 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: ava:Ava_0849 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2 YP_004340038.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: tte:TTE0949 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Predicted glycosyltransferases; PFAM: Glycosyl transferases group 1 YP_004340039.1 InterPro IPR002509; KEGG: saf:SULAZ_1151 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase YP_004340040.1 KEGG: ddf:DEFDS_1794 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340041.1 COGs: COG0525 Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; InterPro IPR002303; IPR002300; IPR013155; IPR019499; KEGG: dat:HRM2_20900 ValS; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA-binding arm; PRIAM: Valine--tRNA ligase; SPTR: Valyl-tRNA synthetase; TIGRFAM: Valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase YP_004340042.1 COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: gbm:Gbem_2193 indolepyruvate oxidoreductase subunit beta; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: Indolepyruvate ferredoxin oxidoreductase, beta subunit; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, beta subunit YP_004340043.1 COGs: COG4231 Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits; InterPro IPR017721; IPR002880; IPR011766; IPR001450; KEGG: chy:CHY_0121 indolepyruvate ferredoxin oxidoreductase, IorA subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; 4Fe-4S binding domain; PRIAM: Indolepyruvate ferredoxin oxidoreductase; SPTR: Indolepyruvate ferredoxin oxidoreductase, IorA subunit; TIGRFAM: Indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit YP_004340044.1 COGs: COG0780 Enzyme related to GTP cyclohydrolase I; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; InterPro IPR016856; IPR020602; KEGG: aae:aq_931 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: PreQ(1) synthase; SPTR: NADPH-dependent 7-cyano-7-deazaguanine reductase; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; PFAM: GTP cyclohydrolase I; TIGRFAM: 7-cyano-7-deazaguanine reductase YP_004340045.1 COGs: COG0606 ATPase with chaperone activity; InterPro IPR003593; IPR004482; IPR000523; KEGG: ddf:DEFDS_2092 Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: Mg chelatase-related protein; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein YP_004340046.1 COGs: COG3401 Fibronectin type 3 domain-containing protein; InterPro IPR003961; KEGG: ant:Arnit_1403 fibronectin type III domain-containing protein; PFAM: Fibronectin, type III; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain YP_004340047.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006225; IPR006145; KEGG: pjd:Pjdr2_3869 pseudouridine synthase, RluA family; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family YP_004340048.1 COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR011816; IPR001264; IPR001460; KEGG: dth:DICTH_1000 penicillin-binding protein 1A (PBP-1a) (PBP1a); PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Penicillin-binding protein 1A (PBP-1a) (PBP1a); TIGRFAM: Penicillin-binding protein 1A; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1B; penicillin-binding protein, 1A family YP_004340049.1 InterPro IPR019734; IPR001440; IPR013105; KEGG: tet:TTHERM_00856770 TPR Domain containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR Domain containing protein; PFAM: Tetratricopeptide repeat YP_004340050.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: tye:THEYE_A0342 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII; PRIAM: Aspartate transaminase; SPTR: Aspartate aminotransferase; PFAM: Aminotransferase class I and II YP_004340051.1 COGs: COG0669 Phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR004821; IPR001980; IPR004820; KEGG: csc:Csac_1792 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_004340052.1 COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: wsu:WS1966 N6-adenine-specific methylase; PFAM: RNA methyltransferase, RsmD; SPTR: Putative uncharacterized protein; TIGRFAM: RNA methyltransferase, RsmD; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family YP_004340053.1 COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: chy:CHY_0548 U32 family peptidase; PFAM: Peptidase U32; SPTR: Peptidase, U32 family; PFAM: Peptidase family U32 YP_004340054.1 COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; HAMAP: Uncharacterised protein family UPF0173, metal-dependent hydrolase; InterPro IPR001279; IPR022877; KEGG: drm:Dred_1740 metal-dependent hydrolase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: UPF0173 metal-dependent hydrolase Dred_1740; PFAM: Metallo-beta-lactamase superfamily YP_004340055.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311; IPR001460; KEGG: gur:Gura_3980 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain YP_004340056.1 KEGG: lsg:lse_1993 sensor histidine kinase; SPTR: Probable GTP-binding protein engB YP_004340057.1 COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: aac:Aaci_1269 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW YP_004340058.1 COGs: COG2001 conserved hypothetical protein; HAMAP: MraZ; InterPro IPR003444; IPR020603; KEGG: toc:Toce_0943 MraZ protein; PFAM: MraZ domain; SPTR: Protein MraZ; TIGRFAM: MraZ; PFAM: MraZ protein; TIGRFAM: mraZ protein YP_004340059.1 InterPro IPR001789; KEGG: esi:Exig_3031 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; SPTR: Alkaline phosphatase synthesis transcriptional regulatory protein PhoP; PFAM: Response regulator receiver domain YP_004340060.1 COGs: COG2229 GTPase; InterPro IPR005225; IPR013684; KEGG: aae:aq_1844 hypothetical protein; PFAM: Mitochondrial Rho-like; SPTR: Putative uncharacterized protein; TIGRFAM: Small GTP-binding protein; PFAM: Ras family; TIGRFAM: small GTP-binding protein domain YP_004340061.1 COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR005746; IPR013766; KEGG: tye:THEYE_A1926 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_004340062.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR005982; IPR013027; KEGG: hya:HY04AAS1_0622 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Thioredoxin-disulfide reductase; SPTR: Thioredoxin reductase; TIGRFAM: Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_004340063.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: dau:Daud_1547 ABC-3 protein; PFAM: ABC-3; SPTR: ABC-3 protein; PFAM: ABC 3 transport family YP_004340064.1 COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003593; IPR003439; KEGG: ddf:DEFDS_1939 zinc ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Zinc ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004340065.1 COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127; KEGG: slp:Slip_1745 periplasmic solute binding protein; PFAM: ABC transporter metal-binding lipoprotein; SPTR: Periplasmic solute binding protein; PFAM: Periplasmic solute binding protein family YP_004340066.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760; KEGG: tye:THEYE_A0972 probable inorganic polyphosphate/ATP-NAD kinase (poly(P)/ATP NAD kinase); PFAM: Inositol monophosphatase; PRIAM: Inositol-phosphate phosphatase; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase); PFAM: Inositol monophosphatase family YP_004340067.1 COGs: COG0761 Penicillin tolerance protein; HAMAP: LytB protein; InterPro IPR003451; KEGG: adg:Adeg_1146 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: Hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: LytB protein; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) YP_004340068.1 COGs: COG0283 Cytidylate kinase; HAMAP: Cytidylate kinase; InterPro IPR003136; IPR011994; KEGG: pmo:Pmob_1620 cytidylate kinase; PFAM: Cytidylate kinase domain; PRIAM: Cytidylate kinase; SPTR: Cytidylate kinase; TIGRFAM: Cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase YP_004340069.1 COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: tye:THEYE_A1766 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; PRIAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase YP_004340070.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; HAMAP: Histidinol-phosphate aminotransferase; InterPro IPR005861; IPR004839; KEGG: aar:Acear_1028 histidinol phosphate aminotransferase apoenzyme; PFAM: Aminotransferase, class I/classII; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol-phosphate aminotransferase 1; TIGRFAM: Histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase YP_004340071.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: ddf:DEFDS_1087 hypothetical protein; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Putative uncharacterized protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004340072.1 COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004408; IPR013196; IPR004143; IPR003142; KEGG: ttm:Tthe_0632 biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11; Biotin protein ligase, C-terminal; PRIAM: Biotin--[acetyl-CoA-carboxylase] ligase; SPTR: Biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region YP_004340073.1 COGs: COG0422 Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: adg:Adeg_0145 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; SPTR: Phosphomethylpyrimidine synthase; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_004340074.1 COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR001453; KEGG: pfu:PF0476 competence damage-inducible protein A; PFAM: Molybdopterin binding; SMART: Molybdopterin binding; SPTR: Protein TERMP_328; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain YP_004340075.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: tye:THEYE_A1823 DNA-binding protein HU 1; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: DNA-binding protein HU; PFAM: Bacterial DNA-binding protein YP_004340076.1 COGs: COG0498 Threonine synthase; InterPro IPR004450; IPR001926; KEGG: dap:Dacet_2455 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Threonine synthase; SPTR: Threonine synthase; TIGRFAM: Threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase YP_004340077.1 COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027; IPR004099; KEGG: ddf:DEFDS_0516 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: CoA-disulfide reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_004340078.1 InterPro IPR017515; IPR004360; KEGG: amu:Amuc_0200 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Methylmalonyl-CoA epimerase; TIGRFAM: Methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase YP_004340079.1 KEGG: sul:SYO3AOP1_1496 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340080.1 COGs: COG1703 Putative periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129; KEGG: dap:Dacet_1929 LAO/AO transport system ATPase; PFAM: ArgK protein; SPTR: LAO/AO transport system ATPase; TIGRFAM: ArgK protein; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase YP_004340081.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006098; IPR006159; IPR006099; IPR006158; KEGG: dap:Dacet_1930 methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase, large subunit; TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain YP_004340082.1 COGs: COG2951 Membrane-bound lytic murein transglycosylase B; KEGG: ddf:DEFDS_0819 membrane-bound lytic murein transglycosylase B; SPTR: Membrane-bound lytic murein transglycosylase B YP_004340083.1 COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); HAMAP: AICARFT/IMPCHase bienzyme; InterPro IPR011607; IPR013982; IPR002695; KEGG: ddf:DEFDS_1187 bifunctional purine biosynthesis protein PurH; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; SPTR: Bifunctional purine biosynthesis protein purH; TIGRFAM: AICARFT/IMPCHase bienzyme; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_004340084.1 COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; InterPro IPR005882; IPR005835; IPR001451; KEGG: ddf:DEFDS_1946 N-acetylglucosamine biosynthesis bifunctional enzyme; PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat; PRIAM: Glucosamine-1-phosphate N-acetyltransferase; SPTR: Bifunctional protein glmU; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase YP_004340085.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR000644; IPR001807; KEGG: ddf:DEFDS_1871 chloride channel protein, CIC family; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: Chloride channel protein, CIC family; PFAM: CBS domain; Voltage gated chloride channel YP_004340086.1 COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; InterPro IPR005855; IPR000583; IPR001347; KEGG: ddf:DEFDS_1947 glucosamine--fructose-6-phosphate aminotransferase; PFAM: Sugar isomerase (SIS); Glutamine amidotransferase, class-II; PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: Glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_004340087.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR000644; IPR001807; KEGG: ddf:DEFDS_1871 chloride channel protein, CIC family; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: Chloride channel protein, CIC family; PFAM: CBS domain; Voltage gated chloride channel YP_004340088.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: tpd:Teth39_1695 ATP-dependent DNA helicase PcrA; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase YP_004340089.1 KEGG: tau:Tola_2853 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340090.1 COGs: COG1214 Inactive homolog of metal-dependent protease putative molecular chaperone; InterPro IPR000905; KEGG: ddf:DEFDS_1518 glycoprotein endopeptidase; PFAM: Peptidase M22, glycoprotease; SPTR: Glycoprotein endopeptidase; PFAM: Glycoprotease family YP_004340091.1 COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: ate:Athe_2124 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033563; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1015) YP_004340092.1 COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: gsu:GSU1720 6-pyruvoyl tetrahydrobiopterin synthase family protein; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: 6-pyruvoyl tetrahydrobiopterin synthase family protein; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein YP_004340093.1 COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR006260; KEGG: ddf:DEFDS_1460 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004340094.1 COGs: COG1893 Ketopantoate reductase; InterPro IPR003710; IPR013332; IPR013752; KEGG: mru:mru_1320 2-dehydropantoate 2-reductase PanE; PFAM: Ketopantoate reductase ApbA/PanE, C-terminal; Ketopantoate reductase ApbA/PanE, N-terminal; PRIAM: 2-dehydropantoate 2-reductase; SPTR: 2-dehydropantoate 2-reductase; TIGRFAM: Ketopantoate reductase ApbA/PanE; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase YP_004340095.1 KEGG: pat:Patl_1120 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340096.1 KEGG: pth:PTH_1495 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1446) YP_004340097.1 COGs: COG0853 Aspartate 1-decarboxylase; HAMAP: Aspartate decarboxylase; InterPro IPR003190; KEGG: dap:Dacet_1429 aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: Aspartate decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase YP_004340098.1 COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721; IPR004821; KEGG: ate:Athe_1980 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: Pantoate-beta-alanine ligase; Cytidyltransferase-related; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain YP_004340099.1 COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: tye:THEYE_A0277 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004340100.1 COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: tte:TTE2369 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR: 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_004340101.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR019881; IPR004839; KEGG: aae:aq_273 LL-diaminopimelate aminotransferase; PFAM: Aminotransferase, class I/classII; PRIAM: LL-diaminopimelate aminotransferase; SPTR: LL-diaminopimelate aminotransferase; TIGRFAM: LL-diaminopimelate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: LL-diaminopimelate aminotransferase YP_004340102.1 COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070; KEGG: mru:mru_0504 SUA5/YciO/YrdC/YwlC family translation factor; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family translation factor; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_004340103.1 KEGG: bha:BH0827 fructose 1-phosphate kinase YP_004340104.1 InterPro IPR002197; IPR001584; KEGG: csc:Csac_0463 hypothetical protein; PFAM: Integrase, catalytic core; Helix-turn-helix, Fis-type; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, Fis family; Integrase core domain YP_004340105.1 COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR000304; IPR004455; KEGG: mmh:Mmah_0300 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: Pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase YP_004340106.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR000551; KEGG: ddf:DEFDS_1926 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein YP_004340107.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; IPR002939; KEGG: rca:Rcas_2836 chaperone DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone DnaJ domain protein; PFAM: DnaJ domain; DnaJ C terminal region YP_004340108.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: ddf:DEFDS_1928 heat shock protein Hsp20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family YP_004340109.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593; IPR017730; IPR004176; IPR003959; IPR 013093; IPR019489; KEGG: bcg:BCG9842_B4119 ATP-dependent Clp protease, ATP-binding subunit ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: Chaperone protein clpB 1; TIGRFAM: Chaperonin ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB YP_004340110.1 KEGG: ddf:DEFDS_0858 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340111.1 InterPro IPR012902; KEGG: ddf:DEFDS_0859 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004340112.1 InterPro IPR012902; KEGG: ddf:DEFDS_0860 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340113.1 InterPro IPR012902; KEGG: ddf:DEFDS_0861 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004340114.1 COGs: COG3419 Tfp pilus assembly protein tip-associated adhesin PilY1; KEGG: ddf:DEFDS_0862 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340115.1 KEGG: bhr:BH0475 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340116.1 COGs: COG3376 High-affinity nickel permease; InterPro IPR004688; IPR011541; KEGG: hya:HY04AAS1_1396 high-affinity nickel-transporter; PFAM: Nickel/cobalt transporter, high-affinity; SPTR: High-affinity nickel-transporter; TIGRFAM: Nickel/cobalt transporter, high-affinity, bacteria; PFAM: High-affinity nickel-transport protein; TIGRFAM: high-affinity nickel-transporter, HoxN/HupN/NixA family YP_004340117.