-- dump date 20240506_000415 -- class Genbank::Contig -- table contig_comment -- id comment NC_014729.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001690.1.REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 SangerREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGAREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40CREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar salternREFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001690.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## COMPLETENESS: full length. NC_014735.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001691.1.REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 SangerREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGAREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40CREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar salternREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001691.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_014731.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001692.1.REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 SangerREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGAREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40CREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar salternREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001692.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_014736.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001693.1.REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 SangerREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGAREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40CREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar salternREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001693.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_014732.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001694.1.REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 SangerREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGAREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40CREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar salternREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001694.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_014737.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001695.1.REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 SangerREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGAREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto RicoREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40CREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar salternREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001695.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082733 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Halogeometricum borinquense PR3, DSM 11551 Culture Collection ID :: DSM 11551, ATCC 700274, JCM 10706 GOLD Stamp ID :: Gc01108 Funding Program :: DOE-GEBA 2007 Number of Reads :: 2826 Sanger Assembly Method :: Newbler, PGA Sequencing Depth :: 9.7x Sanger; 21.8x 454 Gene Calling Method :: GeneMark, GenePRIMP Isolation Site :: Solar salterns of Cabo Rojo Puerto Rico Isolation Country :: Puerto Rico Latitude :: 18.088189 Longitude :: -67.147095 Oxygen Requirement :: Aerobe Cell Shape :: Pleomorphic-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 40C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Solar saltern ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000172995.2-RS_2024_03_28 Annotation Date :: 03/28/2024 01:51:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,931 CDSs (total) :: 3,871 Genes (coding) :: 3,818 CDSs (with protein) :: 3,818 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 53 CDSs (without protein) :: 53 Pseudo Genes (ambiguous residues) :: 0 of 53 Pseudo Genes (frameshifted) :: 29 of 53 Pseudo Genes (incomplete) :: 31 of 53 Pseudo Genes (internal stop) :: 11 of 53 Pseudo Genes (multiple problems) :: 15 of 53 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.