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587; IPR000994; KEGG: gme:Gmet_2690 peptidase M24; PFAM: Peptidase M24, structural domain; Creatinase; SPTR: Peptidase M24; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_004340118.1 COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR004392; IPR003495; KEGG: pmx:PERMA_0918 hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; SPTR: Hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB YP_004340119.1 COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); InterPro IPR000688; KEGG: dap:Dacet_2414 hydrogenase expression/synthesis HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF; SPTR: Putative uncharacterized protein; PFAM: Hydrogenase expression/synthesis hypA family; TIGRFAM: hydrogenase nickel insertion protein HypA YP_004340120.1 COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: pmx:PERMA_1017 Ni/Fe hydrogenase, expression/formation protein; PFAM: Peptidase A31, hydrogen uptake protein; SPTR: Ni/Fe hydrogenase, expression/formation protein; TIGRFAM: Peptidase A31, hydrogen uptake protein; PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease YP_004340121.1 COGs: COG1969 Ni Fe-hydrogenase I cytochrome b subunit; InterPro IPR000516; IPR011577; KEGG: pdi:BDI_1813 NiFe hydrogenase small subunit, HupC; SPTR: NiFe hydrogenase small subunit, HupC; TIGRFAM: Nickel-dependent hydrogenase b-type cytochrome subunit; PFAM: Cytochrome b(N-terminal)/b6/petB; TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit YP_004340122.1 COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501; KEGG: pmx:PERMA_0696 uptake hydrogenase large subunit (hydrogenlyase)(membrane-bound hydrogenase large subunit); PFAM: Nickel-dependent hydrogenase, large subunit; PRIAM: Cytochrome-c3 hydrogenase; SPTR: Uptake hydrogenase large subunit (Hydrogenlyase)(Membrane-bound hydrogenase large subunit); PFAM: Nickel-dependent hydrogenase YP_004340123.1 COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR001821; IPR006311; IPR006137; KEGG: sse:Ssed_1908 hydrogen:quinone oxidoreductase; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: Hydrogen:quinone oxidoreductase; SPTR: Quinone-reactive Ni/Fe-hydrogenase small chain; TIGRFAM: [Ni-Fe]-hydrogenase, small subunit; Twin-arginine translocation pathway, signal sequence; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA) YP_004340124.1 InterPro IPR011658; KEGG: sus:Acid_2201 PA14 domain-containing protein; SMART: PA14; SPTR: PA14 domain protein; PFAM: PA14 domain; OmpA family YP_004340125.1 InterPro IPR014995; KEGG: dak:DaAHT2_0598 domain of unknown function DUF1844; PFAM: Protein of unknown function DUF1844; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1844) YP_004340126.1 InterPro IPR000620; KEGG: ddf:DEFDS_1812 drug/metabolite transporter; PFAM: Drug/metabolite transporter; SPTR: Drug/metabolite transporter; PFAM: EamA-like transporter family YP_004340127.1 InterPro IPR000620; KEGG: tpd:Teth39_1647 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family YP_004340128.1 InterPro IPR000620; KEGG: ddf:DEFDS_1814 drug/metabolite transporter; PFAM: Drug/metabolite transporter; SPTR: Drug/metabolite transporter; PFAM: EamA-like transporter family YP_004340129.1 COGs: COG1802 Transcriptional regulators; InterPro IPR000524; IPR011711; KEGG: ddf:DEFDS_2105 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_004340130.1 KEGG: afu:AF1942m hypothetical protein; SPTR: Uncharacterized protein AF_1942 YP_004340131.1 KEGG: cyj:Cyan7822_2675 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340132.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR005517; IPR000640; IPR005225; IPR000795; IPR 004161; KEGG: sat:SYN_02930 elongation factor G; PFAM: Translation elongation factor EFG/EF2, domain IV; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor G 2; TIGRFAM: Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004340133.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: mfe:Mefer_0024 UspA domain protein; PFAM: UspA; SPTR: UspA domain protein; PFAM: Universal stress protein family YP_004340134.1 COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR000534; IPR005986; IPR012280; KEGG: sat:SYN_00911 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SMART: Semialdehyde dehydrogenase, NAD-binding; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) YP_004340135.1 COGs: COG0193 Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: chy:CHY_0196 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase YP_004340136.1 COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc); HAMAP: Ribosomal protein L25, long-form; InterPro IPR001021; IPR020055; KEGG: cpo:COPRO5265_0760 ribosomal protein L25, Ctc-form; PFAM: Ribosomal protein L25, short-form; SPTR: 50S ribosomal protein L25; TIGRFAM: Ribosomal protein L25, long-form; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_004340137.1 COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR005946; IPR000836; KEGG: ctc:CTC00188 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_004340138.1 COGs: COG2088 Uncharacterized protein involved in the regulation of septum location; HAMAP: septation protein spoVG; InterPro IPR007170; KEGG: ckr:CKR_0120 regulatory protein SpoVG; PFAM: Sporulation stage V, protein G; SPTR: Putative uncharacterized protein; PFAM: SpoVG YP_004340139.1 COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR004424; IPR006204; IPR013750; KEGG: swo:Swol_0064 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_004340140.1 COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: tko:TK1891 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1; PRIAM: S-adenosylhomocysteine deaminase; SPTR: Amidohydrolase family, putative; PFAM: Amidohydrolase family YP_004340141.1 COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR011268; IPR000845; KEGG: cpo:COPRO5265_0791 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: Nucleoside phosphorylase domain; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: Inosine guanosine/xanthosine phosphorylase; PFAM: Phosphorylase superfamily; TIGRFAM: inosine guanosine and xanthosine phosphorylase family YP_004340142.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094; IPR004113; KEGG: gur:Gura_0648 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: FAD linked oxidase domain protein; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD YP_004340143.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: abu:Abu_1266 anaerobic glycerol-3-phosphate dehydrogenase, subunit C (GlpC); PFAM: Cysteine-rich domain; SPTR: Anaerobic glycerol-3-phosphate dehydrogenase, subunit C (GlpC); PFAM: Cysteine-rich domain YP_004340144.1 COGs: COG1210 UDP-glucose pyrophosphorylase; InterPro IPR005771; IPR005835; KEGG: saf:SULAZ_1176 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: UTP--glucose-1-phosphate uridylyltransferase; SPTR: UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase YP_004340145.1 COGs: COG0172 Seryl-tRNA synthetase; HAMAP: Seryl-tRNA synthetase, class IIa; InterPro IPR002317; IPR015866; IPR002314; KEGG: tye:THEYE_A0018 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: Seryl-tRNA synthetase, class IIa; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase YP_004340146.1 COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: ccb:Clocel_1851 hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase, laccase; SPTR: Putative uncharacterized protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family YP_004340147.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR003607; IPR003018; IPR006674; KEGG: dth:DICTH_1958 GGDEF domain/hd domain protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; GAF; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Ggdef domain/hd domain protein; PFAM: HD domain; GGDEF domain; GAF domain YP_004340148.1 COGs: COG2984 ABC-type uncharacterized transport system periplasmic component; InterPro IPR007487; KEGG: tye:THEYE_A0144 lipoprotein, putative; PFAM: ABC transporter substrate binding protein; SPTR: Lipoprotein, putative; PFAM: ABC transporter substrate binding protein YP_004340149.1 KEGG: sde:Sde_0296 ATPase; SPTR: Putative uncharacterized protein YP_004340150.1 KEGG: gem:GM21_0269 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340151.1 KEGG: paa:Paes_1915 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: CARDB YP_004340152.1 InterPro IPR008538; KEGG: ddf:DEFDS_1242 hypothetical protein; PFAM: Domain of unknown function DUF820; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF820) YP_004340153.1 InterPro IPR006626; KEGG: ddf:DEFDS_1152 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340154.1 COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR003593; IPR007831; IPR001482; KEGG: ddf:DEFDS_1256 type IV pilus assembly protein PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Type IV pilus assembly protein PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E YP_004340155.1 InterPro IPR012902; KEGG: ddf:DEFDS_1243 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004340156.1 COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: ddf:DEFDS_1244 general secretion pathway protein F; PFAM: Type II secretion system F domain; SPTR: General secretion pathway protein F; PFAM: Bacterial type II secretion system protein F domain YP_004340157.1 KEGG: ddf:DEFDS_1245 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial type II secretion system protein G YP_004340158.1 InterPro IPR012902; KEGG: ddf:DEFDS_1246 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004340159.1 InterPro IPR012902; KEGG: ddf:DEFDS_1247 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004340160.1 InterPro IPR012902; KEGG: ddf:DEFDS_1248 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004340161.1 KEGG: dtu:Dtur_1030 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340162.1 COGs: COG3267 Type II secretory pathway component ExeA (predicted ATPase); InterPro IPR003593; KEGG: ddf:DEFDS_1249 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: Archaeal ATPase YP_004340163.1 KEGG: sat:SYN_00893 membrane bound protein mediates protein-protein interactions; SPTR: Membrane bound protein mediates protein-protein interactions YP_004340164.1 KEGG: ddf:DEFDS_1251 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340165.1 KEGG: ddf:DEFDS_1252 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340166.1 KEGG: ddf:DEFDS_1253 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340167.1 KEGG: uue:UUR10_0115 hypothetical protein; SPTR: Beta-propeller domains of methanol dehydrogenase type YP_004340168.1 COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR012833; IPR005144; KEGG: tye:THEYE_A0505 anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone; SPTR: Anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; PFAM: ATP cone domain; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; intein N-terminal splicing region YP_004340169.1 COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR012840; IPR007197; KEGG: cpo:COPRO5265_0008 anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM; SPTR: Anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic-like; PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein YP_004340170.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910; IPR000531; KEGG: glo:Glov_3556 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004340171.1 InterPro IPR006260; KEGG: ant:Arnit_1077 TonB family protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004340172.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593; IPR003439; KEGG: aar:Acear_0770 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter YP_004340173.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: ddf:DEFDS_0535 iron ABC transporter permease; PFAM: ABC transporter permease protein; SPTR: Transport system permease protein; PFAM: FecCD transport family YP_004340174.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: ddf:DEFDS_0533 iron ABC transporter substrate-binding protein; PFAM: Periplasmic binding protein; SPTR: Iron ABC transporter, substrate-binding protein; PFAM: Periplasmic binding protein YP_004340175.1 COGs: COG5421 Transposase; InterPro IPR002559; KEGG: amc:MADE_02905 transposase, IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain YP_004340176.1 KEGG: sat:SYN_01865 sex pilus assembly protein; SPTR: Sex pilus assembly protein; PFAM: F pilus assembly Type-IV secretion system for plasmid transfer YP_004340177.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sul:SYO3AOP1_1122 transposase mutator type; PFAM: Transposase, mutator type; SPTR: Transposase mutator type; PFAM: Transposase, Mutator family YP_004340178.1 KEGG: fgr:FG03591.1 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340179.1 KEGG: lby:Lbys_0684 hypothetical protein; SPTR: Methyl-accepting chemotaxis sensory transducer YP_004340180.1 KEGG: zro:ZYRO0F06468g hypothetical protein; SPTR: WD-40 repeat protein YP_004340181.1 KEGG: hya:HY04AAS1_1031 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340182.1 COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: nam:NAMH_0688 mechanosensitive ion channel family protein; PFAM: Mechanosensitive ion channel MscS; SPTR: Mechanosensitive ion channel family protein; PFAM: Mechanosensitive ion channel YP_004340183.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; InterProIPR006638; IPR005839; IPR005840; IPR013848; IPR 007197; IPR002792; KEGG: pmx:PERMA_0494 hypothetical protein; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family YP_004340184.1 COGs: COG1217 membrane GTPase involved in stress response; InterPro IPR000640; IPR005225; IPR006298; IPR000795; KEGG: dal:Dalk_1181 GTP-binding protein TypA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain YP_004340185.1 COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: taf:THA_942 oxidoreductase, 2-nitropropane dioxygenase family; PFAM: 2-nitropropane dioxygenase, NPD; SPTR: Oxidoreductase, 2-nitropropane dioxygenase family; PFAM: 2-nitropropane dioxygenase YP_004340186.1 InterPro IPR007165; KEGG: vap:Vapar_0116 membrane protein of unknown function; PFAM: Membrane protein of unknown function; SPTR: Putative uncharacterized protein; PFAM: Membrane protein of unknown function YP_004340187.1 KEGG: sat:SYN_02375 hypothetical protein; SPTR: Hypothetical membrane protein; PFAM: Rare lipoprotein B family YP_004340188.1 COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR002302; IPR002300; IPR013155; KEGG: glo:Glov_2116 leucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: Valine--tRNA ligase; SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family YP_004340189.1 COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: Dihydroxy-acid dehydratase; InterPro IPR004404; IPR000581; KEGG: sat:SYN_01708 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase YP_004340190.1 COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: pub:SAR11_0872 4-hydroxybenzoyl-CoA thioesterase family protein; PFAM: Thioesterase superfamily; SPTR: 4-hydroxybenzoyl-CoA thioesterase family protein; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family YP_004340191.1 COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672; KEGG: hor:Hore_19060 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); SPTR: Glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase YP_004340192.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660; IPR004089; KEGG: hna:Hneap_1547 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: Methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004340193.1 COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771; IPR011289; KEGG: ddf:DEFDS_0062 fructose-bisphosphate aldolase class II; PFAM: Ketose-bisphosphate aldolase, class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: Fructose-bisphosphate aldolase, class II; TIGRFAM: Fructose-1,6-bisphosphate aldolase, class 2; Ketose-bisphosphate aldolase, class-II; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist YP_004340194.1 COGs: COG0731 Fe-S oxidoreductase; InterPro IPR007197; KEGG: ddf:DEFDS_0828 hypothetical protein; PFAM: Radical SAM; SPTR: Putative uncharacterized protein; PFAM: Radical SAM superfamily YP_004340195.1 COGs: COG1184 Translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; InterPro IPR000649; KEGG: tac:Ta0910 translation initiation factor IF-2B subunit delta; PFAM: Initiation factor 2B-related; SPTR: Translation initiation factor eIF-2B, subunit delta related protein; PFAM: Initiation factor 2 subunit family YP_004340196.1 KEGG: cob:COB47_2034 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340197.1 KEGG: nam:NAMH_1390 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340198.1 COGs: COG1592 Rubrerythrin; InterPro IPR003251; IPR004039; KEGG: tte:TTE0487 rubrerythrin; PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin, putative; PFAM: Rubrerythrin YP_004340199.1 COGs: COG1533 DNA repair photolyase; InterPro IPR007197; KEGG: wch:wcw_0148 putative DNA repair photolyase; PFAM: Radical SAM; SPTR: Putative lyase YP_004340200.1 KEGG: fta:FTA_1805 lipoprotein releasing system, subunit A, outer membrane lipoproteins carrier; SPTR: Outer-membrane lipoprotein carrier protein; PFAM: Outer membrane lipoprotein carrier protein LolA YP_004340201.1 COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR005720; IPR012135; KEGG: dal:Dalk_0800 dihydroorotate dehydrogenase family protein; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; SPTR: Dihydroorotate dehydrogenase; TIGRFAM: Dihydroorotate dehydrogenase, class 1; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein YP_004340202.1 COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR008333; IPR001433; IPR019480; KEGG: gur:Gura_2151 oxidoreductase FAD/NAD(P)-binding subunit; PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; SPTR: Dihydroorotate oxidase B, electron transfer subunit; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain YP_004340203.1 COGs: COG0782 Transcription elongation factor; HAMAP: Transcription elongation factor greA; InterPro IPR006359; IPR022691; IPR001437; KEGG: tye:THEYE_A0541 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal; SPTR: Transcription elongation factor GreA; TIGRFAM: Transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_004340204.1 COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR011607; IPR006275; IPR005481; IPR005479; IPR 005480; KEGG: fpl:Ferp_0317 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; Methylglyoxal synthase-like domain; PRIAM: Carbamoyl-phosphate synthase (ammonia); SMART: Methylglyoxal synthase-like domain; SPTR: Carbamoyl-phosphate synthase large chain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit YP_004340205.1 COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: tjr:TherJR_2690 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_004340206.1 COGs: COG4796 Type II secretory pathway component HofQ; InterPro IPR011662; IPR013355; IPR005644; IPR004846; KEGG: pst:PSPTO_5128 type IV pilus biogenesis protein PilQ; PFAM: Type II/III secretion system; Secretin/TonB, short N-terminal; NolW-like; SMART: Secretin/TonB, short N-terminal; SPTR: Type IV pilus biogenesis protein PilQ; TIGRFAM: Type IV pilus secretin PilQ; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ YP_004340207.1 KEGG: aoe:Clos_2823 pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_004340208.1 COGs: COG3167 Tfp pilus assembly protein PilO; KEGG: geo:Geob_3068 pilus assembly protein PilO; SPTR: Pilus assembly protein PilO; PFAM: Pilus assembly protein, PilO YP_004340209.1 InterPro IPR007813; KEGG: gur:Gura_1811 fimbrial assembly family protein; PFAM: Fimbrial assembly; SPTR: Fimbrial assembly family protein; PFAM: Fimbrial assembly protein (PilN) YP_004340210.1 COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: ddf:DEFDS_1728 type IV pilus assembly protein PilM; SPTR: Type IV pilus assembly protein PilM; TIGRFAM: Type IV pilus assembly protein PilM; PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM YP_004340211.1 KEGG: tbd:Tbd_2553 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340212.1 COGs: COG1171 Threonine dehydratase; InterPro IPR005787; IPR001926; IPR001721; KEGG: dps:DP0889 threonine dehydratase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; SPTR: Threonine dehydratase, biosynthetic; TIGRFAM: Threonine dehydratase I; PFAM: C-terminal regulatory domain of Threonine dehydratase; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine ammonia-lyase, biosynthetic, long form; threonine dehydratase, medium form YP_004340213.1 COGs: COG0695 Glutaredoxin and related protein; InterPro IPR011911; IPR002109; KEGG: dth:DICTH_1736 hypothetical protein; PFAM: Glutaredoxin; SPTR: Glutaredoxin; TIGRFAM: Glutaredoxin-like protein, YruB; PFAM: Glutaredoxin; TIGRFAM: Glutaredoxin-like protein, YruB-family YP_004340214.1 COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: ddf:DEFDS_0964 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: Phenylacetate--CoA ligase; PFAM: AMP-binding enzyme; TIGRFAM: phenylacetate-CoA ligase YP_004340215.1 COGs: COG4747 ACT domain-containing protein; InterPro IPR002912; KEGG: ddf:DEFDS_0963 hypothetical protein; PFAM: Amino acid-binding ACT; SPTR: Putative uncharacterized protein; PFAM: ACT domain YP_004340216.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: geo:Geob_2799 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region YP_004340217.1 KEGG: dat:HRM2_37240 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340218.1 KEGG: cst:CLOST_1737 flagellar export protein FliJ; SPTR: Flagellar export protein FliJ YP_004340219.1 COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; InterPro IPR003593; IPR005714; IPR004100; IPR000194; KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Flagellar protein export ATPase FliI; TIGRFAM: ATPase, type III secretion system, FliI/YscN; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI YP_004340220.1 COGs: COG1317 Flagellar biosynthesis/type III secretory pathway protein; InterPro IPR018035; KEGG: nam:NAMH_1099 flagellar assembly protein H; PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; SPTR: Flagellar assembly protein FliH; PFAM: Flagellar assembly protein FliH YP_004340221.1 COGs: COG1536 Flagellar motor switch protein; InterPro IPR000090; IPR023087; KEGG: ddf:DEFDS_0523 flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG, C-terminal; SPTR: Flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG YP_004340222.1 COGs: COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; InterPro IPR000067; IPR006182; IPR013556; KEGG: nam:NAMH_1101 flagellar MS-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal; SPTR: Flagellar M-ring protein FliF; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein of YscJ/FliF family; Flagellar M-ring protein C-terminal; TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) YP_004340223.1 COGs: COG1677 Flagellar hook-basal body protein; HAMAP: Flagellar hook-basal body complex protein FliE; InterPro IPR001624; KEGG: saf:SULAZ_1345 flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE; SPTR: Flagellar hook-basal body complex protein fliE; TIGRFAM: Flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE YP_004340224.1 COGs: COG1558 Flagellar basal body rod protein; InterPro IPR006299; IPR001444; IPR010930; KEGG: ddf:DEFDS_0520 flagellar basal-body rod protein FlgC; PFAM: Flagellar basal body rod protein, N-terminal; Domain of unknown function DUF1078, C-terminal; SPTR: Flagellar basal-body rod protein C; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC YP_004340225.1 COGs: COG1815 Flagellar basal body protein; InterPro IPR006300; IPR001444; KEGG: tme:Tmel_1124 flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal; SPTR: Flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgB YP_004340226.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR003607; IPR000160; IPR003018; IPR006674; KEGG: sua:Saut_1723 diguanylate cyclase and metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; GAF; Diguanylate cyclase, predicted; SMART: Metal-dependent phosphohydrolase, HD domain; Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase and metal dependent phosphohydrolase; PFAM: HD domain; GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004340227.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: geo:Geob_3034 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004340228.1 COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein; InterPro IPR007197; KEGG: tye:THEYE_A0358 radical SAM domain protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein YP_004340229.1 COGs: COG1485 ATPase; InterPro IPR005654; KEGG: dap:Dacet_1159 AFG1-family ATPase; PFAM: ATPase, AFG1-like; SPTR: AFG1-family ATPase; PFAM: AFG1-like ATPase YP_004340230.1 COGs: COG0546 phosphatase; InterPro IPR006439; IPR005834; KEGG: nam:NAMH_0926 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: Phosphoglycolate phosphatase; SPTR: Phosphoglycolate phosphatase, bacterial; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase; 2-phosphoglycolate phosphatase, prokaryotic YP_004340231.1 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR020841; IPR017568; IPR014030; IPR014031; KEGG: tye:THEYE_A0103 beta-ketoacyl-acyl carrier protein synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SMART: Polyketide synthase, beta-ketoacyl synthase domain; SPTR: Beta-ketoacyl-acyl carrier protein synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II YP_004340232.1 COGs: COG0236 Acyl carrier protein; HAMAP: Acyl carrier protein (ACP); InterPro IPR020806; IPR003231; IPR006163; KEGG: pmu:PM1917 acyl carrier protein; PFAM: Phosphopantetheine-binding; SMART: Polyketide synthase, phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_004340233.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020842; IPR011284; IPR002198; KEGG: cac:CA_C3574 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase YP_004340234.1 COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR020801; IPR004410; IPR014043; KEGG: ddf:DEFDS_0151 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase; PRIAM: [Acyl-carrier-protein] S-malonyltransferase; SMART: Polyketide synthase, acyl transferase domain; SPTR: [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_004340235.1 COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR017569; IPR004136; KEGG: thx:Thet_1175 enoyl-(acyl-carrier-protein) reductase II; PFAM: 2-nitropropane dioxygenase, NPD; SPTR: 2-nitropropane dioxygenase, NPD; TIGRFAM: Enoyl-(acyl-carrier-protein) reductase II, putative; PFAM: 2-nitropropane dioxygenase; TIGRFAM: putative enoyl-(acyl-carrier-protein) reductase II YP_004340236.1 COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655; IPR013751; IPR013747; KEGG: gem:GM21_1154 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 3 1; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_004340237.1 COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; HAMAP: Phospholipid biosynthesis protein, PlsX-like; InterPro IPR012281; IPR003664; KEGG: pth:PTH_1746 putative glycerol-3-phosphate acyltransferase PlsX; PFAM: Fatty acid synthesis PlsX protein; SPTR: Phosphate acyltransferase; TIGRFAM: Phospholipid biosynthesis protein, PlsX-like; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX YP_004340238.1 COGs: COG0333 Ribosomal protein L32; HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: hor:Hore_10230 ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_004340239.1 COGs: COG0105 Nucleoside diphosphate kinase; HAMAP: Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: ddf:DEFDS_0089 nucleoside-diphosphate kinase; PFAM: Nucleoside diphosphate kinase; PRIAM: Nucleoside-diphosphate kinase; SMART: Nucleoside diphosphate kinase; SPTR: Nucleoside diphosphate kinase 2; PFAM: Nucleoside diphosphate kinase YP_004340240.1 COGs: COG2331 conserved hypothetical protein; InterPro IPR013429; KEGG: dbr:Deba_1484 regulatory protein, FmdB family; PFAM: Regulatory protein, FmdB, putative; SMART: Regulatory protein, FmdB, putative; SPTR: Regulatory protein, FmdB family; TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family YP_004340241.1 COGs: COG1872 conserved hypothetical protein; HAMAP: Protein of unknown function DUF167; InterPro IPR003746; KEGG: lic:LIC12068 hypothetical protein; PFAM: Protein of unknown function DUF167; SPTR: UPF0235 protein NPH_5745; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: conserved hypothetical protein TIGR00251 YP_004340242.1 KEGG: msy:MS53_0427 DHH subfamily 1 protein; SPTR: Putative DHH subfamily 1 protein YP_004340243.1 COGs: COG2206 HD-GYP domain; InterPro IPR006674; IPR000160; IPR003607; KEGG: dak:DaAHT2_2075 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; Diguanylate cyclase, predicted; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; PFAM: HD domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004340244.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744; KEGG: dth:DICTH_0582 YitW; PFAM: Domain of unknown function DUF59; SPTR: YitW; PFAM: Domain of unknown function DUF59 YP_004340245.1 COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR002586; IPR001450; KEGG: dba:Dbac_2276 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; 4Fe-4S binding domain; SPTR: Iron-sulfur cluster-binding/ATPase domain protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004340246.1 COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR002586; IPR001450; KEGG: tte:TTE1892 MinD family protein; PFAM: Cobyrinic acid a,c-diamide synthase; 4Fe-4S binding domain; SPTR: MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004340247.1 COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: mmp:MMP0451 hypothetical protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; SPTR: Putative uncharacterized protein; PFAM: Dinitrogenase iron-molybdenum cofactor YP_004340248.1 KEGG: hor:Hore_18310 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340249.1 COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR020046; IPR020047; IPR001098; IPR002421; IPR 008918; IPR018320; KEGG: cow:Calow_1220 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; DNA-directed DNA polymerase, family A, palm domain; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase 1; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I YP_004340250.1 COGs: COG0407 Uroporphyrinogen-III decarboxylase; InterPro IPR000257; KEGG: tye:THEYE_A0806 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: Uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase YP_004340251.1 COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); InterPro IPR001015; KEGG: sdl:Sdel_1670 ferrochelatase; PFAM: Ferrochelatase; PRIAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: Ferrochelatase; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase YP_004340252.1 COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR022687; IPR001367; IPR022689; KEGG: dal:Dalk_2732 iron (metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor; Iron dependent repressor, N-terminal; SMART: Iron dependent repressor, diptheria toxin type; SPTR: Iron (Metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain YP_004340253.1 COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: slt:Slit_1655 protein of unknown function DUF195; PFAM: DNA recombination RmuC; SPTR: RmuC domain protein; PFAM: Exonuclease VII, large subunit; RmuC family YP_004340254.1 COGs: COG0011 conserved hypothetical protein; InterPro IPR002767; KEGG: pmx:PERMA_1600 hypothetical protein; PFAM: Protein of unknown function DUF77; SPTR: Putative uncharacterized protein; TIGRFAM: Protein of unknown function DUF77; PFAM: Domain of unknown function DUF77; TIGRFAM: uncharacterized protein, MTH1187 family YP_004340255.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; IPR011904; KEGG: chy:CHY_0659 acetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetate--CoA ligase; SPTR: Acetyl-coenzyme A synthetase; TIGRFAM: Acetate-CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase YP_004340256.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002825; KEGG: pmx:PERMA_1711 periplasmic serine protease; PFAM: Peptidase S49, serine-peptidase prokaryotes; SPTR: Periplasmic serine protease; PFAM: Serine dehydrogenase proteinase YP_004340257.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR013587; IPR003660; IPR004089; KEGG: dap:Dacet_1501 methyl-accepting chemotaxis sensory transducer; PFAM: Nitrate/nitrite sensing protein; HAMP linker domain; Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: Methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; Nitrate and nitrite sensing; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004340258.1 COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: drm:Dred_2177 basic membrane lipoprotein; PFAM: Basic membrane lipoprotein; SPTR: Basic membrane lipoprotein; PFAM: Basic membrane protein YP_004340259.1 COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; InterPro IPR003439; IPR003593; KEGG: ssm:Spirs_2768 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter YP_004340260.1 COGs: COG4603 ABC-type uncharacterized transport system permease component; InterPro IPR001851; KEGG: tjr:TherJR_0878 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component YP_004340261.1 COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: drm:Dred_2174 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component YP_004340262.1 COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; InterPro IPR010656; IPR011853; KEGG: ddf:DEFDS_1399 TRAP-type transporter permease component; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP-type transport system, permease component; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein YP_004340263.1 COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: ddf:DEFDS_1400 TRAP-type transporter substrate-binding protein; SPTR: TRAP-type transport system, substrate-binding protein; TIGRFAM: TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family YP_004340264.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sul:SYO3AOP1_1122 transposase mutator type; PFAM: Transposase, mutator type; SPTR: Transposase mutator type; PFAM: Transposase, Mutator family YP_004340265.1 COGs: COG0328 Ribonuclease HI; InterPro IPR002156; KEGG: toc:Toce_0936 ribonuclease H; PFAM: Ribonuclease H domain; SPTR: Ribonuclease H; PFAM: RNase H YP_004340266.1 COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: ddf:DEFDS_1484 hypothetical protein; PFAM: Protein of unknown function DUF164; SPTR: Putative uncharacterized protein; PFAM: Putative zinc ribbon domain YP_004340267.1 COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: apr:Apre_1133 protein of unknown function DUF34; PFAM: NGG1p interacting factor 3, NIF3; SPTR: NIF3 family protein; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family YP_004340268.1 KEGG: bha:BH0827 fructose 1-phosphate kinase YP_004340269.1 InterPro IPR002197; KEGG: csc:Csac_2704 hypothetical protein; PFAM: Helix-turn-helix, Fis-type; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, Fis family YP_004340270.1 COGs: COG1484 DNA replication protein; InterPro IPR002611; IPR003593; KEGG: csc:Csac_2606 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: IstB domain protein ATP-binding protein; PFAM: IstB-like ATP binding protein YP_004340271.1 COGs: COG5421 Transposase; InterPro IPR002559; KEGG: amc:MADE_02905 transposase, IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain YP_004340272.1 KEGG: tet:TTHERM_00527240 hypothetical protein YP_004340273.1 COGs: COG2206 HD-GYP domain; InterPro IPR006674; IPR003607; KEGG: dth:DICTH_1642 GGDEF domain; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Ggdef domain; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004340274.1 KEGG: bha:BH0827 fructose 1-phosphate kinase YP_004340275.1 InterPro IPR002197; IPR001584; KEGG: csc:Csac_0597 hypothetical protein; PFAM: Integrase, catalytic core; Helix-turn-helix, Fis-type; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, Fis family; Integrase core domain YP_004340276.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865; IPR000994; KEGG: bvu:BVU_2073 Xaa-Pro aminopeptidase; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; PRIAM: Xaa-Pro aminopeptidase; SPTR: Putative uncharacterized protein; PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase family M24 YP_004340277.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: tna:CTN_1425 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004340278.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: trq:TRQ2_1667 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004340279.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: kol:Kole_2048 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004340280.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003439; IPR013563; IPR003593; IPR010066; KEGG: pmo:Pmob_1784 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004340281.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003439; IPR013563; IPR003593; IPR010066; KEGG: kol:Kole_2050 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004340282.1 HAMAP: Ribosomal protein S20; InterPro IPR002583; KEGG: dal:Dalk_1195 ribosomal protein S20; PFAM: Ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: Ribosomal protein S20; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20 YP_004340283.1 KEGG: bha:BH0827 fructose 1-phosphate kinase YP_004340284.1 InterPro IPR002197; IPR001584; KEGG: csc:Csac_1446 hypothetical protein; PFAM: Integrase, catalytic core; Helix-turn-helix, Fis-type; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, Fis family; Integrase core domain YP_004340285.1 COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: Chaperonin Cpn10; InterPro IPR020818; KEGG: dsa:Desal_0770 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10; SPTR: 10 kDa chaperonin 1; PFAM: Chaperonin 10 Kd subunit YP_004340286.1 COGs: COG0459 Chaperonin GroEL (HSP60 family); HAMAP: Chaperonin Cpn60; InterPro IPR002423; IPR001844; KEGG: ddf:DEFDS_0240 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: Chaperonin Cpn60; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_004340287.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: tye:THEYE_A1109 metallo-beta-lactamase family protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily YP_004340288.1 COGs: COG2440 Ferredoxin-like protein; KEGG: mta:Moth_0061 ferredoxin; SPTR: Ferredoxin YP_004340289.1 COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR002938; IPR006076; KEGG: bse:Bsel_1193 geranylgeranyl reductase; PFAM: Monooxygenase, FAD-binding; FAD dependent oxidoreductase; SPTR: Geranylgeranyl reductase; PFAM: Thi4 family; FAD dependent oxidoreductase YP_004340290.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730; IPR014731; KEGG: chy:CHY_2477 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain YP_004340291.1 COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: clj:CLJU_c40230 putative electron transfer flavoprotein subunit beta; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Predicted electron transfer flavoprotein beta subunit; PFAM: Electron transfer flavoprotein domain YP_004340292.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: gbm:Gbem_0467 methyl-accepting chemotaxis sensory transducer lipoprotein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: Methyl-accepting chemotaxis sensory transducer; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004340293.1 InterPro IPR005144; KEGG: zpr:ZPR_3407 putative nuclease; PFAM: ATP-cone; SPTR: Putative uncharacterized protein; PFAM: Restriction endonuclease YP_004340294.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732; IPR014026; IPR014027; IPR017476; KEGG: nis:NIS_0741 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: UDP-glucose 6-dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004340295.1 InterPro IPR006674; KEGG: chy:CHY_0135 HDIG domain-containing protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SPTR: HDIG domain protein; PFAM: HD domain YP_004340296.1 COGs: COG1160 GTPase; HAMAP: GTP-binding, EngA; InterPro IPR002917; IPR016484; IPR005225; KEGG: swo:Swol_1325 hypothetical protein; PFAM: GTP-binding protein, HSR1-related; SPTR: Putative uncharacterized protein; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain YP_004340297.1 COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265; IPR003651; IPR005759; KEGG: ctc:CTC00355 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SPTR: Endonuclease III; TIGRFAM: Endonuclease III/Nth; PFAM: HhH-GPD superfamily base excision DNA repair protein; Iron-sulfur binding domain of endonuclease III; Helix-hairpin-helix motif; TIGRFAM: endonuclease III YP_004340298.1 InterPro IPR005358; KEGG: nam:NAMH_1221 hypothetical protein; PFAM: Uncharacterised protein family UPF0153; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153) YP_004340299.1 KEGG: tva:TVAG_053070 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340300.1 COGs: COG0254 Ribosomal protein L31; HAMAP: Ribosomal protein L31; InterPro IPR002150; KEGG: sat:SYN_01796 50S ribosomal protein L31P; PFAM: Ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: Ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_004340301.1 InterPro IPR007922; KEGG: tle:Tlet_1057 hypothetical protein; PFAM: Protein of unknown function DUF721/UPF0232; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF721) YP_004340302.1 KEGG: bfu:BC1G_10022 hypothetical protein; SPTR: NeuroD1 YP_004340303.1 COGs: COG4105 DNA uptake lipoprotein; InterPro IPR013105; IPR019734; IPR017689; KEGG: gur:Gura_4007 DNA uptake lipoprotein-like protein; PFAM: Tetratricopeptide TPR2; SPTR: DNA uptake lipoprotein-like protein; TIGRFAM: Outer membrane assembly lipoprotein YfiO; PFAM: Tetratricopeptide repeat; TIGRFAM: outer membrane assembly lipoprotein YfiO YP_004340304.1 InterPro IPR002068; KEGG: glo:Glov_2790 heat shock protein HSP20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family YP_004340305.1 COGs: COG0466 ATP-dependent Lon protease; InterProIPR003111; IPR003959; IPR008269; IPR003593; IPR 004815; KEGG: gur:Gura_0691 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; PRIAM: Endopeptidase La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; SPTR: ATP-dependent protease La; TIGRFAM: Peptidase S16, ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_004340306.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: ddf:DEFDS_0471 lipoprotein-releasing system permease protein; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family YP_004340307.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439; IPR003593; KEGG: pmx:PERMA_1738 lipoprotein-releasing system ATP-binding protein LolD; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Lipoprotein-releasing system ATP-binding protein LolD; PFAM: ABC transporter YP_004340308.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; IPR000184; IPR016474; KEGG: ddf:DEFDS_0104 hypothetical protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Putative uncharacterized protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein YP_004340309.1 InterPro IPR005632; KEGG: glo:Glov_0761 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like) YP_004340310.1 COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro IPR020573; IPR001451; IPR007691; KEGG: tye:THEYE_A0092 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_004340311.1 COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; HAMAP: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; InterPro IPR013114; IPR010084; KEGG: ddf:DEFDS_0107 3R-hydroxymyristoyl ACP dehydrase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ YP_004340312.1 COGs: COG1043 Acyl-(acyl carrier protein); HAMAP:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; InterPro IPR001451; IPR010137; KEGG: dba:Dbac_3377 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa mineO-acyltransferase; PFAM: Bacterial transferase hexapeptide repeat; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: UDP-N-acetylglucosamine acyltransferase; TIGRFAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YP_004340313.1 COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: ddf:DEFDS_1723 lipid A disaccharide synthetase; PFAM: Glycosyl transferase, family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Lipid-A-disaccharide synthase; TIGRFAM: Glycosyl transferase, family 19; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase YP_004340314.1 COGs: COG2121 conserved hypothetical protein; InterPro IPR007172; IPR002123; KEGG: fnu:FN1269 lipoprotein; PFAM: Domain of unknown function DUF374; Phospholipid/glycerol acyltransferase; SPTR: Lipoprotein; PFAM: Domain of unknown function (DUF374) YP_004340315.1 COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; InterPro IPR003758; KEGG: dap:Dacet_0098 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase YP_004340316.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140; IPR003439; IPR003593; KEGG: dde:Dde_1960 lipid A export ATP-binding/permease protein MsbA; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Lipid A export ATP-binding/permease protein MsbA; PFAM: ABC transporter transmembrane region; ABC transporter YP_004340317.1 COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: cje:Cj0707 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; SPTR: 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YP_004340318.1 COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR003711; IPR011545; IPR001650; IPR005118; IPR 014001; IPR004576; KEGG: dtu:Dtur_1511 transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; Helicase, C-terminal; Transcription-repair-coupling factor domain; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: Transcription-repair coupling factor; TIGRFAM: Transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_004340319.1 COGs: COG0797 Lipoprotein; InterPro IPR009009; IPR007730; IPR012997; KEGG: nis:NIS_0776 hypothetical protein; PFAM: Barwin-related endoglucanase; Sporulation-related domain; SPTR: Putative uncharacterized protein; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Sporulation related domain; TIGRFAM: rare lipoprotein A YP_004340320.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: pca:Pcar_0644 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_004340321.1 COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR013767; IPR003661; IPR003594; IPR000014; KEGG: saf:SULAZ_1572 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004340322.1 COGs: COG1729 conserved hypothetical protein; InterPro IPR001440; IPR019734; KEGG: bbz:BbuZS7_0195 TPR domain protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004340323.1 COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR001085; KEGG: ddf:DEFDS_0485 glycine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: Serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_004340324.1 COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500; IPR004785; KEGG: ehi:EHI_176150 ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR: Ribose 5-phosphate isomerase, putative; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_004340325.1 InterPro IPR013655; IPR000014; KEGG: saf:SULAZ_0401 PAS fold family protein; PFAM: PAS fold-3; SMART: PAS; SPTR: PAS fold family protein; PFAM: PAS fold YP_004340326.1 InterPro IPR003018; KEGG: aae:aq_340 hypothetical protein; PFAM: GAF; SMART: GAF; SPTR: Putative uncharacterized protein; PFAM: GAF domain YP_004340327.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160; IPR001633; KEGG: ipo:Ilyop_2227 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SPTR: Preprotein translocase ATPase subunit; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004340328.1 COGs: COG0650 Formate hydrogenlyase subunit 4; InterPro IPR001694; KEGG: abi:Aboo_0778 formate hydrogenlyase subunit 4 (HycD); PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H; SPTR: Putative uncharacterized protein; PFAM: NADH dehydrogenase YP_004340329.1 COGs: COG4237 Hydrogenase 4 membrane component (E); KEGG: hya:HY04AAS1_1305 hydrogenase 4 membrane component (E); SPTR: Putative uncharacterized protein YP_004340330.1 COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750; KEGG: pto:PTO0827 hydrogenase 4 subunit F; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: Formate hydrogenlyase subunit 3; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains YP_004340331.1 COGs: COG3261 Ni Fe-hydrogenase III large subunit; InterPro IPR001135; KEGG: tvo:TVN1456 Ni,Fe-hydrogenase III large subunit; PFAM: NADH-quinone oxidoreductase, subunit D; SPTR: Formate hydrogenlyase subunit 3; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit YP_004340332.1 COGs: COG3260 Ni Fe-hydrogenase III small subunit; InterPro IPR006137; KEGG: mac:MA4373 hydrogenase-3, subunit G (HycG homolog); PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; SPTR: NADH ubiquinone oxidoreductase, 20 Kd subunit family YP_004340333.1 COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750; KEGG: abi:Aboo_0773 NADH/ubiquinone/plastoquinone (complex I); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; SPTR: NADH-Ubiquinone/plastoquinone (Complex I), domain protein; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains YP_004340334.1 COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR006059; KEGG: ddf:DEFDS_0825 molybdate ABC transporter substrate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Molybdate ABC transporter, substrate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein YP_004340335.1 COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR006059; KEGG: ddf:DEFDS_0825 molybdate ABC transporter substrate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Molybdate ABC transporter, substrate-binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein YP_004340336.1 COGs: COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; InterPro IPR003203; KEGG: ddf:DEFDS_2051 adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase; PRIAM: Adenosylcobinamide-phosphate guanylyltransferase; SPTR: Adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase YP_004340337.1 COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR003402; IPR002478; KEGG: nam:NAMH_1080 methyltransferase small; PFAM: Protein of unknown function Met10; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: Methyltransferase small; PFAM: S-adenosylmethionine-dependent methyltransferase YP_004340338.1 COGs: COG0068 Hydrogenase maturation factor; InterPro IPR001792; IPR011125; IPR006070; IPR004421; KEGG: cth:Cthe_3016 (NiFe) hydrogenase maturation protein HypF; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type; SPTR: (NiFe) hydrogenase maturation protein HypF; TIGRFAM: Carbamoyltransferase, HypF-type; PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF YP_004340339.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154; IPR013149; IPR020843; IPR014189; KEGG: ddf:DEFDS_2015 alcohol dehydrogenase zinc-binding; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SMART: Polyketide synthase, enoylreductase; SPTR: Alcohol dehydrogenase, zinc-binding; TIGRFAM: Quinone oxidoreductase putative, PIG3; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: putative NAD(P)H quinone oxidoreductase, PIG3 family YP_004340340.1 COGs: COG0298 Hydrogenase maturation factor; InterPro IPR001109; KEGG: adg:Adeg_2008 hydrogenase assembly chaperone HypC/HupF; PFAM: Hydrogenase expression/formation protein, HupF/HypC; SPTR: Hydrogenase assembly chaperone HypC/HupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF YP_004340341.1 COGs: COG0409 Hydrogenase maturation factor; InterPro IPR002780; KEGG: tsi:TSIB_1434 Ni-Fe hydrogenase maturation protein HypD; PFAM: Hydrogenase formation HypD protein; SPTR: Ni-Fe hydrogenase maturation protein HypD; TIGRFAM: Hydrogenase formation HypD protein; PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD YP_004340342.1 COGs: COG0309 Hydrogenase maturation factor; InterPro IPR000728; IPR010918; IPR011854; KEGG: saf:SULAZ_0752 hydrogenase expression/formation protein HypE; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; SPTR: Hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE YP_004340343.1 COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: cte:CT1965 hypothetical protein; PFAM: Divalent ion symporter; SPTR: Membrane protein, putative; PFAM: Citrate transporter YP_004340344.1 COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR001440; IPR019734; KEGG: cyp:PCC8801_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat YP_004340345.1 COGs: COG1639 signal transduction protein; InterPro IPR013976; IPR006675; KEGG: slp:Slip_1776 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG YP_004340346.1 COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR022641; IPR022642; IPR000780; KEGG: tte:TTE1037 methylase of chemotaxis methyl-accepting proteins; PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; SPTR: MCP methyltransferase, CheR-type; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain YP_004340347.1 KEGG: cnb:CNBC6120 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340348.1 COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: nam:NAMH_1643 hypothetical protein; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; SPTR: Putative uncharacterized protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2 YP_004340349.1 InterPro IPR006016; KEGG: pmx:PERMA_1283 universal stress protein family protein; PFAM: UspA; SPTR: Universal stress protein family protein; PFAM: Universal stress protein family YP_004340350.1 COGs: COG0465 ATP-dependent Zn protease; InterProIPR011546; IPR003959; IPR000642; IPR003593; IPR 005936; KEGG: sfu:Sfum_3197 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent zinc metalloprotease FtsH; TIGRFAM: Peptidase M41, FtsH; PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_004340351.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391; KEGG: hna:Hneap_2197 outer membrane assembly lipoprotein YfgL; SPTR: Putative serine/threonine protein kinase with quinoprotein alcohol dehydrogenase domain YP_004340352.1 COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR004013; IPR003141; KEGG: mpd:MCP_2619 putative phosphatase, PHP family; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: Putative phosphatase, PHP family; PFAM: PHP domain YP_004340353.1 COGs: COG0539 Ribosomal protein S1; InterPro IPR003029; IPR022967; KEGG: dbr:Deba_2714 ribosomal protein S1; PFAM: Ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1; SPTR: Ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_004340354.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142; IPR004635; KEGG: tye:THEYE_A1771 signal peptide peptidase SppA, 36K type; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 36K type; TIGRFAM: Peptidase S49, SppA; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type YP_004340355.1 KEGG: cal:CaO19.1196 Serine/threonine protein kinase; SPTR: Putative uncharacterized protein YP_004340356.1 KEGG: bfo:BRAFLDRAFT_118609 hypothetical protein; SPTR: Neurogenic locus Notch protein YP_004340357.1 KEGG: ton:TON_0906 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340358.1 COGs: COG0003 ATPase involved in chromosome partitioning; KEGG: tko:TK0994 arsenical pump-driving ATPase; PRIAM: Arsenite-transporting ATPase; SPTR: Arsenical pump-driving ATPase; PFAM: Anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase (arsA) YP_004340359.1 KEGG: ton:TON_0909 hypothetical membrane protein, conserved; SPTR: Hypothetical membrane protein, conserved YP_004340360.1 KEGG: hmg:100198407 hypothetical protein LOC100198407; SPTR: Uncharacterized protein R869 YP_004340361.1 InterPro IPR002110; KEGG: aas:Aasi_1435 hypothetical protein; PFAM: Ankyrin repeat; SPTR: Putative uncharacterized protein; PFAM: Ankyrin repeat YP_004340362.1 COGs: COG0597 Lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: saf:SULAZ_0201 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; SPTR: Lipoprotein signal peptidase; TIGRFAM: Peptidase A8, signal peptidase II; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_004340363.1 COGs: COG0203 Ribosomal protein L17; HAMAP: Ribosomal protein L17; InterPro IPR000456; KEGG: sit:TM1040_0280 50S ribosomal protein L17; PFAM: Ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_004340364.1 COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterProIPR011261; IPR011262; IPR011260; IPR011263; IPR 011773; KEGG: aca:ACP_1423 DNA-directed RNA polymerase subunit alpha; PFAM: DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type YP_004340365.1 COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR001912; IPR002942; IPR005709; KEGG: clj:CLJU_c40780 30S ribosomal protein S4; PFAM: RNA-binding S4; Ribosomal protein S4/S9, N-terminal; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_004340366.1 COGs: COG0100 Ribosomal protein S11; InterPro IPR001971; IPR019981; KEGG: dol:Dole_0731 ribosomal protein S11; PFAM: Ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11 YP_004340367.1 COGs: COG0099 Ribosomal protein S13; InterPro IPR001892; IPR019980; KEGG: tmt:Tmath_1908 30S ribosomal protein S13; PFAM: Ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13 YP_004340368.1 HAMAP: Ribosomal protein L36; InterPro IPR000473; KEGG: dds:Ddes_0682 50S ribosomal protein L36; PFAM: Ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: Ribosomal protein L36; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_004340369.1 COGs: COG0361 Translation initiation factor 1 (IF-1); HAMAP: Translation initiation factor IF-1; InterPro IPR006196; IPR022967; IPR004368; KEGG: sun:SUN_2342 translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type; SMART: RNA-binding domain, S1; SPTR: Translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1 YP_004340370.1 COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994; IPR002467; KEGG: hor:Hore_01380 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_004340371.1 COGs: COG0563 Adenylate kinase and related kinase; HAMAP: Adenylate kinase; InterPro IPR000850; IPR007862; IPR006259; KEGG: apo:Arcpr_1334 adenylate kinase; PFAM: Adenylate kinase; Adenylate kinase, active site lid domain; SPTR: Adenylate kinase; TIGRFAM: Adenylate kinase, subfamily; PFAM: Adenylate kinase, active site lid; Adenylate kinase; TIGRFAM: adenylate kinases YP_004340372.1 COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: dat:HRM2_36060 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase subunit secY; TIGRFAM: SecY protein; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit YP_004340373.1 COGs: COG0200 Ribosomal protein L15; InterPro IPR005749; KEGG: tal:Thal_0751 ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_004340374.1 COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR016082; IPR005996; KEGG: dae:Dtox_0304 ribosomal protein L30; PFAM: Ribosomal protein L30, ferredoxin-like fold domain; SPTR: 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle YP_004340375.1 COGs: COG0098 Ribosomal protein S5; InterPro IPR013810; IPR005324; IPR005712; KEGG: toc:Toce_0136 SSU ribosomal protein S5P; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type YP_004340376.1 COGs: COG0256 Ribosomal protein L18; InterPro IPR005484; IPR004389; KEGG: toc:Toce_0135 LSU ribosomal protein L18P; PFAM: Ribosomal protein L18/L5; SPTR: 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_004340377.1 COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR020040; IPR019906; KEGG: cyc:PCC7424_3717 50S ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: Ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type YP_004340378.1 COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: gur:Gura_1080 30S ribosomal protein S8; PFAM: Ribosomal protein S8; SPTR: 30S ribosomal protein S8; PFAM: Ribosomal protein S8 YP_004340379.1 COGs: COG0199 Ribosomal protein S14; InterPro IPR001209; KEGG: ttr:Tter_0728 ribosomal protein S14; PFAM: Ribosomal protein S14; SPTR: 30S ribosomal protein S14 type Z; PFAM: Ribosomal protein S14p/S29e YP_004340380.1 COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: gur:Gura_1078 50S ribosomal protein L5; PFAM: Ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5 YP_004340381.1 COGs: COG0198 Ribosomal protein L24; InterPro IPR005824; IPR003256; KEGG: pth:PTH_0331 50S ribosomal protein L24; PFAM: KOW; SMART: KOW; SPTR: 50S ribosomal protein L24; TIGRFAM: Ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_004340382.1 COGs: COG0093 Ribosomal protein L14; InterPro IPR000218; IPR005745; KEGG: ppd:Ppro_0690 50S ribosomal protein L14; PFAM: Ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_004340383.1 COGs: COG0186 Ribosomal protein S17; InterPro IPR000266; IPR019984; KEGG: dap:Dacet_0381 30S 30S ribosomal protein S17; PFAM: Ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17 YP_004340384.1 InterPro IPR001854; KEGG: tal:Thal_0610 ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_004340385.1 COGs: COG0197 Ribosomal protein L16/L10E; HAMAP: Ribosomal protein L16; InterPro IPR016180; IPR000114; KEGG: rmr:Rmar_0849 ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_004340386.1 COGs: COG0092 Ribosomal protein S3; InterProIPR008282; IPR004044; IPR001351; IPR004087; IPR 005704; KEGG: tye:THEYE_A1440 ribosomal protein S3; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; SMART: K Homology; SPTR: 30S ribosomal protein S3; TIGRFAM: Ribosomal protein S3, bacterial; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type YP_004340387.1 COGs: COG0091 Ribosomal protein L22; InterPro IPR001063; IPR005727; KEGG: xop:PXO_04516 50S ribosomal protein L22; PFAM: Ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type YP_004340388.1 COGs: COG0185 Ribosomal protein S19; InterPro IPR002222; IPR005732; KEGG: tye:THEYE_A1442 ribosomal protein S19; PFAM: Ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle YP_004340389.1 COGs: COG0090 Ribosomal protein L2; InterPro IPR022666; IPR022669; IPR005880; KEGG: ddf:DEFDS_1769 50S ribosomal protein L2; PFAM: Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain; SPTR: 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_004340390.1 COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: pth:PTH_0322 50S ribosomal protein L23; PFAM: Ribosomal protein L25/L23; SPTR: 50S ribosomal protein L23; PFAM: Ribosomal protein L23 YP_004340391.1 COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: tmt:Tmath_1932 ribosomal protein L4/L1e; PFAM: Ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1 family YP_004340392.1 COGs: COG0087 Ribosomal protein L3; InterPro IPR000597; IPR019927; KEGG: fno:Fnod_1138 50S ribosomal protein L3; PFAM: Ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_004340393.1 COGs: COG0051 Ribosomal protein S10; HAMAP: Ribosomal protein S10 subgroup; InterPro IPR001848; IPR005731; KEGG: bba:Bd2978 30S ribosomal protein S10; PFAM: Ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: Ribosomal protein S10 subgroup; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_004340394.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795; IPR004161; IPR004160; IPR004541; IPR 005225; KEGG: cow:Calow_0656 translation elongation factor tu; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; SPTR: Elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_004340395.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795; IPR004161; IPR005517; IPR000640; IPR 004540; IPR005225; KEGG: ddf:DEFDS_1775 translation elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor G 2; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004340396.1 COGs: COG0049 Ribosomal protein S7; InterPro IPR000235; IPR005717; KEGG: tpd:Teth39_0370 30S ribosomal protein S7; PFAM: Ribosomal protein S7; SPTR: Ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle YP_004340397.1 COGs: COG0048 Ribosomal protein S12; InterPro IPR006032; IPR005679; KEGG: hor:Hore_01120 ribosomal protein S12; PFAM: Ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacteria; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle YP_004340398.1 COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; InterProIPR007080; IPR000722; IPR007066; IPR007083; IPR 007081; IPR006592; IPR012754; IPR012756; KEGG: nis:NIS_0269 DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; DNA-directed RNA polymerase, subunit beta''; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta'' subunit; DNA-directed RNA polymerase, beta' subunit, predominant form YP_004340399.1 COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; InterProIPR007644; IPR007642; IPR007645; IPR019462; IPR 007120; IPR007641; IPR010243; KEGG: gsu:GSU2863 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit YP_004340400.1 COGs: COG0222 Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; InterPro IPR013823; IPR000206; KEGG: ddf:DEFDS_1780 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12 YP_004340401.1 COGs: COG0244 Ribosomal protein L10; HAMAP: Ribosomal protein L10; InterPro IPR001790; IPR022973; KEGG: cth:Cthe_2722 50S ribosomal protein L10P; PFAM: Ribosomal protein L10/acidic P0; SPTR: 50S ribosomal protein L10; PFAM: Ribosomal protein L10 YP_004340402.1 COGs: COG0081 Ribosomal protein L1; InterPro IPR002143; IPR005878; KEGG: ddf:DEFDS_1782 50S ribosomal protein L1; PFAM: Ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast YP_004340403.1 COGs: COG0080 Ribosomal protein L11; InterPro IPR020784; IPR020783; IPR000911; IPR006519; KEGG: tna:CTN_0219 50S ribosomal protein L11; PFAM: Ribosomal protein L11, N-terminal domain; Ribosomal protein L11, C-terminal domain; SMART: Ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_004340404.1 COGs: COG0250 Transcription antiterminator; InterPro IPR006645; IPR005824; IPR001062; KEGG: ttr:Tter_1824 NusG antitermination factor; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; SPTR: Transcription antitermination protein nusG; TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG YP_004340405.1 InterPro IPR001901; IPR005807; KEGG: aco:Amico_0313 preprotein translocase, SecE subunit; PFAM: Protein SecE/Sec61-gamma protein; SPTR: Preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex; manually curated; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_004340406.1 HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: pmx:PERMA_1181 50S ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_004340407.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795; IPR004161; IPR004160; IPR004541; IPR 005225; KEGG: cow:Calow_0656 translation elongation factor tu; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; SPTR: Elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_004340408.1 KEGG: bha:BH0827 fructose 1-phosphate kinase YP_004340409.1 InterPro IPR002197; IPR001584; KEGG: csc:Csac_0950 hypothetical protein; PFAM: Integrase, catalytic core; Helix-turn-helix, Fis-type; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, Fis family; Integrase core domain YP_004340410.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: Queuosine biosynthesis protein; InterPro IPR003699; KEGG: pmx:PERMA_1408 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_004340411.1 COGs: COG0219 rRNA methylase (SpoU class); InterPro IPR001537; KEGG: ctc:CTC00367 rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: rRNA methyltransferase; PFAM: SpoU rRNA Methylase family; TIGRFAM: rRNA methylase, putative, group 2 YP_004340412.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: dap:Dacet_1550 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII; PRIAM: Aspartate transaminase; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II YP_004340413.1 COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; InterPro IPR010656; IPR011853; KEGG: ddf:DEFDS_1846 TRAP-type transporter permease component; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP-type transport system, permease component; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: Domain of unknown function (DUF3394); DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein YP_004340414.1 COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: ddf:DEFDS_1847 TRAP-type transporter substrate-binding protein; SPTR: TRAP-type transport system, substrate-binding protein; TIGRFAM: TRAP transporter solute receptor, TAXI family; PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family YP_004340415.1 COGs: COG2606 conserved hypothetical protein; InterPro IPR007214; KEGG: dar:Daro_0535 hypothetical protein; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; SPTR: Putative uncharacterized protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein YP_004340416.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cpc:Cpar_1802 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate 4-epimerase; SPTR: Putative udp-glucuronic acid epimerase; PFAM: NAD dependent epimerase/dehydratase family YP_004340417.1 COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004013; IPR011708; IPR004365; IPR003141; IPR 004805; KEGG: tjr:TherJR_2331 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_004340418.1 KEGG: fbc:FB2170_07145 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3108) YP_004340419.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: pfu:PF1175 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Putative uncharacterized protein; PFAM: Methyltransferase domain; Dinitrogenase iron-molybdenum cofactor YP_004340420.1 KEGG: bpe:BP3391 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340421.1 COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167; KEGG: iho:Igni_1229 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit; SPTR: FeoA family protein; PFAM: FeoA domain YP_004340422.1 COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917; IPR011619; IPR011642; IPR011640; IPR 005225; IPR003373; KEGG: tye:THEYE_A1291 ferrous iron transport protein B; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B, N-terminal; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; SPTR: Ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain YP_004340423.1 COGs: COG0328 Ribonuclease HI; InterPro IPR002156; KEGG: lpf:lpl1334 ribonuclease H; PFAM: Ribonuclease H domain; SPTR: Putative uncharacterized protein; PFAM: RNase H YP_004340424.1 COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR003781; IPR005811; IPR005810; KEGG: tal:Thal_1156 succinyl-CoA synthetase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding; PRIAM: Succinate--CoA ligase (ADP-forming); SMART: CoA-binding; SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: Succinyl-CoA ligase, alpha subunit; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit YP_004340425.1 COGs: COG0045 Succinyl-CoA synthetase beta subunit; HAMAP: Succinyl-CoA synthetase, beta subunit; InterPro IPR013650; IPR005811; IPR005809; KEGG: nam:NAMH_1231 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: Succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit YP_004340426.1 COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020616; IPR020617; IPR002155; KEGG: ddf:DEFDS_1837 acetyl-CoA C-acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: Acetyl-CoA C-acetyltransferase; TIGRFAM: Thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_004340427.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: ddf:DEFDS_1835 3-hydroxybutyryl-CoA dehydratase; PFAM: Crotonase, core; PRIAM: Enoyl-CoA hydratase; SPTR: 3-hydroxybutyryl-CoA dehydratase; PFAM: Enoyl-CoA hydratase/isomerase family YP_004340428.1 COGs: COG1469 conserved hypothetical protein; InterPro IPR003801; KEGG: taf:THA_1366 hypothetical protein; PFAM: GTP cyclohydrolase FolE2/MptA; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase folE2; TIGRFAM: GTP cyclohydrolase FolE2/MptA; PFAM: Uncharacterized ACR, COG1469; TIGRFAM: conserved hypothetical protein TIGR00294 YP_004340429.1 KEGG: nve:NEMVE_v1g113713 hypothetical protein; SPTR: Predicted protein YP_004340430.1 COGs: COG0501 Zn-dependent protease with chaperone function; HAMAP: Peptidase M48, protease HtpX, putative; InterPro IPR001915; IPR022919; KEGG: ddf:DEFDS_1995 peptidase M48 family; PFAM: Peptidase M48; SPTR: Protease HtpX homolog; PFAM: Peptidase family M48 YP_004340431.1 COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR002627; IPR018022; KEGG: pmx:PERMA_0538 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA) YP_004340432.1 COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886; IPR007698; IPR008141; KEGG: ddf:DEFDS_1172 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: Alanine dehydrogenase; SPTR: Alanine dehydrogenase; TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase YP_004340433.1 InterPro IPR004096; KEGG: mja:MJ_0739 hypothetical protein; PFAM: 4-vinyl reductase, 4VR; SPTR: Uncharacterized protein MJ0739; PFAM: V4R domain YP_004340434.1 COGs: COG3174 membrane protein; KEGG: saf:SULAZ_1521 putative Mg2+ transporter-C family protein; SPTR: Putative uncharacterized protein; PFAM: MgtC family YP_004340435.1 COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: sua:Saut_0437 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004340436.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: nis:NIS_0074 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: Putative uncharacterized protein; PFAM: Outer membrane efflux protein YP_004340437.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: nis:NIS_0075 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit YP_004340438.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: nis:NIS_0076 RND efflux transporter; PFAM: Acriflavin resistance protein; SPTR: Efflux transporter, RND superfamily; PFAM: AcrB/AcrD/AcrF family YP_004340439.1 KEGG: fpl:Ferp_1427 DNA polymerase beta domain protein region; SPTR: Putative uncharacterized protein YP_004340440.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sfu:Sfum_1990 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein YP_004340441.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: wsu:WS0768 acriflavin resistance A precursor; PFAM: Secretion protein HlyD; SPTR: ACRIFLAVIN RESISTANCE A; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004340442.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; IPR004764; KEGG: ant:Arnit_0634 hydrophobe/amphiphile efflux transporter; PFAM: Acriflavin resistance protein; SPTR: Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004340443.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545; IPR001650; IPR005580; IPR014001; KEGG: ddf:DEFDS_1798 ATP-dependent RNA helicase DEAD/DEAH box family; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent RNA helicase, DEAD/DEAH box family; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase YP_004340444.1 InterPro IPR011701; KEGG: hje:HacjB3_06825 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004340445.1 COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171; IPR004620; KEGG: ddf:DEFDS_1143 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form YP_004340446.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660; IPR003661; IPR003594; KEGG: sul:SYO3AOP1_0141 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004340447.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; IPR001867; KEGG: saf:SULAZ_0884 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004340448.1 KEGG: saf:SULAZ_0883 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340449.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; IPR004638; KEGG: sfu:Sfum_3317 EmrB/QacA family drug resistance transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_004340450.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: gur:Gura_3091 secretion protein HlyD family protein; PFAM: Secretion protein HlyD; SPTR: Secretion protein HlyD family protein; PFAM: HlyD family secretion protein YP_004340451.1 COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: mma:MM_1863 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Putative uncharacterized protein; PFAM: MarR family YP_004340452.1 COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: ddf:DEFDS_1845 hypothetical protein; PFAM: Uncharacterised protein family UPF0047; SPTR: Putative uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_004340453.1 COGs: COG0117 Pyrimidine deaminase; InterPro IPR002125; IPR002734; IPR004794; KEGG: bhy:BHWA1_02026 riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: Riboflavin biosynthesis protein RibD; TIGRFAM: Riboflavin biosynthesis protein RibD; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD YP_004340454.1 COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: tal:Thal_0638 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit YP_004340455.1 COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; Riboflavin biosynthesis protein RibBA; InterPro IPR000422; IPR000926; IPR016299; KEGG: sat:SYN_02371 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phosphate synthase; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; SPTR: GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_004340456.1 COGs: COG0054 Riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: saf:SULAZ_0150 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase 2; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004340457.1 COGs: COG0781 Transcription termination factor; HAMAP: NusB antitermination factor; InterPro IPR006027; IPR011605; KEGG: tye:THEYE_A1848 transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; SPTR: N utilization substance protein B homolog; TIGRFAM: NusB antitermination factor; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB YP_004340458.1 COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR001754; IPR014732; KEGG: emi:Emin_0730 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain; PRIAM: Orotidine-5'-phosphate decarboxylase; SMART: Orotidine 5'-phosphate decarboxylase domain; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 1 YP_004340459.1 COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR000836; IPR006273; KEGG: ddf:DEFDS_0566 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyltransferase, Thermus type; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase, Thermus family YP_004340460.1 KEGG: sbi:SORBI_03g027122 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340461.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: ddf:DEFDS_1353 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE YP_004340462.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: ddf:DEFDS_0721 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: Putative uncharacterized protein; PFAM: SNARE associated Golgi protein YP_004340463.1 COGs: COG1189 rRNA methylase; InterPro IPR002942; IPR002877; IPR004538; KEGG: tna:CTN_1159 hemolysin A precursor; PFAM: RNA-binding S4; Ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4; SPTR: Hemolysin TlyA family protein; TIGRFAM: Haemolysin A; PFAM: S4 domain; FtsJ-like methyltransferase; TIGRFAM: hemolysin TlyA family protein YP_004340464.1 COGs: COG2206 HD-GYP domain; InterPro IPR006674; IPR000160; IPR003607; KEGG: dak:DaAHT2_2075 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; Diguanylate cyclase, predicted; SMART: Metal-dependent phosphohydrolase, HD domain; Diguanylate cyclase, predicted; SPTR: Response regulator receiver protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: HD domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; uncharacterized domain HDIG YP_004340465.1 KEGG: bha:BH0827 fructose 1-phosphate kinase YP_004340466.1 InterPro IPR002197; IPR001584; KEGG: csc:Csac_2289 hypothetical protein; PFAM: Integrase, catalytic core; Helix-turn-helix, Fis-type; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, Fis family; Integrase core domain YP_004340467.1 COGs: COG2406 Protein distantly related to ferritins; InterPro IPR008331; KEGG: cpb:Cphamn1_0104 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin Dps family protein; PFAM: Ferritin-like domain YP_004340468.1 KEGG: mma:MM_3222 hypothetical protein; SPTR: Conserved protein; PFAM: Protein of unknown function (DUF3478) YP_004340469.1 COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683; IPR003736; KEGG: mbu:Mbur_1555 phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; SPTR: UPF0152-domain containing protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD YP_004340470.1 COGs: COG0541 Signal recognition particle GTPase; InterProIPR013822; IPR000897; IPR004125; IPR003593; IPR 004780; KEGG: tjr:TherJR_2051 signal recognition particle protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core; SPTR: Signal recognition particle protein; TIGRFAM: Signal recognition particle, SRP; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle-docking protein FtsY; signal recognition particle protein YP_004340471.1 COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: cac:CA_C1755 ribosomal protein S16; PFAM: Ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_004340472.1 COGs: COG1837 RNA-binding protein (contains KH domain); HAMAP: Uncharacterised protein family UPF0109, bacterial; InterPro IPR018111; IPR020627; KEGG: dap:Dacet_2280 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: KH domain YP_004340473.1 COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR016009; IPR002649; KEGG: gtn:GTNG_1054 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_004340474.1 COGs: COG0335 Ribosomal protein L19; HAMAP: Ribosomal protein L19; InterPro IPR001857; KEGG: toc:Toce_1070 LSU ribosomal protein L19P; PFAM: Ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: Ribosomal protein L19; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_004340475.1 COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: lpa:lpa_04385 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein RUMTOR_00208; manually curated; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: conserved hypothetical protein TIGR00252 YP_004340476.1 KEGG: ddf:DEFDS_2171 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340477.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR005110; IPR001453; IPR005111; IPR020817; KEGG: sat:SYN_00272 molybdopterin biosynthesis MoeA protein; PFAM: Molybdopterin binding; MoeA, N-terminal and linker domain; MoeA, C-terminal, domain IV; SMART: Molybdopterin binding; SPTR: Molybdopterin biosynthesis MoeA protein; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_004340478.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR001453; KEGG: ddf:DEFDS_0823 molybdopterin biosynthesis protein; PFAM: Molybdopterin binding; SMART: Molybdopterin binding; SPTR: Molybdopterin biosynthesis protein; PFAM: Probable molybdopterin binding domain YP_004340479.1 COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439; IPR003593; KEGG: ddf:DEFDS_2026 amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004340480.1 COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515; IPR010065; KEGG: ddf:DEFDS_2027 amino acid ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Amino acid ABC transporter, permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_004340481.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; IPR001320; KEGG: ddf:DEFDS_2028 amino acid ABC transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor; SPTR: Amino acid ABC transporter, substrate-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_004340482.1 KEGG: ddf:DEFDS_2029 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Ribosomal protein S27 YP_004340483.1 KEGG: drt:Dret_0154 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Protein of unknown function (DUF1271) YP_004340484.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: brm:Bmur_0458 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain YP_004340485.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: gur:Gura_0128 GAF sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: GAF sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004340486.1 COGs: COG0548 Acetylglutamate kinase; InterPro IPR001048; IPR004662; KEGG: ddf:DEFDS_0261 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: Acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase YP_004340487.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: tcx:Tcr_0109 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: GGDEF domain protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004340488.1 COGs: COG2985 permease; InterPro IPR006512; IPR006037; KEGG: sdl:Sdel_0018 YidE/YbjL duplication; PFAM: YidE/YbjL duplication; Regulator of K+ conductance, C-terminal; SPTR: YidE/YbjL duplication; TIGRFAM: YidE/YbjL duplication; PFAM: Predicted Permease Membrane Region; TrkA-C domain; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain YP_004340489.1 InterPro IPR011701; KEGG: tdn:Suden_1979 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004340490.1 COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107; IPR002104; KEGG: tye:THEYE_A1395 tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase xerC; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004340491.1 COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR004820; IPR011914; IPR004821; KEGG: cts:Ctha_1939 RfaE bifunctional protein; PFAM: Cytidylyltransferase; SPTR: RfaE bifunctional protein; TIGRFAM: RfaE bifunctional protein, domain II; Cytidyltransferase-related; manually curated; PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain YP_004340492.1 COGs: COG0279 Phosphoheptose isomerase; HAMAP: Phosphoheptose isomerase; InterPro IPR020620; IPR004515; KEGG: cac:CA_C3054 phosphoheptose isomerase; SPTR: Phosphoheptose isomerase; TIGRFAM: Phosphoheptose isomerase, subgroup; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase YP_004340493.1 COGs: COG2269 Truncated possibly inactive lysyl-tRNA synthetase (class II); InterPro IPR004364; KEGG: aae:aq_763 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); PRIAM: Lysine--tRNA ligase; SPTR: Uncharacterized protein aq_763; PFAM: tRNA synthetases class II (D, K and N) YP_004340494.1 InterPro IPR005242; KEGG: tye:THEYE_A0587 hypothetical protein; SPTR: Membrane protein, putative; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_004340495.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: Lysidine-tRNA(Ile) synthetase; InterPro IPR011063; IPR012094; IPR012795; KEGG: ttm:Tthe_0359 tRNA(Ile)-lysidine synthetase; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; SPTR: tRNA(Ile)-lysidine synthase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; PFAM: PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, N-terminal domain YP_004340496.1 COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR007848; IPR004556; IPR019874; KEGG: pub:SAR11_0519 hypothetical protein; PFAM: Methyltransferase small; SPTR: HemK; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small domain; TIGRFAM: HemK family putative methylases; protein-(glutamine-N5) methyltransferase, release factor-specific YP_004340497.1 COGs: COG1692 conserved hypothetical protein; InterPro IPR004843; IPR005235; KEGG: lba:Lebu_0692 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; TIGRFAM: Conserved hypothetical protein CHP00282; TIGRFAM: metallophosphoesterase, MG_246/BB_0505 family YP_004340498.1 COGs: COG1418 HD superfamily hydrolase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; InterProIPR018111; IPR006674; IPR004087; IPR003607; IPR 017705; IPR006675; KEGG: ddf:DEFDS_0481 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; K Homology, type 1, subgroup; SMART: Metal-dependent phosphohydrolase, HD domain; K Homology; SPTR: Putative uncharacterized protein; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Uncharacterised protein family HDIG; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG YP_004340499.1 COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: amt:Amet_4132 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase YP_004340500.1 COGs: COG0070 Glutamate synthase domain 3; InterPro IPR002489; KEGG: tma:TM0394 hypothetical protein; PFAM: Glutamate synthase, alpha subunit, C-terminal; SPTR: Putative uncharacterized protein; PFAM: GXGXG motif YP_004340501.1 COGs: COG0067 Glutamate synthase domain 1; InterPro IPR000583; KEGG: gur:Gura_2491 glutamine amidotransferase, class-II; PFAM: Glutamine amidotransferase, class-II; SPTR: Glutamate synthase (NADPH) GltB1 subunit; PFAM: Glutamine amidotransferases class-II YP_004340502.1 COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027; KEGG: thx:Thet_0616 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NAD(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004340503.1 COGs: COG1142 Fe-S-cluster-containing hydrogenase components 2; InterPro IPR001450; KEGG: gur:Gura_2493 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S binding domain; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain YP_004340504.1 COGs: COG0069 Glutamate synthase domain 2; InterPro IPR001450; IPR002932; KEGG: dth:DICTH_0168 glutamate synthase; PFAM: Glutamate synthase, central-C; 4Fe-4S binding domain; PRIAM: Glutamate synthase (NADPH); SPTR: Glutamate synthase; PFAM: Conserved region in glutamate synthase YP_004340505.1 COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182; KEGG: nam:NAMH_1193 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Amino-acid acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004340506.1 COGs: COG0141 Histidinol dehydrogenase; HAMAP: Histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: gbm:Gbem_3704 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase YP_004340507.1 COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382; IPR007085; IPR005252; KEGG: ckr:CKR_1263 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Putative uncharacterized protein; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic YP_004340508.1 COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro IPR003329; IPR004528; KEGG: hor:Hore_18930 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_004340509.1 COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611; IPR011913; KEGG: ipo:Ilyop_1819 RfaE bifunctional protein; PFAM: Carbohydrate/purine kinase; SPTR: Bifunctional protein RfaE, domain I; TIGRFAM: RfaE bifunctional protein, domain I; PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I YP_004340510.1 COGs: COG5581 glycosyltransferase; InterPro IPR009875; KEGG: ddf:DEFDS_0952 type IV pilus assembly protein PilZ; PFAM: Type IV pilus assembly PilZ; SPTR: Type IV pilus assembly protein PilZ; PFAM: PilZ domain YP_004340511.1 COGs: COG2844 UTP:GlnB (protein PII) uridylyltransferase; InterPro IPR013546; IPR006674; IPR002912; IPR003607; KEGG: gsu:GSU1820 protein-P-II uridylyltransferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Metal-dependent phosphohydrolase, HD subdomain; Amino acid-binding ACT; PRIAM: [Protein-PII] uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Protein-P-II uridylyltransferase, putative; PFAM: GlnD PII-uridylyltransferase; HD domain; TIGRFAM: [Protein-PII] uridylyltransferase YP_004340512.1 COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187; KEGG: pmx:PERMA_1585 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; SPTR: Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II YP_004340513.1 KEGG: ctc:CTC01652 hypothetical protein; SPTR: Conserved protein YP_004340514.1 InterPro IPR009875; KEGG: tjr:TherJR_1519 type IV pilus assembly PilZ; PFAM: Type IV pilus assembly PilZ; SPTR: Type IV pilus assembly PilZ; PFAM: PilZ domain YP_004340515.1 COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; IPR006371; KEGG: chy:CHY_1807 putative 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: Putative 4-hydroxybenzoate polyprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase-related; PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase YP_004340516.1 COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR000462; IPR004570; KEGG: cow:Calow_0768 cdp-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_004340517.1 COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: tpd:Teth39_1467 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic transglycosylase, catalytic; PFAM: Transglycosylase SLT domain YP_004340518.1 InterPro IPR001440; IPR013105; IPR019734; KEGG: saf:SULAZ_1547 tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: Tetratricopeptide repeat domain protein YP_004340519.1 COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: gur:Gura_2799 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_004340520.1 COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR008915; IPR001478; IPR004387; KEGG: ddf:DEFDS_0124 membrane-associated zinc metalloprotease; PFAM: Peptidase M50; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: Membrane-associated zinc metalloprotease; TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP YP_004340521.1 COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR013512; IPR013644; IPR003821; KEGG: ttm:Tthe_1418 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004340522.1 COGs: COG4589 CDP-diglyceride synthetase/phosphatidate cytidylyltransferase; InterPro IPR000374; KEGG: ttm:Tthe_1419 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family YP_004340523.1 COGs: COG0020 Undecaprenyl pyrophosphate synthase; HAMAP:Di-trans-poly-cis-decaprenylcistransferase-li ke; InterPro IPR001441; KEGG: coc:Coch_1356 undecaprenyl diphosphate synthase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Undecaprenyl diphosphate synthase; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_004340524.1 COGs: COG0233 Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; InterPro IPR002661; IPR015998; KEGG: glo:Glov_2711 ribosome recycling factor; PFAM: Ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: Ribosome recycling factor; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_004340525.1 COGs: COG0528 Uridylate kinase; InterPro IPR001048; IPR015963; KEGG: saf:SULAZ_0196 uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase; SPTR: UMP kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase YP_004340526.1 COGs: COG0264 Translation elongation factor Ts; HAMAP: Translation elongation factor EFTs/EF1B; InterPro IPR000449; IPR014039; IPR001816; KEGG: hmo:HM1_2257 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: Elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts YP_004340527.1 COGs: COG0052 Ribosomal protein S2; InterPro IPR001865; IPR005706; KEGG: nis:NIS_1537 30S ribosomal protein S2; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_004340528.1 COGs: COG1287 membrane protein required for N-linked glycosylation; InterPro IPR003674; KEGG: ddf:DEFDS_0397 hypothetical protein; PFAM: Oligosaccharyl transferase, STT3 subunit; SPTR: Putative uncharacterized protein; PFAM: Oligosaccharyl transferase STT3 subunit YP_004340529.1 COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: abu:Abu_1633 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetate (FAA) hydrolase family YP_004340530.1 COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; InterPro IPR001279; KEGG: adg:Adeg_1793 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily YP_004340531.1 COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro IPR006062; IPR023016; IPR006063; KEGG: sul:SYO3AOP1_1665 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_004340532.1 COGs: COG0118 Glutamine amidotransferase; HAMAP: Imidazole glycerol phosphate synthase, subunit H; InterPro IPR000991; IPR010139; KEGG: glo:Glov_1020 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_004340533.1 COGs: COG0796 Glutamate racemase; HAMAP: Glutamate racemase; InterPro IPR015942; IPR004391; KEGG: geo:Geob_1363 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: Glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_004340534.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: tye:THEYE_A0350 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; SPTR: Phosphoglycerate mutase; PFAM: Phosphoglycerate mutase family YP_004340535.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: paa:Paes_2264 cell cycle protein; PFAM: Cell cycle protein; SPTR: Cell cycle protein; PFAM: Cell cycle protein YP_004340536.1 COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013221; IPR004101; IPR005762; KEGG: aae:aq_2075 UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_004340537.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; InterPro IPR018480; IPR000715; IPR003524; KEGG: sse:Ssed_0407 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR: Putative uncharacterized protein; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase YP_004340538.1 COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR000713; IPR013221; IPR004101; IPR005863; KEGG: vpr:Vpar_1116 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-MurNAc-pentapeptide synthetase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_004340539.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR000713; IPR013221; IPR004101; IPR005761; KEGG: cno:NT01CX_1937 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase YP_004340540.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: rci:RRC116 putative long chain fatty-acid CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: Putative long chain fatty-acid CoA ligase; PFAM: AMP-binding enzyme YP_004340541.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; KEGG: ddf:DEFDS_2074 acetyl-CoA synthetase family protein; PFAM: AMP-dependent synthetase/ligase; PRIAM: Butyrate--CoA ligase; SPTR: Acetyl-CoA synthetase family protein; PFAM: AMP-binding enzyme YP_004340542.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: cst:CLOST_1222 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II YP_004340543.1 KEGG: acp:A2cp1_1535 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340544.1 COGs: COG0421 Spermidine synthase; HAMAP: Spermine synthase; InterPro IPR001045; KEGG: cbe:Cbei_4410 spermidine synthase; PFAM: Spermine synthase; SPTR: Spermidine synthase; TIGRFAM: Spermine synthase; PFAM: Spermine/spermidine synthase; TIGRFAM: spermidine synthase YP_004340545.1 COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: nis:NIS_0844 2-oxoglutarate-acceptor oxidoreductase subunit OorC; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; PRIAM: 2-oxoglutarate synthase; SPTR: Indolepyruvate ferredoxin oxidoreductase; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase YP_004340546.1 COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: ddf:DEFDS_0924 2-oxoglutarate ferredoxin oxidoreductase subunit beta; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: 2-oxoglutarate ferredoxin oxidoreductase, beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004340547.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880; KEGG: geo:Geob_2666 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; PRIAM: 2-oxoglutarate synthase; SPTR: Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: domain; Transketolase, C-terminal domain YP_004340548.1 InterPro IPR001450; KEGG: nam:NAMH_1229 2-oxoglutarate-acceptor oxidoreductase subunit OorD; PFAM: 4Fe-4S binding domain; SPTR: 2-oxoglutarate-acceptor oxidoreductase subunit OorD; PFAM: 4Fe-4S binding domain; TIGRFAM: photosystem I iron-sulfur protein PsaC YP_004340549.1 COGs: COG2838 Monomeric isocitrate dehydrogenase; InterPro IPR004436; KEGG: ddf:DEFDS_0918 isocitrate dehydrogenase NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type YP_004340550.1 COGs: COG1994 Zn-dependent protease; InterPro IPR008915; KEGG: afr:AFE_1788 membrane-associated zinc metalloprotease, putative; PFAM: Peptidase M50; SPTR: Peptidase M50; PFAM: Peptidase family M50 YP_004340551.1 COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197; IPR006638; KEGG: sat:SYN_01240 pyruvate formate-lyase activating enzyme; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Pyruvate-formate-lyase-activating enzyme; PFAM: Radical SAM superfamily YP_004340552.1 COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836; KEGG: dat:HRM2_32180 Hpt; PFAM: Phosphoribosyltransferase; SPTR: Hpt; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase YP_004340553.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR020536; KEGG: dtu:Dtur_1496 protein of unknown function DUF814; PFAM: Thiamine biosynthesis protein, C-terminal; SPTR: Thiamine biosynthesis protein:ExsB; PFAM: Thiamine biosynthesis protein (ThiI) YP_004340554.1 COGs: COG0216 Protein chain release factor A; HAMAP: Peptide chain release factor 1; InterPro IPR005139; IPR000352; IPR004373; KEGG: nis:NIS_0104 peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor; SMART: Peptide chain release factor; SPTR: Peptide chain release factor 1; TIGRFAM: Peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1 YP_004340555.1 COGs: COG0012 GTPase probable translation factor; InterPro IPR002917; IPR013029; IPR004396; KEGG: ttm:Tthe_1779 GTP-binding protein YchF; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR: GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF YP_004340556.1 COGs: COG0196 FAD synthase; InterPro IPR015864; IPR015865; IPR002606; KEGG: ddf:DEFDS_1953 riboflavin biosynthesis regulatory protein RibF; PFAM: FAD synthetase; Riboflavin kinase; PRIAM: FAD synthetase., Riboflavin kinase; SMART: Riboflavin kinase; SPTR: Riboflavin biosynthesis regulatory protein RibF; TIGRFAM: Riboflavin kinase/FAD synthetase; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase YP_004340557.1 COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; IPR022390; KEGG: hor:Hore_14820 UbiD family decarboxylase; PFAM: Carboxylyase-related; SPTR: UbiD family decarboxylase; TIGRFAM: Menaquinone biosynthesis decarboxylase, SCO4490; Carboxylyase-related; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: menaquinone biosynthesis decarboxylase, SCO4490 family; UbiD family decarboxylases YP_004340558.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: fph:Fphi_0734 nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase family protein; PFAM: Nitroreductase family YP_004340559.1 COGs: COG1200 RecG-like helicase; InterPro IPR004365; IPR011545; IPR001650; IPR014001; KEGG: tpd:Teth39_1305 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG YP_004340560.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: gsu:GSU0029 carbon-nitrogen family hydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Hydrolase, carbon-nitrogen family; PFAM: Carbon-nitrogen hydrolase YP_004340561.1 InterPro IPR022453; KEGG: bfo:BRAFLDRAFT_62880 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Zinc finger, YgiT-type; TIGRFAM: YgiT-type zinc finger domain YP_004340562.1 COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165; KEGG: slp:Slip_0099 glutaconate CoA-transferase; PFAM: Coenzyme A transferase; SPTR: Glutaconate CoA-transferase; PFAM: Coenzyme A transferase YP_004340563.1 InterPro IPR004165; KEGG: dat:HRM2_38690 GctA; PFAM: Coenzyme A transferase; SPTR: Putative uncharacterized protein; PFAM: Coenzyme A transferase YP_004340564.1 KEGG: kla:KLLA0A06512g hypothetical protein; SPTR: KLLA0A06512p YP_004340565.1 KEGG: mmu:22137 Ttk protein kinase; SPTR: Putative uncharacterized protein YP_004340566.1 COGs: COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; InterPro IPR004165; KEGG: ddf:DEFDS_1550 coenzyme A transferase; PFAM: Coenzyme A transferase; SMART: Coenzyme A transferase; SPTR: Coenzyme A transferase; PFAM: Coenzyme A transferase YP_004340567.1 KEGG: dap:Dacet_0727 resolvase domain protein; SPTR: Resolvase domain protein; PFAM: Resolvase, N terminal domain YP_004340568.1 KEGG: ath:AT1G78270 AtUGT85A4 (UDP-glucosyl transferase 85A4); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring hexosyl groups; SPTR: Putative uncharacterized protein YP_004340569.1 COGs: COG0379 Quinolinate synthase; HAMAP: Quinolinate synthase A, type 2; InterPro IPR003473; IPR023066; KEGG: cth:Cthe_2356 quinolinate synthetase A; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthase A; TIGRFAM: Quinolinate synthetase A; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit YP_004340570.1 COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR022412; IPR002638; IPR004393; KEGG: pmx:PERMA_0388 nicotinate-nucleotide diphosphorylase (carboxylating); PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide diphosphorylase (Carboxylating); TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase YP_004340571.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: gme:Gmet_2863 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase YP_004340572.1 COGs: COG0171 NAD synthase; HAMAP: NH(3)-dependent NAD(+) synthetase; InterPro IPR022310; IPR003694; IPR022926; KEGG: aac:Aaci_2118 NAD+ synthetase; PFAM: NAD/GMP synthase; SPTR: NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD synthase; PFAM: NAD synthase; TIGRFAM: NAD+ synthetase YP_004340573.1 COGs: COG1271 Cytochrome bd-type quinol oxidase subunit 1; InterPro IPR002585; KEGG: ddf:DEFDS_1619 cytochrome bd oxidase subunit I; PFAM: Cytochrome d ubiquinol oxidase, subunit I; SPTR: Cytochrome bd oxidase subunit I; PFAM: Bacterial Cytochrome Ubiquinol Oxidase YP_004340574.1 COGs: COG1294 Cytochrome bd-type quinol oxidase subunit 2; InterPro IPR003317; KEGG: ddf:DEFDS_1620 cytochrome bd oxidase subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II; SPTR: Cytochrome bd oxidase subunit II; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB) YP_004340575.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805; IPR015890; KEGG: ddf:DEFDS_0438 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase component I; PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme YP_004340576.1 COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR000991; IPR006221; KEGG: clj:CLJU_c16080 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase component II; TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_004340577.1 COGs: COG0547 Anthranilate phosphoribosyltransferase; HAMAP: Anthranilate phosphoribosyl transferase; InterPro IPR017459; IPR000312; IPR005940; KEGG: csc:Csac_2234 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: Anthranilate phosphoribosyl transferase; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase YP_004340578.1 COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798; KEGG: ddf:DEFDS_0441 indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: Indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_004340579.1 COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: hya:HY04AAS1_1258 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase YP_004340580.1 COGs: COG0133 Tryptophan synthase beta chain; HAMAP: Tryptophan synthase beta chain/beta chain-like; InterPro IPR001926; IPR006654; IPR023026; KEGG: ddf:DEFDS_0443 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase beta chain 1; TIGRFAM: Tryptophan synthase, beta chain; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit YP_004340581.1 COGs: COG0159 Tryptophan synthase alpha chain; InterPro IPR002028; KEGG: ddf:DEFDS_0444 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit YP_004340582.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ddf:DEFDS_0602 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase; PFAM: Glycosyl transferases group 1 YP_004340583.1 COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; HAMAP: Phosphoribosyl-ATP pyrophosphohydrolase; Histidine biosynthesis bifunctional protein HisIE; InterPro IPR002496; IPR021130; IPR008179; IPR023019; KEGG: cth:Cthe_2889 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; PRIAM: Phosphoribosyl-AMP cyclohydrolase., Phosphoribosyl-ATP diphosphatase; SPTR: Phosphoribosyl-ATP pyrophosphatase / phosphoribosyl-AMP cyclohydrolase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase YP_004340584.1 InterPro IPR000620; KEGG: ppd:Ppro_2052 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family YP_004340585.1 COGs: COG0237 Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; InterPro IPR001977; KEGG: chy:CHY_1647 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_004340586.1 COGs: COG2231 Uncharacterized protein related to Endonuclease III; InterPro IPR003265; KEGG: gur:Gura_0196 HhH-GPD family protein; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; SPTR: DNA-3-methyladenine glycosylase III; PFAM: HhH-GPD superfamily base excision DNA repair protein YP_004340587.1 COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterPro IPR001608; IPR011079; IPR000821; KEGG: tit:Thit_1856 alanine racemase; PFAM: Alanine racemase, C-terminal; Alanine racemase, N-terminal; PRIAM: Alanine racemase; SPTR: Alanine racemase; TIGRFAM: Alanine racemase; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase YP_004340588.1 COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component; PFAM: Domain of unknown function DUF140; SPTR: ABC-type transport system involved in resistance to organic solvents, permease component; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein YP_004340589.1 COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439; IPR003593; KEGG: sat:SYN_00410 ABC-type transport system, ATP-binding component; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transport system, ATP-binding component; PFAM: ABC transporter YP_004340590.1 COGs: COG1427 periplasmic solute-binding protein; InterPro IPR003773; KEGG: cpi:Cpin_4038 protein of unknown function DUF178; PFAM: Protein of unknown function DUF178; SPTR: Putative uncharacterized protein; PFAM: Putative periplasminc binding protein (DUF178) YP_004340591.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; IPR005786; KEGG: son:SO_0340 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase II; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II YP_004340592.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: dap:Dacet_1180 ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family YP_004340593.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439; IPR004602; KEGG: ddf:DEFDS_0014 excinuclease ABC subunit A; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004340594.1 COGs: COG0305 Replicative DNA helicase; InterPro IPR007693; IPR007694; IPR007692; IPR003593; KEGG: gbm:Gbem_2801 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_004340595.1 COGs: COG0359 Ribosomal protein L9; HAMAP: Ribosomal protein L9, bacteria/chloroplast; InterPro IPR020070; IPR020069; IPR020594; KEGG: tte:TTE2775 50S ribosomal protein L9; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal; SPTR: 50S ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9 YP_004340596.1 COGs: COG0238 Ribosomal protein S18; HAMAP: Ribosomal protein S18; InterPro IPR001648; KEGG: tai:Taci_0652 ribosomal protein S18; PFAM: Ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: Ribosomal protein S18; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_004340597.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424; IPR011344; KEGG: caa:Caka_1586 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_004340598.1 COGs: COG0360 Ribosomal protein S6; HAMAP: Ribosomal protein S6, plastid/chloroplast; InterPro IPR000529; IPR020814; KEGG: ddf:DEFDS_1987 30S ribosomal protein S6; PFAM: Ribosomal protein S6; SPTR: 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_004340599.1 COGs: COG1040 amidophosphoribosyltransferase; KEGG: tte:TTE0490 amidophosphoribosyltransferase; SPTR: Predicted amidophosphoribosyltransferases; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein YP_004340600.1 COGs: COG1734 DnaK suppressor protein; InterPro IPR000962; KEGG: cff:CFF8240_0249 TraR/DksA family transcriptional regulator; SPTR: Transcriptional regulators, TraR/DksA family; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: RNA polymerase-binding protein DksA YP_004340601.1 KEGG: bha:BH0827 fructose 1-phosphate kinase YP_004340602.1 InterPro IPR002197; KEGG: csc:Csac_2704 hypothetical protein; PFAM: Helix-turn-helix, Fis-type; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, Fis family YP_004340603.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sul:SYO3AOP1_1122 transposase mutator type; PFAM: Transposase, mutator type; SPTR: Transposase mutator type; PFAM: Transposase, Mutator family YP_004340604.1 COGs: COG1484 DNA replication protein; InterPro IPR002611; IPR003593; KEGG: csc:Csac_2606 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: IstB domain protein ATP-binding protein; PFAM: IstB-like ATP binding protein YP_004340605.1 KEGG: wch:wcw_1575 transposase; SPTR: Transposase YP_004340606.1 KEGG: brm:Bmur_2401 dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein; SPTR: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein YP_004340607.1 COGs: COG1010 Precorrin-3B methylase; InterPro IPR000878; IPR006363; KEGG: ddf:DEFDS_2040 precorrin-3B C(17)-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Precorrin-3B C(17)-methyltransferase; SPTR: Precorrin-3B C(17)-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-3B C17-methyltransferase YP_004340608.1 COGs: COG2073 Cobalamin biosynthesis protein CbiG; InterPro IPR002750; KEGG: ddf:DEFDS_2041 cobalamin biosynthesis protein CbiG; PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; SPTR: Cobalamin biosynthesis protein CbiG; PFAM: Cobalamin synthesis G C-terminus; Cobalamin synthesis G N-terminal YP_004340609.1 COGs: COG2875 Precorrin-4 methylase; InterPro IPR000878; IPR006362; KEGG: ttm:Tthe_1841 precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Precorrin-4 C(11)-methyltransferase; SPTR: Precorrin-4 C11-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-4 C11-methyltransferase YP_004340610.1 COGs: COG2241 Precorrin-6B methylase 1; InterPro IPR000878; IPR012818; KEGG: ddf:DEFDS_2043 precorrin-6Y C(5,15)-methyltransferase (decarboxylating); PFAM: Tetrapyrrole methylase; SPTR: Precorrin-6Y C(5,15)-methyltransferase (Decarboxylating); TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; manually curated; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit YP_004340611.1 COGs: COG1903 Cobalamin biosynthesis protein CbiD; HAMAP: Cobalamin (vitamin B12) biosynthesis CbiD; InterPro IPR002748; KEGG: ddf:DEFDS_2044 cobalamin biosynthesis protein CbiD; PFAM: Cobalamin (vitamin B12) biosynthesis CbiD; SPTR: Putative cobalt-precorrin-6A synthase [deacetylating]; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiD; PFAM: CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD YP_004340612.1 COGs: COG1797 Cobyrinic acid a c-diamide synthase; InterPro IPR002586; IPR011698; IPR004484; KEGG: ddf:DEFDS_2061 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid a,c-diamide synthase; TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase YP_004340613.1 COGs: COG4822 Cobalamin biosynthesis protein CbiK Co2+ chelatase; InterPro IPR010388; KEGG: dat:HRM2_07680 CbiK1; PFAM: Anaerobic cobalt chelatase; SPTR: CbiK1; PFAM: Cobalt chelatase (CbiK) YP_004340614.1 COGs: COG4139 ABC-type cobalamin transport system permease component; InterPro IPR000522; KEGG: ddf:DEFDS_2059 iron ABC transporter permease; PFAM: ABC transporter permease protein; SPTR: Iron ABC transporter, permease; PFAM: FecCD transport family YP_004340615.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439; IPR003593; KEGG: ddf:DEFDS_2058 iron ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Iron ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004340616.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: ddf:DEFDS_2057 iron ABC transporter substrate-binding protein; PFAM: Periplasmic binding protein; SPTR: Iron ABC transporter, substrate-binding protein; PFAM: Periplasmic binding protein YP_004340617.1 COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR000878; KEGG: ddf:DEFDS_2056 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Uroporphyrinogen-III C-methyltransferase; SPTR: Uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases YP_004340618.1 COGs: COG2243 Precorrin-2 methylase; InterPro IPR000878; IPR006364; KEGG: ddf:DEFDS_2055 precorrin-2 C(20)-methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Precorrin-2 C(20)-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase YP_004340619.1 COGs: COG2082 Precorrin isomerase; InterPro IPR003722; KEGG: ddf:DEFDS_2054 precorrin-8X methylmutase; PFAM: Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core; PRIAM: Precorrin-8X methylmutase; SPTR: Precorrin-8X methylmutase; PFAM: Precorrin-8X methylmutase YP_004340620.1 COGs: COG2099 Precorrin-6x reductase; InterPro IPR003723; KEGG: ddf:DEFDS_2053 precorrin-6A reductase; PFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; SPTR: Precorrin-6x reductase CbiJ/CobK; PFAM: Precorrin-6x reductase CbiJ/CobK; TIGRFAM: precorrin-6x reductase YP_004340621.1 COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR006367; KEGG: aae:aq_1237 siroheme synthase; SPTR: Siroheme synthase; TIGRFAM: Sirohaem synthase, N-terminal; TIGRFAM: siroheme synthase, N-terminal domain YP_004340622.1 KEGG: pmx:PERMA_2023 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340623.1 KEGG: cha:CHAB381_1357 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340624.1 KEGG: ddf:DEFDS_0793 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340625.1 KEGG: ddf:DEFDS_0793 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340626.1 InterPro IPR002889; IPR013994; KEGG: ddf:DEFDS_2033 hypothetical protein; PFAM: Carbohydrate-binding WSC; SMART: Carbohydrate-binding WSC, subgroup; SPTR: Putative uncharacterized protein; PFAM: WSC domain YP_004340627.1 InterPro IPR002109; KEGG: afu:AF2144 thioredoxin (trx-4); PFAM: Glutaredoxin; SPTR: Putative uncharacterized protein; PFAM: Thioredoxin YP_004340628.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439; IPR003593; KEGG: tpt:Tpet_1606 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter YP_004340629.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439; IPR003593; KEGG: tai:Taci_1394 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_004340630.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: tai:Taci_1395 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component YP_004340631.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: tai:Taci_1396 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component YP_004340632.1 COGs: COG1228 Imidazolonepropionase and related amidohydrolase; HAMAP: Imidazolonepropionase; InterPro IPR006680; IPR005920; KEGG: gct:GC56T3_2176 imidazolonepropionase; PFAM: Amidohydrolase 1; PRIAM: Imidazolonepropionase; SPTR: Imidazolonepropionase; TIGRFAM: Imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase YP_004340633.1 COGs: COG2987 Urocanate hydratase; InterPro IPR000193; KEGG: clj:CLJU_c21480 urocanate hydratase; PFAM: Urocanase; PRIAM: Urocanate hydratase; SPTR: Urocanate hydratase; TIGRFAM: Urocanase; PFAM: Urocanase; TIGRFAM: urocanate hydratase YP_004340634.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tai:Taci_1392 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region YP_004340635.1 COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; HAMAP: Formiminoglutamase; InterPro IPR006035; IPR005923; KEGG: ddf:DEFDS_0936 formimidoylglutamase; PFAM: Ureohydrolase; PRIAM: Formimidoylglutamase; SPTR: Formimidoylglutamase; TIGRFAM: Formiminoglutamase; PFAM: Arginase family; TIGRFAM: formimidoylglutamase YP_004340636.1 COGs: COG2986 Histidine ammonia-lyase; InterPro IPR001106; IPR005921; KEGG: cpi:Cpin_2006 histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; SPTR: Histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase YP_004340637.1 InterPro IPR000835; KEGG: cpi:Cpin_2005 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family YP_004340638.1 COGs: COG0029 Aspartate oxidase; InterPro IPR003953; IPR005288; KEGG: tye:THEYE_A0678 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; PRIAM: L-aspartate oxidase; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase YP_004340639.1 COGs: COG0031 Cysteine synthase; InterPro IPR001926; KEGG: dth:DICTH_1733 cysteine synthase A; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Cysteine synthase; SPTR: Cysteine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A YP_004340640.1 COGs: COG0571 dsRNA-specific ribonuclease; HAMAP: Ribonuclease III, bacterial; InterPro IPR000999; IPR001159; IPR011907; KEGG: ddf:DEFDS_0155 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA-binding; PRIAM: Ribonuclease III; SMART: Ribonuclease III; Double-stranded RNA-binding; SPTR: Ribonuclease 3; TIGRFAM: Ribonuclease III, bacterial; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial YP_004340641.1 COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR002917; IPR004044; IPR005225; IPR005662; KEGG: cow:Calow_1190 gtp-binding protein era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; SPTR: GTP-binding protein era homolog; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: GTPase of unknown function; KH domain; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain YP_004340642.1 COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR006668; IPR000644; IPR006667; IPR006669; KEGG: ddf:DEFDS_1083 magnesium transporter; PFAM: MgtE magnesium transporter, integral membrane; Cystathionine beta-synthase, core; Magnesium transporter, MgtE intracellular domain; SMART: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; SPTR: Magnesium transporter; TIGRFAM: Divalent cation transporter; PFAM: MgtE intracellular N domain; Divalent cation transporter; CBS domain; TIGRFAM: Mg2+ transporter (mgtE) YP_004340643.1 COGs: COG1109 Phosphomannomutase; InterProIPR005844; IPR005845; IPR005846; IPR005843; IPR 006352; KEGG: bba:Bd1931 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; PRIAM: Phosphoglucosamine mutase; SPTR: Phosphoglucosamine mutase; TIGRFAM: Phosphoglucosamine mutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase YP_004340644.1 InterPro IPR013740; KEGG: bcq:BCQ_1543 thiol-disulfide oxidoreductase; PFAM: Redoxin; SPTR: Thiol-disulfide oxidoreductase; PFAM: Redoxin YP_004340645.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139; IPR006140; IPR002912; IPR006236; KEGG: nis:NIS_0664 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Amino acid-binding ACT; PRIAM: Phosphoglycerate dehydrogenase; SPTR: D-3-PHOSPHOGLYCERATE DEHYDROGENASE; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase YP_004340646.1 COGs: COG2604 conserved hypothetical protein; InterPro IPR002826; IPR001440; IPR013105; IPR019734; KEGG: cno:NT01CX_1883 hypothetical protein; PFAM: Protein of unknown function DUF115; Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SPTR: Conserved protein; PFAM: Protein of unknown function DUF115 YP_004340647.1 COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001029; IPR010810; KEGG: sua:Saut_0131 flagellin domain-containing protein; PFAM: Flagellin, D0/D1 domain; Flagellin hook, IN motif; SPTR: Flagellin domain protein; PFAM: Bacterial flagellin N-terminal helical region; Flagellin hook IN motif; Bacterial flagellin C-terminal helical region YP_004340648.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; IPR020026; KEGG: msi:Msm_1536 pleiotropic regulatory protein DegT (PLP-dependent); PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Pleiotropic regulatory protein DegT (PLP-dependent); TIGRFAM: Pseudaminic acid biosynthesis, PseC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase YP_004340649.1 COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; IPR020025; KEGG: nam:NAMH_1609 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: Polysaccharide biosynthesis protein; TIGRFAM: Pseudaminic acid biosynthesis, PseB; PFAM: Polysaccharide biosynthesis protein; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase YP_004340650.1 COGs: COG3980 Spore coat polysaccharide biosynthesis protein predicted glycosyltransferase; InterPro IPR007235; IPR020023; KEGG: hth:HTH_1348 glycosyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; SPTR: Glycosyltransferase; TIGRFAM: Pseudaminic acid biosynthesis-associated protein PseG; PFAM: Glycosyltransferase family 28 C-terminal domain; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG YP_004340651.1 KEGG: cbk:CLL_A1555 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340652.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: sua:Saut_0138 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase YP_004340653.1 KEGG: nam:NAMH_1596 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340654.1 KEGG: ddf:DEFDS_0371 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340655.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ddf:DEFDS_0372 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_004340656.1 InterPro IPR018873; KEGG: cph:Cpha266_2646 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: Putative uncharacterized protein; PFAM: ORF6N domain YP_004340657.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: ddf:DEFDS_0373 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: Putative uncharacterized protein; PFAM: AMP-binding enzyme YP_004340658.1 COGs: COG2089 Sialic acid synthase; InterPro IPR013132; IPR013974; IPR020030; KEGG: tmt:Tmath_0718 pseudaminic acid synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain; PRIAM: N-acetylneuraminate synthase; SMART: SAF domain; SPTR: Sialic acid synthase; TIGRFAM: Pseudaminic acid biosynthesis, PseI; PFAM: SAF domain; NeuB family; TIGRFAM: pseudaminic acid synthase YP_004340659.1 InterPro IPR018631; IPR012547; KEGG: ddf:DEFDS_0353 hypothetical protein; PFAM: AAA-ATPase-like; Protein of unknown function DUF1703; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_004340660.1 KEGG: tdn:Suden_0201 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340661.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: pca:Pcar_2252 glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase family 2 YP_004340662.1 KEGG: npu:Npun_R0678 glycosyl transferase, group 1; SPTR: Putative uncharacterized protein; PFAM: Capsule polysaccharide biosynthesis protein YP_004340663.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: hya:HY04AAS1_1611 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate decarboxylase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family YP_004340664.1 COGs: COG1817 conserved hypothetical protein; InterPro IPR007152; KEGG: tdn:Suden_0185 hypothetical protein; PFAM: Protein of unknown function DUF354; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF354) YP_004340665.1 COGs: COG1484 DNA replication protein; InterPro IPR002611; IPR003593; KEGG: csc:Csac_2606 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: IstB domain protein ATP-binding protein; PFAM: IstB-like ATP binding protein YP_004340666.1 COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog; InterPro IPR003329; KEGG: ckr:CKR_1847 hypothetical protein; PFAM: Acylneuraminate cytidylyltransferase; SPTR: Putative uncharacterized protein; PFAM: Cytidylyltransferase YP_004340667.1 KEGG: sbi:SORBI_01g028010 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340668.1 KEGG: sua:Saut_1609 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340669.1 COGs: COG5421 Transposase; InterPro IPR002559; KEGG: amc:MADE_02905 transposase, IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain YP_004340670.1 KEGG: pmf:P9303_19701 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340671.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: ddf:DEFDS_0296 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: Putative uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme YP_004340672.1 COGs: COG0757 3-dehydroquinate dehydratase II; HAMAP: Dehydroquinase, class II; InterPro IPR001874; KEGG: ddf:DEFDS_0453 3-dehydroquinate dehydratase II; PFAM: Dehydroquinase, class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase; TIGRFAM: Dehydroquinase, class II; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II YP_004340673.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: cac:CA_C1287 HIT family hydrolase; PFAM: Histidine triad (HIT) protein; SPTR: HIT family hydrolase; PFAM: HIT domain YP_004340674.1 COGs: COG0104 Adenylosuccinate synthase; HAMAP: Adenylosuccinate synthetase; InterPro IPR001114; KEGG: ddf:DEFDS_2122 adenylosuccinate synthase; PFAM: Adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: Adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase YP_004340675.1 COGs: COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis; InterPro IPR002314; KEGG: ttm:Tthe_0558 histidyl-tRNA synthetase 2; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; SPTR: Histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II core domain (G, H, P, S and T) YP_004340676.1 COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: ddf:DEFDS_2124 serine--glyoxylate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Serine--glyoxylate transaminase; SPTR: Serine--glyoxylate transaminase; PFAM: Aminotransferase class-V YP_004340677.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765; IPR007863; KEGG: cdf:CD1320 putative peptidase; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; PRIAM: processing peptidase; SPTR: Putative uncharacterized protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_004340678.1 COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: Polyribonucleotide nucleotidyltransferase; InterProIPR001247; IPR015847; IPR015848; IPR018111; IPR 003029; IPR012162; IPR004087; IPR022967; KEGG: toc:Toce_1231 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA-binding domain; PRIAM: Polyribonucleotide nucleotidyltransferase; SMART: RNA-binding domain, S1; K Homology; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: Polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease family, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase YP_004340679.1 COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR000589; IPR005290; KEGG: ddf:DEFDS_1521 30S ribosomal protein S15; PFAM: Ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_004340680.1 COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR017456; IPR000991; IPR004468; KEGG: tye:THEYE_A0010 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase YP_004340681.1 COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372; KEGG: sul:SYO3AOP1_0179 DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; SPTR: DNA polymerase III, delta subunit YP_004340682.1 KEGG: mvo:Mvol_0543 UvrD/REP helicase; SPTR: UvrD/REP helicase YP_004340683.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; IPR005931; KEGG: ddf:DEFDS_1067 1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase domain; PRIAM: 1-pyrroline-5-carboxylate dehydrogenase; SPTR: 1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 1; PFAM: Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 YP_004340684.1 COGs: COG0506 Proline dehydrogenase; InterPro IPR002872; KEGG: ddf:DEFDS_1068 proline dehydrogenase; PFAM: Proline dehydrogenase; PRIAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; PFAM: Proline dehydrogenase YP_004340685.1 KEGG: ddf:DEFDS_2165 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340686.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: ddf:DEFDS_2166 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/classII; PRIAM: Glycine C-acetyltransferase; SPTR: 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase YP_004340687.1 KEGG: bha:BH0827 fructose 1-phosphate kinase YP_004340688.1 InterPro IPR002197; KEGG: csc:Csac_2704 hypothetical protein; PFAM: Helix-turn-helix, Fis-type; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, Fis family YP_004340689.1 COGs: COG1484 DNA replication protein; InterPro IPR002611; IPR003593; KEGG: avn:Avin_49640 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: IstB-like ATP-binding protein; PFAM: IstB-like ATP binding protein YP_004340690.1 COGs: COG1484 DNA replication protein; InterPro IPR002611; IPR003593; KEGG: csc:Csac_2606 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: IstB domain protein ATP-binding protein; PFAM: IstB-like ATP binding protein YP_004340691.1 COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR013954; IPR006543; IPR006549; KEGG: cpi:Cpin_3112 histidinol-phosphate phosphatase family protein; SPTR: Histidinol-phosphate phosphatase family protein; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; manually curated; PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family domain YP_004340692.1 COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR005835; KEGG: cjj:CJJ81176_1422 capsular biosynthesis nucleotidyltransferase, putative; PFAM: Nucleotidyl transferase; SPTR: Capsular biosynthesis nucleotidyltransferase, putative; PFAM: Nucleotidyl transferase YP_004340693.1 COGs: COG0279 Phosphoheptose isomerase; HAMAP: Phosphoheptose isomerase; InterPro IPR001347; IPR004515; IPR020620; KEGG: cjd:JJD26997_1756 phosphoheptose isomerase; PFAM: Sugar isomerase (SIS); SPTR: Phosphoheptose isomerase; TIGRFAM: Phosphoheptose isomerase, subgroup; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase YP_004340694.1 COGs: COG2605 kinase related to galactokinase and mevalonate kinase; InterPro IPR006204; IPR013750; KEGG: cjr:CJE1610 capsular biosynthesis sugar kinase, putative; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: Capsular biosynthesis sugar kinase, putative; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain YP_004340695.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cpi:Cpin_1089 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1 YP_004340696.1 KEGG: cno:NT01CX_1531 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340697.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: plt:Plut_0772 glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_004340698.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cts:Ctha_2068 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase family 2 YP_004340699.1 KEGG: net:Neut_1827 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340700.1 COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: wsu:WS1957 putative transposase; PFAM: Integrase, catalytic core; SPTR: Putative transposase; PFAM: Integrase core domain YP_004340701.1 InterPro IPR002514; KEGG: dap:Dacet_0689 integrase catalytic region; PFAM: Transposase IS3/IS911family; SPTR: Integrase catalytic region; PFAM: Transposase YP_004340702.1 KEGG: net:Neut_1827 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340703.1 COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: cts:Ctha_2067 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Predicted polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein YP_004340704.1 COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509; IPR005888; KEGG: abu:Abu_1816 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_004340705.1 InterPro IPR012657; KEGG: ant:Arnit_2573 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02436; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436 YP_004340706.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: sua:Saut_0259 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_004340707.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: cpb:Cphamn1_1918 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_004340708.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835; IPR005907; KEGG: sua:Saut_0257 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form YP_004340709.1 InterPro IPR013159; KEGG: gur:Gura_3020 hypothetical protein; PFAM: Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal; SPTR: Putative uncharacterized protein; PFAM: domain; Transposase IS200 like YP_004340710.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sul:SYO3AOP1_1122 transposase mutator type; PFAM: Transposase, mutator type; SPTR: Transposase mutator type; PFAM: Transposase, Mutator family YP_004340711.1 InterPro IPR018873; KEGG: cph:Cpha266_2646 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: Putative uncharacterized protein; PFAM: ORF6N domain YP_004340712.1 InterPro IPR012657; KEGG: gur:Gura_1699 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02436; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436 YP_004340713.1 COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; HAMAP: Sulphate adenylyltransferase, small subunit; InterPro IPR002500; IPR011784; KEGG: mca:MCA2629 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase, small subunit; TIGRFAM: Sulphate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: sulfate adenylyltransferase, small subunit YP_004340714.1 KEGG: cgr:CAGL0L10252g hypothetical protein YP_004340715.1 KEGG: cco:CCC13826_1414 hypothetical protein; SPTR: Putative uncharacterized protein YP_004340716.1 KEGG: gur:Gura_0793 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Transposase IS200 like YP_004340717.1 InterPro IPR000445; IPR003583; KEGG: tme:Tmel_1741 helix-hairpin-helix repeat-containing competence protein ComEA; PFAM: Helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding motif, class 1; SPTR: Competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Helix-hairpin-helix motif; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region YP_004340718.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR000715; KEGG: wsu:WS1738 undecaprenyl phosphate N-acetylglucosaminyltransferase transmembrane protein; PFAM: Glycosyl transferase, family 4; SPTR: UNDECAPRENYL PHOSPHATE N-ACETYLGLUCOSAMINYLTRANSFERASETRANSMEMBRANE PROTEIN; PFAM: Glycosyl transferase family 4 YP_004340719.1 COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR001509; IPR005886; KEGG: saf:SULAZ_0910 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase