-- dump date 20140619_083032 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_005275730.1 378710837 11779160 46..1449 1 NC_016902.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: ssn:SSON_3652 chromosomal replication initiation protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA 1449 11779160 EKO11_0001 Escherichia coli KO11FL chromosomal replication initiator protein DnaA YP_005275730.1 46 D 595495 CDS YP_005275731.1 378710838 11779162 1454..2554 1 NC_016902.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: sdy:SDY_4183 DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 2554 11779162 EKO11_0002 Escherichia coli KO11FL DNA polymerase III subunit beta YP_005275731.1 1454 D 595495 CDS YP_005275732.1 378710839 11779818 2554..3627 1 NC_016902.1 KEGG: ssn:SSON_3650 recombination protein F; TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; DNA replication and repair protein RecF 3627 11779818 EKO11_0003 Escherichia coli KO11FL DNA replication and repair protein RecF YP_005275732.1 2554 D 595495 CDS YP_005275733.1 378710840 11779165 3656..6070 1 NC_016902.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA gyrase, B subunit; KEGG: ssn:SSON_3649 DNA gyrase subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; DNA gyrase subunit B 6070 11779165 EKO11_0004 Escherichia coli KO11FL DNA gyrase subunit B YP_005275733.1 3656 D 595495 CDS YP_005275734.1 378710841 11779195 6310..6708 1 NC_016902.1 PFAM: protein of unknown function DUF937; KEGG: ssn:SSON_3648 hypothetical protein; hypothetical protein 6708 11779195 EKO11_0005 Escherichia coli KO11FL hypothetical protein YP_005275734.1 6310 D 595495 CDS YP_005275735.1 378710842 11779197 6823..7635 1 NC_016902.1 KEGG: ssn:SSON_3647 sugar phosphatase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; cof family hydrolase 7635 11779197 EKO11_0006 Escherichia coli KO11FL cof family hydrolase YP_005275735.1 6823 D 595495 CDS YP_005275736.1 378710843 11779199 complement(7681..8337) 1 NC_016902.1 KEGG: sfl:SF3768 hypothetical protein; hypothetical protein 8337 11779199 EKO11_0007 Escherichia coli KO11FL hypothetical protein YP_005275736.1 7681 R 595495 CDS YP_005275737.1 378710844 11779201 8615..9304 1 NC_016902.1 KEGG: sfx:S4002 regulator protein for dgo operon; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 9304 11779201 EKO11_0008 Escherichia coli KO11FL GntR family transcriptional regulator YP_005275737.1 8615 D 595495 CDS YP_005275738.1 378710845 11779203 9301..10179 1 NC_016902.1 KEGG: eoi:ECO111_4521 2-oxo-3-deoxygalactonate kinase; PFAM: 2-keto-3-deoxy-galactonokinase; 2-dehydro-3-deoxygalactonokinase 10179 11779203 EKO11_0009 Escherichia coli KO11FL 2-dehydro-3-deoxygalactonokinase YP_005275738.1 9301 D 595495 CDS YP_005275739.1 378710846 11779249 10163..10780 1 NC_016902.1 PFAM: KDPG and KHG aldolase; KEGG: eoh:ECO103_4465 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; KDPG and KHG aldolase 10780 11779249 EKO11_0010 Escherichia coli KO11FL KDPG and KHG aldolase YP_005275739.1 10163 D 595495 CDS YP_005275740.1 378710847 11779250 10777..11925 1 NC_016902.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ebd:ECBD_0011 galactonate dehydratase; mandelate racemase/muconate lactonizing protein 11925 11779250 EKO11_0011 Escherichia coli KO11FL mandelate racemase/muconate lactonizing protein YP_005275740.1 10777 D 595495 CDS YP_005275741.1 378710848 11775071 12045..13337 1 NC_016902.1 KEGG: ssn:SSON_3642 D-galactonate transport; TIGRFAM: d-galactonate transporter; phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter 13337 11775071 EKO11_0012 Escherichia coli KO11FL d-galactonate transporter YP_005275741.1 12045 D 595495 CDS YP_005275742.1 378710849 11775072 complement(13334..14398) 1 NC_016902.1 PFAM: monooxygenase FAD-binding; KEGG: ebd:ECBD_0013 putative oxidoreductase; monooxygenase FAD-binding protein 14398 11775072 EKO11_0013 Escherichia coli KO11FL monooxygenase FAD-binding protein YP_005275742.1 13334 R 595495 CDS YP_005275743.1 378710850 11775073 14499..15713 1 NC_016902.1 KEGG: ebd:ECBD_0014 hypothetical protein; hypothetical protein 15713 11775073 EKO11_0014 Escherichia coli KO11FL hypothetical protein YP_005275743.1 14499 D 595495 CDS YP_005275744.1 378710851 11775074 complement(15715..16047) 1 NC_016902.1 PFAM: protein of unknown function DUF1375; KEGG: sbc:SbBS512_E4231 hypothetical protein; hypothetical protein 16047 11775074 EKO11_0015 Escherichia coli KO11FL hypothetical protein YP_005275744.1 15715 R 595495 CDS YP_005275745.1 378710852 11775075 16353..16766 1 NC_016902.1 PFAM: heat shock protein Hsp20; KEGG: sdy:SDY_4173 heat shock protein IbpA; heat shock protein Hsp20 16766 11775075 EKO11_0016 Escherichia coli KO11FL heat shock protein Hsp20 YP_005275745.1 16353 D 595495 CDS YP_005275746.1 378710853 11775076 16878..17306 1 NC_016902.1 PFAM: heat shock protein Hsp20; KEGG: sdy:SDY_4172 heat shock chaperone IbpB; heat shock protein Hsp20 17306 11775076 EKO11_0017 Escherichia coli KO11FL heat shock protein Hsp20 YP_005275746.1 16878 D 595495 CDS YP_005275747.1 378710854 11775077 17503..19164 1 NC_016902.1 KEGG: sfx:S3992 hypothetical protein; TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain-containing protein; TrkA-C domain protein; YidE/YbjL duplication 19164 11775077 EKO11_0018 Escherichia coli KO11FL YidE/YbjL duplication YP_005275747.1 17503 D 595495 CDS YP_005275748.1 378710855 11775078 complement(19161..19877) 1 NC_016902.1 KEGG: sdy:SDY_4170 putative transcriptional regulator; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 19877 11775078 EKO11_0019 Escherichia coli KO11FL GntR family transcriptional regulator YP_005275748.1 19161 R 595495 CDS YP_005275749.1 378710856 11779251 20173..21789 1 NC_016902.1 TIGRFAM: PTS system, alpha-glucoside-specific IIBC subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-like IIB subunint; KEGG: eoh:ECO103_4475 PTS system arbutin-like IIC component; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; PTS system alpha-glucoside-specific transporter subunit IIBC 21789 11779251 EKO11_0020 Escherichia coli KO11FL PTS system alpha-glucoside-specific transporter subunit IIBC YP_005275749.1 20173 D 595495 CDS YP_005275750.1 378710857 11775080 complement(22600..23493) 1 NC_016902.1 KEGG: ebd:ECBD_0022 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 23493 11775080 EKO11_0022 Escherichia coli KO11FL AraC family transcriptional regulator YP_005275750.1 22600 R 595495 CDS YP_005275751.1 378710858 11775081 23660..25375 1 NC_016902.1 KEGG: eoi:ECO111_4504 putative symporter YidK; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SSS sodium solute transporter superfamily protein 25375 11775081 EKO11_0023 Escherichia coli KO11FL SSS sodium solute transporter superfamily protein YP_005275751.1 23660 D 595495 CDS YP_005275752.1 378710859 11775082 25372..26865 1 NC_016902.1 PFAM: sulfatase; KEGG: eoh:ECO103_4479 putative sulfatase/phosphatase; sulfatase 26865 11775082 EKO11_0024 Escherichia coli KO11FL sulfatase YP_005275752.1 25372 D 595495 CDS YP_005275753.1 378710860 11779252 complement(26912..27361) 1 NC_016902.1 KEGG: eoi:ECO111_4502 putative inner membrane protein; putative inner membrane protein 27361 11779252 EKO11_0025 Escherichia coli KO11FL putative inner membrane protein YP_005275753.1 26912 R 595495 CDS YP_005275754.1 378710861 11775083 27471..27818 1 NC_016902.1 PFAM: protein of unknown function DUF202; KEGG: sdy:SDY_4160 hypothetical protein; hypothetical protein 27818 11775083 EKO11_0026 Escherichia coli KO11FL hypothetical protein YP_005275754.1 27471 D 595495 CDS YP_005275755.1 378710862 11775084 27808..28170 1 NC_016902.1 KEGG: sbc:SbBS512_E4243 hypothetical protein; hypothetical protein 28170 11775084 EKO11_0027 Escherichia coli KO11FL hypothetical protein YP_005275755.1 27808 D 595495 CDS YP_005275756.1 378710863 11775085 28167..28664 1 NC_016902.1 KEGG: sfv:SFV_3836 putative transcriptional regulator; putative transcriptional regulator 28664 11775085 EKO11_0028 Escherichia coli KO11FL putative transcriptional regulator YP_005275756.1 28167 D 595495 CDS YP_005275757.1 378710864 11775086 complement(28672..29856) 1 NC_016902.1 KEGG: sfv:SFV_3837 multidrug resistance protein D; TIGRFAM: multidrug/H+ antiporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1; multidrug/H+ antiporter 29856 11775086 EKO11_0029 Escherichia coli KO11FL multidrug/H+ antiporter YP_005275757.1 28672 R 595495 CDS YP_005275758.1 378710865 11775087 30149..30400 1 NC_016902.1 KEGG: sbc:SbBS512_E4246 hypothetical protein; hypothetical protein 30400 11775087 EKO11_0030 Escherichia coli KO11FL hypothetical protein YP_005275758.1 30149 D 595495 CDS YP_005275759.1 378710866 11775088 complement(30652..30942) 1 NC_016902.1 manually curated; KEGG: ebd:ECBD_0031 hypothetical protein; hypothetical protein 30942 11775088 EKO11_0031 Escherichia coli KO11FL hypothetical protein YP_005275759.1 30652 R 595495 CDS YP_005275760.1 378710867 11775089 31133..32821 1 NC_016902.1 KEGG: sbc:SbBS512_E4248 acetolactate synthase catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; acetolactate synthase large subunit 32821 11775089 EKO11_0032 Escherichia coli KO11FL acetolactate synthase large subunit YP_005275760.1 31133 D 595495 CDS YP_005275761.1 378710868 11775090 32825..33115 1 NC_016902.1 KEGG: ssn:SSON_3624 acetolactate synthase 1 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit 33115 11775090 EKO11_0033 Escherichia coli KO11FL acetolactate synthase small subunit YP_005275761.1 32825 D 595495 CDS YP_005275762.1 378710869 11775091 33190..33780 1 NC_016902.1 KEGG: sbc:SbBS512_E4250 DNA-binding transcriptional activator UhpA; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; two component transcriptional regulator, LuxR family 33780 11775091 EKO11_0034 Escherichia coli KO11FL two component transcriptional regulator, LuxR family YP_005275762.1 33190 D 595495 CDS YP_005275763.1 378710870 11775092 33780..35282 1 NC_016902.1 KEGG: sbo:SBO_3701 sensory histidine kinase UhpB; PFAM: MASE1 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; integral membrane sensor signal transduction histidine kinase 35282 11775092 EKO11_0035 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005275763.1 33780 D 595495 CDS YP_005275764.1 378710871 11775093 35292..36611 1 NC_016902.1 KEGG: eoh:ECO103_4490 regulatory protein UhpC; TIGRFAM: phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1; phosphoglycerate transporter 36611 11775093 EKO11_0036 Escherichia coli KO11FL phosphoglycerate transporter YP_005275764.1 35292 D 595495 CDS YP_005275765.1 378710872 11775094 36749..38140 1 NC_016902.1 KEGG: sbo:SBO_3703 sugar phosphate antiporter; TIGRFAM: phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1; phosphoglycerate transporter 38140 11775094 EKO11_0037 Escherichia coli KO11FL phosphoglycerate transporter YP_005275765.1 36749 D 595495 CDS YP_005275766.1 378710873 11775095 complement(38185..39951) 1 NC_016902.1 TIGRFAM: adenine deaminase; KEGG: eoj:ECO26_4918 cryptic adenine deaminase; PFAM: amidohydrolase; adenine deaminase 39951 11775095 EKO11_0038 Escherichia coli KO11FL adenine deaminase YP_005275766.1 38185 R 595495 CDS YP_005275767.1 378710874 11775096 40114..41460 1 NC_016902.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: sfx:S3971 hypothetical protein; xanthine/uracil/vitamin C permease 41460 11775096 EKO11_0039 Escherichia coli KO11FL xanthine/uracil/vitamin C permease YP_005275767.1 40114 D 595495 CDS YP_005275768.1 378710875 11779253 41513..41965 1 NC_016902.1 PFAM: protein of unknown function DUF1198; KEGG: ebd:ECBD_0040 protein of unknown function DUF1198; hypothetical protein 41965 11779253 EKO11_0040 Escherichia coli KO11FL hypothetical protein YP_005275768.1 41513 D 595495 CDS YP_005275769.1 378710876 11775097 42011..43366 1 NC_016902.1 KEGG: ebr:ECB_03546 ribonucleoside transporter; manually curated; PFAM: major facilitator superfamily MFS_1; major facilitator superfamily protein 43366 11775097 EKO11_0041 Escherichia coli KO11FL major facilitator superfamily protein YP_005275769.1 42011 D 595495 CDS YP_005275770.1 378710877 11775098 complement(43407..43700) 1 NC_016902.1 KEGG: sbo:SBO_3710 putative transport protein; putative transport protein 43700 11775098 EKO11_0042 Escherichia coli KO11FL putative transport protein YP_005275770.1 43407 R 595495 CDS YP_005275771.1 378710878 11775099 43922..44740 1 NC_016902.1 KEGG: eoh:ECO103_4497 cytoplasmic membrane lipoprotein-28; TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; lipoprotein 44740 11775099 EKO11_0043 Escherichia coli KO11FL lipoprotein YP_005275771.1 43922 D 595495 CDS YP_005275772.1 378710879 11775100 complement(44744..45667) 1 NC_016902.1 KEGG: ebd:ECBD_0045 carboxylate/amino acid/amine transporter; TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; carboxylate/amino acid/amine transporter 45667 11775100 EKO11_0044 Escherichia coli KO11FL carboxylate/amino acid/amine transporter YP_005275772.1 44744 R 595495 CDS YP_005275773.1 378710880 11779254 complement(45778..46962) 1 NC_016902.1 KEGG: ebd:ECBD_0046 sugar efflux transporter; TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; sugar efflux transporter 46962 11779254 EKO11_0045 Escherichia coli KO11FL sugar efflux transporter YP_005275773.1 45778 R 595495 CDS YP_005275774.1 378710881 11775101 complement(47344..47490) 1 NC_016902.1 KEGG: ebd:ECBD_0047 hypothetical protein; hypothetical protein 47490 11775101 EKO11_0046 Escherichia coli KO11FL hypothetical protein YP_005275774.1 47344 R 595495 CDS YP_005275775.1 378710882 11775102 complement(47608..47700) 1 NC_016902.1 hypothetical protein 47700 11775102 EKO11_0047 Escherichia coli KO11FL hypothetical protein YP_005275775.1 47608 R 595495 CDS YP_005275776.1 378710883 11775103 complement(47729..48049) 1 NC_016902.1 PFAM: protein of unknown function DUF1219; KEGG: eay:EAM_3020 hypothetical protein; hypothetical protein 48049 11775103 EKO11_0048 Escherichia coli KO11FL hypothetical protein YP_005275776.1 47729 R 595495 CDS YP_005275777.1 378710884 11775104 complement(48083..48448) 1 NC_016902.1 PFAM: YagBYeeUYfjZ family protein; KEGG: eoh:ECO103_5087 hypothetical protein; YagBYeeUYfjZ family protein 48448 11775104 EKO11_0049 Escherichia coli KO11FL YagBYeeUYfjZ family protein YP_005275777.1 48083 R 595495 CDS YP_005275778.1 378710885 11775105 complement(48480..48701) 1 NC_016902.1 PFAM: protein of unknown function DUF987; KEGG: kpe:KPK_4943 hypothetical protein; hypothetical protein 48701 11775105 EKO11_0050 Escherichia coli KO11FL hypothetical protein YP_005275778.1 48480 R 595495 CDS YP_005275779.1 378710886 11775106 complement(48710..49180) 1 NC_016902.1 KEGG: pay:PAU_03957 hypothetical protein; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein RadC 49180 11775106 EKO11_0051 Escherichia coli KO11FL DNA repair protein RadC YP_005275779.1 48710 R 595495 CDS YP_005275780.1 378710887 11775107 complement(49250..50071) 1 NC_016902.1 KEGG: pay:PAU_03958 hypothetical protein; hypothetical protein 50071 11775107 EKO11_0052 Escherichia coli KO11FL hypothetical protein YP_005275780.1 49250 R 595495 CDS YP_005275781.1 378710888 11775108 complement(50143..50619) 1 NC_016902.1 KEGG: ppr:PBPRA1948 hypothetical protein; hypothetical protein 50619 11775108 EKO11_0053 Escherichia coli KO11FL hypothetical protein YP_005275781.1 50143 R 595495 CDS YP_005275782.1 378710889 11775109 complement(50836..51639) 1 NC_016902.1 KEGG: tva:TVAG_072150 megakaryocyte stimulating factor; hypothetical protein 51639 11775109 EKO11_0054 Escherichia coli KO11FL hypothetical protein YP_005275782.1 50836 R 595495 CDS YP_005275783.1 378710890 11775110 51871..52170 1 NC_016902.1 PFAM: transposase IS3/IS911 family protein; KEGG: cro:ROD_49861 IS3 transposase A; transposase IS3/IS911 family protein 52170 11775110 EKO11_0055 Escherichia coli KO11FL transposase IS3/IS911 family protein YP_005275783.1 51871 D 595495 CDS YP_005275784.1 378710891 11775111 52167..53033 1 NC_016902.1 PFAM: Integrase catalytic region; KEGG: cro:ROD_49871 IS3 transposase B; integrase catalytic subunit 53033 11775111 EKO11_0056 Escherichia coli KO11FL integrase catalytic subunit YP_005275784.1 52167 D 595495 CDS YP_005275785.1 378710892 11775112 complement(53061..53354) 1 NC_016902.1 KEGG: vpo:Kpol_461p11 hypothetical protein; hypothetical protein 53354 11775112 EKO11_0057 Escherichia coli KO11FL hypothetical protein YP_005275785.1 53061 R 595495 CDS YP_005275786.1 378710893 11775113 complement(53757..54917) 1 NC_016902.1 KEGG: cro:ROD_49761 hypothetical protein; hypothetical protein 54917 11775113 EKO11_0058 Escherichia coli KO11FL hypothetical protein YP_005275786.1 53757 R 595495 CDS YP_005275787.1 378710894 11775114 55286..55489 1 NC_016902.1 PFAM: Prophage CP4-57 regulatory; KEGG: pmr:PMI3478 phage regulatory protein; phage transcriptional regulator, AlpA 55489 11775114 EKO11_0059 Escherichia coli KO11FL phage transcriptional regulator, AlpA YP_005275787.1 55286 D 595495 CDS YP_005275788.1 378710895 11779255 55825..56856 1 NC_016902.1 KEGG: alv:Alvin_3272 hypothetical protein; hypothetical protein 56856 11779255 EKO11_0060 Escherichia coli KO11FL hypothetical protein YP_005275788.1 55825 D 595495 CDS YP_005275789.1 378710896 11775115 57550..57984 1 NC_016902.1 KEGG: sbm:Shew185_3245 hypothetical protein; hypothetical protein 57984 11775115 EKO11_0061 Escherichia coli KO11FL hypothetical protein YP_005275789.1 57550 D 595495 CDS YP_005275790.1 378710897 11775116 58392..60092 1 NC_016902.1 KEGG: ppg:PputGB1_4153 SMC domain-containing protein; SMC domain-containing protein 60092 11775116 EKO11_0062 Escherichia coli KO11FL SMC domain-containing protein YP_005275790.1 58392 D 595495 CDS YP_005275791.1 378710898 11775117 60094..61719 1 NC_016902.1 PFAM: UvrD/REP helicase; KEGG: ppg:PputGB1_4154 UvrD/REP helicase; UvrD/REP helicase 61719 11775117 EKO11_0063 Escherichia coli KO11FL UvrD/REP helicase YP_005275791.1 60094 D 595495 CDS YP_005275792.1 378710899 11775118 complement(61815..63038) 1 NC_016902.1 PFAM: integrase family protein; KEGG: plu:plu0125 hypothetical protein; integrase family protein 63038 11775118 EKO11_0064 Escherichia coli KO11FL integrase family protein YP_005275792.1 61815 R 595495 CDS YP_005275793.1 378710900 11775119 63531..64970 1 NC_016902.1 KEGG: sbc:SbBS512_E4108 putative transporter; manually curated; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; sugar (Glycoside-Pentoside-Hexuronide) transporter 64970 11775119 EKO11_0065 Escherichia coli KO11FL sugar (Glycoside-Pentoside-Hexuronide) transporter YP_005275793.1 63531 D 595495 CDS YP_005275794.1 378710901 11775120 64980..67298 1 NC_016902.1 PFAM: glycoside hydrolase family 31; KEGG: efe:EFER_3949 alpha-xylosidase YicI; glycoside hydrolase family protein 67298 11775120 EKO11_0066 Escherichia coli KO11FL glycoside hydrolase family protein YP_005275794.1 64980 D 595495 CDS YP_005275795.1 378710902 11775121 complement(67350..69059) 1 NC_016902.1 PFAM: AsmA family protein; KEGG: ebd:ECBD_0069 AsmA family protein; AsmA family protein 69059 11775121 EKO11_0067 Escherichia coli KO11FL AsmA family protein YP_005275795.1 67350 R 595495 CDS YP_005275796.1 378710903 11775122 complement(69180..70571) 1 NC_016902.1 KEGG: ssn:SSON_3751 putative transport protein; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 70571 11775122 EKO11_0068 Escherichia coli KO11FL uracil-xanthine permease YP_005275796.1 69180 R 595495 CDS YP_005275797.1 378710904 11779257 70851..72056 1 NC_016902.1 KEGG: eok:G2583_4390 glutamate transport protein; TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter; sodium/glutamate symporter 72056 11779257 EKO11_0069 Escherichia coli KO11FL sodium/glutamate symporter YP_005275797.1 70851 D 595495 CDS YP_005275798.1 378710905 11775123 72059..72925 1 NC_016902.1 KEGG: ebd:ECBD_0072 hypothetical protein; hypothetical protein 72925 11775123 EKO11_0070 Escherichia coli KO11FL hypothetical protein YP_005275798.1 72059 D 595495 CDS YP_005275799.1 378710906 11775124 complement(72910..74991) 1 NC_016902.1 TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; KEGG: ssn:SSON_3753 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase domain protein; ATP-dependent DNA helicase RecG 74991 11775124 EKO11_0071 Escherichia coli KO11FL ATP-dependent DNA helicase RecG YP_005275799.1 72910 R 595495 CDS YP_005275800.1 378710907 11775125 complement(74997..75686) 1 NC_016902.1 KEGG: sbo:SBO_3726 tRNA guanosine-2'-O-methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); tRNA guanosine-2'-O-methyltransferase 75686 11775125 EKO11_0072 Escherichia coli KO11FL tRNA guanosine-2'-O-methyltransferase YP_005275800.1 74997 R 595495 CDS YP_005275801.1 378710908 11775126 complement(75693..77801) 1 NC_016902.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: sbc:SbBS512_E4101 bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; (p)ppGpp synthetase I SpoT/RelA 77801 11775126 EKO11_0073 Escherichia coli KO11FL (p)ppGpp synthetase I SpoT/RelA YP_005275801.1 75693 R 595495 CDS YP_005275802.1 378710909 11775127 complement(77820..78095) 1 NC_016902.1 KEGG: cko:CKO_05106 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega 78095 11775127 EKO11_0074 Escherichia coli KO11FL DNA-directed RNA polymerase subunit omega YP_005275802.1 77820 R 595495 CDS YP_005275803.1 378710910 11775128 complement(78150..78773) 1 NC_016902.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: sbc:SbBS512_E4099 guanylate kinase; PFAM: guanylate kinase; guanylate kinase 78773 11775128 EKO11_0075 Escherichia coli KO11FL guanylate kinase YP_005275803.1 78150 R 595495 CDS YP_005275804.1 378710911 11775129 79031..80713 1 NC_016902.1 PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; KEGG: eoi:ECO111_4469 NAD-dependent DNA ligase LigB; SMART: NAD-dependent DNA ligase; DNA ligase (NAD(+)) 80713 11775129 EKO11_0076 Escherichia coli KO11FL DNA ligase (NAD(+)) YP_005275804.1 79031 D 595495 CDS YP_005275805.1 378710912 11775130 complement(80710..81327) 1 NC_016902.1 PFAM: Uncharacterised protein family UPF0126; KEGG: sdy:SDY_4077 hypothetical protein; hypothetical protein 81327 11775130 EKO11_0077 Escherichia coli KO11FL hypothetical protein YP_005275805.1 80710 R 595495 CDS YP_005275806.1 378710913 11775131 complement(81619..82443) 1 NC_016902.1 KEGG: eoi:ECO111_4467 DNA-damage-inducible protein D; DNA-damage-inducible protein D 82443 11775131 EKO11_0078 Escherichia coli KO11FL DNA-damage-inducible protein D YP_005275806.1 81619 R 595495 CDS YP_005275807.1 378710914 11779258 complement(82664..83527) 1 NC_016902.1 PFAM: YicC-like domain-containing protein; domain of unknown function DUF1732; KEGG: ssn:SSON_3762 hypothetical protein; YicC-like domain-containing protein 83527 11779258 EKO11_0079 Escherichia coli KO11FL YicC-like domain-containing protein YP_005275807.1 82664 R 595495 CDS YP_005275808.1 378710915 11775132 83654..84370 1 NC_016902.1 TIGRFAM: ribonuclease PH; KEGG: sbc:SbBS512_E4068 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH 84370 11775132 EKO11_0080 Escherichia coli KO11FL ribonuclease PH YP_005275808.1 83654 D 595495 CDS YP_005275809.1 378710916 11775133 84436..85077 1 NC_016902.1 TIGRFAM: orotate phosphoribosyltransferase; KEGG: sbc:SbBS512_E4067 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 85077 11775133 EKO11_0081 Escherichia coli KO11FL orotate phosphoribosyltransferase YP_005275809.1 84436 D 595495 CDS YP_005275810.1 378710917 11775134 complement(85114..85710) 1 NC_016902.1 PFAM: regulatory protein TetR; KEGG: sdy:SDY_4071 nucleoid occlusion protein; regulatory protein TetR 85710 11775134 EKO11_0082 Escherichia coli KO11FL regulatory protein TetR YP_005275810.1 85114 R 595495 CDS YP_005275811.1 378710918 11775135 complement(85817..86275) 1 NC_016902.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: ebd:ECBD_0086 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 86275 11775135 EKO11_0083 Escherichia coli KO11FL deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_005275811.1 85817 R 595495 CDS YP_005275812.1 378710919 11779259 complement(86253..87473) 1 NC_016902.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: sfx:S4090 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 87473 11779259 EKO11_0084 Escherichia coli KO11FL phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_005275812.1 86253 R 595495 CDS YP_005275813.1 378710920 11775136 87645..88313 1 NC_016902.1 KEGG: sfx:S4091 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein RadC 88313 11775136 EKO11_0085 Escherichia coli KO11FL DNA repair protein RadC YP_005275813.1 87645 D 595495 CDS YP_005275814.1 378710921 11775137 88530..88766 1 NC_016902.1 KEGG: kpu:KP1_5329 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; 50S ribosomal protein L28 88766 11775137 EKO11_0086 Escherichia coli KO11FL 50S ribosomal protein L28 YP_005275814.1 88530 D 595495 CDS YP_005275815.1 378710922 11775138 88787..88954 1 NC_016902.1 KEGG: pam:PANA_3902 RpmG; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; 50S ribosomal protein L33 88954 11775138 EKO11_0087 Escherichia coli KO11FL 50S ribosomal protein L33 YP_005275815.1 88787 D 595495 CDS YP_005275816.1 378710923 11775139 89052..89861 1 NC_016902.1 TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: eoh:ECO103_4547 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 89861 11775139 EKO11_0088 Escherichia coli KO11FL formamidopyrimidine-DNA glycosylase YP_005275816.1 89052 D 595495 CDS YP_005275817.1 378710924 11779260 complement(89900..90379) 1 NC_016902.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: sbc:SbBS512_E4059 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 90379 11779260 EKO11_0089 Escherichia coli KO11FL pantetheine-phosphate adenylyltransferase YP_005275817.1 89900 R 595495 CDS YP_005275818.1 378710925 11775140 complement(90387..91664) 1 NC_016902.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; glycosyl transferase group 1; KEGG: ssn:SSON_3774 3-deoxy-D-manno-octulosonic-acid transferase; three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 91664 11775140 EKO11_0090 Escherichia coli KO11FL three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_005275818.1 90387 R 595495 CDS YP_005275819.1 378710926 11775141 92077..93135 1 NC_016902.1 KEGG: sdy:SDY_4062 lipopolysaccharide core biosynthesis protein; TIGRFAM: lipopolysaccharide heptosyltransferase III; PFAM: glycosyl transferase family 9; lipopolysaccharide heptosyltransferase III 93135 11775141 EKO11_0091 Escherichia coli KO11FL lipopolysaccharide heptosyltransferase III YP_005275819.1 92077 D 595495 CDS YP_005275820.1 378710927 11775142 93132..94256 1 NC_016902.1 PFAM: glycosyl transferase group 1; KEGG: eoh:ECO103_4551 glucosyltransferase I RfaG; group 1 glycosyl transferase 94256 11775142 EKO11_0092 Escherichia coli KO11FL group 1 glycosyl transferase YP_005275820.1 93132 D 595495 CDS YP_005275821.1 378710928 11775143 94249..95046 1 NC_016902.1 KEGG: sdy:SDY_4060 putative LPS biosynthesis enzyme; putative LPS biosynthesis enzyme 95046 11775143 EKO11_0093 Escherichia coli KO11FL putative LPS biosynthesis enzyme YP_005275821.1 94249 D 595495 CDS YP_005275822.1 378710929 11775144 95062..96078 1 NC_016902.1 KEGG: ebd:ECBD_0097 lipopolysaccharide 3-alpha-galactosyltransferase; PFAM: glycosyl transferase family 8; Glycosyl transferase family 8 domain protein; Lipopolysaccharide 3-alpha-galactosyltransferase 96078 11775144 EKO11_0094 Escherichia coli KO11FL Lipopolysaccharide 3-alpha-galactosyltransferase YP_005275822.1 95062 D 595495 CDS YP_005275823.1 378710930 11775145 96095..97090 1 NC_016902.1 KEGG: sbc:SbBS512_E4053 lipopolysaccharide 1,2-glucosyltransferase; PFAM: glycosyl transferase family 8; Glycosyl transferase family 8 domain protein; Lipopolysaccharide glucosyltransferase I 97090 11775145 EKO11_0095 Escherichia coli KO11FL Lipopolysaccharide glucosyltransferase I YP_005275823.1 96095 D 595495 CDS YP_005275824.1 378710931 11775146 97100..97792 1 NC_016902.1 KEGG: sdy:SDY_4057 lipopolysaccharide core biosynthesis protein; lipopolysaccharide core biosynthesis protein 97792 11775146 EKO11_0096 Escherichia coli KO11FL lipopolysaccharide core biosynthesis protein YP_005275824.1 97100 D 595495 CDS YP_005275825.1 378710932 11775147 97818..98846 1 NC_016902.1 KEGG: ssn:SSON_3781 UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase; PFAM: glycosyl transferase family 8; Glycosyl transferase family 8 domain protein; Lipopolysaccharide glucosyltransferase I 98846 11775147 EKO11_0097 Escherichia coli KO11FL Lipopolysaccharide glucosyltransferase I YP_005275825.1 97818 D 595495 CDS YP_005275826.1 378710933 11775148 98928..99911 1 NC_016902.1 PFAM: glycosyl transferase family 2; KEGG: ssn:SSON_3782 putative beta1,3-glucosyltransferase; family 2 glycosyl transferase 99911 11775148 EKO11_0098 Escherichia coli KO11FL family 2 glycosyl transferase YP_005275826.1 98928 D 595495 CDS YP_005275827.1 378710934 11775149 99957..101210 1 NC_016902.1 PFAM: O-antigen polymerase; KEGG: sbc:SbBS512_E4049 O-antigen polymerase; O-antigen polymerase 101210 11775149 EKO11_0099 Escherichia coli KO11FL O-antigen polymerase YP_005275827.1 99957 D 595495 CDS YP_005275828.1 378710935 11775150 complement(101280..102251) 1 NC_016902.1 KEGG: ssn:SSON_3784 ADP-heptose:LPS heptosyl transferase I; TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; lipopolysaccharide heptosyltransferase I 102251 11775150 EKO11_0100 Escherichia coli KO11FL lipopolysaccharide heptosyltransferase I YP_005275828.1 101280 R 595495 CDS YP_005275829.1 378710936 11775151 complement(102255..103301) 1 NC_016902.1 KEGG: sdy:SDY_4052 ADP-heptose:LPS heptosyltransferase II; TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; lipopolysaccharide heptosyltransferase II 103301 11775151 EKO11_0101 Escherichia coli KO11FL lipopolysaccharide heptosyltransferase II YP_005275829.1 102255 R 595495 CDS YP_005275830.1 378710937 11775152 complement(103311..104243) 1 NC_016902.1 KEGG: sbc:SbBS512_E4046 ADP-L-glycero-D-mannoheptose-6-epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; ADP-L-glycero-D-manno-heptose-6-epimerase 104243 11775152 EKO11_0102 Escherichia coli KO11FL ADP-L-glycero-D-manno-heptose-6-epimerase YP_005275830.1 103311 R 595495 CDS YP_005275831.1 378710938 11775153 104457..105653 1 NC_016902.1 TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; KEGG: sfx:S4110 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II; 2-amino-3-ketobutyrate coenzyme A ligase 105653 11775153 EKO11_0103 Escherichia coli KO11FL 2-amino-3-ketobutyrate coenzyme A ligase YP_005275831.1 104457 D 595495 CDS YP_005275832.1 378710939 11779261 105663..106688 1 NC_016902.1 KEGG: sbc:SbBS512_E4044 L-threonine 3-dehydrogenase; TIGRFAM: L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; L-threonine 3-dehydrogenase 106688 11779261 EKO11_0104 Escherichia coli KO11FL L-threonine 3-dehydrogenase YP_005275832.1 105663 D 595495 CDS YP_005275833.1 378710940 11775154 106927..107961 1 NC_016902.1 PFAM: glycosyl transferase family 2; KEGG: eoh:ECO103_4564 putative glycosyl transferase; family 2 glycosyl transferase 107961 11775154 EKO11_0105 Escherichia coli KO11FL family 2 glycosyl transferase YP_005275833.1 106927 D 595495 CDS YP_005275834.1 378710941 11775155 complement(107948..108907) 1 NC_016902.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: ebd:ECBD_0111 protein of unknown function DUF610 YibQ; hypothetical protein 108907 11775155 EKO11_0106 Escherichia coli KO11FL hypothetical protein YP_005275834.1 107948 R 595495 CDS YP_005275835.1 378710942 11775156 complement(108911..110170) 1 NC_016902.1 PFAM: Peptidase M23; KEGG: eok:G2583_4352 hypothetical protein; peptidase M23 110170 11775156 EKO11_0107 Escherichia coli KO11FL peptidase M23 YP_005275835.1 108911 R 595495 CDS YP_005275836.1 378710943 11775157 complement(110204..111892) 1 NC_016902.1 PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; manually curated; KEGG: sbc:SbBS512_E4040 phosphoglyceromutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; phosphoglycerate mutase 111892 11775157 EKO11_0108 Escherichia coli KO11FL phosphoglycerate mutase YP_005275836.1 110204 R 595495 CDS YP_005275837.1 378710944 11775158 111993..112424 1 NC_016902.1 KEGG: sbc:SbBS512_E4039 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 112424 11775158 EKO11_0109 Escherichia coli KO11FL Rhodanese domain-containing protein YP_005275837.1 111993 D 595495 CDS YP_005275838.1 378710945 11775159 112566..112817 1 NC_016902.1 KEGG: sdy:SDY_4043 glutaredoxin 3; TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 3 112817 11775159 EKO11_0110 Escherichia coli KO11FL glutaredoxin 3 YP_005275838.1 112566 D 595495 CDS YP_005275839.1 378710946 11775160 112880..113347 1 NC_016902.1 KEGG: sbc:SbBS512_E4037 preprotein translocase subunit SecB; TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; protein-export protein SecB 113347 11775160 EKO11_0111 Escherichia coli KO11FL protein-export protein SecB YP_005275839.1 112880 D 595495 CDS YP_005275840.1 378710947 11775161 113347..114366 1 NC_016902.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: sdy:SDY_4041 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein 114366 11775161 EKO11_0112 Escherichia coli KO11FL NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein YP_005275840.1 113347 D 595495 CDS YP_005275841.1 378710948 11775162 114446..115267 1 NC_016902.1 TIGRFAM: serine O-acetyltransferase; KEGG: sdy:SDY_4040 serine acetyltransferase; serine O-acetyltransferase 115267 11775162 EKO11_0113 Escherichia coli KO11FL serine O-acetyltransferase YP_005275841.1 114446 D 595495 CDS YP_005275842.1 378710949 11775163 complement(115320..115793) 1 NC_016902.1 KEGG: ebw:BWG_3297 putative tRNA/rRNA methyltransferase YibK; TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); TrmH family RNA methyltransferase 115793 11775163 EKO11_0114 Escherichia coli KO11FL TrmH family RNA methyltransferase YP_005275842.1 115320 R 595495 CDS YP_005275843.1 378710950 11775164 complement(115948..117138) 1 NC_016902.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ssn:SSON_3800 L-lactate dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 117138 11775164 EKO11_0115 Escherichia coli KO11FL FMN-dependent alpha-hydroxy acid dehydrogenase YP_005275843.1 115948 R 595495 CDS YP_005275844.1 378710951 11775165 complement(117135..117911) 1 NC_016902.1 KEGG: sbo:SBO_3609 DNA-binding transcriptional repressor LldR; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 117911 11775165 EKO11_0116 Escherichia coli KO11FL GntR family transcriptional regulator YP_005275844.1 117135 R 595495 CDS YP_005275845.1 378710952 11775166 complement(117911..119566) 1 NC_016902.1 KEGG: eoh:ECO103_4576 L-lactate permease; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 119566 11775166 EKO11_0117 Escherichia coli KO11FL L-lactate transport YP_005275845.1 117911 R 595495 CDS YP_005275846.1 378710953 11779262 complement(119935..124785) 1 NC_016902.1 PFAM: YadA domain-containing protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: eoh:ECO103_4577 putative adhesin; YadA domain-containing protein 124785 11779262 EKO11_0118 Escherichia coli KO11FL YadA domain-containing protein YP_005275846.1 119935 R 595495 CDS YP_005275847.1 378710954 11779263 complement(124829..125512) 1 NC_016902.1 KEGG: sfv:SFV_3931 putative inner membrane lipoprotein; putative inner membrane lipoprotein 125512 11779263 EKO11_0119 Escherichia coli KO11FL putative inner membrane lipoprotein YP_005275847.1 124829 R 595495 CDS YP_005275848.1 378710955 11775167 complement(126056..126418) 1 NC_016902.1 KEGG: sbc:SbBS512_E4020 hypothetical protein; hypothetical protein 126418 11775167 EKO11_0120 Escherichia coli KO11FL hypothetical protein YP_005275848.1 126056 R 595495 CDS YP_005275849.1 378710956 11775168 126703..126912 1 NC_016902.1 KEGG: sbc:SbBS512_E4019 hypothetical protein; hypothetical protein 126912 11775168 EKO11_0121 Escherichia coli KO11FL hypothetical protein YP_005275849.1 126703 D 595495 CDS YP_005275850.1 378710957 11775169 complement(126924..127511) 1 NC_016902.1 PFAM: Mannitol repressor; KEGG: ssn:SSON_3807 mannitol repressor protein; mannitol repressor, MtlR 127511 11775169 EKO11_0122 Escherichia coli KO11FL mannitol repressor, MtlR YP_005275850.1 126924 R 595495 CDS YP_005275851.1 378710958 11775170 complement(127511..128659) 1 NC_016902.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfv:SFV_3937 mannitol-1-phosphate 5-dehydrogenase; mannitol dehydrogenase domain-containing protein 128659 11775170 EKO11_0123 Escherichia coli KO11FL mannitol dehydrogenase domain-containing protein YP_005275851.1 127511 R 595495 CDS YP_005275852.1 378710959 11775171 complement(128889..130802) 1 NC_016902.1 KEGG: sbc:SbBS512_E4016 PTS system, mannitol-specific IIABC component; TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit; PTS system mannitol-specific transporter subunit IIC 130802 11775171 EKO11_0124 Escherichia coli KO11FL PTS system mannitol-specific transporter subunit IIC YP_005275852.1 128889 R 595495 CDS YP_005275853.1 378710960 11775172 131339..131701 1 NC_016902.1 KEGG: sbc:SbBS512_E4015 hypothetical protein; hypothetical protein 131701 11775172 EKO11_0125 Escherichia coli KO11FL hypothetical protein YP_005275853.1 131339 D 595495 CDS YP_005275854.1 378710961 11775173 131704..132840 1 NC_016902.1 PFAM: secretion protein HlyD family protein; KEGG: ebd:ECBD_0131 secretion protein HlyD family protein; secretion protein HlyD family protein 132840 11775173 EKO11_0126 Escherichia coli KO11FL secretion protein HlyD family protein YP_005275854.1 131704 D 595495 CDS YP_005275855.1 378710962 11775174 complement(133300..133737) 1 NC_016902.1 manually curated; KEGG: eoh:ECO103_4586 hypothetical protein; hypothetical protein 133737 11775174 EKO11_0127 Escherichia coli KO11FL hypothetical protein YP_005275855.1 133300 R 595495 CDS YP_005275856.1 378710963 11775175 complement(134444..134905) 1 NC_016902.1 KEGG: ebw:BWG_3285 hypothetical protein; hypothetical protein 134905 11775175 EKO11_0128 Escherichia coli KO11FL hypothetical protein YP_005275856.1 134444 R 595495 CDS YP_005275857.1 378710964 11775176 complement(134917..135855) 1 NC_016902.1 PFAM: RHS protein; KEGG: ebd:ECBD_0135 rhs protein; RHS protein 135855 11775176 EKO11_0129 Escherichia coli KO11FL RHS protein YP_005275857.1 134917 R 595495 CDS YP_005275858.1 378710965 11775177 complement(135903..136745) 1 NC_016902.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: ebd:ECBD_0136 hypothetical protein; PBS lyase HEAT domain-containing protein repeat-containing protein 136745 11775177 EKO11_0130 Escherichia coli KO11FL PBS lyase HEAT domain-containing protein repeat-containing protein YP_005275858.1 135903 R 595495 CDS YP_005275859.1 378710966 11775178 complement(136850..137233) 1 NC_016902.1 KEGG: eoh:ECO103_4590 hypothetical protein; hypothetical protein 137233 11775178 EKO11_0131 Escherichia coli KO11FL hypothetical protein YP_005275859.1 136850 R 595495 CDS YP_005275860.1 378710967 11775179 complement(137205..141440) 1 NC_016902.1 KEGG: eoi:ECO111_4290 RhsB core protein with extension; TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein 141440 11775179 EKO11_0132 Escherichia coli KO11FL YD repeat protein YP_005275860.1 137205 R 595495 CDS YP_005275861.1 378710968 11775180 141669..142277 1 NC_016902.1 PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E4007 putative glutathione S-transferase; glutathione S-transferase 142277 11775180 EKO11_0133 Escherichia coli KO11FL glutathione S-transferase YP_005275861.1 141669 D 595495 CDS YP_005275862.1 378710969 11775181 142375..143766 1 NC_016902.1 TIGRFAM: L-seryl-tRNA selenium transferase; KEGG: ebd:ECBD_0139 selenocysteine synthase; PFAM: Pyridoxal phosphate-dependent transferase; L-seryl-tRNA selenium transferase 143766 11775181 EKO11_0134 Escherichia coli KO11FL L-seryl-tRNA selenium transferase YP_005275862.1 142375 D 595495 CDS YP_005275863.1 378710970 11775182 143763..145607 1 NC_016902.1 KEGG: eoi:ECO111_4410 selenocysteinyl-tRNA-specific translation factor; TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; selenocysteine-specific translation elongation factor 145607 11775182 EKO11_0135 Escherichia coli KO11FL selenocysteine-specific translation elongation factor YP_005275863.1 143763 D 595495 CDS YP_005275864.1 378710971 11775183 145797..146948 1 NC_016902.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: eoh:ECO103_4645 putative alcohol dehydrogenase; iron-containing alcohol dehydrogenase 146948 11775183 EKO11_0136 Escherichia coli KO11FL iron-containing alcohol dehydrogenase YP_005275864.1 145797 D 595495 CDS YP_005275865.1 378710972 11775184 147113..148651 1 NC_016902.1 PFAM: Aldehyde Dehydrogenase; KEGG: sbc:SbBS512_E4003 aldehyde dehydrogenase B; Aldehyde Dehydrogenase 148651 11775184 EKO11_0137 Escherichia coli KO11FL Aldehyde Dehydrogenase YP_005275865.1 147113 D 595495 CDS YP_005275866.1 378710973 11775185 complement(148870..149082) 1 NC_016902.1 KEGG: sfv:SFV_3946 hypothetical protein; hypothetical protein 149082 11775185 EKO11_0138 Escherichia coli KO11FL hypothetical protein YP_005275866.1 148870 R 595495 CDS YP_005275867.1 378710974 11775186 149196..149519 1 NC_016902.1 KEGG: eoh:ECO103_4647 hypothetical protein; hypothetical protein 149519 11775186 EKO11_0139 Escherichia coli KO11FL hypothetical protein YP_005275867.1 149196 D 595495 CDS YP_005275868.1 378710975 11779264 149525..150661 1 NC_016902.1 PFAM: secretion protein HlyD family protein; KEGG: eoh:ECO103_4648 membrane fusion protein (MFP) component of efflux pump, signal anchor; secretion protein HlyD family protein 150661 11779264 EKO11_0140 Escherichia coli KO11FL secretion protein HlyD family protein YP_005275868.1 149525 D 595495 CDS YP_005275869.1 378710976 11775187 complement(150658..151632) 1 NC_016902.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eok:G2583_4320 transcriptional regulator; LysR family transcriptional regulator 151632 11775187 EKO11_0141 Escherichia coli KO11FL LysR family transcriptional regulator YP_005275869.1 150658 R 595495 CDS YP_005275870.1 378710977 11775188 151756..152496 1 NC_016902.1 PFAM: MltA-interacting MipA family protein; KEGG: sfv:SFV_3952 putative outer membrane protein; MltA-interacting MipA family protein 152496 11775188 EKO11_0142 Escherichia coli KO11FL MltA-interacting MipA family protein YP_005275870.1 151756 D 595495 CDS YP_005275871.1 378710978 11775189 complement(152843..153538) 1 NC_016902.1 KEGG: ebd:ECBD_0151 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; L-ribulose-5-phosphate 4-epimerase 153538 11775189 EKO11_0143 Escherichia coli KO11FL L-ribulose-5-phosphate 4-epimerase YP_005275871.1 152843 R 595495 CDS YP_005275872.1 378710979 11775190 complement(153532..154392) 1 NC_016902.1 TIGRFAM: hexulose-6-phosphate isomerase; KEGG: ebw:BWG_3272 putative L-xylulose 5-phosphate 3-epimerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; hexulose-6-phosphate isomerase 154392 11775190 EKO11_0144 Escherichia coli KO11FL hexulose-6-phosphate isomerase YP_005275872.1 153532 R 595495 CDS YP_005275873.1 378710980 11775191 complement(154385..155047) 1 NC_016902.1 PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: eoh:ECO103_4653 3-keto-L-gulonate-6-phosphate decarboxylase; Orotidine 5'-phosphate decarboxylase 155047 11775191 EKO11_0145 Escherichia coli KO11FL Orotidine 5'-phosphate decarboxylase YP_005275873.1 154385 R 595495 CDS YP_005275874.1 378710981 11779265 complement(155044..156540) 1 NC_016902.1 PFAM: Carbohydrate kinase, FGGY-like; KEGG: eoh:ECO103_4654 L-xylulose kinase; Carbohydrate kinase, FGGY-like protein 156540 11779265 EKO11_0146 Escherichia coli KO11FL Carbohydrate kinase, FGGY-like protein YP_005275874.1 155044 R 595495 CDS YP_005275875.1 378710982 11779266 complement(156544..157530) 1 NC_016902.1 KEGG: sfv:SFV_3960 putative solute-binding transport protein; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter subunit DctP 157530 11779266 EKO11_0147 Escherichia coli KO11FL TRAP dicarboxylate transporter subunit DctP YP_005275875.1 156544 R 595495 CDS YP_005275876.1 378710983 11775192 complement(157543..158820) 1 NC_016902.1 KEGG: ebd:ECBD_0156 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 158820 11775192 EKO11_0148 Escherichia coli KO11FL TRAP dicarboxylate transporter subunit DctM YP_005275876.1 157543 R 595495 CDS YP_005275877.1 378710984 11775193 complement(158823..159296) 1 NC_016902.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sbc:SbBS512_E3945 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; tripartite AtP-independent periplasmic transporter subunit DctQ 159296 11775193 EKO11_0149 Escherichia coli KO11FL tripartite AtP-independent periplasmic transporter subunit DctQ YP_005275877.1 158823 R 595495 CDS YP_005275878.1 378710985 11775194 complement(159414..159881) 1 NC_016902.1 PFAM: Conserved hypothetical protein CHP00022; KEGG: eoh:ECO103_4658 hypothetical protein; hypothetical protein 159881 11775194 EKO11_0150 Escherichia coli KO11FL hypothetical protein YP_005275878.1 159414 R 595495 CDS YP_005275879.1 378710986 11775195 complement(159893..160891) 1 NC_016902.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: sfx:S4150 2,3-diketo-L-gulonate reductase; malate/L-lactate dehydrogenase 160891 11775195 EKO11_0151 Escherichia coli KO11FL malate/L-lactate dehydrogenase YP_005275879.1 159893 R 595495 CDS YP_005275880.1 378710987 11775196 161092..161940 1 NC_016902.1 KEGG: sbo:SBO_3582 putative regulator; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; IclR family transcriptional regulator 161940 11775196 EKO11_0152 Escherichia coli KO11FL IclR family transcriptional regulator YP_005275880.1 161092 D 595495 CDS YP_005275881.1 378710988 11775197 162042..162515 1 NC_016902.1 KEGG: sbo:SBO_3581 hypothetical protein; hypothetical protein 162515 11775197 EKO11_0153 Escherichia coli KO11FL hypothetical protein YP_005275881.1 162042 D 595495 CDS YP_005275882.1 378710989 11775198 complement(162666..164024) 1 NC_016902.1 KEGG: sfv:SFV_3968 valine--pyruvate transaminase; manually curated; PFAM: aminotransferase class I and II; class I and II aminotransferase 164024 11775198 EKO11_0154 Escherichia coli KO11FL class I and II aminotransferase YP_005275882.1 162666 R 595495 CDS YP_005275883.1 378710990 11775199 complement(164097..166127) 1 NC_016902.1 KEGG: eoh:ECO103_4663 periplasmic alpha-amylase precursor; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; alpha amylase 166127 11775199 EKO11_0155 Escherichia coli KO11FL alpha amylase YP_005275883.1 164097 R 595495 CDS YP_005275884.1 378710991 11775200 166447..167271 1 NC_016902.1 KEGG: sbc:SbBS512_E3952 hypothetical protein; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 167271 11775200 EKO11_0156 Escherichia coli KO11FL mannosyl-glycoprotein endo-beta-N-acetylglucosamidase YP_005275884.1 166447 D 595495 CDS YP_005275885.1 378710992 11779267 complement(167379..168557) 1 NC_016902.1 KEGG: sbc:SbBS512_E3953 xylose operon regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 168557 11779267 EKO11_0157 Escherichia coli KO11FL AraC family transcriptional regulator YP_005275885.1 167379 R 595495 CDS YP_005275886.1 378710993 11775201 complement(168635..169816) 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3954 D-xylose ABC transporter, permease protein; inner-membrane translocator 169816 11775201 EKO11_0158 Escherichia coli KO11FL inner-membrane translocator YP_005275886.1 168635 R 595495 CDS YP_005275887.1 378710994 11775202 complement(169794..171335) 1 NC_016902.1 TIGRFAM: D-xylose ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: eoh:ECO103_4667 xylose transporter ATP-binding subunit; SMART: AAA ATPase; D-xylose ABC transporter ATPase 171335 11775202 EKO11_0159 Escherichia coli KO11FL D-xylose ABC transporter ATPase YP_005275887.1 169794 R 595495 CDS YP_005275888.1 378710995 11775203 complement(171413..172405) 1 NC_016902.1 KEGG: eoh:ECO103_4668 D-xylose transporter subunit XylF; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; D-xylose ABC transporter periplasmic substrate-binding protein 172405 11775203 EKO11_0160 Escherichia coli KO11FL D-xylose ABC transporter periplasmic substrate-binding protein YP_005275888.1 171413 R 595495 CDS YP_005275889.1 378710996 11779268 172771..174093 1 NC_016902.1 TIGRFAM: xylose isomerase; KEGG: ebd:ECBD_0169 xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; xylose isomerase 174093 11779268 EKO11_0161 Escherichia coli KO11FL xylose isomerase YP_005275889.1 172771 D 595495 CDS YP_005275890.1 378710997 11775204 174165..175619 1 NC_016902.1 KEGG: eoh:ECO103_4670 xylulokinase XylB; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; xylulokinase 175619 11775204 EKO11_0162 Escherichia coli KO11FL xylulokinase YP_005275890.1 174165 D 595495 CDS YP_005275891.1 378710998 11775205 175788..176129 1 NC_016902.1 PFAM: YiaAB two helix domain-containing protein; KEGG: sbo:SBO_3571 hypothetical protein; YiaAB two helix domain-containing protein 176129 11775205 EKO11_0163 Escherichia coli KO11FL YiaAB two helix domain-containing protein YP_005275891.1 175788 D 595495 CDS YP_005275892.1 378710999 11775206 176175..176612 1 NC_016902.1 PFAM: YiaAB two helix domain-containing protein; KEGG: eoh:ECO103_4672 hypothetical protein; YiaAB two helix domain-containing protein 176612 11775206 EKO11_0164 Escherichia coli KO11FL YiaAB two helix domain-containing protein YP_005275892.1 176175 D 595495 CDS YP_005275893.1 378711000 11775207 complement(176654..177649) 1 NC_016902.1 PFAM: acyltransferase 3; KEGG: sfv:SFV_3979 hypothetical protein; acyltransferase 3 177649 11775207 EKO11_0165 Escherichia coli KO11FL acyltransferase 3 YP_005275893.1 176654 R 595495 CDS YP_005275894.1 378711001 11779269 177824..178123 1 NC_016902.1 KEGG: sbc:SbBS512_E3964 hypothetical protein; hypothetical protein 178123 11779269 EKO11_0166 Escherichia coli KO11FL hypothetical protein YP_005275894.1 177824 D 595495 CDS YP_005275895.1 378711002 11779270 178218..179129 1 NC_016902.1 TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: cko:CKO_05016 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha 179129 11779270 EKO11_0167 Escherichia coli KO11FL glycyl-tRNA synthetase subunit alpha YP_005275895.1 178218 D 595495 CDS YP_005275896.1 378711003 11775208 179139..181208 1 NC_016902.1 TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: ssn:SSON_3830 glycyl-tRNA synthetase subunit beta; glycyl-tRNA synthetase subunit beta 181208 11775208 EKO11_0168 Escherichia coli KO11FL glycyl-tRNA synthetase subunit beta YP_005275896.1 179139 D 595495 CDS YP_005275897.1 378711004 11775209 181509..182030 1 NC_016902.1 KEGG: sfx:S1483 IS103 orf; transposase 182030 11775209 EKO11_0169 Escherichia coli KO11FL transposase YP_005275897.1 181509 D 595495 CDS YP_005275898.1 378711005 11775210 182027..182878 1 NC_016902.1 KEGG: ebd:ECBD_4284 integrase catalytic region; manually curated; PFAM: Integrase catalytic region; integrase catalytic subunit 182878 11775210 EKO11_0170 Escherichia coli KO11FL integrase catalytic subunit YP_005275898.1 182027 D 595495 CDS YP_005275899.1 378711006 11775211 182920..183216 1 NC_016902.1 PFAM: Hok/gef cell toxic protein; KEGG: eok:G2583_4299 small toxic polypeptide; Hok/gef cell toxic protein 183216 11775211 EKO11_0171 Escherichia coli KO11FL Hok/gef cell toxic protein YP_005275899.1 182920 D 595495 CDS YP_005275900.1 378711007 11775212 complement(183320..183532) 1 NC_016902.1 KEGG: cko:CKO_05012 major cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock protein 183532 11775212 EKO11_0172 Escherichia coli KO11FL cold-shock protein YP_005275900.1 183320 R 595495 CDS YP_005275901.1 378711008 11775213 complement(183813..184103) 1 NC_016902.1 KEGG: sdy:SDY_4348 putative transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; transcriptional regulator, XRE family 184103 11775213 EKO11_0173 Escherichia coli KO11FL transcriptional regulator, XRE family YP_005275901.1 183813 R 595495 CDS YP_005275902.1 378711009 11775214 184537..185247 1 NC_016902.1 KEGG: eoh:ECO103_4680 hypothetical protein; hypothetical protein 185247 11775214 EKO11_0174 Escherichia coli KO11FL hypothetical protein YP_005275902.1 184537 D 595495 CDS YP_005275903.1 378711010 11775215 complement(185297..186271) 1 NC_016902.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sbc:SbBS512_E3973 2-ketogluconate reductase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 186271 11775215 EKO11_0175 Escherichia coli KO11FL D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_005275903.1 185297 R 595495 CDS YP_005275904.1 378711011 11775216 complement(186375..187034) 1 NC_016902.1 PFAM: OmpA/MotB domain protein; KEGG: eok:G2583_4294 inner membrane lipoprotein YiaD precursor; OmpA/MotB domain-containing protein 187034 11775216 EKO11_0176 Escherichia coli KO11FL OmpA/MotB domain-containing protein YP_005275904.1 186375 R 595495 CDS YP_005275905.1 378711012 11775217 187187..189520 1 NC_016902.1 TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; KEGG: eoh:ECO103_4683 biotin sulfoxide reductase BisC; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 189520 11775217 EKO11_0177 Escherichia coli KO11FL molybdopterin guanine dinucleotide-containing S/N-oxide reductase YP_005275905.1 187187 D 595495 CDS YP_005275906.1 378711013 11775218 complement(189489..189929) 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSON_3840 hypothetical protein; N-acetyltransferase GCN5 189929 11775218 EKO11_0178 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005275906.1 189489 R 595495 CDS YP_005275907.1 378711014 11775219 complement(189926..190489) 1 NC_016902.1 TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: ssn:SSON_3841 3-methyl-adenine DNA glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 190489 11775219 EKO11_0179 Escherichia coli KO11FL DNA-3-methyladenine glycosylase I YP_005275907.1 189926 R 595495 CDS YP_005275908.1 378711015 11775220 190647..191345 1 NC_016902.1 KEGG: sbc:SbBS512_E3978 hypothetical protein; hypothetical protein 191345 11775220 EKO11_0180 Escherichia coli KO11FL hypothetical protein YP_005275908.1 190647 D 595495 CDS YP_005275909.1 378711016 11775221 191574..192776 1 NC_016902.1 KEGG: ssn:SSON_3843 putative resistance protein; TIGRFAM: Oxalate/Formate Antiporter; PFAM: major facilitator superfamily MFS_1; Oxalate/Formate Antiporter 192776 11775221 EKO11_0181 Escherichia coli KO11FL Oxalate/Formate Antiporter YP_005275909.1 191574 D 595495 CDS YP_005275910.1 378711017 11775222 193100..193624 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eoh:ECO103_4688 putative major fimbrial subunit; fimbrial protein domain-containing protein 193624 11775222 EKO11_0182 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005275910.1 193100 D 595495 CDS YP_005275911.1 378711018 11779271 193708..194394 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: eoi:ECO111_4365 putative fimbrial chaperone protein; Pili assembly chaperone, N-terminal protein 194394 11779271 EKO11_0183 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005275911.1 193708 D 595495 CDS YP_005275912.1 378711019 11775223 194418..196949 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoh:ECO103_4690 putative fimbrial usher protein; fimbrial biogenesis outer membrane usher protein 196949 11775223 EKO11_0184 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005275912.1 194418 D 595495 CDS YP_005275913.1 378711020 11775224 196960..198015 1 NC_016902.1 KEGG: eoh:ECO103_4691 putative minor fimbrial subunit; putative minor fimbrial subunit 198015 11775224 EKO11_0185 Escherichia coli KO11FL putative minor fimbrial subunit YP_005275913.1 196960 D 595495 CDS YP_005275914.1 378711021 11779272 198021..198545 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sbc:SbBS512_E3982 protein LpfE; fimbrial protein domain-containing protein 198545 11779272 EKO11_0186 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005275914.1 198021 D 595495 CDS YP_005275915.1 378711022 11775225 198798..200489 1 NC_016902.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: sbc:SbBS512_E3983 phosphoethanolamine transferase; sulfatase 200489 11775225 EKO11_0187 Escherichia coli KO11FL sulfatase YP_005275915.1 198798 D 595495 CDS YP_005275916.1 378711023 11775227 201570..203177 1 NC_016902.1 PFAM: extracellular solute-binding protein family 5; KEGG: ebd:ECBD_0192 extracellular solute-binding protein family 5; family 5 extracellular solute-binding protein 203177 11775227 EKO11_0188 Escherichia coli KO11FL family 5 extracellular solute-binding protein YP_005275916.1 201570 D 595495 CDS YP_005275917.1 378711024 11775228 complement(203240..203467) 1 NC_016902.1 manually curated; KEGG: sbc:SbBS512_E3987 hypothetical protein; hypothetical protein 203467 11775228 EKO11_0189 Escherichia coli KO11FL hypothetical protein YP_005275917.1 203240 R 595495 CDS YP_005275918.1 378711025 11775229 203485..204504 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eoi:ECO111_4359 dipeptide transporter permease DppB; binding-protein-dependent transport system inner membrane protein 204504 11775229 EKO11_0190 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005275918.1 203485 D 595495 CDS YP_005275919.1 378711026 11775230 204514..205416 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efe:EFER_3539 dipeptide transporter; binding-protein-dependent transport system inner membrane protein 205416 11775230 EKO11_0191 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005275919.1 204514 D 595495 CDS YP_005275920.1 378711027 11775231 205427..206410 1 NC_016902.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: sbo:SBO_3540 dipeptide transporter ATP-binding subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 206410 11775231 EKO11_0192 Escherichia coli KO11FL oligopeptide/dipeptide ABC transporter ATPase YP_005275920.1 205427 D 595495 CDS YP_005275921.1 378711028 11775232 206407..207411 1 NC_016902.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: eoi:ECO111_4356 dipeptide transporter ATP-binding subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 207411 11775232 EKO11_0193 Escherichia coli KO11FL oligopeptide/dipeptide ABC transporter ATPase YP_005275921.1 206407 D 595495 CDS YP_005275922.1 378711029 11775233 complement(207441..208712) 1 NC_016902.1 TIGRFAM: serine transporter; KEGG: sbc:SbBS512_E3992 serine transporter family protein; serine transporter 208712 11775233 EKO11_0194 Escherichia coli KO11FL serine transporter YP_005275922.1 207441 R 595495 CDS YP_005275923.1 378711030 11775235 209188..209295 1 NC_016902.1 KEGG: sbc:SbBS512_E3995 hypothetical protein; hypothetical protein 209295 11775235 EKO11_0196 Escherichia coli KO11FL hypothetical protein YP_005275923.1 209188 D 595495 CDS YP_005275924.1 378711031 11775236 complement(209300..209599) 1 NC_016902.1 manually curated; KEGG: spq:SPAB_04504 hypothetical protein; hypothetical protein 209599 11775236 EKO11_0197 Escherichia coli KO11FL hypothetical protein YP_005275924.1 209300 R 595495 CDS YP_005275925.1 378711032 11775237 209671..209778 1 NC_016902.1 KEGG: sbc:SbBS512_E3995 hypothetical protein; hypothetical protein 209778 11775237 EKO11_0198 Escherichia coli KO11FL hypothetical protein YP_005275925.1 209671 D 595495 CDS YP_005275926.1 378711033 11775239 209986..210261 1 NC_016902.1 manually curated; KEGG: sfl:SF3572 hypothetical protein; hypothetical protein 210261 11775239 EKO11_0200 Escherichia coli KO11FL hypothetical protein YP_005275926.1 209986 D 595495 CDS YP_005275927.1 378711034 11775240 complement(210348..212027) 1 NC_016902.1 TIGRFAM: cellulose synthase operon protein YhjU; KEGG: eok:G2583_4274 hypothetical protein; cellulose synthase operon protein YhjU 212027 11775240 EKO11_0201 Escherichia coli KO11FL cellulose synthase operon protein YhjU YP_005275927.1 210348 R 595495 CDS YP_005275928.1 378711035 11775241 complement(212024..212215) 1 NC_016902.1 TIGRFAM: celllulose biosynthesis operon protein BcsF/YhjT; KEGG: sbc:SbBS512_E3999 cellulose biosynthesis protein BcsF; celllulose biosynthesis operon protein BcsF/YhjT 212215 11775241 EKO11_0202 Escherichia coli KO11FL celllulose biosynthesis operon protein BcsF/YhjT YP_005275928.1 212024 R 595495 CDS YP_005275929.1 378711036 11775242 complement(212212..213771) 1 NC_016902.1 TIGRFAM: cellulose biosynthesis protein BcsE; KEGG: ebr:ECB_03384 hypothetical protein; cellulose biosynthesis protein BcsE 213771 11775242 EKO11_0203 Escherichia coli KO11FL cellulose biosynthesis protein BcsE YP_005275929.1 212212 R 595495 CDS YP_005275930.1 378711037 11775243 214056..214244 1 NC_016902.1 KEGG: sbo:SBO_3534 hypothetical protein; hypothetical protein 214244 11775243 EKO11_0204 Escherichia coli KO11FL hypothetical protein YP_005275930.1 214056 D 595495 CDS YP_005275931.1 378711038 11775244 214256..215008 1 NC_016902.1 KEGG: eok:G2583_4270 ATPases involved in chromosome partitioning; TIGRFAM: cellulose synthase operon protein YhjQ; PFAM: Cellulose synthase operon protein YhjQ; cellulose synthase operon protein YhjQ 215008 11775244 EKO11_0205 Escherichia coli KO11FL cellulose synthase operon protein YhjQ YP_005275931.1 214256 D 595495 CDS YP_005275932.1 378711039 11775245 215005..217623 1 NC_016902.1 KEGG: ebd:ECBD_0206 cellulose synthase catalytic subunit; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ; cellulose synthase catalytic subunit 217623 11775245 EKO11_0206 Escherichia coli KO11FL cellulose synthase catalytic subunit YP_005275932.1 215005 D 595495 CDS YP_005275933.1 378711040 11779273 217670..219973 1 NC_016902.1 PFAM: Cellulose synthase BcsB; KEGG: ebd:ECBD_0207 cellulose synthase regulator protein; Cellulose synthase BcsB 219973 11779273 EKO11_0207 Escherichia coli KO11FL Cellulose synthase BcsB YP_005275933.1 217670 D 595495 CDS YP_005275934.1 378711041 11775246 219980..221086 1 NC_016902.1 KEGG: eoh:ECO103_4259 endo-1,4-D-glucanase; PFAM: glycoside hydrolase family 8; cellulase 221086 11775246 EKO11_0208 Escherichia coli KO11FL cellulase YP_005275934.1 219980 D 595495 CDS YP_005275935.1 378711042 11775247 221068..224541 1 NC_016902.1 PFAM: cellulose synthase operon C domain protein; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: eok:G2583_4266 cellulose synthase operon protein C; cellulose synthase operon C domain-containing protein 224541 11775247 EKO11_0209 Escherichia coli KO11FL cellulose synthase operon C domain-containing protein YP_005275935.1 221068 D 595495 CDS YP_005275936.1 378711043 11775248 224662..226611 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; KEGG: sbc:SbBS512_E3935 putative phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase with extracellular sensor 226611 11775248 EKO11_0210 Escherichia coli KO11FL diguanylate cyclase/phosphodiesterase with extracellular sensor YP_005275936.1 224662 D 595495 CDS YP_005275937.1 378711044 11775249 226794..228080 1 NC_016902.1 PFAM: sodium:dicarboxylate symporter; KEGG: sbc:SbBS512_E3934 C4-dicarboxylate transporter DctA; sodium:dicarboxylate symporter 228080 11775249 EKO11_0211 Escherichia coli KO11FL sodium:dicarboxylate symporter YP_005275937.1 226794 D 595495 CDS YP_005275938.1 378711045 11779274 228301..229797 1 NC_016902.1 PFAM: peptidase M16 domain protein; KEGG: sdy:SDY_4547 hypothetical protein; peptidase M16 domain-containing protein 229797 11779274 EKO11_0212 Escherichia coli KO11FL peptidase M16 domain-containing protein YP_005275938.1 228301 D 595495 CDS YP_005275939.1 378711046 11775250 complement(229893..230822) 1 NC_016902.1 PFAM: PfkB domain protein; KEGG: eoh:ECO103_4254 ketodeoxygluconokinase KdgK; PfkB domain-containing protein 230822 11775250 EKO11_0213 Escherichia coli KO11FL PfkB domain-containing protein YP_005275939.1 229893 R 595495 CDS YP_005275940.1 378711047 11775251 231054..231821 1 NC_016902.1 KEGG: sdy:SDY_4545 EAL domain-containing protein; PFAM: EAL domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase 231821 11775251 EKO11_0214 Escherichia coli KO11FL diguanylate phosphodiesterase YP_005275940.1 231054 D 595495 CDS YP_005275941.1 378711048 11775252 231891..233951 1 NC_016902.1 PFAM: AsmA family protein; KEGG: sbc:SbBS512_E3929 AsmA family protein; AsmA family protein 233951 11775252 EKO11_0215 Escherichia coli KO11FL AsmA family protein YP_005275941.1 231891 D 595495 CDS YP_005275942.1 378711049 11775253 complement(234185..235507) 1 NC_016902.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); KEGG: eoh:ECO103_4251 putative transporter; metabolite/H+ symporter, major facilitator superfamily (MFS) 235507 11775253 EKO11_0216 Escherichia coli KO11FL metabolite/H+ symporter, major facilitator superfamily (MFS) YP_005275942.1 234185 R 595495 CDS YP_005275943.1 378711050 11775254 complement(235918..236931) 1 NC_016902.1 KEGG: sbc:SbBS512_E3927 putative ribonuclease; TIGRFAM: ribonuclease; PFAM: ribonuclease BN; ribonuclease 236931 11775254 EKO11_0217 Escherichia coli KO11FL ribonuclease YP_005275943.1 235918 R 595495 CDS YP_005275944.1 378711051 11775255 complement(236980..237951) 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eoh:ECO103_4249 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 237951 11775255 EKO11_0218 Escherichia coli KO11FL LysR family transcriptional regulator YP_005275944.1 236980 R 595495 CDS YP_005275945.1 378711052 11779275 238399..239001 1 NC_016902.1 KEGG: eoh:ECO103_4248 putative DNA-binding response regulator in two-component regulatory system; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 239001 11779275 EKO11_0219 Escherichia coli KO11FL LuxR family transcriptional regulator YP_005275945.1 238399 D 595495 CDS YP_005275946.1 378711053 11775256 complement(239052..240701) 1 NC_016902.1 KEGG: ssn:SSON_3567 trehalase; PFAM: glycoside hydrolase family 37; Alpha,alpha-trehalase 240701 11775256 EKO11_0220 Escherichia coli KO11FL Alpha,alpha-trehalase YP_005275946.1 239052 R 595495 CDS YP_005275947.1 378711054 11775257 241106..242503 1 NC_016902.1 KEGG: eoh:ECO103_4246 putative cytochrome c peroxidase; PFAM: Di-haem cytochrome c peroxidase; cytochrome-c peroxidase 242503 11775257 EKO11_0221 Escherichia coli KO11FL cytochrome-c peroxidase YP_005275947.1 241106 D 595495 CDS YP_005275948.1 378711055 11775258 242714..244114 1 NC_016902.1 TIGRFAM: glutamate decarboxylase; KEGG: sbo:SBO_3516 glutamate decarboxylase isozyme; PFAM: Pyridoxal-dependent decarboxylase; glutamate decarboxylase 244114 11775258 EKO11_0222 Escherichia coli KO11FL glutamate decarboxylase YP_005275948.1 242714 D 595495 CDS YP_005275949.1 378711056 11775259 244484..245308 1 NC_016902.1 KEGG: sbc:SbBS512_E3914 DNA-binding transcriptional regulator GadX; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 245308 11775259 EKO11_0223 Escherichia coli KO11FL AraC family transcriptional regulator YP_005275949.1 244484 D 595495 CDS YP_005275950.1 378711057 11779276 245676..246404 1 NC_016902.1 KEGG: sbc:SbBS512_E3913 transcriptional regulator GadW; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 246404 11779276 EKO11_0224 Escherichia coli KO11FL AraC family transcriptional regulator YP_005275950.1 245676 D 595495 CDS YP_005275951.1 378711058 11775260 246549..246830 1 NC_016902.1 KEGG: efe:EFER_3040 hypothetical protein; putative exported protein; hypothetical protein 246830 11775260 EKO11_0225 Escherichia coli KO11FL hypothetical protein YP_005275951.1 246549 D 595495 CDS YP_005275952.1 378711059 11775261 complement(246767..249880) 1 NC_016902.1 KEGG: ssn:SSON_3572 putative transport system permease protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 249880 11775261 EKO11_0226 Escherichia coli KO11FL hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_005275952.1 246767 R 595495 CDS YP_005275953.1 378711060 11775262 complement(249905..251062) 1 NC_016902.1 KEGG: sbo:SBO_3512 multidrug efflux system protein MdtE; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 251062 11775262 EKO11_0227 Escherichia coli KO11FL RND family efflux transporter MFP subunit YP_005275953.1 249905 R 595495 CDS YP_005275954.1 378711061 11775263 251122..251400 1 NC_016902.1 KEGG: ebd:ECBD_0228 hypothetical protein; hypothetical protein 251400 11775263 EKO11_0228 Escherichia coli KO11FL hypothetical protein YP_005275954.1 251122 D 595495 CDS YP_005275955.1 378711062 11779277 complement(251401..251928) 1 NC_016902.1 KEGG: ssn:SSON_3574 hypothetical protein; hypothetical protein 251928 11779277 EKO11_0229 Escherichia coli KO11FL hypothetical protein YP_005275955.1 251401 R 595495 CDS YP_005275956.1 378711063 11775264 complement(252727..253299) 1 NC_016902.1 KEGG: sbc:SbBS512_E3909 acid-resistance membrane protein; acid-resistance membrane protein 253299 11775264 EKO11_0230 Escherichia coli KO11FL acid-resistance membrane protein YP_005275956.1 252727 R 595495 CDS YP_005275957.1 378711064 11779278 253554..253886 1 NC_016902.1 PFAM: HNS-dependent expression A; KEGG: sdy:SDY_3543 acid-resistance protein; HNS-dependent expression A 253886 11779278 EKO11_0231 Escherichia coli KO11FL HNS-dependent expression A YP_005275957.1 253554 D 595495 CDS YP_005275958.1 378711065 11775265 253990..254328 1 NC_016902.1 KEGG: sbc:SbBS512_E3907 acid-resistance protein; acid-resistance protein 254328 11775265 EKO11_0232 Escherichia coli KO11FL acid-resistance protein YP_005275958.1 253990 D 595495 CDS YP_005275959.1 378711066 11775266 254392..255039 1 NC_016902.1 KEGG: ebd:ECBD_0233 putative Mg(2+) transport ATPase; manually curated; PFAM: MgtC/SapB transporter; MgtC/SapB transporter 255039 11775266 EKO11_0233 Escherichia coli KO11FL MgtC/SapB transporter YP_005275959.1 254392 D 595495 CDS YP_005275960.1 378711067 11775267 complement(255081..255611) 1 NC_016902.1 KEGG: ebd:ECBD_0234 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; regulatory protein LuxR 255611 11775267 EKO11_0234 Escherichia coli KO11FL regulatory protein LuxR YP_005275960.1 255081 R 595495 CDS YP_005275961.1 378711068 11775268 complement(255767..256333) 1 NC_016902.1 KEGG: sbc:SbBS512_E3904 outer membrane lipoprotein, Slp family; TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; outer membrane lipoprotein, Slp family 256333 11775268 EKO11_0235 Escherichia coli KO11FL outer membrane lipoprotein, Slp family YP_005275961.1 255767 R 595495 CDS YP_005275962.1 378711069 11775269 complement(258383..259384) 1 NC_016902.1 PFAM: permease; KEGG: eoh:ECO103_4232 hypothetical protein; permease 259384 11775269 EKO11_0237 Escherichia coli KO11FL permease YP_005275962.1 258383 R 595495 CDS YP_005275963.1 378711070 11775270 259492..259788 1 NC_016902.1 KEGG: sbo:SBO_3502 hypothetical protein; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; regulatory protein ArsR 259788 11775270 EKO11_0238 Escherichia coli KO11FL regulatory protein ArsR YP_005275963.1 259492 D 595495 CDS YP_005275964.1 378711071 11775271 complement(259916..260356) 1 NC_016902.1 TIGRFAM: arsenate reductase; KEGG: sbc:SbBS512_E3818 arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase 260356 11775271 EKO11_0239 Escherichia coli KO11FL arsenate reductase YP_005275964.1 259916 R 595495 CDS YP_005275965.1 378711072 11775272 complement(260369..261658) 1 NC_016902.1 KEGG: sbo:SBO_3500 arsenical pump membrane protein; TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; arsenical pump membrane protein 261658 11775272 EKO11_0240 Escherichia coli KO11FL arsenical pump membrane protein YP_005275965.1 260369 R 595495 CDS YP_005275966.1 378711073 11775273 complement(261712..262065) 1 NC_016902.1 KEGG: ssn:SSON_3736 DNA-binding transcriptional repressor ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 262065 11775273 EKO11_0241 Escherichia coli KO11FL ArsR family transcriptional regulator YP_005275966.1 261712 R 595495 CDS YP_005275967.1 378711074 11775274 complement(262604..262777) 1 NC_016902.1 KEGG: ebd:ECBD_0240 hypothetical protein; hypothetical protein 262777 11775274 EKO11_0242 Escherichia coli KO11FL hypothetical protein YP_005275967.1 262604 R 595495 CDS YP_005275968.1 378711075 11775275 complement(262942..264294) 1 NC_016902.1 KEGG: ebd:ECBD_0241 glutathione reductase; TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; glutathione-disulfide reductase 264294 11775275 EKO11_0243 Escherichia coli KO11FL glutathione-disulfide reductase YP_005275968.1 262942 R 595495 CDS YP_005275969.1 378711076 11775276 complement(264366..265208) 1 NC_016902.1 PFAM: protein of unknown function DUF519; KEGG: sbo:SBO_3497 hypothetical protein; hypothetical protein 265208 11775276 EKO11_0244 Escherichia coli KO11FL hypothetical protein YP_005275969.1 264366 R 595495 CDS YP_005275970.1 378711077 11775277 265411..267453 1 NC_016902.1 KEGG: ebd:ECBD_0243 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; oligopeptidase A 267453 11775277 EKO11_0245 Escherichia coli KO11FL oligopeptidase A YP_005275970.1 265411 D 595495 CDS YP_005275971.1 378711078 11775278 267461..268213 1 NC_016902.1 PFAM: protein of unknown function DUF548; KEGG: ssn:SSON_3732 putative methyltransferase; hypothetical protein 268213 11775278 EKO11_0246 Escherichia coli KO11FL hypothetical protein YP_005275971.1 267461 D 595495 CDS YP_005275972.1 378711079 11775279 complement(268262..269731) 1 NC_016902.1 KEGG: ebd:ECBD_0245 inner membrane transporter YhiP; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; amino acid/peptide transporter 269731 11775279 EKO11_0247 Escherichia coli KO11FL amino acid/peptide transporter YP_005275972.1 268262 R 595495 CDS YP_005275973.1 378711080 11779280 complement(270049..270483) 1 NC_016902.1 PFAM: UspA domain-containing protein; KEGG: cro:ROD_43041 universal stress protein A; UspA domain-containing protein 270483 11779280 EKO11_0248 Escherichia coli KO11FL UspA domain-containing protein YP_005275973.1 270049 R 595495 CDS YP_005275974.1 378711081 11775280 270874..271209 1 NC_016902.1 PFAM: Universal stress protein B; KEGG: sdy:SDY_3568 universal stress protein UspB; Universal stress protein B 271209 11775280 EKO11_0249 Escherichia coli KO11FL Universal stress protein B YP_005275974.1 270874 D 595495 CDS YP_005275975.1 378711082 11775281 complement(271280..272779) 1 NC_016902.1 PFAM: phosphate transporter; KEGG: sdy:SDY_3569 low-affinity phosphate transport; phosphate transporter 272779 11775281 EKO11_0250 Escherichia coli KO11FL phosphate transporter YP_005275975.1 271280 R 595495 CDS YP_005275976.1 378711083 11775282 273011..274213 1 NC_016902.1 PFAM: HI0933 family protein; KEGG: eoh:ECO103_4218 putative oxidoreductase; hypothetical protein 274213 11775282 EKO11_0251 Escherichia coli KO11FL hypothetical protein YP_005275976.1 273011 D 595495 CDS YP_005275977.1 378711084 11775283 complement(274529..275581) 1 NC_016902.1 KEGG: eok:G2583_4217 inner membrane protein YhiM; inner membrane protein YhiM 275581 11775283 EKO11_0252 Escherichia coli KO11FL inner membrane protein YhiM YP_005275977.1 274529 R 595495 CDS YP_005275978.1 378711085 11775284 275965..277554 1 NC_016902.1 KEGG: sfl:SF3505 hypothetical protein; hypothetical protein 277554 11775284 EKO11_0253 Escherichia coli KO11FL hypothetical protein YP_005275978.1 275965 D 595495 CDS YP_005275979.1 378711086 11775285 277816..279438 1 NC_016902.1 KEGG: eoh:ECO103_4214 hypothetical protein; hypothetical protein 279438 11775285 EKO11_0254 Escherichia coli KO11FL hypothetical protein YP_005275979.1 277816 D 595495 CDS YP_005275980.1 378711087 11775286 279804..280871 1 NC_016902.1 PFAM: secretion protein HlyD family protein; KEGG: efe:EFER_3479 putative HlyD family secretion protein; secretion protein HlyD family protein 280871 11775286 EKO11_0255 Escherichia coli KO11FL secretion protein HlyD family protein YP_005275980.1 279804 D 595495 CDS YP_005275981.1 378711088 11775287 280868..283603 1 NC_016902.1 KEGG: ebd:ECBD_0254 ABC transporter related; PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; ABC transporter 283603 11775287 EKO11_0256 Escherichia coli KO11FL ABC transporter YP_005275981.1 280868 D 595495 CDS YP_005275982.1 378711089 11775288 283603..284727 1 NC_016902.1 PFAM: ABC-2 type transporter; KEGG: eoi:ECO111_4294 putative transporter subunit; ABC transporter 284727 11775288 EKO11_0257 Escherichia coli KO11FL ABC transporter YP_005275982.1 283603 D 595495 CDS YP_005275983.1 378711090 11775290 285058..285417 1 NC_016902.1 KEGG: ssn:SSON_3720 hypothetical protein; hypothetical protein 285417 11775290 EKO11_0259 Escherichia coli KO11FL hypothetical protein YP_005275983.1 285058 D 595495 CDS YP_005275984.1 378711091 11775291 complement(285537..285938) 1 NC_016902.1 KEGG: sdy:SDY_3636 nickel responsive regulator; TIGRFAM: nickel-responsive transcriptional regulator NikR; PFAM: NikR nickel binding; CopG family transcriptional regulator 285938 11775291 EKO11_0260 Escherichia coli KO11FL CopG family transcriptional regulator YP_005275984.1 285537 R 595495 CDS YP_005275985.1 378711092 11775292 complement(285944..286750) 1 NC_016902.1 TIGRFAM: nickel import ATP-binding protein NikE; PFAM: ABC transporter related; KEGG: eoh:ECO103_4200 nickel transporter ATP-binding protein NikE; SMART: AAA ATPase; nickel import ATP-binding protein NikE 286750 11775292 EKO11_0261 Escherichia coli KO11FL nickel import ATP-binding protein NikE YP_005275985.1 285944 R 595495 CDS YP_005275986.1 378711093 11775293 complement(286747..287511) 1 NC_016902.1 TIGRFAM: nickel import ATP-binding protein NikD; PFAM: ABC transporter related; KEGG: ebd:ECBD_0262 nickel transporter ATP-binding protein NikD; SMART: AAA ATPase; nickel import ATP-binding protein NikD 287511 11775293 EKO11_0262 Escherichia coli KO11FL nickel import ATP-binding protein NikD YP_005275986.1 286747 R 595495 CDS YP_005275987.1 378711094 11775294 complement(287511..288344) 1 NC_016902.1 KEGG: ssn:SSON_3716 nickel transporter permease NikC; TIGRFAM: nickel ABC transporter, permease subunit NikC; PFAM: binding-protein-dependent transport systems inner membrane component; nickel ABC transporter permease NikC 288344 11775294 EKO11_0263 Escherichia coli KO11FL nickel ABC transporter permease NikC YP_005275987.1 287511 R 595495 CDS YP_005275988.1 378711095 11775295 complement(288341..289285) 1 NC_016902.1 KEGG: sbc:SbBS512_E3844 nickel transporter permease NikB; TIGRFAM: nickel ABC transporter, permease subunit NikB; PFAM: binding-protein-dependent transport systems inner membrane component; nickel ABC transporter permease NikB 289285 11775295 EKO11_0264 Escherichia coli KO11FL nickel ABC transporter permease NikB YP_005275988.1 288341 R 595495 CDS YP_005275989.1 378711096 11775296 complement(289285..290859) 1 NC_016902.1 KEGG: eoh:ECO103_4196 periplasmic binding protein for nickel NikA; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5; nickel ABC transporter periplasmic nickel-binding protein 290859 11775296 EKO11_0265 Escherichia coli KO11FL nickel ABC transporter periplasmic nickel-binding protein YP_005275989.1 289285 R 595495 CDS YP_005275990.1 378711097 11775297 complement(290970..291557) 1 NC_016902.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sbo:SBO_3472 holo-(acyl carrier protein) synthase 2; 4'-phosphopantetheinyl transferase 291557 11775297 EKO11_0266 Escherichia coli KO11FL 4'-phosphopantetheinyl transferase YP_005275990.1 290970 R 595495 CDS YP_005275991.1 378711098 11775298 complement(291612..292661) 1 NC_016902.1 PFAM: protein of unknown function UPF0118; KEGG: ebd:ECBD_0267 protein of unknown function UPF0118; hypothetical protein 292661 11775298 EKO11_0267 Escherichia coli KO11FL hypothetical protein YP_005275991.1 291612 R 595495 CDS YP_005275992.1 378711099 11775299 292751..294010 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3849 major facilitator superfamily transporter; major facilitator superfamily protein 294010 11775299 EKO11_0268 Escherichia coli KO11FL major facilitator superfamily protein YP_005275992.1 292751 D 595495 CDS YP_005275993.1 378711100 11775300 complement(294014..294625) 1 NC_016902.1 manually curated; KEGG: eoh:ECO103_4192 hypothetical protein; hypothetical protein 294625 11775300 EKO11_0269 Escherichia coli KO11FL hypothetical protein YP_005275993.1 294014 R 595495 CDS YP_005275994.1 378711101 11775301 complement(294644..295309) 1 NC_016902.1 KEGG: sfx:S4274 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; hypothetical protein 295309 11775301 EKO11_0270 Escherichia coli KO11FL hypothetical protein YP_005275994.1 294644 R 595495 CDS YP_005275995.1 378711102 11775302 295530..295775 1 NC_016902.1 PFAM: SirA-like domain-containing protein; KEGG: sdy:SDY_3621 sulfur transfer protein SirA; SirA-like domain-containing protein 295775 11775302 EKO11_0271 Escherichia coli KO11FL SirA-like domain-containing protein YP_005275995.1 295530 D 595495 CDS YP_005275996.1 378711103 11779281 complement(295877..298075) 1 NC_016902.1 KEGG: ssn:SSON_3707 zinc/cadmium/mercury/lead-transporting ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating P-type ATPase 298075 11779281 EKO11_0272 Escherichia coli KO11FL heavy metal translocating P-type ATPase YP_005275996.1 295877 R 595495 CDS YP_005275997.1 378711104 11775303 complement(298149..298775) 1 NC_016902.1 PFAM: YhhN family protein; KEGG: sbc:SbBS512_E3854 hypothetical protein; hypothetical protein 298775 11775303 EKO11_0273 Escherichia coli KO11FL hypothetical protein YP_005275997.1 298149 R 595495 CDS YP_005275998.1 378711105 11775304 298916..299275 1 NC_016902.1 PFAM: Protein of unknown function DUF2500; KEGG: sbo:SBO_3464 putative receptor; hypothetical protein 299275 11775304 EKO11_0274 Escherichia coli KO11FL hypothetical protein YP_005275998.1 298916 D 595495 CDS YP_005275999.1 378711106 11779282 complement(299278..299547) 1 NC_016902.1 PFAM: protein of unknown function DUF1145; KEGG: sdy:SDY_3617 hypothetical protein; hypothetical protein 299547 11779282 EKO11_0275 Escherichia coli KO11FL hypothetical protein YP_005275999.1 299278 R 595495 CDS YP_005276000.1 378711107 11775305 complement(299537..300133) 1 NC_016902.1 TIGRFAM: methyltransferase; KEGG: sbo:SBO_3462 16S rRNA m(2)G966-methyltransferase; PFAM: Conserved hypothetical protein CHP00095; methyltransferase 300133 11775305 EKO11_0276 Escherichia coli KO11FL methyltransferase YP_005276000.1 299537 R 595495 CDS YP_005276001.1 378711108 11779283 300283..301776 1 NC_016902.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: eoh:ECO103_4184 cell division protein FtsY; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 301776 11779283 EKO11_0277 Escherichia coli KO11FL signal recognition particle-docking protein FtsY YP_005276001.1 300283 D 595495 CDS YP_005276002.1 378711109 11775306 301779..302447 1 NC_016902.1 TIGRFAM: Type II (General) Secretory Pathway (IISP) Family protein; cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: sdy:SDY_3614 cell division protein FtsE; SMART: AAA ATPase; Type II (General) Secretory Pathway (IISP) Family protein 302447 11775306 EKO11_0278 Escherichia coli KO11FL Type II (General) Secretory Pathway (IISP) Family protein YP_005276002.1 301779 D 595495 CDS YP_005276003.1 378711110 11775307 302440..303498 1 NC_016902.1 KEGG: sdy:SDY_3613 cell division protein FtsX; TIGRFAM: protein insertion ABC transporter, inner membrane subunit FtsX; PFAM: protein of unknown function DUF214; protein insertion ABC transporter inner membrane subunit FtsX 303498 11775307 EKO11_0279 Escherichia coli KO11FL protein insertion ABC transporter inner membrane subunit FtsX YP_005276003.1 302440 D 595495 CDS YP_005276004.1 378711111 11779284 303743..304597 1 NC_016902.1 KEGG: sdy:SDY_3612 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; RNA polymerase sigma-32 subunit RpoH 304597 11779284 EKO11_0280 Escherichia coli KO11FL RNA polymerase sigma-32 subunit RpoH YP_005276004.1 303743 D 595495 CDS YP_005276005.1 378711112 11775308 304868..305971 1 NC_016902.1 PFAM: Extracellular ligand-binding receptor; KEGG: sbo:SBO_3457 high-affinity amino acid transport system periplasmic binding protein; extracellular ligand-binding receptor 305971 11775308 EKO11_0281 Escherichia coli KO11FL extracellular ligand-binding receptor YP_005276005.1 304868 D 595495 CDS YP_005276006.1 378711113 11775309 306121..306387 1 NC_016902.1 PFAM: protein of unknown function DUF1778; KEGG: eok:G2583_4162 hypothetical protein; hypothetical protein 306387 11775309 EKO11_0282 Escherichia coli KO11FL hypothetical protein YP_005276006.1 306121 D 595495 CDS YP_005276007.1 378711114 11775310 306394..306921 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eok:G2583_4161 hypothetical protein; N-acetyltransferase GCN5 306921 11775310 EKO11_0283 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005276007.1 306394 D 595495 CDS YP_005276008.1 378711115 11775311 complement(306918..307301) 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbo:SBO_3456 hypothetical protein; N-acetyltransferase GCN5 307301 11775311 EKO11_0284 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005276008.1 306918 R 595495 CDS YP_005276009.1 378711116 11775312 307725..308834 1 NC_016902.1 PFAM: Extracellular ligand-binding receptor; KEGG: sbc:SbBS512_E3864 high-affinity branched-chain amino acid ABC transporter, periplasmic leucine-specific-binding protein LivK; extracellular ligand-binding receptor 308834 11775312 EKO11_0285 Escherichia coli KO11FL extracellular ligand-binding receptor YP_005276009.1 307725 D 595495 CDS YP_005276010.1 378711117 11775313 308882..309808 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3865 branched-chain amino acid transporter permease subunit LivH; inner-membrane translocator 309808 11775313 EKO11_0286 Escherichia coli KO11FL inner-membrane translocator YP_005276010.1 308882 D 595495 CDS YP_005276011.1 378711118 11775314 309805..311082 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3866 leucine/isoleucine/valine transporter permease subunit; inner-membrane translocator 311082 11775314 EKO11_0287 Escherichia coli KO11FL inner-membrane translocator YP_005276011.1 309805 D 595495 CDS YP_005276012.1 378711119 11775315 311079..311846 1 NC_016902.1 KEGG: ssn:SSON_3693 leucine/isoleucine/valine transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 311846 11775315 EKO11_0288 Escherichia coli KO11FL ABC transporter YP_005276012.1 311079 D 595495 CDS YP_005276013.1 378711120 11775316 311848..312561 1 NC_016902.1 KEGG: ssn:SSON_3692 leucine/isoleucine/valine transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 312561 11775316 EKO11_0289 Escherichia coli KO11FL ABC transporter YP_005276013.1 311848 D 595495 CDS YP_005276014.1 378711121 11775317 312958..314274 1 NC_016902.1 PFAM: extracellular solute-binding protein family 1; KEGG: efe:EFER_3425 glycerol-3-phosphate transporter periplasmic binding protein; extracellular solute-binding protein 314274 11775317 EKO11_0290 Escherichia coli KO11FL extracellular solute-binding protein YP_005276014.1 312958 D 595495 CDS YP_005276015.1 378711122 11775318 314372..315259 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eoi:ECO111_4260 glycerol-3-phosphate transporter permease; binding-protein-dependent transport system inner membrane protein 315259 11775318 EKO11_0291 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005276015.1 314372 D 595495 CDS YP_005276016.1 378711123 11775319 315256..316101 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E3872 glycerol-3-phosphate transporter membrane protein; binding-protein-dependent transport system inner membrane protein 316101 11775319 EKO11_0292 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005276016.1 315256 D 595495 CDS YP_005276017.1 378711124 11775320 316103..317173 1 NC_016902.1 KEGG: eoi:ECO111_4258 glycerol-3-phosphate transporter ATP-binding subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 317173 11775320 EKO11_0293 Escherichia coli KO11FL ABC transporter YP_005276017.1 316103 D 595495 CDS YP_005276018.1 378711125 11775321 317170..317913 1 NC_016902.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sbc:SbBS512_E3875 cytoplasmic glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 317913 11775321 EKO11_0294 Escherichia coli KO11FL glycerophosphoryl diester phosphodiesterase YP_005276018.1 317170 D 595495 CDS YP_005276019.1 378711126 11775322 complement(317900..318340) 1 NC_016902.1 KEGG: sbc:SbBS512_E3874 hypothetical protein; hypothetical protein 318340 11775322 EKO11_0295 Escherichia coli KO11FL hypothetical protein YP_005276019.1 317900 R 595495 CDS YP_005276020.1 378711127 11775323 318460..320202 1 NC_016902.1 TIGRFAM: gamma-glutamyltransferase; KEGG: eoi:ECO111_4255 gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 320202 11775323 EKO11_0296 Escherichia coli KO11FL gamma-glutamyltransferase YP_005276020.1 318460 D 595495 CDS YP_005276021.1 378711128 11779285 complement(320240..320524) 1 NC_016902.1 KEGG: sbc:SbBS512_E3877 hypothetical protein; hypothetical protein 320524 11779285 EKO11_0297 Escherichia coli KO11FL hypothetical protein YP_005276021.1 320240 R 595495 CDS YP_005276022.1 378711129 11775324 complement(320724..320879) 1 NC_016902.1 KEGG: ebd:ECBD_0296 hypothetical protein; hypothetical protein 320879 11775324 EKO11_0298 Escherichia coli KO11FL hypothetical protein YP_005276022.1 320724 R 595495 CDS YP_005276023.1 378711130 11775325 complement(320974..321468) 1 NC_016902.1 KEGG: ebr:ECB_03294 hypothetical protein; hypothetical protein 321468 11775325 EKO11_0299 Escherichia coli KO11FL hypothetical protein YP_005276023.1 320974 R 595495 CDS YP_005276024.1 378711131 11779286 complement(321465..322643) 1 NC_016902.1 KEGG: eoh:ECO103_4164 hypothetical protein; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; HNH endonuclease; type VI secretion system effector 322643 11779286 EKO11_0300 Escherichia coli KO11FL type VI secretion system effector YP_005276024.1 321465 R 595495 CDS YP_005276025.1 378711132 11775326 complement(322880..323446) 1 NC_016902.1 KEGG: sfv:SFV_3449 putative acetyltransferase YhhY; manually curated; PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 323446 11775326 EKO11_0301 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005276025.1 322880 R 595495 CDS YP_005276026.1 378711133 11775327 323700..324737 1 NC_016902.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ebd:ECBD_0302 putative dehydrogenase; oxidoreductase domain-containing protein 324737 11775327 EKO11_0302 Escherichia coli KO11FL oxidoreductase domain-containing protein YP_005276026.1 323700 D 595495 CDS YP_005276027.1 378711134 11779287 324860..325555 1 NC_016902.1 PFAM: Pirin domain protein; KEGG: sbc:SbBS512_E3886 pirin family protein; Pirin domain-containing protein 325555 11779287 EKO11_0303 Escherichia coli KO11FL Pirin domain-containing protein YP_005276027.1 324860 D 595495 CDS YP_005276028.1 378711135 11775328 325779..326774 1 NC_016902.1 KEGG: eoi:ECO111_4248 DNA-binding transcriptional repressor GntR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; LacI family transcriptional regulator 326774 11775328 EKO11_0304 Escherichia coli KO11FL LacI family transcriptional regulator YP_005276028.1 325779 D 595495 CDS YP_005276029.1 378711136 11775329 326913..327440 1 NC_016902.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: ssn:SSON_3679 gluconate kinase 1; PFAM: shikimate kinase; thermoresistant glucokinase family carbohydrate kinase 327440 11775329 EKO11_0305 Escherichia coli KO11FL thermoresistant glucokinase family carbohydrate kinase YP_005276029.1 326913 D 595495 CDS YP_005276030.1 378711137 11775330 327444..328784 1 NC_016902.1 KEGG: sdy:SDY_3587 low affinity gluconate transporter; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; gluconate transporter 328784 11775330 EKO11_0306 Escherichia coli KO11FL gluconate transporter YP_005276030.1 327444 D 595495 CDS YP_005276031.1 378711138 11775331 complement(328841..329434) 1 NC_016902.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: sdy:SDY_3580 putative dITP- and XTP- hydrolase; multiple antibiotic resistance (MarC)-like protein 329434 11775331 EKO11_0307 Escherichia coli KO11FL multiple antibiotic resistance (MarC)-like protein YP_005276031.1 328841 R 595495 CDS YP_005276032.1 378711139 11775332 329626..330729 1 NC_016902.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: sbo:SBO_3431 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase 330729 11775332 EKO11_0308 Escherichia coli KO11FL aspartate-semialdehyde dehydrogenase YP_005276032.1 329626 D 595495 CDS YP_005276033.1 378711140 11775333 331002..333188 1 NC_016902.1 TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; KEGG: ssn:SSON_3672 glycogen branching enzyme; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan-branching protein 333188 11775333 EKO11_0309 Escherichia coli KO11FL 1,4-alpha-glucan-branching protein YP_005276033.1 331002 D 595495 CDS YP_005276034.1 378711141 11775334 333185..335158 1 NC_016902.1 KEGG: eok:G2583_4132 glycogen debranching enzyme; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; glycogen debranching protein GlgX 335158 11775334 EKO11_0310 Escherichia coli KO11FL glycogen debranching protein GlgX YP_005276034.1 333185 D 595495 CDS YP_005276035.1 378711142 11775335 335176..336471 1 NC_016902.1 KEGG: sdy:SDY_3576 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate adenylyltransferase 336471 11775335 EKO11_0311 Escherichia coli KO11FL glucose-1-phosphate adenylyltransferase YP_005276035.1 335176 D 595495 CDS YP_005276036.1 378711143 11775336 336471..337904 1 NC_016902.1 KEGG: ebd:ECBD_0313 glycogen synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1; glycogen/starch synthase 337904 11775336 EKO11_0312 Escherichia coli KO11FL glycogen/starch synthase YP_005276036.1 336471 D 595495 CDS YP_005276037.1 378711144 11775337 337923..340370 1 NC_016902.1 TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; KEGG: sdy:SDY_3574 glycogen phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 340370 11775337 EKO11_0313 Escherichia coli KO11FL glycogen/starch/alpha-glucan phosphorylase YP_005276037.1 337923 D 595495 CDS YP_005276038.1 378711145 11775338 340498..342003 1 NC_016902.1 KEGG: eoh:ECO103_4148 hypothetical protein; hypothetical protein 342003 11775338 EKO11_0314 Escherichia coli KO11FL hypothetical protein YP_005276038.1 340498 D 595495 CDS YP_005276039.1 378711146 11775339 342018..342728 1 NC_016902.1 KEGG: eoh:ECO103_4147 hypothetical protein; hypothetical protein 342728 11775339 EKO11_0315 Escherichia coli KO11FL hypothetical protein YP_005276039.1 342018 D 595495 CDS YP_005276040.1 378711147 11775340 342731..343498 1 NC_016902.1 KEGG: eoh:ECO103_4146 hypothetical protein; hypothetical protein 343498 11775340 EKO11_0316 Escherichia coli KO11FL hypothetical protein YP_005276040.1 342731 D 595495 CDS YP_005276041.1 378711148 11779288 343501..344106 1 NC_016902.1 KEGG: eoh:ECO103_4145 hypothetical protein; hypothetical protein 344106 11779288 EKO11_0317 Escherichia coli KO11FL hypothetical protein YP_005276041.1 343501 D 595495 CDS YP_005276042.1 378711149 11775341 complement(344160..345665) 1 NC_016902.1 KEGG: sfl:SF3448 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase 345665 11775341 EKO11_0318 Escherichia coli KO11FL glycerol-3-phosphate dehydrogenase YP_005276042.1 344160 R 595495 CDS YP_005276043.1 378711150 11775342 345855..346181 1 NC_016902.1 PFAM: Rhodanese domain protein; KEGG: ssn:SSON_3662 thiosulfate sulfurtransferase; SMART: Rhodanese domain protein; thiosulfate sulfurtransferase 346181 11775342 EKO11_0319 Escherichia coli KO11FL thiosulfate sulfurtransferase YP_005276043.1 345855 D 595495 CDS YP_005276044.1 378711151 11779289 346226..347056 1 NC_016902.1 KEGG: eoh:ECO103_4142 intramembrane serine protease GlpG; PFAM: Rhomboid family protein; rhomboid protease 347056 11779289 EKO11_0320 Escherichia coli KO11FL rhomboid protease YP_005276044.1 346226 D 595495 CDS YP_005276045.1 378711152 11775343 347073..347831 1 NC_016902.1 KEGG: sdy:SDY_3652 DNA-binding transcriptional repressor GlpR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 347831 11775343 EKO11_0321 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005276045.1 347073 D 595495 CDS YP_005276046.1 378711153 11775344 complement(347813..349411) 1 NC_016902.1 KEGG: eoh:ECO103_4140 sigma 54-dependent transcriptional regulator of rtcBA expression; PFAM: regulator of RNA terminal phosphate cyclase; sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; sigma-54 interacting domain-containing protein 349411 11775344 EKO11_0322 Escherichia coli KO11FL sigma-54 interacting domain-containing protein YP_005276046.1 347813 R 595495 CDS YP_005276047.1 378711154 11779290 349600..350826 1 NC_016902.1 PFAM: protein of unknown function UPF0027; KEGG: eoi:ECO111_4229 hypothetical protein; hypothetical protein 350826 11779290 EKO11_0323 Escherichia coli KO11FL hypothetical protein YP_005276047.1 349600 D 595495 CDS YP_005276048.1 378711155 11775345 350830..351846 1 NC_016902.1 TIGRFAM: RNA 3'-phosphate cyclase; KEGG: eoi:ECO111_4228 RNA 3'-terminal-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase insert region; RNA 3'-phosphate cyclase 351846 11775345 EKO11_0324 Escherichia coli KO11FL RNA 3'-phosphate cyclase YP_005276048.1 350830 D 595495 CDS YP_005276049.1 378711156 11775346 complement(351889..354594) 1 NC_016902.1 KEGG: eok:G2583_4115 transcriptional regulator MalT; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family ATP-dependent transcriptional regulator 354594 11775346 EKO11_0325 Escherichia coli KO11FL LuxR family ATP-dependent transcriptional regulator YP_005276049.1 351889 R 595495 CDS YP_005276050.1 378711157 11775348 357609..359693 1 NC_016902.1 TIGRFAM: 4-alpha-glucanotransferase; KEGG: ssn:SSON_3548 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 359693 11775348 EKO11_0327 Escherichia coli KO11FL 4-alpha-glucanotransferase YP_005276050.1 357609 D 595495 CDS YP_005276051.1 378711158 11775349 complement(359738..361054) 1 NC_016902.1 KEGG: sbc:SbBS512_E3796 high-affinity gluconate transporter; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; gluconate transporter 361054 11775349 EKO11_0328 Escherichia coli KO11FL gluconate transporter YP_005276051.1 359738 R 595495 CDS YP_005276052.1 378711159 11775350 complement(361415..361990) 1 NC_016902.1 KEGG: sdy:SDY_3662 putative DNA uptake protein; TIGRFAM: IscR-regulated protein YhgI; PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; IscR-regulated protein YhgI 361990 11775350 EKO11_0329 Escherichia coli KO11FL IscR-regulated protein YhgI YP_005276052.1 361415 R 595495 CDS YP_005276053.1 378711160 11775351 complement(362049..362732) 1 NC_016902.1 KEGG: sfv:SFV_3421 gluconate periplasmic binding protein; TIGRFAM: comF family protein; PFAM: phosphoribosyltransferase; comF family protein 362732 11775351 EKO11_0330 Escherichia coli KO11FL comF family protein YP_005276053.1 362049 R 595495 CDS YP_005276054.1 378711161 11775352 362770..363540 1 NC_016902.1 TIGRFAM: bioH protein; KEGG: eoi:ECO111_4221 carboxylesterase BioH; PFAM: alpha/beta hydrolase fold; bioH protein 363540 11775352 EKO11_0331 Escherichia coli KO11FL bioH protein YP_005276054.1 362770 D 595495 CDS YP_005276055.1 378711162 11775354 complement(364650..364886) 1 NC_016902.1 PFAM: protein of unknown function DUF1920; KEGG: sdy:SDY_3666 hypothetical protein; hypothetical protein 364886 11775354 EKO11_0333 Escherichia coli KO11FL hypothetical protein YP_005276055.1 364650 R 595495 CDS YP_005276056.1 378711163 11775355 complement(364886..367207) 1 NC_016902.1 KEGG: sbc:SbBS512_E3790 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein; ferrous iron transport protein B 367207 11775355 EKO11_0334 Escherichia coli KO11FL ferrous iron transport protein B YP_005276056.1 364886 R 595495 CDS YP_005276057.1 378711164 11775356 complement(367224..367451) 1 NC_016902.1 KEGG: sdy:SDY_3668 ferrous iron transport protein A; PFAM: FeoA family protein; SMART: FeoA family protein; FeoA family protein 367451 11775356 EKO11_0335 Escherichia coli KO11FL FeoA family protein YP_005276057.1 367224 R 595495 CDS YP_005276058.1 378711165 11775357 complement(367889..370210) 1 NC_016902.1 KEGG: sbc:SbBS512_E3786 putative transcriptional accessory protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; Tex-like protein 370210 11775357 EKO11_0336 Escherichia coli KO11FL Tex-like protein YP_005276058.1 367889 R 595495 CDS YP_005276059.1 378711166 11779291 complement(370307..370783) 1 NC_016902.1 KEGG: sdy:SDY_3670 transcription elongation factor GreB; TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain-containing protein; transcription elongation factor GreB 370783 11779291 EKO11_0337 Escherichia coli KO11FL transcription elongation factor GreB YP_005276059.1 370307 R 595495 CDS YP_005276060.1 378711167 11775358 371011..371730 1 NC_016902.1 KEGG: pam:PANA_3682 OmpR; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 371730 11775358 EKO11_0338 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005276060.1 371011 D 595495 CDS YP_005276061.1 378711168 11775359 371727..373079 1 NC_016902.1 KEGG: sdy:SDY_3672 osmolarity sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 373079 11775359 EKO11_0339 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005276061.1 371727 D 595495 CDS YP_005276062.1 378711169 11775360 complement(373111..373407) 1 NC_016902.1 KEGG: efe:EFER_3371 putative HTH-type transcriptional regulator YiaG; putative HTH-type transcriptional regulator YiaG 373407 11775360 EKO11_0340 Escherichia coli KO11FL putative HTH-type transcriptional regulator YiaG YP_005276062.1 373111 R 595495 CDS YP_005276063.1 378711170 11775361 complement(373466..373783) 1 NC_016902.1 KEGG: efe:EFER_3370 hypothetical protein; hypothetical protein 373783 11775361 EKO11_0341 Escherichia coli KO11FL hypothetical protein YP_005276063.1 373466 R 595495 CDS YP_005276064.1 378711171 11775362 complement(373900..375522) 1 NC_016902.1 TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); KEGG: sbc:SbBS512_E3782 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase 375522 11775362 EKO11_0342 Escherichia coli KO11FL phosphoenolpyruvate carboxykinase YP_005276064.1 373900 R 595495 CDS YP_005276065.1 378711172 11775363 375901..377625 1 NC_016902.1 KEGG: eok:G2583_4098 hypothetical protein; hypothetical protein 377625 11775363 EKO11_0343 Escherichia coli KO11FL hypothetical protein YP_005276065.1 375901 D 595495 CDS YP_005276066.1 378711173 11775364 complement(377688..378566) 1 NC_016902.1 PFAM: Hsp33 protein; KEGG: sdy:SDY_3677 HSP33-like chaperonin; Hsp33 protein 378566 11775364 EKO11_0344 Escherichia coli KO11FL Hsp33 protein YP_005276066.1 377688 R 595495 CDS YP_005276067.1 378711174 11775365 complement(378591..378992) 1 NC_016902.1 KEGG: sdy:SDY_3678 ribosome-associated heat shock protein HSP15; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 378992 11775365 EKO11_0345 Escherichia coli KO11FL RNA-binding S4 domain-containing protein YP_005276067.1 378591 R 595495 CDS YP_005276068.1 378711175 11779292 complement(379003..379671) 1 NC_016902.1 KEGG: sdy:SDY_3679 putative phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 379671 11779292 EKO11_0346 Escherichia coli KO11FL HAD-superfamily hydrolase YP_005276068.1 379003 R 595495 CDS YP_005276069.1 378711176 11775366 complement(379736..381871) 1 NC_016902.1 PFAM: Intracellular growth attenuator IgaA; KEGG: eoh:ECO103_4116 putative inner membrane protein; intracellular growth attenuator igaA 381871 11775366 EKO11_0347 Escherichia coli KO11FL intracellular growth attenuator igaA YP_005276069.1 379736 R 595495 CDS YP_005276070.1 378711177 11775367 382191..382751 1 NC_016902.1 PFAM: NUDIX hydrolase; KEGG: sbc:SbBS512_E3774 ADP-ribose diphosphatase NudE; NUDIX hydrolase 382751 11775367 EKO11_0348 Escherichia coli KO11FL NUDIX hydrolase YP_005276070.1 382191 D 595495 CDS YP_005276071.1 378711178 11779293 complement(382916..385468) 1 NC_016902.1 TIGRFAM: penicillin-binding protein, 1A family; KEGG: ebd:ECBD_0351 peptidoglycan synthetase; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 385468 11779293 EKO11_0349 Escherichia coli KO11FL penicillin-binding protein YP_005276071.1 382916 R 595495 CDS YP_005276072.1 378711179 11775368 385588..386367 1 NC_016902.1 KEGG: eoi:ECO111_4204 putative pilus assembly protein; putative pilus assembly protein 386367 11775368 EKO11_0350 Escherichia coli KO11FL putative pilus assembly protein YP_005276072.1 385588 D 595495 CDS YP_005276073.1 378711180 11775369 386367..386906 1 NC_016902.1 PFAM: Fimbrial assembly family protein; KEGG: eoh:ECO103_4112 putative fimbrial assembly protein; fimbrial assembly family protein 386906 11775369 EKO11_0351 Escherichia coli KO11FL fimbrial assembly family protein YP_005276073.1 386367 D 595495 CDS YP_005276074.1 378711181 11775370 386890..387330 1 NC_016902.1 KEGG: sfv:SFV_3398 hypothetical protein; hypothetical protein 387330 11775370 EKO11_0352 Escherichia coli KO11FL hypothetical protein YP_005276074.1 386890 D 595495 CDS YP_005276075.1 378711182 11775371 387320..387724 1 NC_016902.1 KEGG: sdy:SDY_3687 hypothetical protein; hypothetical protein 387724 11775371 EKO11_0353 Escherichia coli KO11FL hypothetical protein YP_005276075.1 387320 D 595495 CDS YP_005276076.1 378711183 11775372 387636..388874 1 NC_016902.1 manually curated; TIGRFAM: type IV pilus secretin PilQ; KEGG: ebd:ECBD_0356 outer membrane porin HofQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; type IV pilus secretin PilQ 388874 11775372 EKO11_0354 Escherichia coli KO11FL type IV pilus secretin PilQ YP_005276076.1 387636 D 595495 CDS YP_005276077.1 378711184 11775373 389275..389796 1 NC_016902.1 KEGG: sdy:SDY_3689 shikimate kinase I; PFAM: shikimate kinase; shikimate kinase 389796 11775373 EKO11_0355 Escherichia coli KO11FL shikimate kinase YP_005276077.1 389275 D 595495 CDS YP_005276078.1 378711185 11775374 389853..390941 1 NC_016902.1 TIGRFAM: 3-dehydroquinate synthase; KEGG: sbo:SBO_3376 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; 3-dehydroquinate synthase 390941 11775374 EKO11_0356 Escherichia coli KO11FL 3-dehydroquinate synthase YP_005276078.1 389853 D 595495 CDS YP_005276079.1 378711186 11775375 391033..392319 1 NC_016902.1 PFAM: Sporulation domain-containing protein; KEGG: ebd:ECBD_0359 hypothetical protein; sporulation domain-containing protein 392319 11775375 EKO11_0357 Escherichia coli KO11FL sporulation domain-containing protein YP_005276079.1 391033 D 595495 CDS YP_005276080.1 378711187 11775376 392426..393262 1 NC_016902.1 KEGG: sbc:SbBS512_E3764 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 393262 11775376 EKO11_0358 Escherichia coli KO11FL DNA adenine methylase YP_005276080.1 392426 D 595495 CDS YP_005276081.1 378711188 11775377 393280..393957 1 NC_016902.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: sbc:SbBS512_E3763 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 393957 11775377 EKO11_0359 Escherichia coli KO11FL ribulose-phosphate 3-epimerase YP_005276081.1 393280 D 595495 CDS YP_005276082.1 378711189 11775378 393950..394708 1 NC_016902.1 KEGG: sbc:SbBS512_E3762 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 394708 11775378 EKO11_0360 Escherichia coli KO11FL phosphoglycolate phosphatase YP_005276082.1 393950 D 595495 CDS YP_005276083.1 378711190 11775379 394701..395705 1 NC_016902.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: ebd:ECBD_0363 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 395705 11775379 EKO11_0361 Escherichia coli KO11FL tryptophanyl-tRNA synthetase YP_005276083.1 394701 D 595495 CDS YP_005276084.1 378711191 11775380 395865..396770 1 NC_016902.1 KEGG: eoh:ECO103_4101 hypothetical protein; hypothetical protein 396770 11775380 EKO11_0362 Escherichia coli KO11FL hypothetical protein YP_005276084.1 395865 D 595495 CDS YP_005276085.1 378711192 11775381 396787..397149 1 NC_016902.1 KEGG: sbc:SbBS512_E3759 hypothetical protein; hypothetical protein 397149 11775381 EKO11_0363 Escherichia coli KO11FL hypothetical protein YP_005276085.1 396787 D 595495 CDS YP_005276086.1 378711193 11775382 397233..398396 1 NC_016902.1 PFAM: alanine racemase domain protein; KEGG: eoi:ECO111_4190 putative amino acid racemase; alanine racemase 398396 11775382 EKO11_0364 Escherichia coli KO11FL alanine racemase YP_005276086.1 397233 D 595495 CDS YP_005276087.1 378711194 11775383 398396..399622 1 NC_016902.1 KEGG: eoi:ECO111_4189 putative mutase; PFAM: metalloenzyme domain protein; phosphopentomutase 399622 11775383 EKO11_0365 Escherichia coli KO11FL phosphopentomutase YP_005276087.1 398396 D 595495 CDS YP_005276088.1 378711195 11775384 399619..400497 1 NC_016902.1 PFAM: aryldialkylphosphatase; KEGG: eoi:ECO111_4188 putative hydrolase; aryldialkylphosphatase 400497 11775384 EKO11_0366 Escherichia coli KO11FL aryldialkylphosphatase YP_005276088.1 399619 D 595495 CDS YP_005276089.1 378711196 11775385 400508..400861 1 NC_016902.1 KEGG: sbc:SbBS512_E3755 hypothetical protein; hypothetical protein 400861 11775385 EKO11_0367 Escherichia coli KO11FL hypothetical protein YP_005276089.1 400508 D 595495 CDS YP_005276090.1 378711197 11779294 400873..402177 1 NC_016902.1 PFAM: Protein of unknown function, YhfT; KEGG: eoh:ECO103_4095 hypothetical protein; hypothetical protein 402177 11779294 EKO11_0368 Escherichia coli KO11FL hypothetical protein YP_005276090.1 400873 D 595495 CDS YP_005276091.1 378711198 11775386 402189..403274 1 NC_016902.1 PFAM: aminotransferase class I and II; KEGG: ebw:BWG_3067 hypothetical protein; class I and II aminotransferase 403274 11775386 EKO11_0369 Escherichia coli KO11FL class I and II aminotransferase YP_005276091.1 402189 D 595495 CDS YP_005276092.1 378711199 11775387 complement(403426..404157) 1 NC_016902.1 KEGG: sbc:SbBS512_E3752 DNA-binding transcriptional regulator FrlR; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 404157 11775387 EKO11_0370 Escherichia coli KO11FL GntR family transcriptional regulator YP_005276092.1 403426 R 595495 CDS YP_005276093.1 378711200 11779295 complement(404257..405042) 1 NC_016902.1 PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E3751 fructoselysine 6-kinase; PfkB domain-containing protein 405042 11779295 EKO11_0371 Escherichia coli KO11FL PfkB domain-containing protein YP_005276093.1 404257 R 595495 CDS YP_005276094.1 378711201 11775388 complement(405039..405869) 1 NC_016902.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: eoh:ECO103_4091 fructoselysine 3-epimerase; xylose isomerase domain-containing protein 405869 11775388 EKO11_0372 Escherichia coli KO11FL xylose isomerase domain-containing protein YP_005276094.1 405039 R 595495 CDS YP_005276095.1 378711202 11775389 complement(405919..406941) 1 NC_016902.1 PFAM: sugar isomerase (SIS); KEGG: sfv:SFV_3377 fructoselysine-6-P-deglycase; sugar isomerase (SIS) 406941 11775389 EKO11_0373 Escherichia coli KO11FL sugar isomerase (SIS) YP_005276095.1 405919 R 595495 CDS YP_005276096.1 378711203 11779296 complement(406962..408299) 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: ssn:SSON_3502 putative fructoselysine transporter; amino acid permease 408299 11779296 EKO11_0374 Escherichia coli KO11FL amino acid permease YP_005276096.1 406962 R 595495 CDS YP_005276097.1 378711204 11775390 complement(408594..408761) 1 NC_016902.1 KEGG: sbc:SbBS512_E3747 putative lipoprotein; putative lipoprotein 408761 11775390 EKO11_0375 Escherichia coli KO11FL putative lipoprotein YP_005276097.1 408594 R 595495 CDS YP_005276098.1 378711205 11775391 complement(409008..410381) 1 NC_016902.1 KEGG: ebd:ECBD_0380 siroheme synthase; TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Sirohaem synthase, dimerisation domain; uroporphyrin-III C-methyltransferase 410381 11775391 EKO11_0376 Escherichia coli KO11FL uroporphyrin-III C-methyltransferase YP_005276098.1 409008 R 595495 CDS YP_005276099.1 378711206 11775392 complement(410400..411206) 1 NC_016902.1 KEGG: sfv:SFV_3373 nitrite transporter NirC; TIGRFAM: formate/nitrite transporter; PFAM: formate/nitrite transporter; formate/nitrite transporter 411206 11775392 EKO11_0377 Escherichia coli KO11FL formate/nitrite transporter YP_005276099.1 410400 R 595495 CDS YP_005276100.1 378711207 11775393 complement(411333..411659) 1 NC_016902.1 KEGG: sdy:SDY_3528 nitrite reductase small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; nitrite reductase (NAD(P)H) small subunit 411659 11775393 EKO11_0378 Escherichia coli KO11FL nitrite reductase (NAD(P)H) small subunit YP_005276100.1 411333 R 595495 CDS YP_005276101.1 378711208 11775394 complement(411656..414199) 1 NC_016902.1 KEGG: sbc:SbBS512_E3741 nitrite reductase [NAD(P)H], large subunit; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; nitrite reductase (NAD(P)H) large subunit 414199 11775394 EKO11_0379 Escherichia coli KO11FL nitrite reductase (NAD(P)H) large subunit YP_005276101.1 411656 R 595495 CDS YP_005276102.1 378711209 11775395 complement(414461..415642) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoh:ECO103_4083 hypothetical protein; major facilitator superfamily protein 415642 11775395 EKO11_0380 Escherichia coli KO11FL major facilitator superfamily protein YP_005276102.1 414461 R 595495 CDS YP_005276103.1 378711210 11775396 415913..416485 1 NC_016902.1 KEGG: sbc:SbBS512_E3738 peptidyl-prolyl cis-trans isomerase A (rotamase A); PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; peptidylprolyl isomerase 416485 11775396 EKO11_0381 Escherichia coli KO11FL peptidylprolyl isomerase YP_005276103.1 415913 D 595495 CDS YP_005276104.1 378711211 11775397 416590..416757 1 NC_016902.1 KEGG: ssn:SSON_3493 hypothetical protein; hypothetical protein 416757 11775397 EKO11_0382 Escherichia coli KO11FL hypothetical protein YP_005276104.1 416590 D 595495 CDS YP_005276105.1 378711212 11775398 416747..417349 1 NC_016902.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: eoh:ECO103_4080 cell filamentation protein Fic; filamentation induced by cAMP protein fic 417349 11775398 EKO11_0383 Escherichia coli KO11FL filamentation induced by cAMP protein fic YP_005276105.1 416747 D 595495 CDS YP_005276106.1 378711213 11775399 417381..417944 1 NC_016902.1 KEGG: ebd:ECBD_0388 para-aminobenzoate synthase component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; glutamine amidotransferase of anthranilate synthase 417944 11775399 EKO11_0384 Escherichia coli KO11FL glutamine amidotransferase of anthranilate synthase YP_005276106.1 417381 D 595495 CDS YP_005276107.1 378711214 11775400 418030..419250 1 NC_016902.1 TIGRFAM: succinylornithine transaminase family; acetylornithine and succinylornithine aminotransferase; KEGG: eoh:ECO103_4078 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; PFAM: aminotransferase class-III; succinylornithine transaminase family 419250 11775400 EKO11_0385 Escherichia coli KO11FL succinylornithine transaminase family YP_005276107.1 418030 D 595495 CDS YP_005276108.1 378711215 11775401 complement(419317..421407) 1 NC_016902.1 TIGRFAM: integral membrane protein, YccS/YhfK family; KEGG: sbc:SbBS512_E3734 integral membrane protein, YccS/YhfK family; YccS/YhfK family integral membrane protein 421407 11775401 EKO11_0386 Escherichia coli KO11FL YccS/YhfK family integral membrane protein YP_005276108.1 419317 R 595495 CDS YP_005276109.1 378711216 11775402 complement(421458..422090) 1 NC_016902.1 KEGG: etr:ETAE_3299 cAMP-regulatory protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; CarD family transcriptional regulator 422090 11775402 EKO11_0387 Escherichia coli KO11FL CarD family transcriptional regulator YP_005276109.1 421458 R 595495 CDS YP_005276110.1 378711217 11775403 422392..422796 1 NC_016902.1 PFAM: OsmC family protein; KEGG: sdy:SDY_3518 hypothetical protein; OsmC family protein 422796 11775403 EKO11_0388 Escherichia coli KO11FL OsmC family protein YP_005276110.1 422392 D 595495 CDS YP_005276111.1 378711218 11775404 complement(422851..423720) 1 NC_016902.1 KEGG: sbo:SBO_3335 phosphoribulokinase; phosphoribulokinase 423720 11775404 EKO11_0389 Escherichia coli KO11FL phosphoribulokinase YP_005276111.1 422851 R 595495 CDS YP_005276112.1 378711219 11775405 complement(423774..423992) 1 NC_016902.1 PFAM: protein of unknown function UPF0270; KEGG: sbc:SbBS512_E3729 hypothetical protein; hypothetical protein 423992 11775405 EKO11_0390 Escherichia coli KO11FL hypothetical protein YP_005276112.1 423774 R 595495 CDS YP_005276113.1 378711220 11779297 complement(423986..425008) 1 NC_016902.1 PFAM: alpha/beta hydrolase fold; KEGG: eoh:ECO103_4072 putative hydrolase; alpha/beta hydrolase fold protein 425008 11779297 EKO11_0391 Escherichia coli KO11FL alpha/beta hydrolase fold protein YP_005276113.1 423986 R 595495 CDS YP_005276114.1 378711221 11775406 complement(425008..426921) 1 NC_016902.1 KEGG: ssn:SSON_3483 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 426921 11775406 EKO11_0392 Escherichia coli KO11FL ABC transporter YP_005276114.1 425008 R 595495 CDS YP_005276115.1 378711222 11775407 427052..427603 1 NC_016902.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: efe:EFER_3322 glutathione-regulated potassium-efflux system ancillary protein KefG; NAD(P)H dehydrogenase (quinone) 427603 11775407 EKO11_0393 Escherichia coli KO11FL NAD(P)H dehydrogenase (quinone) YP_005276115.1 427052 D 595495 CDS YP_005276116.1 378711223 11779298 427603..429408 1 NC_016902.1 KEGG: ssn:SSON_3481 glutathione-regulated potassium-efflux system protein KefB; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; potassium efflux system protein 429408 11779298 EKO11_0394 Escherichia coli KO11FL potassium efflux system protein YP_005276116.1 427603 D 595495 CDS YP_005276117.1 378711224 11775408 429418..429618 1 NC_016902.1 PFAM: Conserved hypothetical protein CHP02443; KEGG: sdy:SDY_3511 hypothetical protein; hypothetical protein 429618 11775408 EKO11_0395 Escherichia coli KO11FL hypothetical protein YP_005276117.1 429418 D 595495 CDS YP_005276118.1 378711225 11775409 429713..430303 1 NC_016902.1 KEGG: sbc:SbBS512_E3723 FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: peptidylprolyl isomerase FKBP-type; peptidylprolyl isomerase 430303 11775409 EKO11_0396 Escherichia coli KO11FL peptidylprolyl isomerase YP_005276118.1 429713 D 595495 CDS YP_005276119.1 378711226 11775410 complement(430352..430570) 1 NC_016902.1 PFAM: SlyX family protein; KEGG: sdy:SDY_3509 hypothetical protein; SlyX family protein 430570 11775410 EKO11_0397 Escherichia coli KO11FL SlyX family protein YP_005276119.1 430352 R 595495 CDS YP_005276120.1 378711227 11775411 430791..431603 1 NC_016902.1 KEGG: sbo:SBO_3327 FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; peptidylprolyl isomerase 431603 11775411 EKO11_0398 Escherichia coli KO11FL peptidylprolyl isomerase YP_005276120.1 430791 D 595495 CDS YP_005276121.1 378711228 11775412 431770..432492 1 NC_016902.1 PFAM: YheO-like domain-containing protein; KEGG: sbc:SbBS512_E3720 hypothetical protein; YheO-like domain-containing protein 432492 11775412 EKO11_0399 Escherichia coli KO11FL YheO-like domain-containing protein YP_005276121.1 431770 D 595495 CDS YP_005276122.1 378711229 11775413 432492..432878 1 NC_016902.1 KEGG: ebd:ECBD_0404 sulfur transfer complex subunit TusD; TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; sulfur relay protein TusD/DsrE 432878 11775413 EKO11_0400 Escherichia coli KO11FL sulfur relay protein TusD/DsrE YP_005276122.1 432492 D 595495 CDS YP_005276123.1 378711230 11775414 432878..433237 1 NC_016902.1 KEGG: sbc:SbBS512_E3718 sulfur relay protein TusC; TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; sulfur relay protein TusC/DsrF 433237 11775414 EKO11_0401 Escherichia coli KO11FL sulfur relay protein TusC/DsrF YP_005276123.1 432878 D 595495 CDS YP_005276124.1 378711231 11775415 433245..433532 1 NC_016902.1 KEGG: sbc:SbBS512_E3717 sulfur transfer complex subunit TusB; TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; sulfur relay protein TusB/DsrH 433532 11775415 EKO11_0402 Escherichia coli KO11FL sulfur relay protein TusB/DsrH YP_005276124.1 433245 D 595495 CDS YP_005276125.1 378711232 11775416 433658..434032 1 NC_016902.1 KEGG: cro:ROD_44771 30S ribosomal subunit protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; 30S ribosomal protein S12 434032 11775416 EKO11_0403 Escherichia coli KO11FL 30S ribosomal protein S12 YP_005276125.1 433658 D 595495 CDS YP_005276126.1 378711233 11775417 434129..434599 1 NC_016902.1 KEGG: sbc:SbBS512_E3715 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; 30S ribosomal protein S7 434599 11775417 EKO11_0404 Escherichia coli KO11FL 30S ribosomal protein S7 YP_005276126.1 434129 D 595495 CDS YP_005276127.1 378711234 11775418 434696..436810 1 NC_016902.1 KEGG: sdy:SDY_3501 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; translation elongation factor G 436810 11775418 EKO11_0405 Escherichia coli KO11FL translation elongation factor G YP_005276127.1 434696 D 595495 CDS YP_005276128.1 378711235 11775419 436881..438065 1 NC_016902.1 KEGG: ses:SARI_04181 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; translation elongation factor Tu 438065 11775419 EKO11_0406 Escherichia coli KO11FL translation elongation factor Tu YP_005276128.1 436881 D 595495 CDS YP_005276129.1 378711236 11775420 438248..438442 1 NC_016902.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sdy:SDY_3499 bacterioferritin-associated ferredoxin; BFD (2Fe-2S)-binding domain-containing protein 438442 11775420 EKO11_0407 Escherichia coli KO11FL BFD (2Fe-2S)-binding domain-containing protein YP_005276129.1 438248 D 595495 CDS YP_005276130.1 378711237 11775421 438515..438991 1 NC_016902.1 KEGG: sfv:SFV_3342 bacterioferritin; TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; bacterioferritin 438991 11775421 EKO11_0408 Escherichia coli KO11FL bacterioferritin YP_005276130.1 438515 D 595495 CDS YP_005276131.1 378711238 11775422 complement(438988..439455) 1 NC_016902.1 PFAM: peptidase A24A prepilin type IV; KEGG: eoh:ECO103_4054 leader peptidase HopD; peptidase A24A prepilin type IV 439455 11775422 EKO11_0409 Escherichia coli KO11FL peptidase A24A prepilin type IV YP_005276131.1 438988 R 595495 CDS YP_005276132.1 378711239 11775423 439834..440145 1 NC_016902.1 KEGG: sdy:SDY_3497 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; 30S ribosomal protein S10 440145 11775423 EKO11_0410 Escherichia coli KO11FL 30S ribosomal protein S10 YP_005276132.1 439834 D 595495 CDS YP_005276133.1 378711240 11779299 440178..440807 1 NC_016902.1 KEGG: sdy:SDY_3496 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; 50S ribosomal protein L3 440807 11779299 EKO11_0411 Escherichia coli KO11FL 50S ribosomal protein L3 YP_005276133.1 440178 D 595495 CDS YP_005276134.1 378711241 11775424 440818..441423 1 NC_016902.1 PFAM: ribosomal protein L4/L1e; KEGG: cro:ROD_45031 50S ribosomal subunit protein L4; 50S ribosomal protein L4 441423 11775424 EKO11_0412 Escherichia coli KO11FL 50S ribosomal protein L4 YP_005276134.1 440818 D 595495 CDS YP_005276135.1 378711242 11775425 441420..441722 1 NC_016902.1 PFAM: Ribosomal protein L25/L23; KEGG: sbc:SbBS512_E3703 50S ribosomal protein L23; 50S ribosomal protein L25 441722 11775425 EKO11_0413 Escherichia coli KO11FL 50S ribosomal protein L25 YP_005276135.1 441420 D 595495 CDS YP_005276136.1 378711243 11779300 441740..442561 1 NC_016902.1 KEGG: ctu:Ctu_38440 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; 50S ribosomal protein L2 442561 11779300 EKO11_0414 Escherichia coli KO11FL 50S ribosomal protein L2 YP_005276136.1 441740 D 595495 CDS YP_005276137.1 378711244 11775426 442578..442856 1 NC_016902.1 KEGG: cro:ROD_45061 30S ribosomal subunit protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; 30S ribosomal protein S19 442856 11775426 EKO11_0415 Escherichia coli KO11FL 30S ribosomal protein S19 YP_005276137.1 442578 D 595495 CDS YP_005276138.1 378711245 11775427 442871..443203 1 NC_016902.1 KEGG: cro:ROD_45071 50S ribosomal subunit protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; 50S ribosomal protein L22 443203 11775427 EKO11_0416 Escherichia coli KO11FL 50S ribosomal protein L22 YP_005276138.1 442871 D 595495 CDS YP_005276139.1 378711246 11775428 443221..443922 1 NC_016902.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: cro:ROD_45081 30S ribosomal subunit protein S3; SMART: KH domain protein; 30S ribosomal protein S3 443922 11775428 EKO11_0417 Escherichia coli KO11FL 30S ribosomal protein S3 YP_005276139.1 443221 D 595495 CDS YP_005276140.1 378711247 11775429 443935..444345 1 NC_016902.1 KEGG: cko:CKO_04727 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; 50S ribosomal protein L16 444345 11775429 EKO11_0418 Escherichia coli KO11FL 50S ribosomal protein L16 YP_005276140.1 443935 D 595495 CDS YP_005276141.1 378711248 11775430 444345..444536 1 NC_016902.1 KEGG: sbc:SbBS512_E3697 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; 50S ribosomal protein L29 444536 11775430 EKO11_0419 Escherichia coli KO11FL 50S ribosomal protein L29 YP_005276141.1 444345 D 595495 CDS YP_005276142.1 378711249 11775431 444536..444790 1 NC_016902.1 KEGG: ctu:Ctu_38380 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17; 30S ribosomal protein S17 444790 11775431 EKO11_0420 Escherichia coli KO11FL 30S ribosomal protein S17 YP_005276142.1 444536 D 595495 CDS YP_005276143.1 378711250 11775432 444955..445326 1 NC_016902.1 KEGG: sdy:SDY_3486 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; 50S ribosomal protein L14 445326 11775432 EKO11_0421 Escherichia coli KO11FL 50S ribosomal protein L14 YP_005276143.1 444955 D 595495 CDS YP_005276144.1 378711251 11775433 445337..445651 1 NC_016902.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: dda:Dd703_0416 50S ribosomal protein L24; SMART: KOW domain protein; 50S ribosomal protein L24 445651 11775433 EKO11_0422 Escherichia coli KO11FL 50S ribosomal protein L24 YP_005276144.1 445337 D 595495 CDS YP_005276145.1 378711252 11775434 445666..446205 1 NC_016902.1 KEGG: kpu:KP1_5029 50S ribosomal protein L5; 50S ribosomal protein L5 446205 11775434 EKO11_0423 Escherichia coli KO11FL 50S ribosomal protein L5 YP_005276145.1 445666 D 595495 CDS YP_005276146.1 378711253 11779301 446220..446525 1 NC_016902.1 PFAM: ribosomal protein S14; KEGG: sdy:SDY_3483 30S ribosomal protein S14; 30S ribosomal protein S14 446525 11779301 EKO11_0424 Escherichia coli KO11FL 30S ribosomal protein S14 YP_005276146.1 446220 D 595495 CDS YP_005276147.1 378711254 11775435 446559..446951 1 NC_016902.1 PFAM: ribosomal protein S8; KEGG: cko:CKO_04720 30S ribosomal protein S8; 30S ribosomal protein S8 446951 11775435 EKO11_0425 Escherichia coli KO11FL 30S ribosomal protein S8 YP_005276147.1 446559 D 595495 CDS YP_005276148.1 378711255 11775436 446964..447497 1 NC_016902.1 KEGG: sdy:SDY_3481 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 447497 11775436 EKO11_0426 Escherichia coli KO11FL 50S ribosomal protein L6 YP_005276148.1 446964 D 595495 CDS YP_005276149.1 378711256 11775437 447507..447860 1 NC_016902.1 KEGG: cko:CKO_04717 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; 50S ribosomal protein L18 447860 11775437 EKO11_0427 Escherichia coli KO11FL 50S ribosomal protein L18 YP_005276149.1 447507 D 595495 CDS YP_005276150.1 378711257 11775438 447875..448378 1 NC_016902.1 KEGG: cro:ROD_45191 30S ribosomal subunit protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; 30S ribosomal protein S5 448378 11775438 EKO11_0428 Escherichia coli KO11FL 30S ribosomal protein S5 YP_005276150.1 447875 D 595495 CDS YP_005276151.1 378711258 11775439 448382..448561 1 NC_016902.1 KEGG: sdy:SDY_3478 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; 50S ribosomal protein L30 448561 11775439 EKO11_0429 Escherichia coli KO11FL 50S ribosomal protein L30 YP_005276151.1 448382 D 595495 CDS YP_005276152.1 378711259 11779302 448565..448999 1 NC_016902.1 TIGRFAM: ribosomal protein L15; KEGG: cko:CKO_04713 50S ribosomal protein L15; 50S ribosomal protein L15 448999 11779302 EKO11_0430 Escherichia coli KO11FL 50S ribosomal protein L15 YP_005276152.1 448565 D 595495 CDS YP_005276153.1 378711260 11775440 449007..450338 1 NC_016902.1 KEGG: sbc:SbBS512_E3685 preprotein translocase subunit SecY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; preprotein translocase subunit SecY 450338 11775440 EKO11_0431 Escherichia coli KO11FL preprotein translocase subunit SecY YP_005276153.1 449007 D 595495 CDS YP_005276154.1 378711261 11775441 450370..450486 1 NC_016902.1 KEGG: cro:ROD_45222 50S ribosomal subunit protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; 50S ribosomal protein L36 450486 11775441 EKO11_0432 Escherichia coli KO11FL 50S ribosomal protein L36 YP_005276154.1 450370 D 595495 CDS YP_005276155.1 378711262 11775442 450633..450989 1 NC_016902.1 KEGG: sdy:SDY_3474 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13; 30S ribosomal protein S13 450989 11775442 EKO11_0433 Escherichia coli KO11FL 30S ribosomal protein S13 YP_005276155.1 450633 D 595495 CDS YP_005276156.1 378711263 11775443 451006..451395 1 NC_016902.1 KEGG: cro:ROD_45241 30S ribosomal subunit protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; 30S ribosomal protein S11 451395 11775443 EKO11_0434 Escherichia coli KO11FL 30S ribosomal protein S11 YP_005276156.1 451006 D 595495 CDS YP_005276157.1 378711264 11775444 451429..452049 1 NC_016902.1 TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: cko:CKO_04709 30S ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 452049 11775444 EKO11_0435 Escherichia coli KO11FL 30S ribosomal protein S4 YP_005276157.1 451429 D 595495 CDS YP_005276158.1 378711265 11775445 452075..453064 1 NC_016902.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: cro:ROD_45261 DNA-directed RNA polymerase alpha chain; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 453064 11775445 EKO11_0436 Escherichia coli KO11FL DNA-directed RNA polymerase subunit alpha YP_005276158.1 452075 D 595495 CDS YP_005276159.1 378711266 11775446 453105..453488 1 NC_016902.1 KEGG: sdy:SDY_3470 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; 50S ribosomal protein L17 453488 11775446 EKO11_0437 Escherichia coli KO11FL 50S ribosomal protein L17 YP_005276159.1 453105 D 595495 CDS YP_005276160.1 378711267 11775447 453595..453963 1 NC_016902.1 PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; KEGG: eok:G2583_4011 hypothetical protein; DnaJ family protein 453963 11775447 EKO11_0438 Escherichia coli KO11FL DnaJ family protein YP_005276160.1 453595 D 595495 CDS YP_005276161.1 378711268 11775448 453974..454399 1 NC_016902.1 TIGRFAM: Zn(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: sdy:SDY_3468 zinc-responsive transcriptional regulator; SMART: regulatory protein MerR; MerR family transcriptional regulator 454399 11775448 EKO11_0439 Escherichia coli KO11FL MerR family transcriptional regulator YP_005276161.1 453974 D 595495 CDS YP_005276162.1 378711269 11775449 454455..454673 1 NC_016902.1 PFAM: protein of unknown function DUF331; KEGG: eoh:ECO103_4023 hypothetical protein; hypothetical protein 454673 11775449 EKO11_0440 Escherichia coli KO11FL hypothetical protein YP_005276162.1 454455 D 595495 CDS YP_005276163.1 378711270 11775450 complement(454670..455080) 1 NC_016902.1 KEGG: efe:EFER_3274 large-conductance mechanosensitive channel; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein 455080 11775450 EKO11_0441 Escherichia coli KO11FL large conductance mechanosensitive channel protein YP_005276163.1 454670 R 595495 CDS YP_005276164.1 378711271 11775451 complement(455210..456586) 1 NC_016902.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sbc:SbBS512_E3674 potassium transporter peripheral membrane component; TrkA-N domain-containing protein 456586 11775451 EKO11_0442 Escherichia coli KO11FL TrkA-N domain-containing protein YP_005276164.1 455210 R 595495 CDS YP_005276165.1 378711272 11775452 complement(456608..457897) 1 NC_016902.1 KEGG: eoh:ECO103_4020 16S rRNA methyltransferase B; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; sun protein 457897 11775452 EKO11_0443 Escherichia coli KO11FL sun protein YP_005276165.1 456608 R 595495 CDS YP_005276166.1 378711273 11779303 complement(457943..458890) 1 NC_016902.1 TIGRFAM: methionyl-tRNA formyltransferase; KEGG: eoh:ECO103_4019 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase 458890 11779303 EKO11_0444 Escherichia coli KO11FL methionyl-tRNA formyltransferase YP_005276166.1 457943 R 595495 CDS YP_005276167.1 378711274 11775453 complement(458905..459414) 1 NC_016902.1 KEGG: sdy:SDY_3463 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 459414 11775453 EKO11_0445 Escherichia coli KO11FL peptide deformylase YP_005276167.1 458905 R 595495 CDS YP_005276168.1 378711275 11775454 459544..460668 1 NC_016902.1 KEGG: eoj:ECO26_4387 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA 460668 11775454 EKO11_0446 Escherichia coli KO11FL DNA protecting protein DprA YP_005276168.1 459544 D 595495 CDS YP_005276169.1 378711276 11779304 460640..461113 1 NC_016902.1 PFAM: protein of unknown function DUF494; KEGG: eoh:ECO103_4016 hypothetical protein; hypothetical protein 461113 11779304 EKO11_0447 Escherichia coli KO11FL hypothetical protein YP_005276169.1 460640 D 595495 CDS YP_005276170.1 378711277 11775455 461142..461684 1 NC_016902.1 PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: sdy:SDY_3460 putative DNA topoisomerase; DNA topoisomerase type IA zn finger domain-containing protein 461684 11775455 EKO11_0448 Escherichia coli KO11FL DNA topoisomerase type IA zn finger domain-containing protein YP_005276170.1 461142 D 595495 CDS YP_005276171.1 378711278 11775456 461689..462261 1 NC_016902.1 PFAM: SUA5/yciO/yrdC domain; KEGG: sbc:SbBS512_E3667 putative ribosome maturation factor; SUA5/yciO/yrdC domain-containing protein 462261 11775456 EKO11_0449 Escherichia coli KO11FL SUA5/yciO/yrdC domain-containing protein YP_005276171.1 461689 D 595495 CDS YP_005276172.1 378711279 11775457 462266..463084 1 NC_016902.1 KEGG: eoi:ECO111_4101 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; shikimate 5-dehydrogenase 463084 11775457 EKO11_0450 Escherichia coli KO11FL shikimate 5-dehydrogenase YP_005276172.1 462266 D 595495 CDS YP_005276173.1 378711280 11775458 463081..463338 1 NC_016902.1 PFAM: protein of unknown function DUF1488; KEGG: sbc:SbBS512_E3664 hypothetical protein; hypothetical protein 463338 11775458 EKO11_0451 Escherichia coli KO11FL hypothetical protein YP_005276173.1 463081 D 595495 CDS YP_005276174.1 378711281 11775459 complement(463314..464195) 1 NC_016902.1 manually curated; KEGG: eok:G2583_3998 hypothetical protein; hypothetical protein 464195 11775459 EKO11_0452 Escherichia coli KO11FL hypothetical protein YP_005276174.1 463314 R 595495 CDS YP_005276175.1 378711282 11775467 complement(469919..470677) 1 NC_016902.1 KEGG: eoh:ECO103_4010 putative ATP-binding component of a transport system; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 470677 11775467 EKO11_0453 Escherichia coli KO11FL ABC transporter YP_005276175.1 469919 R 595495 CDS YP_005276176.1 378711283 11775468 complement(470685..471788) 1 NC_016902.1 KEGG: eoh:ECO103_4009 putative transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 471788 11775468 EKO11_0454 Escherichia coli KO11FL polar amino acid ABC transporter inner membrane subunit YP_005276176.1 470685 R 595495 CDS YP_005276177.1 378711284 11779305 complement(471798..472979) 1 NC_016902.1 KEGG: eoh:ECO103_4008 putative transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 472979 11779305 EKO11_0455 Escherichia coli KO11FL polar amino acid ABC transporter inner membrane subunit YP_005276177.1 471798 R 595495 CDS YP_005276178.1 378711285 11775469 complement(473047..474072) 1 NC_016902.1 KEGG: eok:G2583_3987 putative amino-acid ABC transporter-binding protein YhdW precursor; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 474072 11775469 EKO11_0456 Escherichia coli KO11FL family 3 extracellular solute-binding protein YP_005276178.1 473047 R 595495 CDS YP_005276179.1 378711286 11779306 complement(474503..474724) 1 NC_016902.1 KEGG: ebd:ECBD_0478 hypothetical protein; hypothetical protein 474724 11779306 EKO11_0457 Escherichia coli KO11FL hypothetical protein YP_005276179.1 474503 R 595495 CDS YP_005276180.1 378711287 11775471 complement(474977..478081) 1 NC_016902.1 KEGG: eoh:ECO103_4005 multidrug efflux system protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 478081 11775471 EKO11_0459 Escherichia coli KO11FL hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_005276180.1 474977 R 595495 CDS YP_005276181.1 378711288 11779307 complement(478093..479250) 1 NC_016902.1 KEGG: eoh:ECO103_4004 cytoplasmic membrane lipoprotein AcrE; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 479250 11779307 EKO11_0460 Escherichia coli KO11FL RND family efflux transporter MFP subunit YP_005276181.1 478093 R 595495 CDS YP_005276182.1 378711289 11779308 479649..480311 1 NC_016902.1 PFAM: Tetracycline transcriptional repressor MAATS-type domain-containing protein; regulatory protein TetR; KEGG: sbc:SbBS512_E3647 DNA-binding transcriptional regulator EnvR; TetR family transcriptional regulator 480311 11779308 EKO11_0461 Escherichia coli KO11FL TetR family transcriptional regulator YP_005276182.1 479649 D 595495 CDS YP_005276183.1 378711290 11775472 complement(480314..480493) 1 NC_016902.1 KEGG: ebd:ECBD_0482 hypothetical protein; hypothetical protein 480493 11775472 EKO11_0462 Escherichia coli KO11FL hypothetical protein YP_005276183.1 480314 R 595495 CDS YP_005276184.1 378711291 11775473 complement(480577..481461) 1 NC_016902.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: eoh:ECO103_4001 putative methyltransferase; DNA methylase N-4/N-6 domain-containing protein 481461 11775473 EKO11_0463 Escherichia coli KO11FL DNA methylase N-4/N-6 domain-containing protein YP_005276184.1 480577 R 595495 CDS YP_005276185.1 378711292 11779309 complement(481547..481843) 1 NC_016902.1 PFAM: helix-turn-helix Fis-type; KEGG: etr:ETAE_3152 DNA-binding protein fis; Fis family transcriptional regulator 481843 11779309 EKO11_0464 Escherichia coli KO11FL Fis family transcriptional regulator YP_005276185.1 481547 R 595495 CDS YP_005276186.1 378711293 11775474 complement(481869..482834) 1 NC_016902.1 manually curated; TIGRFAM: TIM-barrel protein, nifR3 family; KEGG: sdy:SDY_3437 tRNA-dihydrouridine synthase B; PFAM: dihydrouridine synthase DuS; nifR3 family TIM-barrel protein 482834 11775474 EKO11_0465 Escherichia coli KO11FL nifR3 family TIM-barrel protein YP_005276186.1 481869 R 595495 CDS YP_005276187.1 378711294 11775475 complement(483163..484044) 1 NC_016902.1 KEGG: sdy:SDY_3436 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; 50S ribosomal protein L11 methyltransferase 484044 11775475 EKO11_0466 Escherichia coli KO11FL 50S ribosomal protein L11 methyltransferase YP_005276187.1 483163 R 595495 CDS YP_005276188.1 378711295 11775476 complement(484056..485507) 1 NC_016902.1 KEGG: ssn:SSON_3399 sodium/panthothenate symporter; TIGRFAM: sodium/pantothenate symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; sodium/pantothenate symporter 485507 11775476 EKO11_0467 Escherichia coli KO11FL sodium/pantothenate symporter YP_005276188.1 484056 R 595495 CDS YP_005276189.1 378711296 11775477 complement(485497..485739) 1 NC_016902.1 PFAM: protein of unknown function DUF997; KEGG: sdy:SDY_3434 hypothetical protein; hypothetical protein 485739 11775477 EKO11_0468 Escherichia coli KO11FL hypothetical protein YP_005276189.1 485497 R 595495 CDS YP_005276190.1 378711297 11775478 complement(485848..487197) 1 NC_016902.1 KEGG: efe:EFER_3235 acetyl-CoA carboxylase biotin carboxylase subunit; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; acetyl-CoA carboxylase, biotin carboxylase 487197 11775478 EKO11_0469 Escherichia coli KO11FL acetyl-CoA carboxylase, biotin carboxylase YP_005276190.1 485848 R 595495 CDS YP_005276191.1 378711298 11775479 complement(487208..487678) 1 NC_016902.1 KEGG: sbc:SbBS512_E3287 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 487678 11775479 EKO11_0470 Escherichia coli KO11FL acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_005276191.1 487208 R 595495 CDS YP_005276192.1 378711299 11775481 complement(488656..489630) 1 NC_016902.1 KEGG: ssn:SSON_3394 putative dehydrogenase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; YhdH/YhfP family quinone oxidoreductase 489630 11775481 EKO11_0472 Escherichia coli KO11FL YhdH/YhfP family quinone oxidoreductase YP_005276192.1 488656 R 595495 CDS YP_005276193.1 378711300 11775482 489782..491722 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: eoh:ECO103_3992 regulatory protein CsrD; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase 491722 11775482 EKO11_0473 Escherichia coli KO11FL diguanylate cyclase/phosphodiesterase YP_005276193.1 489782 D 595495 CDS YP_005276194.1 378711301 11775483 492027..493070 1 NC_016902.1 KEGG: cro:ROD_45651 rod shape-determining protein; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; MreB/Mrl family cell shape determining protein 493070 11775483 EKO11_0474 Escherichia coli KO11FL MreB/Mrl family cell shape determining protein YP_005276194.1 492027 D 595495 CDS YP_005276195.1 378711302 11775484 493136..494239 1 NC_016902.1 KEGG: sdy:SDY_3425 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; rod shape-determining protein MreC 494239 11775484 EKO11_0475 Escherichia coli KO11FL rod shape-determining protein MreC YP_005276195.1 493136 D 595495 CDS YP_005276196.1 378711303 11775485 494239..494727 1 NC_016902.1 KEGG: sbc:SbBS512_E3280 rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; rod shape-determining protein MreD 494727 11775485 EKO11_0476 Escherichia coli KO11FL rod shape-determining protein MreD YP_005276196.1 494239 D 595495 CDS YP_005276197.1 378711304 11775486 494736..495329 1 NC_016902.1 KEGG: ssn:SSON_3389 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 495329 11775486 EKO11_0477 Escherichia coli KO11FL maf protein YP_005276197.1 494736 D 595495 CDS YP_005276198.1 378711305 11775487 495319..496788 1 NC_016902.1 KEGG: sdy:SDY_3422 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; ribonuclease, Rne/Rng family 496788 11775487 EKO11_0478 Escherichia coli KO11FL ribonuclease, Rne/Rng family YP_005276198.1 495319 D 595495 CDS YP_005276199.1 378711306 11775488 496856..500656 1 NC_016902.1 KEGG: ebw:BWG_2946 hypothetical protein; hypothetical protein 500656 11775488 EKO11_0479 Escherichia coli KO11FL hypothetical protein YP_005276199.1 496856 D 595495 CDS YP_005276200.1 378711307 11775489 501086..502531 1 NC_016902.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sfv:SFV_3271 protease TldD; peptidase U62 modulator of DNA gyrase 502531 11775489 EKO11_0480 Escherichia coli KO11FL peptidase U62 modulator of DNA gyrase YP_005276200.1 501086 D 595495 CDS YP_005276201.1 378711308 11779310 complement(502665..503594) 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbo:SBO_3144 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 503594 11779310 EKO11_0481 Escherichia coli KO11FL LysR family transcriptional regulator YP_005276201.1 502665 R 595495 CDS YP_005276202.1 378711309 11775490 503708..503980 1 NC_016902.1 KEGG: eok:G2583_3962 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1656; hypothetical protein 503980 11775490 EKO11_0482 Escherichia coli KO11FL hypothetical protein YP_005276202.1 503708 D 595495 CDS YP_005276203.1 378711310 11775491 503988..504920 1 NC_016902.1 KEGG: sdy:SDY_3417 p-hydroxybenzoic acid efflux subunit AaeA; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 504920 11775491 EKO11_0483 Escherichia coli KO11FL RND family efflux transporter MFP subunit YP_005276203.1 503988 D 595495 CDS YP_005276204.1 378711311 11779311 504926..506893 1 NC_016902.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: sfv:SFV_3267 p-hydroxybenzoic acid efflux subunit AaeB; fusaric acid resistance protein 506893 11779311 EKO11_0484 Escherichia coli KO11FL fusaric acid resistance protein YP_005276204.1 504926 D 595495 CDS YP_005276205.1 378711312 11775492 506985..507257 1 NC_016902.1 PFAM: Barstar (barnase inhibitor); KEGG: sbc:SbBS512_E3537 hypothetical protein; barnase inhibitor 507257 11775492 EKO11_0485 Escherichia coli KO11FL barnase inhibitor YP_005276205.1 506985 D 595495 CDS YP_005276206.1 378711313 11775493 complement(507313..507576) 1 NC_016902.1 PFAM: protein of unknown function DUF1471; KEGG: sbc:SbBS512_E3538 protein YcfR; hypothetical protein 507576 11775493 EKO11_0486 Escherichia coli KO11FL hypothetical protein YP_005276206.1 507313 R 595495 CDS YP_005276207.1 378711314 11775494 complement(507941..508411) 1 NC_016902.1 KEGG: sdy:SDY_3413 arginine repressor; TIGRFAM: arginine repressor; PFAM: Arginine repressor-like; arginine repressor ArgR 508411 11775494 EKO11_0487 Escherichia coli KO11FL arginine repressor ArgR YP_005276207.1 507941 R 595495 CDS YP_005276208.1 378711315 11775495 508846..509784 1 NC_016902.1 KEGG: eoi:ECO111_4056 malate dehydrogenase; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; malate dehydrogenase 509784 11775495 EKO11_0488 Escherichia coli KO11FL malate dehydrogenase YP_005276208.1 508846 D 595495 CDS YP_005276209.1 378711316 11775496 complement(509847..510914) 1 NC_016902.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: periplasmic serine protease DegS; KEGG: sdy:SDY_3411 serine endoprotease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; periplasmic serine protease DegS 510914 11775496 EKO11_0489 Escherichia coli KO11FL periplasmic serine protease DegS YP_005276209.1 509847 R 595495 CDS YP_005276210.1 378711317 11775497 complement(511004..512371) 1 NC_016902.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: sbc:SbBS512_E3542 serine endoprotease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 512371 11775497 EKO11_0490 Escherichia coli KO11FL protease Do YP_005276210.1 511004 R 595495 CDS YP_005276211.1 378711318 11775498 complement(512525..512923) 1 NC_016902.1 PFAM: protein of unknown function DUF1043; KEGG: sbc:SbBS512_E3543 cytochrome d ubiquinol oxidase subunit III; hypothetical protein 512923 11775498 EKO11_0491 Escherichia coli KO11FL hypothetical protein YP_005276211.1 512525 R 595495 CDS YP_005276212.1 378711319 11775499 513117..514244 1 NC_016902.1 PFAM: AFG1-family ATPase; KEGG: eoh:ECO103_3973 hypothetical protein; AFG1 family ATPase 514244 11775499 EKO11_0492 Escherichia coli KO11FL AFG1 family ATPase YP_005276212.1 513117 D 595495 CDS YP_005276213.1 378711320 11775500 514463..514891 1 NC_016902.1 KEGG: sfv:SFV_3258 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; 50S ribosomal protein L13 514891 11775500 EKO11_0493 Escherichia coli KO11FL 50S ribosomal protein L13 YP_005276213.1 514463 D 595495 CDS YP_005276214.1 378711321 11775501 514907..515299 1 NC_016902.1 PFAM: ribosomal protein S9; KEGG: cro:ROD_45931 30S ribosomal subunit protein S9; 30S ribosomal protein S9 515299 11775501 EKO11_0494 Escherichia coli KO11FL 30S ribosomal protein S9 YP_005276214.1 514907 D 595495 CDS YP_005276215.1 378711322 11775502 515694..516332 1 NC_016902.1 PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E3547 stringent starvation protein A; glutathione S-transferase 516332 11775502 EKO11_0495 Escherichia coli KO11FL glutathione S-transferase YP_005276215.1 515694 D 595495 CDS YP_005276216.1 378711323 11775503 516338..516835 1 NC_016902.1 PFAM: Stringent starvation protein B; KEGG: sbo:SBO_3161 ClpXP protease specificity-enhancing factor; stringent starvation protein B 516835 11775503 EKO11_0496 Escherichia coli KO11FL stringent starvation protein B YP_005276216.1 516338 D 595495 CDS YP_005276217.1 378711324 11775504 complement(516878..518245) 1 NC_016902.1 KEGG: eoh:ECO103_3968 putative cryptic C4-dicarboxylate transporter DcuD; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like; anaerobic c4-dicarboxylate antiporter 518245 11775504 EKO11_0497 Escherichia coli KO11FL anaerobic c4-dicarboxylate antiporter YP_005276217.1 516878 R 595495 CDS YP_005276218.1 378711325 11775505 518625..519416 1 NC_016902.1 KEGG: ebd:ECBD_0521 transcriptional regulator NanR; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 519416 11775505 EKO11_0498 Escherichia coli KO11FL GntR family transcriptional regulator YP_005276218.1 518625 D 595495 CDS YP_005276219.1 378711326 11775506 519538..520431 1 NC_016902.1 KEGG: sdy:SDY_3400 N-acetylneuraminate lyase; TIGRFAM: N-acetylneuraminate lyase; PFAM: dihydrodipicolinate synthetase; N-acetylneuraminate lyase 520431 11775506 EKO11_0499 Escherichia coli KO11FL N-acetylneuraminate lyase YP_005276219.1 519538 D 595495 CDS YP_005276220.1 378711327 11775507 520540..522030 1 NC_016902.1 KEGG: sbc:SbBS512_E3552 putative sialic acid transporter; TIGRFAM: sialic acid transporter; PFAM: major facilitator superfamily MFS_1; sialic acid transporter 522030 11775507 EKO11_0500 Escherichia coli KO11FL sialic acid transporter YP_005276220.1 520540 D 595495 CDS YP_005276221.1 378711328 11775508 522078..522767 1 NC_016902.1 KEGG: sbc:SbBS512_E3553 N-acetylmannosamine-6-phosphate 2-epimerase; PFAM: N-acetylmannosamine-6-phosphate epimerase; N-acylglucosamine-6-phosphate 2-epimerase 522767 11775508 EKO11_0501 Escherichia coli KO11FL N-acylglucosamine-6-phosphate 2-epimerase YP_005276221.1 522078 D 595495 CDS YP_005276222.1 378711329 11779312 522764..523639 1 NC_016902.1 PFAM: ROK family protein; KEGG: ebd:ECBD_0525 N-acetylmannosamine kinase; ROK family protein 523639 11779312 EKO11_0502 Escherichia coli KO11FL ROK family protein YP_005276222.1 522764 D 595495 CDS YP_005276223.1 378711330 11775509 523636..524100 1 NC_016902.1 PFAM: Conserved hypothetical protein CHP00022; KEGG: sfv:SFV_3246 hypothetical protein; hypothetical protein 524100 11775509 EKO11_0503 Escherichia coli KO11FL hypothetical protein YP_005276223.1 523636 D 595495 CDS YP_005276224.1 378711331 11775510 complement(524160..525287) 1 NC_016902.1 PFAM: protein of unknown function DUF1016; KEGG: eoh:ECO103_3961 hypothetical protein; hypothetical protein 525287 11775510 EKO11_0504 Escherichia coli KO11FL hypothetical protein YP_005276224.1 524160 R 595495 CDS YP_005276225.1 378711332 11779313 complement(525471..526889) 1 NC_016902.1 KEGG: sbc:SbBS512_E3557 glutamate synthase subunit beta; TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase, small subunit 526889 11779313 EKO11_0505 Escherichia coli KO11FL glutamate synthase, small subunit YP_005276225.1 525471 R 595495 CDS YP_005276226.1 378711333 11775511 complement(526902..531455) 1 NC_016902.1 KEGG: eoh:ECO103_3959 glutamate synthase subunit alpha; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase (ferredoxin) 531455 11775511 EKO11_0506 Escherichia coli KO11FL glutamate synthase (ferredoxin) YP_005276226.1 526902 R 595495 CDS YP_005276227.1 378711334 11775512 532037..532966 1 NC_016902.1 TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: eoh:ECO103_3958 putative Fe-S oxidoreductase; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 532966 11775512 EKO11_0507 Escherichia coli KO11FL hypothetical protein YP_005276227.1 532037 D 595495 CDS YP_005276228.1 378711335 11779314 533062..535398 1 NC_016902.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; KEGG: sbo:SBO_3172 aerobic respiration control sensor protein ArcB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; Hpt domain protein; multi-sensor hybrid histidine kinase 535398 11779314 EKO11_0508 Escherichia coli KO11FL multi-sensor hybrid histidine kinase YP_005276228.1 533062 D 595495 CDS YP_005276229.1 378711336 11775513 535628..536281 1 NC_016902.1 PFAM: ThiJ/PfpI domain-containing protein; KEGG: sbc:SbBS512_E3561 isoprenoid biosynthesis protein with amidotransferase-like domain; ThiJ/PfpI domain-containing protein 536281 11775513 EKO11_0509 Escherichia coli KO11FL ThiJ/PfpI domain-containing protein YP_005276229.1 535628 D 595495 CDS YP_005276230.1 378711337 11775514 536278..537006 1 NC_016902.1 KEGG: ebd:ECBD_0534 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; monofunctional biosynthetic peptidoglycan transglycosylase 537006 11775514 EKO11_0510 Escherichia coli KO11FL monofunctional biosynthetic peptidoglycan transglycosylase YP_005276230.1 536278 D 595495 CDS YP_005276231.1 378711338 11775515 complement(537003..537635) 1 NC_016902.1 PFAM: PhoP regulatory network protein YrbL; KEGG: sfx:S3465 hypothetical protein; PhoP regulatory network protein YrbL 537635 11775515 EKO11_0511 Escherichia coli KO11FL PhoP regulatory network protein YrbL YP_005276231.1 537003 R 595495 CDS YP_005276232.1 378711339 11775516 complement(537849..538121) 1 NC_016902.1 KEGG: sdy:SDY_3387 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; phosphotransferase system, phosphocarrier protein HPr 538121 11775516 EKO11_0512 Escherichia coli KO11FL phosphotransferase system, phosphocarrier protein HPr YP_005276232.1 537849 R 595495 CDS YP_005276233.1 378711340 11775517 complement(538118..538972) 1 NC_016902.1 KEGG: sbc:SbBS512_E3565 hypothetical protein; hypothetical protein 538972 11775517 EKO11_0513 Escherichia coli KO11FL hypothetical protein YP_005276233.1 538118 R 595495 CDS YP_005276234.1 378711341 11775518 complement(539018..539509) 1 NC_016902.1 KEGG: sbc:SbBS512_E3566 PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN; TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 539509 11775518 EKO11_0514 Escherichia coli KO11FL PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_005276234.1 539018 R 595495 CDS YP_005276235.1 378711342 11775519 complement(539627..539914) 1 NC_016902.1 KEGG: sdy:SDY_3384 putative sigma(54) modulation protein; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 539914 11775519 EKO11_0515 Escherichia coli KO11FL sigma 54 modulation protein/ribosomal protein S30EA YP_005276235.1 539627 R 595495 CDS YP_005276236.1 378711343 11775520 complement(539937..541370) 1 NC_016902.1 KEGG: sbc:SbBS512_E3568 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor core-binding region; sigma-54 factor; sigma-54 DNA-binding domain protein; RNA polymerase sigma 54 subunit RpoN 541370 11775520 EKO11_0516 Escherichia coli KO11FL RNA polymerase sigma 54 subunit RpoN YP_005276236.1 539937 R 595495 CDS YP_005276237.1 378711344 11775521 complement(541418..542143) 1 NC_016902.1 KEGG: sdy:SDY_3382 putative ABC transporter ATP-binding protein YhbG; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 542143 11775521 EKO11_0517 Escherichia coli KO11FL ABC transporter YP_005276237.1 541418 R 595495 CDS YP_005276238.1 378711345 11775522 complement(542150..542707) 1 NC_016902.1 KEGG: sdy:SDY_3381 lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; lipopolysaccharide transport periplasmic protein LptA 542707 11775522 EKO11_0518 Escherichia coli KO11FL lipopolysaccharide transport periplasmic protein LptA YP_005276238.1 542150 R 595495 CDS YP_005276239.1 378711346 11775523 complement(542676..543251) 1 NC_016902.1 PFAM: protein of unknown function DUF1239; KEGG: sdy:SDY_3380 hypothetical protein; hypothetical protein 543251 11775523 EKO11_0519 Escherichia coli KO11FL hypothetical protein YP_005276239.1 542676 R 595495 CDS YP_005276240.1 378711347 11775524 complement(543248..543814) 1 NC_016902.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: sfv:SFV_3228 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 543814 11775524 EKO11_0520 Escherichia coli KO11FL 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_005276240.1 543248 R 595495 CDS YP_005276241.1 378711348 11775525 complement(543835..544821) 1 NC_016902.1 TIGRFAM: KpsF/GutQ family protein; KEGG: sbc:SbBS512_E3573 D-arabinose 5-phosphate isomerase; PFAM: sugar isomerase (SIS); CBS domain containing protein; KpsF/GutQ family protein 544821 11775525 EKO11_0521 Escherichia coli KO11FL KpsF/GutQ family protein YP_005276241.1 543835 R 595495 CDS YP_005276242.1 378711349 11775526 complement(544835..545812) 1 NC_016902.1 KEGG: sbo:SBO_3186 putative calcium/sodium:proton antiporter; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; CaCA family Na+/Ca+ antiporter 545812 11775526 EKO11_0522 Escherichia coli KO11FL CaCA family Na+/Ca+ antiporter YP_005276242.1 544835 R 595495 CDS YP_005276243.1 378711350 11775527 546022..546831 1 NC_016902.1 KEGG: sdy:SDY_3376 putative ABC transporter ATP-binding protein YrbF; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 546831 11775527 EKO11_0523 Escherichia coli KO11FL ABC transporter YP_005276243.1 546022 D 595495 CDS YP_005276244.1 378711351 11775528 546839..547621 1 NC_016902.1 PFAM: protein of unknown function DUF140; KEGG: sbc:SbBS512_E3576 toluene ABC transporter, permease protein; hypothetical protein 547621 11775528 EKO11_0524 Escherichia coli KO11FL hypothetical protein YP_005276244.1 546839 D 595495 CDS YP_005276245.1 378711352 11775529 547626..548177 1 NC_016902.1 PFAM: Mammalian cell entry related domain protein; KEGG: sbc:SbBS512_E3577 Mce family protein; Mammalian cell entry related domain-containing protein 548177 11775529 EKO11_0525 Escherichia coli KO11FL Mammalian cell entry related domain-containing protein YP_005276245.1 547626 D 595495 CDS YP_005276246.1 378711353 11775530 548196..548831 1 NC_016902.1 PFAM: toluene tolerance family protein; KEGG: sbc:SbBS512_E3578 toluene tolerance protein Ttg2D; toluene tolerance family protein 548831 11775530 EKO11_0526 Escherichia coli KO11FL toluene tolerance family protein YP_005276246.1 548196 D 595495 CDS YP_005276247.1 378711354 11775531 548831..549124 1 NC_016902.1 KEGG: sdy:SDY_3372 hypothetical protein; hypothetical protein 549124 11775531 EKO11_0527 Escherichia coli KO11FL hypothetical protein YP_005276247.1 548831 D 595495 CDS YP_005276248.1 378711355 11775532 549269..549538 1 NC_016902.1 PFAM: BolA family protein; KEGG: sdy:SDY_3371 hypothetical protein; BolA family protein 549538 11775532 EKO11_0528 Escherichia coli KO11FL BolA family protein YP_005276248.1 549269 D 595495 CDS YP_005276249.1 378711356 11775533 549593..550852 1 NC_016902.1 KEGG: ssn:SSON_3337 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); UDP-N-acetylglucosamine 1-carboxyvinyltransferase 550852 11775533 EKO11_0529 Escherichia coli KO11FL UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_005276249.1 549593 D 595495 CDS YP_005276250.1 378711357 11775534 complement(550900..551178) 1 NC_016902.1 KEGG: ssn:SSON_3336 DNA-binding transcriptional regulator Nlp; putative transcriptional regulator, Nlp 551178 11775534 EKO11_0530 Escherichia coli KO11FL putative transcriptional regulator, Nlp YP_005276250.1 550900 R 595495 CDS YP_005276251.1 378711358 11775535 complement(551406..552377) 1 NC_016902.1 PFAM: Polyprenyl synthetase; KEGG: sbo:SBO_3195 octaprenyl diphosphate synthase; polyprenyl synthetase 552377 11775535 EKO11_0531 Escherichia coli KO11FL polyprenyl synthetase YP_005276251.1 551406 R 595495 CDS YP_005276252.1 378711359 11775536 552636..552947 1 NC_016902.1 KEGG: cro:ROD_46342 50S ribosomal subunit protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; 50S ribosomal protein L21 552947 11775536 EKO11_0532 Escherichia coli KO11FL 50S ribosomal protein L21 YP_005276252.1 552636 D 595495 CDS YP_005276253.1 378711360 11775537 552968..553225 1 NC_016902.1 KEGG: sdy:SDY_3366 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; 50S ribosomal protein L27 553225 11775537 EKO11_0533 Escherichia coli KO11FL 50S ribosomal protein L27 YP_005276253.1 552968 D 595495 CDS YP_005276254.1 378711361 11775538 553352..554317 1 NC_016902.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbo:SBO_3198 hypothetical protein; hypothetical protein 554317 11775538 EKO11_0534 Escherichia coli KO11FL hypothetical protein YP_005276254.1 553352 D 595495 CDS YP_005276255.1 378711362 11775539 554333..555505 1 NC_016902.1 KEGG: sbc:SbBS512_E3587 GTPase ObgE; TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP-binding protein Obg/CgtA 555505 11775539 EKO11_0535 Escherichia coli KO11FL GTP-binding protein Obg/CgtA YP_005276255.1 554333 D 595495 CDS YP_005276256.1 378711363 11775540 complement(555545..556978) 1 NC_016902.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; KEGG: sbc:SbBS512_E3588 D-alanyl-D-alanine carboxypeptidase/endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 556978 11775540 EKO11_0536 Escherichia coli KO11FL D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_005276256.1 555545 R 595495 CDS YP_005276257.1 378711364 11775541 557226..557702 1 NC_016902.1 KEGG: sdy:SDY_3362 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein; transcription elongation factor GreA 557702 11775541 EKO11_0537 Escherichia coli KO11FL transcription elongation factor GreA YP_005276257.1 557226 D 595495 CDS YP_005276258.1 378711365 11775542 complement(557858..558151) 1 NC_016902.1 PFAM: protein of unknown function UPF0044; KEGG: sbc:SbBS512_E3590 RNA-binding protein YhbY; hypothetical protein 558151 11775542 EKO11_0538 Escherichia coli KO11FL hypothetical protein YP_005276258.1 557858 R 595495 CDS YP_005276259.1 378711366 11775543 558277..558906 1 NC_016902.1 KEGG: cko:CKO_04580 23S rRNA methyltransferase J; TIGRFAM: ribosomal RNA large subunit methyltransferase J; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA large subunit methyltransferase J 558906 11775543 EKO11_0539 Escherichia coli KO11FL ribosomal RNA large subunit methyltransferase J YP_005276259.1 558277 D 595495 CDS YP_005276260.1 378711367 11775544 558997..560940 1 NC_016902.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: ebd:ECBD_0564 ATP-dependent metalloprotease; PFAM: peptidase M41; AAA ATPase central domain protein; ATP-dependent metalloprotease FtsH 560940 11775544 EKO11_0540 Escherichia coli KO11FL ATP-dependent metalloprotease FtsH YP_005276260.1 558997 D 595495 CDS YP_005276261.1 378711368 11775545 561030..561878 1 NC_016902.1 TIGRFAM: dihydropteroate synthase; KEGG: ssn:SSON_3325 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 561878 11775545 EKO11_0541 Escherichia coli KO11FL dihydropteroate synthase YP_005276261.1 561030 D 595495 CDS YP_005276262.1 378711369 11775546 561871..563208 1 NC_016902.1 KEGG: sbc:SbBS512_E3594 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucosamine mutase 563208 11775546 EKO11_0542 Escherichia coli KO11FL phosphoglucosamine mutase YP_005276262.1 561871 D 595495 CDS YP_005276263.1 378711370 11775547 563388..563768 1 NC_016902.1 manually curated; TIGRFAM: preprotein translocase, SecG subunit; KEGG: cro:ROD_46581 protein-export membrane protein; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 563768 11775547 EKO11_0543 Escherichia coli KO11FL preprotein translocase subunit SecG YP_005276263.1 563388 D 595495 CDS YP_005276264.1 378711371 11779315 564328..565953 1 NC_016902.1 PFAM: sulfatase; KEGG: ebd:ECBD_0568 sulfatase; sulfatase 565953 11779315 EKO11_0544 Escherichia coli KO11FL sulfatase YP_005276264.1 564328 D 595495 CDS YP_005276265.1 378711372 11775549 complement(565961..567304) 1 NC_016902.1 TIGRFAM: argininosuccinate synthase; KEGG: eoi:ECO111_3995 argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase 567304 11775549 EKO11_0545 Escherichia coli KO11FL argininosuccinate synthase YP_005276265.1 565961 R 595495 CDS YP_005276266.1 378711373 11779316 567923..568387 1 NC_016902.1 KEGG: eok:G2583_3895 hypothetical protein; manually curated; PFAM: protein of unknown function DUF150; hypothetical protein 568387 11779316 EKO11_0546 Escherichia coli KO11FL hypothetical protein YP_005276266.1 567923 D 595495 CDS YP_005276267.1 378711374 11775551 568415..569902 1 NC_016902.1 KEGG: ssn:SSON_3315 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein; NusA antitermination factor 569902 11775551 EKO11_0547 Escherichia coli KO11FL NusA antitermination factor YP_005276267.1 568415 D 595495 CDS YP_005276268.1 378711375 11775552 569927..572599 1 NC_016902.1 KEGG: ebd:ECBD_0572 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Initiation factor 2 associated domain protein ; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein; translation initiation factor IF-2 572599 11775552 EKO11_0548 Escherichia coli KO11FL translation initiation factor IF-2 YP_005276268.1 569927 D 595495 CDS YP_005276269.1 378711376 11779317 572763..573164 1 NC_016902.1 KEGG: sdy:SDY_3346 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; ribosome-binding factor A 573164 11779317 EKO11_0549 Escherichia coli KO11FL ribosome-binding factor A YP_005276269.1 572763 D 595495 CDS YP_005276270.1 378711377 11775553 573164..574108 1 NC_016902.1 KEGG: ssn:SSON_3312 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 574108 11775553 EKO11_0550 Escherichia coli KO11FL tRNA pseudouridine synthase B YP_005276270.1 573164 D 595495 CDS YP_005276271.1 378711378 11775554 574257..574526 1 NC_016902.1 KEGG: sdy:SDY_3344 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; 30S ribosomal protein S15 574526 11775554 EKO11_0551 Escherichia coli KO11FL 30S ribosomal protein S15 YP_005276271.1 574257 D 595495 CDS YP_005276272.1 378711379 11779318 574773..576908 1 NC_016902.1 SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: ssn:SSON_3310 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; polyribonucleotide nucleotidyltransferase 576908 11779318 EKO11_0552 Escherichia coli KO11FL polyribonucleotide nucleotidyltransferase YP_005276272.1 574773 D 595495 CDS YP_005276273.1 378711380 11775555 577017..577901 1 NC_016902.1 KEGG: ssn:SSON_3309 lipoprotein NlpI; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 577901 11775555 EKO11_0553 Escherichia coli KO11FL hypothetical protein YP_005276273.1 577017 D 595495 CDS YP_005276274.1 378711381 11775556 578081..579970 1 NC_016902.1 KEGG: eoi:ECO111_3986 ATP-dependent RNA helicase DeaD; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 579970 11775556 EKO11_0554 Escherichia coli KO11FL DEAD/DEAH box helicase YP_005276274.1 578081 D 595495 CDS YP_005276275.1 378711382 11779319 580124..581368 1 NC_016902.1 KEGG: ssn:SSON_3307 tryptophan permease; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease; aromatic amino acid transporter 581368 11779319 EKO11_0555 Escherichia coli KO11FL aromatic amino acid transporter YP_005276275.1 580124 D 595495 CDS YP_005276276.1 378711383 11775557 complement(581486..582493) 1 NC_016902.1 KEGG: sbo:SBO_3222 hypothetical protein; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup; luciferase family oxidoreductase 582493 11775557 EKO11_0556 Escherichia coli KO11FL luciferase family oxidoreductase YP_005276276.1 581486 R 595495 CDS YP_005276277.1 378711384 11775559 complement(582699..583577) 1 NC_016902.1 PFAM: peptidase U32; KEGG: eok:G2583_3883 hypothetical protein; peptidase U32 583577 11775559 EKO11_0558 Escherichia coli KO11FL peptidase U32 YP_005276277.1 582699 R 595495 CDS YP_005276278.1 378711385 11775560 complement(583586..584581) 1 NC_016902.1 PFAM: peptidase U32; KEGG: eoh:ECO103_3907 putative peptidase; peptidase U32 584581 11775560 EKO11_0559 Escherichia coli KO11FL peptidase U32 YP_005276278.1 583586 R 595495 CDS YP_005276279.1 378711386 11775561 584790..585314 1 NC_016902.1 PFAM: Sterol-binding domain protein; KEGG: sdy:SDY_3336 hypothetical protein; Sterol-binding domain-containing protein 585314 11775561 EKO11_0560 Escherichia coli KO11FL Sterol-binding domain-containing protein YP_005276279.1 584790 D 595495 CDS YP_005276280.1 378711387 11775562 585308..585811 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_3335 hypothetical protein; N-acetyltransferase GCN5 585811 11775562 EKO11_0561 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005276280.1 585308 D 595495 CDS YP_005276281.1 378711388 11775563 complement(585798..586100) 1 NC_016902.1 KEGG: sdy:SDY_3334 GIY-YIG nuclease superfamily protein; PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain-containing protein 586100 11775563 EKO11_0562 Escherichia coli KO11FL Excinuclease ABC C subunit domain-containing protein YP_005276281.1 585798 R 595495 CDS YP_005276282.1 378711389 11775564 586151..586594 1 NC_016902.1 KEGG: sfv:SFV_3184 hypothetical protein; hypothetical protein 586594 11775564 EKO11_0563 Escherichia coli KO11FL hypothetical protein YP_005276282.1 586151 D 595495 CDS YP_005276283.1 378711390 11779320 complement(586574..587092) 1 NC_016902.1 KEGG: sdy:SDY_3332 hypothetical protein; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain-containing protein; Pfpi family intracellular protease 587092 11779320 EKO11_0564 Escherichia coli KO11FL Pfpi family intracellular protease YP_005276283.1 586574 R 595495 CDS YP_005276284.1 378711391 11775565 587220..587855 1 NC_016902.1 PFAM: Semialdehyde dehydrogenase NAD - binding; KEGG: eoh:ECO103_3901 putative nucleoside-diphosphate-sugar epimerase; semialdehyde dehydrogenase NAD-binding protein 587855 11775565 EKO11_0565 Escherichia coli KO11FL semialdehyde dehydrogenase NAD-binding protein YP_005276284.1 587220 D 595495 CDS YP_005276285.1 378711392 11775566 587928..588968 1 NC_016902.1 PFAM: permease; KEGG: eoh:ECO103_3900 putative permease; permease 588968 11775566 EKO11_0566 Escherichia coli KO11FL permease YP_005276285.1 587928 D 595495 CDS YP_005276286.1 378711393 11775567 complement(589082..589657) 1 NC_016902.1 KEGG: ebd:ECBD_0590 hypothetical protein; PFAM: transport-associated; SMART: Transport-associated and nodulation region; transport-associated protein 589657 11775567 EKO11_0567 Escherichia coli KO11FL transport-associated protein YP_005276286.1 589082 R 595495 CDS YP_005276287.1 378711394 11775568 complement(589667..590257) 1 NC_016902.1 PFAM: sugar isomerase (SIS); KEGG: efe:EFER_4346 DnaA initiator-associating protein DiaA; sugar isomerase (SIS) 590257 11775568 EKO11_0568 Escherichia coli KO11FL sugar isomerase (SIS) YP_005276287.1 589667 R 595495 CDS YP_005276288.1 378711395 11775569 complement(590277..590672) 1 NC_016902.1 PFAM: Uncharacterised protein family UPF0102; KEGG: ssn:SSON_3294 hypothetical protein; hypothetical protein 590672 11775569 EKO11_0569 Escherichia coli KO11FL hypothetical protein YP_005276288.1 590277 R 595495 CDS YP_005276289.1 378711396 11775570 complement(590630..592666) 1 NC_016902.1 KEGG: eoi:ECO111_3971 hypothetical protein; hypothetical protein 592666 11775570 EKO11_0570 Escherichia coli KO11FL hypothetical protein YP_005276289.1 590630 R 595495 CDS YP_005276290.1 378711397 11775571 592730..593590 1 NC_016902.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: eoh:ECO103_3895 putative methyltransferase; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 593590 11775571 EKO11_0571 Escherichia coli KO11FL uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_005276290.1 592730 D 595495 CDS YP_005276291.1 378711398 11775572 complement(593633..594724) 1 NC_016902.1 KEGG: eoj:ECO26_4250 putative fimbrial-like adhesin protein; putative fimbrial-like adhesin protein 594724 11775572 EKO11_0572 Escherichia coli KO11FL putative fimbrial-like adhesin protein YP_005276291.1 593633 R 595495 CDS YP_005276292.1 378711399 11775573 complement(594735..597251) 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoi:ECO111_3968 putative outer membrane protein; fimbrial biogenesis outer membrane usher protein 597251 11775573 EKO11_0573 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005276292.1 594735 R 595495 CDS YP_005276293.1 378711400 11775574 complement(597281..597976) 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: eoh:ECO103_3890 putative periplasmic pilin chaperone; Pili assembly chaperone, N-terminal protein 597976 11775574 EKO11_0574 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005276293.1 597281 R 595495 CDS YP_005276294.1 378711401 11775575 complement(598056..598640) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eoh:ECO103_3889 putative fimbrial-like adhesin protein; fimbrial protein domain-containing protein 598640 11775575 EKO11_0575 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005276294.1 598056 R 595495 CDS YP_005276295.1 378711402 11775576 complement(599040..599741) 1 NC_016902.1 KEGG: sfx:S3393 galactosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; glucosamine-6-phosphate deaminase 599741 11775576 EKO11_0576 Escherichia coli KO11FL glucosamine-6-phosphate deaminase YP_005276295.1 599040 R 595495 CDS YP_005276296.1 378711403 11775577 complement(599796..600587) 1 NC_016902.1 KEGG: sfx:S3392 PTS system N-acetylgalactosamine-specific transporter subunit IID; TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; PTS system mannose/fructose/sorbose family transporter subunit IID 600587 11775577 EKO11_0577 Escherichia coli KO11FL PTS system mannose/fructose/sorbose family transporter subunit IID YP_005276296.1 599796 R 595495 CDS YP_005276297.1 378711404 11775578 complement(600577..601380) 1 NC_016902.1 KEGG: ebd:ECBD_0601 PTS system N-acetylgalactosamine-specific transporter subunit IIC; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; PTS system mannose/fructose/sorbose family transporter subunit IIC 601380 11775578 EKO11_0578 Escherichia coli KO11FL PTS system mannose/fructose/sorbose family transporter subunit IIC YP_005276297.1 600577 R 595495 CDS YP_005276298.1 378711405 11775579 complement(601419..601895) 1 NC_016902.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; KEGG: ebd:ECBD_0602 PTS system N-acetylgalactosamine-specific transporter subunit IIB; PFAM: PTS system sorbose subfamily IIB component; PTS system mannose/fructose/sorbose family transporter subunit IIB 601895 11775579 EKO11_0579 Escherichia coli KO11FL PTS system mannose/fructose/sorbose family transporter subunit IIB YP_005276298.1 601419 R 595495 CDS YP_005276299.1 378711406 11775580 complement(602062..602922) 1 NC_016902.1 TIGRFAM: class II aldolase, tagatose bisphosphate family; ketose-bisphosphate aldolase; KEGG: ebd:ECBD_0603 tagatose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; tagatose bisphosphate family class II aldolase 602922 11775580 EKO11_0580 Escherichia coli KO11FL tagatose bisphosphate family class II aldolase YP_005276299.1 602062 R 595495 CDS YP_005276300.1 378711407 11775581 complement(602935..604089) 1 NC_016902.1 KEGG: ebw:BWG_2840 tagatose-6-phosphate ketose/aldose isomerase; TIGRFAM: sugar isomerase, AgaS family; PFAM: sugar isomerase (SIS); sugar isomerase 604089 11775581 EKO11_0581 Escherichia coli KO11FL sugar isomerase YP_005276300.1 602935 R 595495 CDS YP_005276301.1 378711408 11775582 complement(604439..605572) 1 NC_016902.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: eoi:ECO111_3959 N-acetylgalactosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 605572 11775582 EKO11_0582 Escherichia coli KO11FL N-acetylglucosamine-6-phosphate deacetylase YP_005276301.1 604439 R 595495 CDS YP_005276302.1 378711409 11779321 complement(605569..606003) 1 NC_016902.1 PFAM: PTS system fructose subfamily IIA component; KEGG: ebd:ECBD_0606 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 606003 11779321 EKO11_0583 Escherichia coli KO11FL PTS system fructose subfamily transporter subunit IIA YP_005276302.1 605569 R 595495 CDS YP_005276303.1 378711410 11775583 complement(606021..606899) 1 NC_016902.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: efe:EFER_4358 putative hexose/hexosamine family PTS permease IID component; PTS system mannose/fructose/sorbose family transporter subunit IID 606899 11775583 EKO11_0584 Escherichia coli KO11FL PTS system mannose/fructose/sorbose family transporter subunit IID YP_005276303.1 606021 R 595495 CDS YP_005276304.1 378711411 11779322 complement(606889..607668) 1 NC_016902.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: efe:EFER_4359 putative enzyme IIC component of PTS; PTS sorbose-specific transporter subunit IIC 607668 11779322 EKO11_0585 Escherichia coli KO11FL PTS sorbose-specific transporter subunit IIC YP_005276304.1 606889 R 595495 CDS YP_005276305.1 378711412 11779323 complement(607679..608152) 1 NC_016902.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; KEGG: sfx:S3383 PTS system N-acetylgalactosamine-specific transporter subunit IIB; PFAM: PTS system sorbose subfamily IIB component; PTS system mannose/fructose/sorbose family transporter subunit IIB 608152 11779323 EKO11_0586 Escherichia coli KO11FL PTS system mannose/fructose/sorbose family transporter subunit IIB YP_005276305.1 607679 R 595495 CDS YP_005276306.1 378711413 11775584 complement(608175..609455) 1 NC_016902.1 KEGG: eoi:ECO111_3954 tagatose 6-phosphate aldolase 1, KbaZ subunit; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; D-tagatose-bisphosphate aldolase non-catalytic subunit 609455 11775584 EKO11_0587 Escherichia coli KO11FL D-tagatose-bisphosphate aldolase non-catalytic subunit YP_005276306.1 608175 R 595495 CDS YP_005276307.1 378711414 11775585 609704..610513 1 NC_016902.1 KEGG: efe:EFER_4362 DNA-binding transcriptional regulator AgaR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 610513 11775585 EKO11_0588 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005276307.1 609704 D 595495 CDS YP_005276308.1 378711415 11775586 complement(610568..611032) 1 NC_016902.1 KEGG: eoh:ECO103_3875 hypothetical protein; hypothetical protein 611032 11775586 EKO11_0589 Escherichia coli KO11FL hypothetical protein YP_005276308.1 610568 R 595495 CDS YP_005276309.1 378711416 11775587 complement(611032..611367) 1 NC_016902.1 KEGG: eoh:ECO103_3874 putative regulator PrlF; putative regulator PrlF 611367 11775587 EKO11_0590 Escherichia coli KO11FL putative regulator PrlF YP_005276309.1 611032 R 595495 CDS YP_005276310.1 378711417 11775588 complement(611516..613087) 1 NC_016902.1 TIGRFAM: galactarate dehydratase; KEGG: eoh:ECO103_3873 (D)-galactarate dehydrogenase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase 613087 11775588 EKO11_0591 Escherichia coli KO11FL galactarate dehydratase YP_005276310.1 611516 R 595495 CDS YP_005276311.1 378711418 11775589 613462..614796 1 NC_016902.1 KEGG: ebd:ECBD_0615 D-galactonate transporter; TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter 614796 11775589 EKO11_0592 Escherichia coli KO11FL d-galactonate transporter YP_005276311.1 613462 D 595495 CDS YP_005276312.1 378711419 11775590 614812..615582 1 NC_016902.1 TIGRFAM: 2-dehydro-3-deoxyglucarate aldolase; KEGG: sbo:SBO_2991 alpha-dehydro-beta-deoxy-D-glucarate aldolase; PFAM: HpcH/HpaI aldolase; 2-dehydro-3-deoxyglucarate aldolase 615582 11775590 EKO11_0593 Escherichia coli KO11FL 2-dehydro-3-deoxyglucarate aldolase YP_005276312.1 614812 D 595495 CDS YP_005276313.1 378711420 11775591 615612..616502 1 NC_016902.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: sbo:SBO_2990 tartronate semialdehyde reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 616502 11775591 EKO11_0594 Escherichia coli KO11FL 2-hydroxy-3-oxopropionate reductase YP_005276313.1 615612 D 595495 CDS YP_005276314.1 378711421 11775592 616518..617744 1 NC_016902.1 PFAM: glycerate kinase; manually curated; KEGG: eok:G2583_3846 hypothetical protein; TIGRFAM: glycerate kinase; glycerate kinase 617744 11775592 EKO11_0595 Escherichia coli KO11FL glycerate kinase YP_005276314.1 616518 D 595495 CDS YP_005276315.1 378711422 11775594 complement(618767..619954) 1 NC_016902.1 KEGG: eoh:ECO103_3868 hypothetical protein; hypothetical protein 619954 11775594 EKO11_0596 Escherichia coli KO11FL hypothetical protein YP_005276315.1 618767 R 595495 CDS YP_005276316.1 378711423 11775595 complement(619976..620515) 1 NC_016902.1 KEGG: eoh:ECO103_3867 hypothetical protein; hypothetical protein 620515 11775595 EKO11_0597 Escherichia coli KO11FL hypothetical protein YP_005276316.1 619976 R 595495 CDS YP_005276317.1 378711424 11775596 complement(620771..621127) 1 NC_016902.1 manually curated; KEGG: sbo:SBO_2984 DNA-binding transcriptional activator TdcR; DNA-binding transcriptional activator TdcR 621127 11775596 EKO11_0598 Escherichia coli KO11FL DNA-binding transcriptional activator TdcR YP_005276317.1 620771 R 595495 CDS YP_005276318.1 378711425 11775597 621304..622242 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sdy:SDY_3310 DNA-binding transcriptional activator TdcA; LysR family transcriptional regulator 622242 11775597 EKO11_0599 Escherichia coli KO11FL LysR family transcriptional regulator YP_005276318.1 621304 D 595495 CDS YP_005276319.1 378711426 11775598 622341..623330 1 NC_016902.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sdy:SDY_3309 threonine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta 623330 11775598 EKO11_0600 Escherichia coli KO11FL pyridoxal-5'-phosphate-dependent protein subunit beta YP_005276319.1 622341 D 595495 CDS YP_005276320.1 378711427 11775599 623352..624683 1 NC_016902.1 TIGRFAM: serine transporter; KEGG: sbc:SbBS512_E3241 threonine/serine transporter TdcC; serine transporter 624683 11775599 EKO11_0601 Escherichia coli KO11FL serine transporter YP_005276320.1 623352 D 595495 CDS YP_005276321.1 378711428 11779324 624709..625917 1 NC_016902.1 KEGG: sbo:SBO_2980 propionate/acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 625917 11779324 EKO11_0602 Escherichia coli KO11FL acetate kinase YP_005276321.1 624709 D 595495 CDS YP_005276322.1 378711429 11775600 625951..628245 1 NC_016902.1 TIGRFAM: formate acetyltransferase; KEGG: ebd:ECBD_0626 formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; formate acetyltransferase 628245 11775600 EKO11_0603 Escherichia coli KO11FL formate acetyltransferase YP_005276322.1 625951 D 595495 CDS YP_005276323.1 378711430 11779325 628259..628648 1 NC_016902.1 KEGG: sbc:SbBS512_E3244 hypothetical protein; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 628648 11779325 EKO11_0604 Escherichia coli KO11FL endoribonuclease L-PSP YP_005276323.1 628259 D 595495 CDS YP_005276324.1 378711431 11779326 628720..630084 1 NC_016902.1 TIGRFAM: L-serine dehydratase 1; KEGG: sbc:SbBS512_E3245 L-serine ammonia-lyase TdcG; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 630084 11779326 EKO11_0605 Escherichia coli KO11FL L-serine dehydratase 1 YP_005276324.1 628720 D 595495 CDS YP_005276325.1 378711432 11775601 630359..631690 1 NC_016902.1 TIGRFAM: serine transporter; KEGG: ssn:SSON_3268 putative transport system permease protein; serine transporter 631690 11775601 EKO11_0606 Escherichia coli KO11FL serine transporter YP_005276325.1 630359 D 595495 CDS YP_005276326.1 378711433 11775602 631718..633028 1 NC_016902.1 KEGG: eoh:ECO103_3857 hypothetical protein; hypothetical protein 633028 11775602 EKO11_0607 Escherichia coli KO11FL hypothetical protein YP_005276326.1 631718 D 595495 CDS YP_005276327.1 378711434 11775603 complement(633240..633404) 1 NC_016902.1 KEGG: sdy:SDY_3299 hypothetical protein; hypothetical protein 633404 11775603 EKO11_0608 Escherichia coli KO11FL hypothetical protein YP_005276327.1 633240 R 595495 CDS YP_005276328.1 378711435 11775604 complement(633427..634128) 1 NC_016902.1 PFAM: Pirin domain protein; KEGG: sbc:SbBS512_E3251 pirin family protein; Pirin domain-containing protein 634128 11775604 EKO11_0609 Escherichia coli KO11FL Pirin domain-containing protein YP_005276328.1 633427 R 595495 CDS YP_005276329.1 378711436 11775605 634233..635129 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbo:SBO_2972 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 635129 11775605 EKO11_0610 Escherichia coli KO11FL LysR family transcriptional regulator YP_005276329.1 634233 D 595495 CDS YP_005276330.1 378711437 11775606 complement(635180..635536) 1 NC_016902.1 PFAM: protein of unknown function DUF805; KEGG: eoh:ECO103_3853 putative inner membrane protein; hypothetical protein 635536 11775606 EKO11_0611 Escherichia coli KO11FL hypothetical protein YP_005276330.1 635180 R 595495 CDS YP_005276331.1 378711438 11775607 complement(635778..636143) 1 NC_016902.1 PFAM: protein of unknown function DUF805; KEGG: sbc:SbBS512_E3258 putative inner membrane protein YhaH; hypothetical protein 636143 11775607 EKO11_0612 Escherichia coli KO11FL hypothetical protein YP_005276331.1 635778 R 595495 CDS YP_005276332.1 378711439 11775608 complement(636436..637422) 1 NC_016902.1 KEGG: sbc:SbBS512_E3259 hypothetical protein; PFAM: Glutathione S-transferase domain; glutathione transferase 637422 11775608 EKO11_0613 Escherichia coli KO11FL glutathione transferase YP_005276332.1 636436 R 595495 CDS YP_005276333.1 378711440 11775609 complement(637492..637974) 1 NC_016902.1 PFAM: DoxX family protein; KEGG: ssn:SSON_3260 hypothetical protein; DoxX family protein 637974 11775609 EKO11_0614 Escherichia coli KO11FL DoxX family protein YP_005276333.1 637492 R 595495 CDS YP_005276334.1 378711441 11775610 complement(638070..638369) 1 NC_016902.1 KEGG: sbc:SbBS512_E3261 hypothetical protein; hypothetical protein 638369 11775610 EKO11_0615 Escherichia coli KO11FL hypothetical protein YP_005276334.1 638070 R 595495 CDS YP_005276335.1 378711442 11775611 complement(638359..638763) 1 NC_016902.1 KEGG: sbc:SbBS512_E3262 hypothetical protein; hypothetical protein 638763 11775611 EKO11_0616 Escherichia coli KO11FL hypothetical protein YP_005276335.1 638359 R 595495 CDS YP_005276336.1 378711443 11775612 complement(638766..639071) 1 NC_016902.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_3285 hypothetical protein; hypothetical protein 639071 11775612 EKO11_0617 Escherichia coli KO11FL hypothetical protein YP_005276336.1 638766 R 595495 CDS YP_005276337.1 378711444 11775613 complement(639109..639477) 1 NC_016902.1 PFAM: protein of unknown function DUF1090; KEGG: sbc:SbBS512_E3264 hypothetical protein; hypothetical protein 639477 11775613 EKO11_0618 Escherichia coli KO11FL hypothetical protein YP_005276337.1 639109 R 595495 CDS YP_005276338.1 378711445 11775614 complement(639624..640007) 1 NC_016902.1 KEGG: sbc:SbBS512_E3265 hypothetical protein; hypothetical protein 640007 11775614 EKO11_0619 Escherichia coli KO11FL hypothetical protein YP_005276338.1 639624 R 595495 CDS YP_005276339.1 378711446 11775615 complement(640011..640673) 1 NC_016902.1 PFAM: SNARE associated Golgi protein; KEGG: sdy:SDY_3282 hypothetical protein; hypothetical protein 640673 11775615 EKO11_0620 Escherichia coli KO11FL hypothetical protein YP_005276339.1 640011 R 595495 CDS YP_005276340.1 378711447 11775616 complement(641018..641794) 1 NC_016902.1 KEGG: sbo:SBO_2961 DNA-binding transcriptional repressor ExuR; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; regulatory protein GntR HTH 641794 11775616 EKO11_0621 Escherichia coli KO11FL regulatory protein GntR HTH YP_005276340.1 641018 R 595495 CDS YP_005276341.1 378711448 11779327 642090..642806 1 NC_016902.1 KEGG: eoi:ECO111_3919 putative fimbrial protein; putative fimbrial protein 642806 11779327 EKO11_0622 Escherichia coli KO11FL putative fimbrial protein YP_005276341.1 642090 D 595495 CDS YP_005276342.1 378711449 11775617 642836..643336 1 NC_016902.1 KEGG: eoh:ECO103_3841 putative fimbrial subunit; putative fimbrial subunit 643336 11775617 EKO11_0623 Escherichia coli KO11FL putative fimbrial subunit YP_005276342.1 642836 D 595495 CDS YP_005276343.1 378711450 11779328 643428..646112 1 NC_016902.1 KEGG: eoj:ECO26_4198 putative outer membrane usher protein; putative outer membrane usher protein 646112 11779328 EKO11_0624 Escherichia coli KO11FL putative outer membrane usher protein YP_005276343.1 643428 D 595495 CDS YP_005276344.1 378711451 11779329 646109..647197 1 NC_016902.1 PFAM: CblD family pilus biogenesis initiator protein; KEGG: eoh:ECO103_3839 putative minor pilin and initiator protein; CblD family pilus biogenesis initiator protein 647197 11779329 EKO11_0625 Escherichia coli KO11FL CblD family pilus biogenesis initiator protein YP_005276344.1 646109 D 595495 CDS YP_005276345.1 378711452 11775618 complement(647285..648703) 1 NC_016902.1 manually curated; TIGRFAM: d-galactonate transporter; KEGG: ebr:ECB_02962 hexuronate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter 648703 11775618 EKO11_0626 Escherichia coli KO11FL d-galactonate transporter YP_005276345.1 647285 R 595495 CDS YP_005276346.1 378711453 11775619 649066..650478 1 NC_016902.1 KEGG: eoh:ECO103_3837 glucuronate isomerase; PFAM: Glucuronate isomerase; glucuronate isomerase 650478 11775619 EKO11_0627 Escherichia coli KO11FL glucuronate isomerase YP_005276346.1 649066 D 595495 CDS YP_005276347.1 378711454 11775620 650493..651980 1 NC_016902.1 KEGG: eoi:ECO111_3913 altronate hydrolase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; altronate dehydratase 651980 11775620 EKO11_0628 Escherichia coli KO11FL altronate dehydratase YP_005276347.1 650493 D 595495 CDS YP_005276348.1 378711455 11775621 652063..652614 1 NC_016902.1 KEGG: ssn:SSON_3243 hypothetical protein; hypothetical protein 652614 11775621 EKO11_0629 Escherichia coli KO11FL hypothetical protein YP_005276348.1 652063 D 595495 CDS YP_005276349.1 378711456 11775622 complement(652619..653863) 1 NC_016902.1 PFAM: sodium:dicarboxylate symporter; KEGG: ssn:SSON_3242 serine/threonine transporter SstT; sodium:dicarboxylate symporter 653863 11775622 EKO11_0630 Escherichia coli KO11FL sodium:dicarboxylate symporter YP_005276349.1 652619 R 595495 CDS YP_005276350.1 378711457 11775623 complement(654262..655227) 1 NC_016902.1 PFAM: Integral membrane protein TerC; KEGG: eoh:ECO103_3833 putative inner membrane protein; integral membrane protein TerC 655227 11775623 EKO11_0631 Escherichia coli KO11FL integral membrane protein TerC YP_005276350.1 654262 R 595495 CDS YP_005276351.1 378711458 11775624 complement(655510..656496) 1 NC_016902.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eoi:ECO111_3909 putative NAD(P)-binding dehydrogenase; oxidoreductase domain-containing protein 656496 11775624 EKO11_0632 Escherichia coli KO11FL oxidoreductase domain-containing protein YP_005276351.1 655510 R 595495 CDS YP_005276352.1 378711459 11775625 complement(656575..657258) 1 NC_016902.1 PFAM: protein of unknown function DUF218; KEGG: eoi:ECO111_3908 putative thioredoxin-like protein; hypothetical protein 657258 11775625 EKO11_0633 Escherichia coli KO11FL hypothetical protein YP_005276352.1 656575 R 595495 CDS YP_005276353.1 378711460 11775626 complement(657335..657838) 1 NC_016902.1 PFAM: protein of unknown function DUF45; KEGG: sdy:SDY_3268 hypothetical protein; hypothetical protein 657838 11775626 EKO11_0634 Escherichia coli KO11FL hypothetical protein YP_005276353.1 657335 R 595495 CDS YP_005276354.1 378711461 11775627 657923..659059 1 NC_016902.1 PFAM: methyltransferase small; KEGG: eoh:ECO103_3829 putative methyltransferase small domain; methyltransferase small 659059 11775627 EKO11_0635 Escherichia coli KO11FL methyltransferase small YP_005276354.1 657923 D 595495 CDS YP_005276355.1 378711462 11775629 659330..659746 1 NC_016902.1 KEGG: eoh:ECO103_3827 putative DNA-binding transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; transcriptional regulator, XRE family 659746 11775629 EKO11_0637 Escherichia coli KO11FL transcriptional regulator, XRE family YP_005276355.1 659330 D 595495 CDS YP_005276356.1 378711463 11775630 complement(659791..661809) 1 NC_016902.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eoh:ECO103_3826 2,4-dienoyl-CoA reductase, NADH and FMN-linked; NADH:flavin oxidoreductase 661809 11775630 EKO11_0638 Escherichia coli KO11FL NADH:flavin oxidoreductase YP_005276356.1 659791 R 595495 CDS YP_005276357.1 378711464 11775631 complement(662135..664486) 1 NC_016902.1 PFAM: alpha-L-rhamnosidase; KEGG: eoh:ECO103_3825 putative glycosyl hydrolase; alpha-L-rhamnosidase 664486 11775631 EKO11_0639 Escherichia coli KO11FL alpha-L-rhamnosidase YP_005276357.1 662135 R 595495 CDS YP_005276358.1 378711465 11775632 complement(664503..665573) 1 NC_016902.1 KEGG: ebd:ECBD_0663 hypothetical protein; hypothetical protein 665573 11775632 EKO11_0640 Escherichia coli KO11FL hypothetical protein YP_005276358.1 664503 R 595495 CDS YP_005276359.1 378711466 11775633 complement(665707..667140) 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: sbo:SBO_2937 putative oxidoreductase; amino acid permease 667140 11775633 EKO11_0641 Escherichia coli KO11FL amino acid permease YP_005276359.1 665707 R 595495 CDS YP_005276360.1 378711467 11775634 complement(667203..667652) 1 NC_016902.1 PFAM: Conserved hypothetical protein CHP00022; KEGG: ssn:SSON_3216 cryptic beta-D-galactosidase subunit beta; hypothetical protein 667652 11775634 EKO11_0642 Escherichia coli KO11FL hypothetical protein YP_005276360.1 667203 R 595495 CDS YP_005276361.1 378711468 11775635 complement(667649..670741) 1 NC_016902.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 42 domain 5 loop region; KEGG: eoh:ECO103_3821 cryptic beta-D-galactosidase subunit alpha; glycoside hydrolase family protein 670741 11775635 EKO11_0643 Escherichia coli KO11FL glycoside hydrolase family protein YP_005276361.1 667649 R 595495 CDS YP_005276362.1 378711469 11775636 complement(670925..671908) 1 NC_016902.1 KEGG: ebd:ECBD_0667 DNA-binding transcriptional repressor EbgR; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator 671908 11775636 EKO11_0644 Escherichia coli KO11FL LacI family transcriptional regulator YP_005276362.1 670925 R 595495 CDS YP_005276363.1 378711470 11775637 672127..672459 1 NC_016902.1 PFAM: t-RNA-binding domain-containing protein; KEGG: sbo:SBO_2933 hypothetical protein; t-RNA-binding domain-containing protein 672459 11775637 EKO11_0645 Escherichia coli KO11FL t-RNA-binding domain-containing protein YP_005276363.1 672127 D 595495 CDS YP_005276364.1 378711471 11775638 complement(672501..673991) 1 NC_016902.1 TIGRFAM: putrescine aminotransferase; KEGG: cko:CKO_04486 putrescine--2-oxoglutarate aminotransferase; PFAM: aminotransferase class-III; putrescine aminotransferase 673991 11775638 EKO11_0646 Escherichia coli KO11FL putrescine aminotransferase YP_005276364.1 672501 R 595495 CDS YP_005276365.1 378711472 11775639 674298..675818 1 NC_016902.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; KEGG: ssn:SSON_3210 aerotaxis sensor receptor, flavoprotein; SMART: chemotaxis sensory transducer; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 675818 11775639 EKO11_0647 Escherichia coli KO11FL methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_005276365.1 674298 D 595495 CDS YP_005276366.1 378711473 11779330 complement(675972..676595) 1 NC_016902.1 PFAM: transcriptional regulator PadR family protein; KEGG: eoh:ECO103_3816 putative transcriptional regulator; PadR like family transcriptional regulator 676595 11779330 EKO11_0648 Escherichia coli KO11FL PadR like family transcriptional regulator YP_005276366.1 675972 R 595495 CDS YP_005276367.1 378711474 11779331 676872..677636 1 NC_016902.1 PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: sbc:SbBS512_E3506 siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain-containing protein 677636 11779331 EKO11_0649 Escherichia coli KO11FL FAD-binding 9 siderophore-interacting domain-containing protein YP_005276367.1 676872 D 595495 CDS YP_005276368.1 378711475 11779332 677890..678396 1 NC_016902.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: sbc:SbBS512_E3504 G/U mismatch-specific DNA glycosylase; uracil-DNA glycosylase 678396 11779332 EKO11_0650 Escherichia coli KO11FL uracil-DNA glycosylase YP_005276368.1 677890 D 595495 CDS YP_005276369.1 378711476 11775641 complement(678474..680315) 1 NC_016902.1 KEGG: sbo:SBO_2925 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 1.1 domain protein; sigma-70 region 1.2; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; RNA polymerase sigma-70 subunit RpoD 680315 11775641 EKO11_0651 Escherichia coli KO11FL RNA polymerase sigma-70 subunit RpoD YP_005276369.1 678474 R 595495 CDS YP_005276370.1 378711477 11775642 complement(680510..682255) 1 NC_016902.1 TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; DNA primase, DnaB-helicase binding domain; DNA primase DnaG DnaB-binding; KEGG: ssn:SSON_3203 DNA primase; SMART: DNA primase DnaG DnaB-binding; Toprim sub domain-containing protein; DNA primase 682255 11775642 EKO11_0652 Escherichia coli KO11FL DNA primase YP_005276370.1 680510 R 595495 CDS YP_005276371.1 378711478 11775643 complement(682366..682581) 1 NC_016902.1 KEGG: pam:PANA_3388 RpsU; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; 30S ribosomal protein S21 682581 11775643 EKO11_0653 Escherichia coli KO11FL 30S ribosomal protein S21 YP_005276371.1 682366 R 595495 CDS YP_005276372.1 378711479 11779333 682818..683831 1 NC_016902.1 TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: sbc:SbBS512_E3498 putative DNA-binding/iron metalloprotein/AP endonuclease; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 683831 11779333 EKO11_0654 Escherichia coli KO11FL glycoprotease family metalloendopeptidase YP_005276372.1 682818 D 595495 CDS YP_005276373.1 378711480 11775644 complement(683874..685337) 1 NC_016902.1 KEGG: eoh:ECO103_3743 putative tartrate:succinate antiporter; TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; anion transporter 685337 11775644 EKO11_0655 Escherichia coli KO11FL anion transporter YP_005276373.1 683874 R 595495 CDS YP_005276374.1 378711481 11775645 complement(685386..685991) 1 NC_016902.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; KEGG: sfv:SFV_3102 L(+)-tartrate dehydratase subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 685991 11775645 EKO11_0656 Escherichia coli KO11FL Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta YP_005276374.1 685386 R 595495 CDS YP_005276375.1 378711482 11775646 complement(685988..686899) 1 NC_016902.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; KEGG: sbo:SBO_2919 tartrate dehydratase subunit alpha; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 686899 11775646 EKO11_0657 Escherichia coli KO11FL Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha YP_005276375.1 685988 R 595495 CDS YP_005276376.1 378711483 11775647 687106..688038 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ebd:ECBD_0681 transcriptional activator TtdR; LysR family transcriptional regulator 688038 11775647 EKO11_0658 Escherichia coli KO11FL LysR family transcriptional regulator YP_005276376.1 687106 D 595495 CDS YP_005276377.1 378711484 11775648 complement(688051..688668) 1 NC_016902.1 PFAM: protein of unknown function DUF205; KEGG: sdy:SDY_3242 putative glycerol-3-phosphate acyltransferase PlsY; hypothetical protein 688668 11775648 EKO11_0659 Escherichia coli KO11FL hypothetical protein YP_005276377.1 688051 R 595495 CDS YP_005276378.1 378711485 11775649 688773..689141 1 NC_016902.1 TIGRFAM: dihydroneopterin aldolase; KEGG: sdy:SDY_3241 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; PFAM: dihydroneopterin aldolase; dihydroneopterin aldolase 689141 11775649 EKO11_0660 Escherichia coli KO11FL dihydroneopterin aldolase YP_005276378.1 688773 D 595495 CDS YP_005276379.1 378711486 11775650 689231..690052 1 NC_016902.1 KEGG: sbc:SbBS512_E3488 undecaprenyl pyrophosphate phosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase 690052 11775650 EKO11_0661 Escherichia coli KO11FL undecaprenol kinase YP_005276379.1 689231 D 595495 CDS YP_005276380.1 378711487 11775651 complement(690215..691453) 1 NC_016902.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: sbc:SbBS512_E3487 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 691453 11775651 EKO11_0662 Escherichia coli KO11FL polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_005276380.1 690215 R 595495 CDS YP_005276381.1 378711488 11775652 complement(691517..692137) 1 NC_016902.1 SMART: SH3 domain protein; KEGG: eoh:ECO103_3735 putative signal transduction protein; SH3 domain-containing protein 692137 11775652 EKO11_0663 Escherichia coli KO11FL SH3 domain-containing protein YP_005276381.1 691517 R 595495 CDS YP_005276382.1 378711489 11779334 692379..693680 1 NC_016902.1 PFAM: adenylate cyclase; CHAD domain containing protein; KEGG: eoi:ECO111_3877 putative adenylate cyclase; adenylate cyclase 693680 11779334 EKO11_0664 Escherichia coli KO11FL adenylate cyclase YP_005276382.1 692379 D 595495 CDS YP_005276383.1 378711490 11775653 693703..696543 1 NC_016902.1 KEGG: eoi:ECO111_3876 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 696543 11775653 EKO11_0665 Escherichia coli KO11FL (glutamate--ammonia-ligase) adenylyltransferase YP_005276383.1 693703 D 595495 CDS YP_005276384.1 378711491 11775654 696591..698024 1 NC_016902.1 KEGG: ebd:ECBD_0689 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase; rfaE bifunctional protein 698024 11775654 EKO11_0666 Escherichia coli KO11FL rfaE bifunctional protein YP_005276384.1 696591 D 595495 CDS YP_005276385.1 378711492 11775655 complement(698091..698483) 1 NC_016902.1 manually curated; KEGG: eok:G2583_3774 hypothetical protein; hypothetical protein 698483 11775655 EKO11_0667 Escherichia coli KO11FL hypothetical protein YP_005276385.1 698091 R 595495 CDS YP_005276386.1 378711493 11779335 complement(698818..700479) 1 NC_016902.1 KEGG: ssn:SSON_3188 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein; hypothetical protein 700479 11779335 EKO11_0669 Escherichia coli KO11FL hypothetical protein YP_005276386.1 698818 R 595495 CDS YP_005276387.1 378711494 11775657 complement(700506..701135) 1 NC_016902.1 PFAM: protein of unknown function DUF1449; KEGG: eoh:ECO103_3727 putative inner membrane protein; hypothetical protein 701135 11775657 EKO11_0670 Escherichia coli KO11FL hypothetical protein YP_005276387.1 700506 R 595495 CDS YP_005276388.1 378711495 11775658 701404..701604 1 NC_016902.1 PFAM: Glycogen synthesis protein; KEGG: ssn:SSON_3186 glycogen synthesis protein GlgS; Glycogen synthesis protein 701604 11775658 EKO11_0671 Escherichia coli KO11FL Glycogen synthesis protein YP_005276388.1 701404 D 595495 CDS YP_005276389.1 378711496 11775659 complement(701647..702711) 1 NC_016902.1 KEGG: ssn:SSON_3184 hypothetical protein; hypothetical protein 702711 11775659 EKO11_0672 Escherichia coli KO11FL hypothetical protein YP_005276389.1 701647 R 595495 CDS YP_005276390.1 378711497 11775660 complement(702713..703462) 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: ssn:SSON_3183 hypothetical protein; Pili assembly chaperone, N-terminal protein 703462 11775660 EKO11_0673 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005276390.1 702713 R 595495 CDS YP_005276391.1 378711498 11775661 complement(703478..705982) 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoh:ECO103_3723 putative outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 705982 11775661 EKO11_0674 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005276391.1 703478 R 595495 CDS YP_005276392.1 378711499 11775662 complement(706042..706593) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eoh:ECO103_3722 putative fimbrial protein; fimbrial protein domain-containing protein 706593 11775662 EKO11_0675 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005276392.1 706042 R 595495 CDS YP_005276393.1 378711500 11775663 complement(706876..707166) 1 NC_016902.1 PFAM: protein of unknown function DUF526; KEGG: sbc:SbBS512_E3479 hypothetical protein; hypothetical protein 707166 11775663 EKO11_0676 Escherichia coli KO11FL hypothetical protein YP_005276393.1 706876 R 595495 CDS YP_005276394.1 378711501 11775664 707540..708193 1 NC_016902.1 KEGG: sdy:SDY_3226 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 708193 11775664 EKO11_0677 Escherichia coli KO11FL 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_005276394.1 707540 D 595495 CDS YP_005276395.1 378711502 11775665 708455..708625 1 NC_016902.1 KEGG: sbc:SbBS512_E3475 hypothetical protein; hypothetical protein 708625 11775665 EKO11_0678 Escherichia coli KO11FL hypothetical protein YP_005276395.1 708455 D 595495 CDS YP_005276396.1 378711503 11775666 complement(708683..709456) 1 NC_016902.1 PFAM: zinc/iron permease; KEGG: ssn:SSON_3177 zinc transporter ZupT; zinc/iron permease 709456 11775666 EKO11_0679 Escherichia coli KO11FL zinc/iron permease YP_005276396.1 708683 R 595495 CDS YP_005276397.1 378711504 11775667 709572..710387 1 NC_016902.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: eoh:ECO103_3717 hypothetical protein; extradiol ring-cleavage dioxygenase class III protein subunit B 710387 11775667 EKO11_0680 Escherichia coli KO11FL extradiol ring-cleavage dioxygenase class III protein subunit B YP_005276397.1 709572 D 595495 CDS YP_005276398.1 378711505 11775668 complement(710425..711585) 1 NC_016902.1 KEGG: sbc:SbBS512_E3470 glutathionylspermidine synthase family protein; PFAM: glutathionylspermidine synthase; Trypanothione synthase 711585 11775668 EKO11_0681 Escherichia coli KO11FL Trypanothione synthase YP_005276398.1 710425 R 595495 CDS YP_005276399.1 378711506 11775669 complement(711591..712262) 1 NC_016902.1 PFAM: protein of unknown function DUF1190; KEGG: ssn:SSON_3174 hypothetical protein; hypothetical protein 712262 11775669 EKO11_0682 Escherichia coli KO11FL hypothetical protein YP_005276399.1 711591 R 595495 CDS YP_005276400.1 378711507 11775670 complement(712410..713891) 1 NC_016902.1 KEGG: ssn:SSON_3173 outer membrane channel protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 713891 11775670 EKO11_0683 Escherichia coli KO11FL TolC family type I secretion outer membrane protein YP_005276400.1 712410 R 595495 CDS YP_005276401.1 378711508 11775671 714096..714725 1 NC_016902.1 KEGG: sdy:SDY_3206 ADP-ribose pyrophosphatase NudF; PFAM: NUDIX hydrolase; ADP-ribose diphosphatase 714725 11775671 EKO11_0684 Escherichia coli KO11FL ADP-ribose diphosphatase YP_005276401.1 714096 D 595495 CDS YP_005276402.1 378711509 11775672 714726..715148 1 NC_016902.1 PFAM: protein of unknown function DUF1249; KEGG: sbc:SbBS512_E3466 hypothetical protein; hypothetical protein 715148 11775672 EKO11_0685 Escherichia coli KO11FL hypothetical protein YP_005276402.1 714726 D 595495 CDS YP_005276403.1 378711510 11775673 715173..716000 1 NC_016902.1 PFAM: Calcineurin phosphoesterase domain protein; metallophosphoesterase; KEGG: sdy:SDY_3208 cyclic 3',5'-adenosine monophosphate phosphodiesterase; calcineurin phosphoesterase 716000 11775673 EKO11_0686 Escherichia coli KO11FL calcineurin phosphoesterase YP_005276403.1 715173 D 595495 CDS YP_005276404.1 378711511 11779336 716000..716581 1 NC_016902.1 PFAM: protein of unknown function UPF0227; KEGG: sdy:SDY_3209 esterase YqiA; hypothetical protein 716581 11779336 EKO11_0687 Escherichia coli KO11FL hypothetical protein YP_005276404.1 716000 D 595495 CDS YP_005276405.1 378711512 11779337 716610..718502 1 NC_016902.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA topoisomerase IV, B subunit; KEGG: sbo:SBO_2888 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein; DNA topoisomerase IV subunit B 718502 11779337 EKO11_0688 Escherichia coli KO11FL DNA topoisomerase IV subunit B YP_005276405.1 716610 D 595495 CDS YP_005276406.1 378711513 11775674 complement(718550..718864) 1 NC_016902.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sbc:SbBS512_E3462 quinol monooxygenase YgiN; antibiotic biosynthesis monooxygenase 718864 11775674 EKO11_0689 Escherichia coli KO11FL antibiotic biosynthesis monooxygenase YP_005276406.1 718550 R 595495 CDS YP_005276407.1 378711514 11775675 complement(718895..719476) 1 NC_016902.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sbc:SbBS512_E3461 modulator of drug activity B; NAD(P)H dehydrogenase (quinone) 719476 11775675 EKO11_0690 Escherichia coli KO11FL NAD(P)H dehydrogenase (quinone) YP_005276407.1 718895 R 595495 CDS YP_005276408.1 378711515 11775676 719794..720126 1 NC_016902.1 manually curated; KEGG: eoh:ECO103_3705 hypothetical protein; hypothetical protein 720126 11775676 EKO11_0691 Escherichia coli KO11FL hypothetical protein YP_005276408.1 719794 D 595495 CDS YP_005276409.1 378711516 11775677 complement(720172..721521) 1 NC_016902.1 KEGG: eoh:ECO103_3704 sensor protein QseC; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 721521 11775677 EKO11_0692 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005276409.1 720172 R 595495 CDS YP_005276410.1 378711517 11779338 complement(721518..722177) 1 NC_016902.1 KEGG: eok:G2583_3746 DNA-binding response regulator in two-component regulatory system with QseC; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 722177 11779338 EKO11_0693 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005276410.1 721518 R 595495 CDS YP_005276411.1 378711518 11775678 722329..722721 1 NC_016902.1 PFAM: protein of unknown function DUF388, OB-fold; KEGG: sdy:SDY_3215 hypothetical protein; hypothetical protein 722721 11775678 EKO11_0694 Escherichia coli KO11FL hypothetical protein YP_005276411.1 722329 D 595495 CDS YP_005276412.1 378711519 11775679 722774..723256 1 NC_016902.1 PFAM: transcription activator effector binding; KEGG: ssn:SSON_3162 hypothetical protein; transcription activator effector binding protein 723256 11775679 EKO11_0695 Escherichia coli KO11FL transcription activator effector binding protein YP_005276412.1 722774 D 595495 CDS YP_005276413.1 378711520 11775681 723802..726060 1 NC_016902.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, A subunit; KEGG: sfv:SFV_3068 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA topoisomerase IV subunit A 726060 11775681 EKO11_0697 Escherichia coli KO11FL DNA topoisomerase IV subunit A YP_005276413.1 723802 D 595495 CDS YP_005276414.1 378711521 11775682 726293..727030 1 NC_016902.1 SMART: phospholipid/glycerol acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; KEGG: sbc:SbBS512_E3455 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 727030 11775682 EKO11_0698 Escherichia coli KO11FL 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_005276414.1 726293 D 595495 CDS YP_005276415.1 378711522 11775683 727105..728517 1 NC_016902.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: sbc:SbBS512_E3454 repressor protein for FtsI; multicopper oxidase type 3 728517 11775683 EKO11_0699 Escherichia coli KO11FL multicopper oxidase type 3 YP_005276415.1 727105 D 595495 CDS YP_005276416.1 378711523 11775684 728628..730847 1 NC_016902.1 KEGG: eoh:ECO103_3697 hypothetical protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 730847 11775684 EKO11_0700 Escherichia coli KO11FL radical SAM protein YP_005276416.1 728628 D 595495 CDS YP_005276417.1 378711524 11775685 complement(730890..731147) 1 NC_016902.1 KEGG: sbc:SbBS512_E3443 putative outer membrane lipoprotein; putative outer membrane lipoprotein 731147 11775685 EKO11_0701 Escherichia coli KO11FL putative outer membrane lipoprotein YP_005276417.1 730890 R 595495 CDS YP_005276418.1 378711525 11775686 complement(731198..732124) 1 NC_016902.1 KEGG: eoi:ECO111_3840 hypothetical protein; hypothetical protein 732124 11775686 EKO11_0702 Escherichia coli KO11FL hypothetical protein YP_005276418.1 731198 R 595495 CDS YP_005276419.1 378711526 11775687 complement(732324..733151) 1 NC_016902.1 KEGG: ebd:ECBD_0728 2,5-diketo-D-gluconate reductase A; PFAM: aldo/keto reductase; 2,5-didehydrogluconate reductase 733151 11775687 EKO11_0703 Escherichia coli KO11FL 2,5-didehydrogluconate reductase YP_005276419.1 732324 R 595495 CDS YP_005276420.1 378711527 11775688 complement(733256..734419) 1 NC_016902.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sfv:SFV_3060 putative oxidoreductase; iron-containing alcohol dehydrogenase 734419 11775688 EKO11_0704 Escherichia coli KO11FL iron-containing alcohol dehydrogenase YP_005276420.1 733256 R 595495 CDS YP_005276421.1 378711528 11775689 734556..735512 1 NC_016902.1 KEGG: eoi:ECO111_3837 putative DNA-binding transcriptional regulator, AraC-type; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 735512 11775689 EKO11_0705 Escherichia coli KO11FL AraC family transcriptional regulator YP_005276421.1 734556 D 595495 CDS YP_005276422.1 378711529 11775690 complement(735552..736211) 1 NC_016902.1 PFAM: SNARE associated Golgi protein; KEGG: ssn:SSON_3152 hypothetical protein; hypothetical protein 736211 11775690 EKO11_0706 Escherichia coli KO11FL hypothetical protein YP_005276422.1 735552 R 595495 CDS YP_005276423.1 378711530 11779339 complement(736351..737538) 1 NC_016902.1 KEGG: eoh:ECO103_3690 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; cystathionine beta-lyase 737538 11779339 EKO11_0707 Escherichia coli KO11FL cystathionine beta-lyase YP_005276423.1 736351 R 595495 CDS YP_005276424.1 378711531 11775691 737789..738523 1 NC_016902.1 KEGG: sdy:SDY_3067 biopolymer transport protein ExbB; TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; tonB-system energizer ExbB 738523 11775691 EKO11_0709 Escherichia coli KO11FL tonB-system energizer ExbB YP_005276424.1 737789 D 595495 CDS YP_005276425.1 378711532 11775692 738530..738955 1 NC_016902.1 KEGG: sbc:SbBS512_E3433 biopolymer transport protein ExbD; TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; TonB system transport protein ExbD 738955 11775692 EKO11_0710 Escherichia coli KO11FL TonB system transport protein ExbD YP_005276425.1 738530 D 595495 CDS YP_005276426.1 378711533 11775693 complement(739227..740111) 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbc:SbBS512_E3432 oxidoreductase; short-chain dehydrogenase/reductase SDR 740111 11775693 EKO11_0711 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005276426.1 739227 R 595495 CDS YP_005276427.1 378711534 11775694 740302..740796 1 NC_016902.1 PFAM: Uncharacterised protein family UPF0114; KEGG: sbc:SbBS512_E3431 hypothetical protein; hypothetical protein 740796 11775694 EKO11_0712 Escherichia coli KO11FL hypothetical protein YP_005276427.1 740302 D 595495 CDS YP_005276428.1 378711535 11775695 complement(740836..741876) 1 NC_016902.1 PFAM: aldo/keto reductase; KEGG: eoh:ECO103_3685 aldo-keto reductase; aldo/keto reductase 741876 11775695 EKO11_0713 Escherichia coli KO11FL aldo/keto reductase YP_005276428.1 740836 R 595495 CDS YP_005276429.1 378711536 11775696 742033..742920 1 NC_016902.1 KEGG: eoh:ECO103_3684 putative hydrolase; Carboxymethylenebutenolidase 742920 11775696 EKO11_0714 Escherichia coli KO11FL Carboxymethylenebutenolidase YP_005276429.1 742033 D 595495 CDS YP_005276430.1 378711537 11775697 743039..743326 1 NC_016902.1 KEGG: sdy:SDY_3075 hypothetical protein; hypothetical protein 743326 11775697 EKO11_0715 Escherichia coli KO11FL hypothetical protein YP_005276430.1 743039 D 595495 CDS YP_005276431.1 378711538 11775698 743515..744633 1 NC_016902.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: sbc:SbBS512_E3424 hydrogenase 2 small subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 744633 11775698 EKO11_0716 Escherichia coli KO11FL hydrogenase (NiFe) small subunit HydA YP_005276431.1 743515 D 595495 CDS YP_005276432.1 378711539 11775699 744636..745622 1 NC_016902.1 KEGG: sbo:SBO_2867 hydrogenase 2 protein HybA; hydrogenase 2 protein HybA 745622 11775699 EKO11_0717 Escherichia coli KO11FL hydrogenase 2 protein HybA YP_005276432.1 744636 D 595495 CDS YP_005276433.1 378711540 11775700 745612..746790 1 NC_016902.1 PFAM: Polysulphide reductase NrfD; KEGG: sdy:SDY_3078 putative hydrogenase 2 b cytochrome subunit; polysulfide reductase NrfD 746790 11775700 EKO11_0718 Escherichia coli KO11FL polysulfide reductase NrfD YP_005276433.1 745612 D 595495 CDS YP_005276434.1 378711541 11775701 746787..748490 1 NC_016902.1 KEGG: sbc:SbBS512_E3421 hydrogenase 2 large subunit; PFAM: nickel-dependent hydrogenase large subunit; cytochrome-c3 hydrogenase 748490 11775701 EKO11_0719 Escherichia coli KO11FL cytochrome-c3 hydrogenase YP_005276434.1 746787 D 595495 CDS YP_005276435.1 378711542 11779341 748490..748984 1 NC_016902.1 KEGG: eok:G2583_3719 putative maturation element for hydrogenase 2; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; hydrogenase expression/formation protein 748984 11779341 EKO11_0720 Escherichia coli KO11FL hydrogenase expression/formation protein YP_005276435.1 748490 D 595495 CDS YP_005276436.1 378711543 11775702 748977..749465 1 NC_016902.1 KEGG: sbc:SbBS512_E3419 hydrogenase 2-specific chaperone; hydrogenase 2-specific chaperone 749465 11775702 EKO11_0721 Escherichia coli KO11FL hydrogenase 2-specific chaperone YP_005276436.1 748977 D 595495 CDS YP_005276437.1 378711544 11775703 749458..749799 1 NC_016902.1 KEGG: sbc:SbBS512_E3418 hydrogenase nickel incorporation protein HybF; TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; hydrogenase nickel incorporation protein HypA 749799 11775703 EKO11_0722 Escherichia coli KO11FL hydrogenase nickel incorporation protein HypA YP_005276437.1 749458 D 595495 CDS YP_005276438.1 378711545 11775704 749812..750060 1 NC_016902.1 KEGG: sdy:SDY_3083 hydrogenase 2 accessory protein HypG; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase assembly chaperone HypC/HupF 750060 11775704 EKO11_0723 Escherichia coli KO11FL hydrogenase assembly chaperone HypC/HupF YP_005276438.1 749812 D 595495 CDS YP_005276439.1 378711546 11775705 complement(750183..751049) 1 NC_016902.1 PFAM: Glutathione S-transferase domain; KEGG: eoh:ECO103_3673 putative glutathione S-transferase YghU; glutathione S-transferase 751049 11775705 EKO11_0724 Escherichia coli KO11FL glutathione S-transferase YP_005276439.1 750183 R 595495 CDS YP_005276440.1 378711547 11779342 751254..753113 1 NC_016902.1 KEGG: sdy:SDY_3085 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; PFAM: CHAP domain containing protein; glutathionylspermidine synthase; glutathionylspermidine synthase 753113 11779342 EKO11_0725 Escherichia coli KO11FL glutathionylspermidine synthase YP_005276440.1 751254 D 595495 CDS YP_005276441.1 378711548 11775706 753405..754904 1 NC_016902.1 PFAM: phosphate transporter; KEGG: sdy:SDY_3086 low-affinity phosphate transport; phosphate transporter 754904 11775706 EKO11_0726 Escherichia coli KO11FL phosphate transporter YP_005276441.1 753405 D 595495 CDS YP_005276442.1 378711549 11775707 complement(754958..755650) 1 NC_016902.1 KEGG: ebd:ECBD_0752 hypothetical protein; hypothetical protein 755650 11775707 EKO11_0727 Escherichia coli KO11FL hypothetical protein YP_005276442.1 754958 R 595495 CDS YP_005276443.1 378711550 11775708 755839..756537 1 NC_016902.1 KEGG: ebd:ECBD_0753 uncharacterized ATP-binding protein YghS; ATP-binding protein 756537 11775708 EKO11_0728 Escherichia coli KO11FL ATP-binding protein YP_005276443.1 755839 D 595495 CDS YP_005276444.1 378711551 11775709 756569..757327 1 NC_016902.1 KEGG: ebd:ECBD_0754 hypothetical protein; hypothetical protein 757327 11775709 EKO11_0729 Escherichia coli KO11FL hypothetical protein YP_005276444.1 756569 D 595495 CDS YP_005276445.1 378711552 11775710 757373..758722 1 NC_016902.1 PFAM: polysaccharide biosynthesis protein; KEGG: eoi:ECO111_3812 putative inner membrane protein; polysaccharide biosynthesis protein 758722 11775710 EKO11_0730 Escherichia coli KO11FL polysaccharide biosynthesis protein YP_005276445.1 757373 D 595495 CDS YP_005276446.1 378711553 11775711 758722..759546 1 NC_016902.1 KEGG: eoi:ECO111_3811 hypothetical protein; hypothetical protein 759546 11775711 EKO11_0731 Escherichia coli KO11FL hypothetical protein YP_005276446.1 758722 D 595495 CDS YP_005276447.1 378711554 11775712 759558..760118 1 NC_016902.1 PFAM: Conserved hypothetical protein, YtfJ; KEGG: sfx:S3229 hypothetical protein; hypothetical protein 760118 11775712 EKO11_0732 Escherichia coli KO11FL hypothetical protein YP_005276447.1 759558 D 595495 CDS YP_005276448.1 378711555 11775713 760149..761219 1 NC_016902.1 PFAM: permease YjgP/YjgQ family protein; KEGG: eok:G2583_3706 permease YjgP/YjgQ family protein precursor; YjgP/YjgQ family permease 761219 11775713 EKO11_0733 Escherichia coli KO11FL YjgP/YjgQ family permease YP_005276448.1 760149 D 595495 CDS YP_005276449.1 378711556 11775714 761216..762295 1 NC_016902.1 PFAM: permease YjgP/YjgQ family protein; KEGG: eoh:ECO103_3663 hypothetical protein; YjgP/YjgQ family permease 762295 11775714 EKO11_0734 Escherichia coli KO11FL YjgP/YjgQ family permease YP_005276449.1 761216 D 595495 CDS YP_005276450.1 378711557 11775715 complement(762330..763502) 1 NC_016902.1 KEGG: eoh:ECO103_3662 hypothetical protein; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase 763502 11775715 EKO11_0735 Escherichia coli KO11FL 8-amino-7-oxononanoate synthase YP_005276450.1 762330 R 595495 CDS YP_005276451.1 378711558 11775716 complement(763502..763750) 1 NC_016902.1 PFAM: phosphopantetheine-binding; KEGG: sfx:S3224 hypothetical protein; phosphopantetheine-binding protein 763750 11775716 EKO11_0736 Escherichia coli KO11FL phosphopantetheine-binding protein YP_005276451.1 763502 R 595495 CDS YP_005276452.1 378711559 11779343 complement(763782..764696) 1 NC_016902.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: eoi:ECO111_3805 hypothetical protein; NAD-dependent epimerase/dehydratase 764696 11779343 EKO11_0737 Escherichia coli KO11FL NAD-dependent epimerase/dehydratase YP_005276452.1 763782 R 595495 CDS YP_005276453.1 378711560 11775717 complement(764693..766414) 1 NC_016902.1 PFAM: AMP-dependent synthetase and ligase; KEGG: eoh:ECO103_3659 acyl-CoA synthetase; AMP-dependent synthetase and ligase 766414 11775717 EKO11_0738 Escherichia coli KO11FL AMP-dependent synthetase and ligase YP_005276453.1 764693 R 595495 CDS YP_005276454.1 378711561 11775718 766785..767927 1 NC_016902.1 KEGG: eoi:ECO111_3803 putative DNA-binding transcriptional regulator; putative DNA-binding transcriptional regulator 767927 11775718 EKO11_0739 Escherichia coli KO11FL putative DNA-binding transcriptional regulator YP_005276454.1 766785 D 595495 CDS YP_005276455.1 378711562 11775719 complement(767934..768698) 1 NC_016902.1 KEGG: ebd:ECBD_0758 DNA-binding transcriptional regulator GlcC; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 768698 11775719 EKO11_0740 Escherichia coli KO11FL GntR family transcriptional regulator YP_005276455.1 767934 R 595495 CDS YP_005276456.1 378711563 11775720 768949..770448 1 NC_016902.1 KEGG: ebd:ECBD_0759 glycolate oxidase subunit GlcD; TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; glycolate oxidase subunit GlcD 770448 11775720 EKO11_0741 Escherichia coli KO11FL glycolate oxidase subunit GlcD YP_005276456.1 768949 D 595495 CDS YP_005276457.1 378711564 11775721 770448..771500 1 NC_016902.1 PFAM: FAD linked oxidase domain protein; KEGG: eoi:ECO111_3800 glycolate oxidase FAD binding subunit; FAD linked oxidase domain-containing protein 771500 11775721 EKO11_0742 Escherichia coli KO11FL FAD linked oxidase domain-containing protein YP_005276457.1 770448 D 595495 CDS YP_005276458.1 378711565 11779344 771511..772734 1 NC_016902.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: eoi:ECO111_3799 glycolate oxidase iron-sulfur subunit; hypothetical protein 772734 11779344 EKO11_0743 Escherichia coli KO11FL hypothetical protein YP_005276458.1 771511 D 595495 CDS YP_005276459.1 378711566 11775722 772739..773143 1 NC_016902.1 PFAM: protein of unknown function DUF336; KEGG: sfv:SFV_3032 hypothetical protein; hypothetical protein 773143 11775722 EKO11_0744 Escherichia coli KO11FL hypothetical protein YP_005276459.1 772739 D 595495 CDS YP_005276460.1 378711567 11775723 773165..775336 1 NC_016902.1 TIGRFAM: malate synthase G; KEGG: ebd:ECBD_0763 malate synthase G; PFAM: Malate synthase family protein; malate synthase G 775336 11775723 EKO11_0745 Escherichia coli KO11FL malate synthase G YP_005276460.1 773165 D 595495 CDS YP_005276461.1 378711568 11775724 775692..777374 1 NC_016902.1 KEGG: eoh:ECO103_3651 glycolate transporter; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 777374 11775724 EKO11_0746 Escherichia coli KO11FL L-lactate transport YP_005276461.1 775692 D 595495 CDS YP_005276462.1 378711569 11779345 777860..782422 1 NC_016902.1 KEGG: eoi:ECO111_3795 putative lipoprotein AcfD homolog precursor; putative lipoprotein AcfD precursor 782422 11779345 EKO11_0748 Escherichia coli KO11FL putative lipoprotein AcfD precursor YP_005276462.1 777860 D 595495 CDS YP_005276463.1 378711570 11775726 782570..783379 1 NC_016902.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: eoi:ECO111_3794 bifunctional prepilin leader peptidase/methylase; peptidase A24A domain-containing protein 783379 11775726 EKO11_0749 Escherichia coli KO11FL peptidase A24A domain-containing protein YP_005276463.1 782570 D 595495 CDS YP_005276464.1 378711571 11775727 783445..783855 1 NC_016902.1 KEGG: ebd:ECBD_0767 uncharacterized lipoprotein YghG; lipoprotein YghG 783855 11775727 EKO11_0750 Escherichia coli KO11FL lipoprotein YghG YP_005276464.1 783445 D 595495 CDS YP_005276465.1 378711572 11775728 783873..784832 1 NC_016902.1 KEGG: eok:G2583_3687 general secretion pathway protein C; manually curated; TIGRFAM: general secretion pathway protein C; general secretion pathway protein C 784832 11775728 EKO11_0751 Escherichia coli KO11FL general secretion pathway protein C YP_005276465.1 783873 D 595495 CDS YP_005276466.1 378711573 11775729 784862..786922 1 NC_016902.1 KEGG: eoi:ECO111_3791 putative type II secretion protein GspD; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein D 786922 11775729 EKO11_0752 Escherichia coli KO11FL general secretion pathway protein D YP_005276466.1 784862 D 595495 CDS YP_005276467.1 378711574 11775730 786922..788415 1 NC_016902.1 TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; KEGG: eoi:ECO111_3790 putative type II secretion protein GspE; SMART: AAA ATPase; general secretory pathway protein E 788415 11775730 EKO11_0753 Escherichia coli KO11FL general secretory pathway protein E YP_005276467.1 786922 D 595495 CDS YP_005276468.1 378711575 11775731 788415..789638 1 NC_016902.1 KEGG: eoi:ECO111_3789 putative type II secretion protein GspF; TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain; general secretion pathway protein F 789638 11775731 EKO11_0754 Escherichia coli KO11FL general secretion pathway protein F YP_005276468.1 788415 D 595495 CDS YP_005276469.1 378711576 11775732 789655..790110 1 NC_016902.1 KEGG: ebr:ECB_02835 hypothetical type II secretion protein GspG; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein G 790110 11775732 EKO11_0755 Escherichia coli KO11FL general secretion pathway protein G YP_005276469.1 789655 D 595495 CDS YP_005276470.1 378711577 11775733 790114..790677 1 NC_016902.1 TIGRFAM: general secretion pathway protein H; KEGG: eok:G2583_3682 general secretion pathway protein H; general secretion pathway protein H 790677 11775733 EKO11_0756 Escherichia coli KO11FL general secretion pathway protein H YP_005276470.1 790114 D 595495 CDS YP_005276471.1 378711578 11775734 790674..791045 1 NC_016902.1 KEGG: eoi:ECO111_3786 putative type II secretion protein GspI; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; general secretion pathway protein I 791045 11775734 EKO11_0757 Escherichia coli KO11FL general secretion pathway protein I YP_005276471.1 790674 D 595495 CDS YP_005276472.1 378711579 11775735 791042..791647 1 NC_016902.1 TIGRFAM: general secretion pathway protein J; KEGG: sbc:SbBS512_E3406 general secretion pathway protein GspJ; general secretion pathway protein J 791647 11775735 EKO11_0758 Escherichia coli KO11FL general secretion pathway protein J YP_005276472.1 791042 D 595495 CDS YP_005276473.1 378711580 11779346 791644..792621 1 NC_016902.1 KEGG: eoi:ECO111_3784 putative type II secretion protein GspK; putative type II secretion protein GspK 792621 11779346 EKO11_0759 Escherichia coli KO11FL putative type II secretion protein GspK YP_005276473.1 791644 D 595495 CDS YP_005276474.1 378711581 11775736 792618..793796 1 NC_016902.1 KEGG: sbc:SbBS512_E3404 GspL-like protein; TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; general secretion pathway protein L 793796 11775736 EKO11_0760 Escherichia coli KO11FL general secretion pathway protein L YP_005276474.1 792618 D 595495 CDS YP_005276475.1 378711582 11775737 793798..794334 1 NC_016902.1 PFAM: General secretion pathway M protein; KEGG: sbc:SbBS512_E3403 putative general secretion pathway protein YghD; general secretion pathway protein M 794334 11775737 EKO11_0761 Escherichia coli KO11FL general secretion pathway protein M YP_005276475.1 793798 D 595495 CDS YP_005276476.1 378711583 11775739 complement(794664..795371) 1 NC_016902.1 PFAM: protein of unknown function DUF554; KEGG: ebr:ECB_02796 predicted inner membrane protein; hypothetical protein 795371 11775739 EKO11_0762 Escherichia coli KO11FL hypothetical protein YP_005276476.1 794664 R 595495 CDS YP_005276477.1 378711584 11779347 795709..797904 1 NC_016902.1 manually curated; KEGG: eok:G2583_3624 ornithine decarboxylase isozyme; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; Ornithine decarboxylase 797904 11779347 EKO11_0763 Escherichia coli KO11FL Ornithine decarboxylase YP_005276477.1 795709 D 595495 CDS YP_005276478.1 378711585 11775740 complement(797954..799210) 1 NC_016902.1 TIGRFAM: nucleoside transporter; KEGG: sbc:SbBS512_E3397 nucleoside permease NupG; nucleoside transporter 799210 11775740 EKO11_0764 Escherichia coli KO11FL nucleoside transporter YP_005276478.1 797954 R 595495 CDS YP_005276479.1 378711586 11775741 complement(799412..800491) 1 NC_016902.1 PFAM: Lytic transglycosylase catalytic; KEGG: sbc:SbBS512_E3396 murein transglycosylase C; lytic transglycosylase 800491 11775741 EKO11_0765 Escherichia coli KO11FL lytic transglycosylase YP_005276479.1 799412 R 595495 CDS YP_005276480.1 378711587 11775742 complement(800556..800831) 1 NC_016902.1 PFAM: Fe(II) trafficking protein YggX; KEGG: sdy:SDY_3110 hypothetical protein; Fe(II) trafficking protein YggX 800831 11775742 EKO11_0766 Escherichia coli KO11FL Fe(II) trafficking protein YggX YP_005276480.1 800556 R 595495 CDS YP_005276481.1 378711588 11775743 complement(800859..801911) 1 NC_016902.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: eoh:ECO103_3544 adenine DNA glycosylase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; A/G-specific adenine glycosylase 801911 11775743 EKO11_0767 Escherichia coli KO11FL A/G-specific adenine glycosylase YP_005276481.1 800859 R 595495 CDS YP_005276482.1 378711589 11775744 802072..802791 1 NC_016902.1 KEGG: sbc:SbBS512_E3393 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 802791 11775744 EKO11_0768 Escherichia coli KO11FL tRNA (guanine-N(7)-)-methyltransferase YP_005276482.1 802072 D 595495 CDS YP_005276483.1 378711590 11779348 802791..803117 1 NC_016902.1 PFAM: protein of unknown function DUF469; KEGG: sdy:SDY_3113 hypothetical protein; hypothetical protein 803117 11779348 EKO11_0769 Escherichia coli KO11FL hypothetical protein YP_005276483.1 802791 D 595495 CDS YP_005276484.1 378711591 11775745 803301..804020 1 NC_016902.1 KEGG: sdy:SDY_3114 hypothetical protein; hypothetical protein 804020 11775745 EKO11_0770 Escherichia coli KO11FL hypothetical protein YP_005276484.1 803301 D 595495 CDS YP_005276485.1 378711592 11775746 804196..805242 1 NC_016902.1 KEGG: sbc:SbBS512_E3389 L-asparaginase II; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; type II L-asparaginase 805242 11775746 EKO11_0771 Escherichia coli KO11FL type II L-asparaginase YP_005276485.1 804196 D 595495 CDS YP_005276486.1 378711593 11775747 805359..806366 1 NC_016902.1 PFAM: protein of unknown function DUF1202; KEGG: sbc:SbBS512_E3388 hypothetical protein; hypothetical protein 806366 11775747 EKO11_0772 Escherichia coli KO11FL hypothetical protein YP_005276486.1 805359 D 595495 CDS YP_005276487.1 378711594 11775748 complement(806521..807657) 1 NC_016902.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; KEGG: eoh:ECO103_3535 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 807657 11775748 EKO11_0773 Escherichia coli KO11FL oxygen-independent coproporphyrinogen III oxidase YP_005276487.1 806521 R 595495 CDS YP_005276488.1 378711595 11775749 complement(807650..808243) 1 NC_016902.1 KEGG: eoi:ECO111_3702 putative deoxyribonucleotide triphosphate pyrophosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 808243 11775749 EKO11_0774 Escherichia coli KO11FL RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_005276488.1 807650 R 595495 CDS YP_005276489.1 378711596 11779349 complement(808251..808541) 1 NC_016902.1 PFAM: protein of unknown function DUF167; KEGG: sfv:SFV_3007 hypothetical protein; hypothetical protein 808541 11779349 EKO11_0775 Escherichia coli KO11FL hypothetical protein YP_005276489.1 808251 R 595495 CDS YP_005276490.1 378711597 11775750 complement(808538..809104) 1 NC_016902.1 PFAM: protein of unknown function YGGT; KEGG: sdy:SDY_3120 putative resistance protein; hypothetical protein 809104 11775750 EKO11_0776 Escherichia coli KO11FL hypothetical protein YP_005276490.1 808538 R 595495 CDS YP_005276491.1 378711598 11775751 complement(809122..809826) 1 NC_016902.1 PFAM: alanine racemase domain protein; KEGG: sdy:SDY_3122 hypothetical protein; alanine racemase 809826 11775751 EKO11_0777 Escherichia coli KO11FL alanine racemase YP_005276491.1 809122 R 595495 CDS YP_005276492.1 378711599 11775752 809844..810824 1 NC_016902.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: eoh:ECO103_3530 putative transporter; SMART: AAA ATPase; twitching motility protein 810824 11775752 EKO11_0778 Escherichia coli KO11FL twitching motility protein YP_005276492.1 809844 D 595495 CDS YP_005276493.1 378711600 11775753 complement(811000..811416) 1 NC_016902.1 KEGG: sbc:SbBS512_E3381 Holliday junction resolvase-like protein; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; Holliday junction resolvase YqgF 811416 11775753 EKO11_0779 Escherichia coli KO11FL Holliday junction resolvase YqgF YP_005276493.1 811000 R 595495 CDS YP_005276494.1 378711601 11775754 complement(811416..812051) 1 NC_016902.1 PFAM: protein of unknown function DUF179; KEGG: ebd:ECBD_0792 hypothetical protein; hypothetical protein 812051 11775754 EKO11_0780 Escherichia coli KO11FL hypothetical protein YP_005276494.1 811416 R 595495 CDS YP_005276495.1 378711602 11779350 complement(812088..813038) 1 NC_016902.1 TIGRFAM: glutathione synthetase; KEGG: ebd:ECBD_0793 glutathione synthetase; PFAM: glutathione synthetase ATP-binding; glutathione synthetase domain protein; glutathione synthetase 813038 11779350 EKO11_0781 Escherichia coli KO11FL glutathione synthetase YP_005276495.1 812088 R 595495 CDS YP_005276496.1 378711603 11775755 complement(813051..813782) 1 NC_016902.1 PFAM: protein of unknown function DUF558; KEGG: sbc:SbBS512_E3378 16S ribosomal RNA methyltransferase RsmE; hypothetical protein 813782 11775755 EKO11_0782 Escherichia coli KO11FL hypothetical protein YP_005276496.1 813051 R 595495 CDS YP_005276497.1 378711604 11775756 complement(813862..814569) 1 NC_016902.1 KEGG: sbc:SbBS512_E3377 endonuclease I; PFAM: Endonuclease I; Deoxyribonuclease I 814569 11775756 EKO11_0783 Escherichia coli KO11FL Deoxyribonuclease I YP_005276497.1 813862 R 595495 CDS YP_005276498.1 378711605 11775757 complement(814664..815161) 1 NC_016902.1 KEGG: eok:G2583_3603 hypothetical protein; manually curated; SMART: protein of unknown function SprT; hypothetical protein 815161 11775757 EKO11_0784 Escherichia coli KO11FL hypothetical protein YP_005276498.1 814664 R 595495 CDS YP_005276499.1 378711606 11775758 complement(815238..816632) 1 NC_016902.1 TIGRFAM: sugar transporter; KEGG: sdy:SDY_3129 galactose-proton symport of transport system; sugar transporter 816632 11775758 EKO11_0785 Escherichia coli KO11FL sugar transporter YP_005276499.1 815238 R 595495 CDS YP_005276500.1 378711607 11779351 complement(817068..818222) 1 NC_016902.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: sdy:SDY_3130 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 818222 11779351 EKO11_0786 Escherichia coli KO11FL S-adenosylmethionine synthetase YP_005276500.1 817068 R 595495 CDS YP_005276501.1 378711608 11775759 818278..818529 1 NC_016902.1 KEGG: eok:G2583_3600 hypothetical protein; hypothetical protein 818529 11775759 EKO11_0787 Escherichia coli KO11FL hypothetical protein YP_005276501.1 818278 D 595495 CDS YP_005276502.1 378711609 11775760 819017..820993 1 NC_016902.1 KEGG: sdy:SDY_3134 arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; arginine decarboxylase 820993 11775760 EKO11_0788 Escherichia coli KO11FL arginine decarboxylase YP_005276502.1 819017 D 595495 CDS YP_005276503.1 378711610 11775761 821139..821870 1 NC_016902.1 KEGG: eoi:ECO111_3685 putative lipoprotein; putative lipoprotein 821870 11775761 EKO11_0789 Escherichia coli KO11FL putative lipoprotein YP_005276503.1 821139 D 595495 CDS YP_005276504.1 378711611 11775762 822006..822926 1 NC_016902.1 KEGG: sbo:SBO_3052 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; agmatinase 822926 11775762 EKO11_0790 Escherichia coli KO11FL agmatinase YP_005276504.1 822006 D 595495 CDS YP_005276505.1 378711612 11775763 complement(823132..823890) 1 NC_016902.1 PFAM: peptidase M48 Ste24p; KEGG: eoi:ECO111_3676 putative peptidase; peptidase M48 Ste24p 823890 11775763 EKO11_0791 Escherichia coli KO11FL peptidase M48 Ste24p YP_005276505.1 823132 R 595495 CDS YP_005276506.1 378711613 11775764 824168..826159 1 NC_016902.1 KEGG: ebd:ECBD_0803 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; transketolase 826159 11775764 EKO11_0792 Escherichia coli KO11FL transketolase YP_005276506.1 824168 D 595495 CDS YP_005276507.1 378711614 11775765 826473..826916 1 NC_016902.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ebd:ECBD_0805 putative mannitol phosphotransferase subunit EIIA; putative PTS IIA-like nitrogen-regulatory protein PtsN 826916 11775765 EKO11_0793 Escherichia coli KO11FL putative PTS IIA-like nitrogen-regulatory protein PtsN YP_005276507.1 826473 D 595495 CDS YP_005276508.1 378711615 11775766 826944..828332 1 NC_016902.1 TIGRFAM: PTS system, mannitol-specific IIC subunit; KEGG: sbc:SbBS512_E3365 PTS system, mannitol-specific cryptic EIICB component; PFAM: phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit; PTS system mannitol-specific transporter subunit IIC 828332 11775766 EKO11_0794 Escherichia coli KO11FL PTS system mannitol-specific transporter subunit IIC YP_005276508.1 826944 D 595495 CDS YP_005276509.1 378711616 11775767 828347..829624 1 NC_016902.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eoh:ECO103_3511 putative dehydrogenase; alcohol dehydrogenase 829624 11775767 EKO11_0795 Escherichia coli KO11FL alcohol dehydrogenase YP_005276509.1 828347 D 595495 CDS YP_005276510.1 378711617 11775768 829621..830586 1 NC_016902.1 TIGRFAM: fructose-1,6-bisphosphatase, class II; KEGG: sfv:SFV_2982 fructose-1,6-bisphosphatase II-like protein; PFAM: GlpX family protein; fructose-1,6-bisphosphatase 830586 11775768 EKO11_0796 Escherichia coli KO11FL fructose-1,6-bisphosphatase YP_005276510.1 829621 D 595495 CDS YP_005276511.1 378711618 11775769 830608..831117 1 NC_016902.1 PFAM: Mannitol repressor; KEGG: eoh:ECO103_3509 putative DNA-binding transcriptional regulator; mannitol repressor, MtlR 831117 11775769 EKO11_0797 Escherichia coli KO11FL mannitol repressor, MtlR YP_005276511.1 830608 D 595495 CDS YP_005276512.1 378711619 11775770 831114..831827 1 NC_016902.1 KEGG: ssn:SSON_3085 putative fructose transport system kinase; putative fructose transport system kinase 831827 11775770 EKO11_0798 Escherichia coli KO11FL putative fructose transport system kinase YP_005276512.1 831114 D 595495 CDS YP_005276513.1 378711620 11779352 complement(831799..832476) 1 NC_016902.1 KEGG: sfx:S3118 putative ATP-binding protein of ABC transport system; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 832476 11779352 EKO11_0799 Escherichia coli KO11FL ABC transporter YP_005276513.1 831799 R 595495 CDS YP_005276514.1 378711621 11775771 complement(832470..833147) 1 NC_016902.1 KEGG: sbc:SbBS512_E3356 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 833147 11775771 EKO11_0800 Escherichia coli KO11FL ABC transporter YP_005276514.1 832470 R 595495 CDS YP_005276515.1 378711622 11775772 complement(833135..833842) 1 NC_016902.1 KEGG: eoh:ECO103_3505 putative lipoprotein; putative lipoprotein 833842 11775772 EKO11_0801 Escherichia coli KO11FL putative lipoprotein YP_005276515.1 833135 R 595495 CDS YP_005276516.1 378711623 11775773 complement(833843..834421) 1 NC_016902.1 KEGG: sbc:SbBS512_E3354 hypothetical protein; hypothetical protein 834421 11775773 EKO11_0802 Escherichia coli KO11FL hypothetical protein YP_005276516.1 833843 R 595495 CDS YP_005276517.1 378711624 11775774 complement(834444..834875) 1 NC_016902.1 PFAM: protein of unknown function DUF296; KEGG: sdy:SDY_3154 hypothetical protein; hypothetical protein 834875 11775774 EKO11_0803 Escherichia coli KO11FL hypothetical protein YP_005276517.1 834444 R 595495 CDS YP_005276518.1 378711625 11775775 835247..836266 1 NC_016902.1 TIGRFAM: D-erythrose-4-phosphate dehydrogenase; KEGG: sbc:SbBS512_E3352 erythrose 4-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; D-erythrose-4-phosphate dehydrogenase 836266 11775775 EKO11_0804 Escherichia coli KO11FL D-erythrose-4-phosphate dehydrogenase YP_005276518.1 835247 D 595495 CDS YP_005276519.1 378711626 11775776 836316..837479 1 NC_016902.1 KEGG: sbo:SBO_3067 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; phosphoglycerate kinase 837479 11775776 EKO11_0805 Escherichia coli KO11FL phosphoglycerate kinase YP_005276519.1 836316 D 595495 CDS YP_005276520.1 378711627 11775777 837694..838773 1 NC_016902.1 KEGG: sdy:SDY_3157 fructose-bisphosphate aldolase; TIGRFAM: fructose-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase 838773 11775777 EKO11_0806 Escherichia coli KO11FL fructose-bisphosphate aldolase YP_005276520.1 837694 D 595495 CDS YP_005276521.1 378711628 11775779 839131..839991 1 NC_016902.1 PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; KEGG: sbc:SbBS512_E3349 mechanosensitive channel MscS; mechanosensitive ion channel MscS 839991 11775779 EKO11_0808 Escherichia coli KO11FL mechanosensitive ion channel MscS YP_005276521.1 839131 D 595495 CDS YP_005276522.1 378711629 11775780 840130..840765 1 NC_016902.1 KEGG: sdy:SDY_3159 arginine exporter protein; TIGRFAM: L-lysine exporter; PFAM: Lysine exporter protein (LYSE/YGGA); L-lysine exporter 840765 11775780 EKO11_0809 Escherichia coli KO11FL L-lysine exporter YP_005276522.1 840130 D 595495 CDS YP_005276523.1 378711630 11779353 840858..841598 1 NC_016902.1 PFAM: protein of unknown function DUF541; KEGG: sdy:SDY_3160 hypothetical protein; hypothetical protein 841598 11779353 EKO11_0810 Escherichia coli KO11FL hypothetical protein YP_005276523.1 840858 D 595495 CDS YP_005276524.1 378711631 11775781 841765..842661 1 NC_016902.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ebd:ECBD_0817 transcriptional regulator, LysR family; LysR family transcriptional regulator 842661 11775781 EKO11_0811 Escherichia coli KO11FL LysR family transcriptional regulator YP_005276524.1 841765 D 595495 CDS YP_005276525.1 378711632 11775782 complement(842658..844136) 1 NC_016902.1 TIGRFAM: succinate CoA transferase; KEGG: ssn:SSON_3071 putative coenzyme A transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 844136 11775782 EKO11_0812 Escherichia coli KO11FL succinate CoA transferase YP_005276525.1 842658 R 595495 CDS YP_005276526.1 378711633 11775783 complement(844160..844945) 1 NC_016902.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sbc:SbBS512_E3341 methylmalonyl-CoA decarboxylase; Enoyl-CoA hydratase/isomerase 844945 11775783 EKO11_0813 Escherichia coli KO11FL Enoyl-CoA hydratase/isomerase YP_005276526.1 844160 R 595495 CDS YP_005276527.1 378711634 11775784 complement(844956..845951) 1 NC_016902.1 KEGG: ebd:ECBD_0820 arginine/ornithine transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; LAO/AO transport system ATPase 845951 11775784 EKO11_0814 Escherichia coli KO11FL LAO/AO transport system ATPase YP_005276527.1 844956 R 595495 CDS YP_005276528.1 378711635 11775785 complement(845944..848088) 1 NC_016902.1 TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: eok:G2583_3571 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 848088 11775785 EKO11_0815 Escherichia coli KO11FL methylmalonyl-CoA mutase large subunit YP_005276528.1 845944 R 595495 CDS YP_005276529.1 378711636 11775786 complement(848292..849185) 1 NC_016902.1 KEGG: sdy:SDY_3165 chromosome replication initiation inhibitor protein; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate-binding; LysR family transcriptional regulator ArgP 849185 11775786 EKO11_0816 Escherichia coli KO11FL LysR family transcriptional regulator ArgP YP_005276529.1 848292 R 595495 CDS YP_005276530.1 378711637 11775787 849327..849557 1 NC_016902.1 PFAM: LysR substrate-binding; KEGG: ebd:ECBD_0823 uncharacterized protein YqfE; LysR substrate-binding protein 849557 11775787 EKO11_0817 Escherichia coli KO11FL LysR substrate-binding protein YP_005276530.1 849327 D 595495 CDS YP_005276531.1 378711638 11775788 849613..850272 1 NC_016902.1 TIGRFAM: ribose 5-phosphate isomerase; KEGG: sdy:SDY_3168 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 850272 11775788 EKO11_0818 Escherichia coli KO11FL ribose 5-phosphate isomerase YP_005276531.1 849613 D 595495 CDS YP_005276532.1 378711639 11775789 850527..851759 1 NC_016902.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: sbo:SBO_3080 D-3-phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 851759 11775789 EKO11_0819 Escherichia coli KO11FL D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_005276532.1 850527 D 595495 CDS YP_005276533.1 378711640 11775790 complement(852540..853142) 1 NC_016902.1 KEGG: eok:G2583_3564 putative ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 853142 11775790 EKO11_0820 Escherichia coli KO11FL 5-formyltetrahydrofolate cyclo-ligase YP_005276533.1 852540 R 595495 CDS YP_005276534.1 378711641 11775792 complement(853388..853717) 1 NC_016902.1 PFAM: protein of unknown function DUF710; KEGG: sbc:SbBS512_E3331 Z-ring-associated protein; hypothetical protein 853717 11775792 EKO11_0821 Escherichia coli KO11FL hypothetical protein YP_005276534.1 853388 R 595495 CDS YP_005276535.1 378711642 11775793 853885..854463 1 NC_016902.1 KEGG: sbc:SbBS512_E3330 hypothetical protein; TIGRFAM: yecA family protein; PFAM: Uncharacterised protein family UPF0149 (YgfB); yecA family protein 854463 11775793 EKO11_0822 Escherichia coli KO11FL yecA family protein YP_005276535.1 853885 D 595495 CDS YP_005276536.1 378711643 11775794 854489..855814 1 NC_016902.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: ebd:ECBD_0829 proline aminopeptidase P II; peptidase M24 855814 11775794 EKO11_0823 Escherichia coli KO11FL peptidase M24 YP_005276536.1 854489 D 595495 CDS YP_005276537.1 378711644 11775795 855811..856989 1 NC_016902.1 KEGG: eoi:ECO111_3645 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: FAD dependent oxidoreductase; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase 856989 11775795 EKO11_0824 Escherichia coli KO11FL UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase YP_005276537.1 855811 D 595495 CDS YP_005276538.1 378711645 11779354 857012..858214 1 NC_016902.1 KEGG: ssn:SSON_3059 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase 858214 11779354 EKO11_0825 Escherichia coli KO11FL UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase YP_005276538.1 857012 D 595495 CDS YP_005276539.1 378711646 11775796 858661..859755 1 NC_016902.1 KEGG: sbo:SBO_3087 glycine cleavage system aminomethyltransferase T; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; glycine cleavage system T protein 859755 11775796 EKO11_0826 Escherichia coli KO11FL glycine cleavage system T protein YP_005276539.1 858661 D 595495 CDS YP_005276540.1 378711647 11775797 859779..860168 1 NC_016902.1 KEGG: sbc:SbBS512_E3325 glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; glycine cleavage system H protein 860168 11775797 EKO11_0827 Escherichia coli KO11FL glycine cleavage system H protein YP_005276540.1 859779 D 595495 CDS YP_005276541.1 378711648 11775798 860287..863160 1 NC_016902.1 KEGG: eoh:ECO103_3479 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: Glycine cleavage system P-protein-like; glycine dehydrogenase 863160 11775798 EKO11_0828 Escherichia coli KO11FL glycine dehydrogenase YP_005276541.1 860287 D 595495 CDS YP_005276542.1 378711649 11775799 863426..864169 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eoi:ECO111_3640 hypothetical protein; short-chain dehydrogenase/reductase SDR 864169 11775799 EKO11_0829 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005276542.1 863426 D 595495 CDS YP_005276543.1 378711650 11775800 complement(864226..865659) 1 NC_016902.1 PFAM: glycoside hydrolase family 1; KEGG: eoi:ECO111_3639 6-phospho-beta-glucosidase A; glycoside hydrolase 865659 11775800 EKO11_0830 Escherichia coli KO11FL glycoside hydrolase YP_005276543.1 864226 R 595495 CDS YP_005276544.1 378711651 11775801 865704..866015 1 NC_016902.1 PFAM: protein of unknown function DUF437; KEGG: ssn:SSON_3053 hypothetical protein; hypothetical protein 866015 11775801 EKO11_0831 Escherichia coli KO11FL hypothetical protein YP_005276544.1 865704 D 595495 CDS YP_005276545.1 378711652 11779355 866179..866838 1 NC_016902.1 KEGG: sbc:SbBS512_E3320 channel protein, hemolysin III family; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; hemolysin III family channel protein 866838 11779355 EKO11_0832 Escherichia coli KO11FL hemolysin III family channel protein YP_005276545.1 866179 D 595495 CDS YP_005276546.1 378711653 11775802 complement(866915..867895) 1 NC_016902.1 KEGG: sfv:SFV_2946 putative global regulator; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); folate-binding protein YgfZ 867895 11775802 EKO11_0833 Escherichia coli KO11FL folate-binding protein YgfZ YP_005276546.1 866915 R 595495 CDS YP_005276547.1 378711654 11775803 868138..868404 1 NC_016902.1 PFAM: protein of unknown function DUF339; KEGG: sdy:SDY_3185 hypothetical protein; hypothetical protein 868404 11775803 EKO11_0834 Escherichia coli KO11FL hypothetical protein YP_005276547.1 868138 D 595495 CDS YP_005276548.1 378711655 11775804 868385..868792 1 NC_016902.1 PFAM: protein of unknown function DUF1434; KEGG: eoh:ECO103_3471 hypothetical protein; hypothetical protein 868792 11775804 EKO11_0835 Escherichia coli KO11FL hypothetical protein YP_005276548.1 868385 D 595495 CDS YP_005276549.1 378711656 11779356 complement(868832..869353) 1 NC_016902.1 KEGG: sdy:SDY_3187 flavodoxin FldB; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; flavodoxin 869353 11779356 EKO11_0836 Escherichia coli KO11FL flavodoxin YP_005276549.1 868832 R 595495 CDS YP_005276550.1 378711657 11775805 869465..870361 1 NC_016902.1 KEGG: sdy:SDY_3188 site-specific tyrosine recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; tyrosine recombinase XerD 870361 11775805 EKO11_0837 Escherichia coli KO11FL tyrosine recombinase XerD YP_005276550.1 869465 D 595495 CDS YP_005276551.1 378711658 11775806 870386..871096 1 NC_016902.1 PFAM: Disulphide bond isomerase, DsbC/G-like; KEGG: eok:G2583_3546 thiol:disulfide interchange protein DsbC precursor; disulfide bond isomerase, DsbC/G-like protein 871096 11775806 EKO11_0838 Escherichia coli KO11FL disulfide bond isomerase, DsbC/G-like protein YP_005276551.1 870386 D 595495 CDS YP_005276552.1 378711659 11775807 871102..872835 1 NC_016902.1 KEGG: sbo:SBO_3100 ssDNA exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; single-stranded-DNA-specific exonuclease RecJ 872835 11775807 EKO11_0839 Escherichia coli KO11FL single-stranded-DNA-specific exonuclease RecJ YP_005276552.1 871102 D 595495 CDS YP_005276553.1 378711660 11775808 join(872926..873000,873002..874024) 1 NC_016902.1 manually curated; KEGG: sfx:S3076 peptide chain release factor 2; peptide chain release factor 2 874024 11775808 EKO11_0840 Escherichia coli KO11FL peptide chain release factor 2 YP_005276553.1 872926 D 595495 CDS YP_005276554.1 378711661 11775809 874034..875551 1 NC_016902.1 TIGRFAM: lysyl-tRNA synthetase; KEGG: sbc:SbBS512_E3309 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; lysyl-tRNA synthetase 875551 11775809 EKO11_0841 Escherichia coli KO11FL lysyl-tRNA synthetase YP_005276554.1 874034 D 595495 CDS YP_005276555.1 378711662 11775810 complement(875594..876142) 1 NC_016902.1 TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; KEGG: sfv:SFV_2937 isopentenyl-diphosphate delta-isomerase; PFAM: NUDIX hydrolase; isopentenyl-diphosphate delta-isomerase 876142 11775810 EKO11_0842 Escherichia coli KO11FL isopentenyl-diphosphate delta-isomerase YP_005276555.1 875594 R 595495 CDS YP_005276556.1 378711663 11775811 complement(876265..876390) 1 NC_016902.1 KEGG: eoh:ECO103_3463 hypothetical protein; hypothetical protein 876390 11775811 EKO11_0843 Escherichia coli KO11FL hypothetical protein YP_005276556.1 876265 R 595495 CDS YP_005276557.1 378711664 11775812 complement(876392..877969) 1 NC_016902.1 manually curated; TIGRFAM: xanthine permease; uracil-xanthine permease; KEGG: eok:G2583_3541 putative xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; xanthine permease 877969 11775812 EKO11_0844 Escherichia coli KO11FL xanthine permease YP_005276557.1 876392 R 595495 CDS YP_005276558.1 378711665 11779357 878276..880195 1 NC_016902.1 KEGG: eoh:ECO103_3461 putative oxidoreductase Fe-S binding subunit; TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase, small subunit 880195 11779357 EKO11_0845 Escherichia coli KO11FL glutamate synthase, small subunit YP_005276558.1 878276 D 595495 CDS YP_005276559.1 378711666 11775813 880195..880683 1 NC_016902.1 KEGG: ssn:SSON_3038 putative oxidoreductase, Fe-S subunit; putative oxidoreductase, Fe-S subunit 880683 11775813 EKO11_0846 Escherichia coli KO11FL putative oxidoreductase, Fe-S subunit YP_005276559.1 880195 D 595495 CDS YP_005276560.1 378711667 11775814 complement(880719..882086) 1 NC_016902.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: ebd:ECBD_0853 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 882086 11775814 EKO11_0847 Escherichia coli KO11FL xanthine/uracil/vitamin C permease YP_005276560.1 880719 R 595495 CDS YP_005276561.1 378711668 11775815 complement(882122..883438) 1 NC_016902.1 KEGG: eoh:ECO103_3458 guanine deaminase; TIGRFAM: guanine deaminase; PFAM: amidohydrolase; guanine deaminase 883438 11775815 EKO11_0848 Escherichia coli KO11FL guanine deaminase YP_005276561.1 882122 R 595495 CDS YP_005276562.1 378711669 11779358 complement(883456..884856) 1 NC_016902.1 KEGG: eoh:ECO103_3457 putative transporter; TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 884856 11779358 EKO11_0849 Escherichia coli KO11FL uracil-xanthine permease YP_005276562.1 883456 R 595495 CDS YP_005276563.1 378711670 11775816 complement(885021..887891) 1 NC_016902.1 KEGG: ebw:BWG_2607 putative selenate reductase subunit YgfN; TIGRFAM: selenate reductase, molybdenum-binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; [2Fe-2S]-binding domain-containing protein; selenate reductase, molybdenum-binding subunit 887891 11775816 EKO11_0850 Escherichia coli KO11FL selenate reductase, molybdenum-binding subunit YP_005276563.1 885021 R 595495 CDS YP_005276564.1 378711671 11775817 complement(887888..888667) 1 NC_016902.1 KEGG: ssn:SSON_3034 putative selenate reductase subunit YgfM; TIGRFAM: selenate reductase, FAD-binding subunit; PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; selenate reductase, FAD-binding subunit 888667 11775817 EKO11_0851 Escherichia coli KO11FL selenate reductase, FAD-binding subunit YP_005276564.1 887888 R 595495 CDS YP_005276565.1 378711672 11775818 complement(888718..890046) 1 NC_016902.1 KEGG: eoi:ECO111_3617 putative chlorohydrolase/aminohydrolase; TIGRFAM: selenium metabolism protein SsnA; PFAM: amidohydrolase; selenium metabolism protein SsnA 890046 11775818 EKO11_0852 Escherichia coli KO11FL selenium metabolism protein SsnA YP_005276565.1 888718 R 595495 CDS YP_005276566.1 378711673 11775819 complement(890049..893147) 1 NC_016902.1 KEGG: eoh:ECO103_3453 putative selenate reductase subunit YgfK; TIGRFAM: selenate reductase YgfK; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; selenate reductase YgfK 893147 11775819 EKO11_0853 Escherichia coli KO11FL selenate reductase YgfK YP_005276566.1 890049 R 595495 CDS YP_005276567.1 378711674 11775820 complement(893469..894047) 1 NC_016902.1 TIGRFAM: molybdenum hydroxylase accessory protein, YgfJ family; KEGG: eoh:ECO103_3452 hypothetical protein; molybdenum hydroxylase accessory protein, YgfJ family 894047 11775820 EKO11_0854 Escherichia coli KO11FL molybdenum hydroxylase accessory protein, YgfJ family YP_005276567.1 893469 R 595495 CDS YP_005276568.1 378711675 11775821 894150..894920 1 NC_016902.1 KEGG: eoh:ECO103_3451 hypothetical protein; hypothetical protein 894920 11775821 EKO11_0855 Escherichia coli KO11FL hypothetical protein YP_005276568.1 894150 D 595495 CDS YP_005276569.1 378711676 11779359 894968..896593 1 NC_016902.1 KEGG: eoi:ECO111_3613 hypothetical protein; TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; PFAM: protein of unknown function DUF182; biotin/lipoyl attachment domain-containing protein; selenium-dependent molybdenum hydroxylase system protein, YqeB family 896593 11779359 EKO11_0856 Escherichia coli KO11FL selenium-dependent molybdenum hydroxylase system protein, YqeB family YP_005276569.1 894968 D 595495 CDS YP_005276570.1 378711677 11775822 complement(896634..897566) 1 NC_016902.1 TIGRFAM: carbamate kinase; KEGG: eoh:ECO103_3449 carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; carbamate kinase 897566 11775822 EKO11_0857 Escherichia coli KO11FL carbamate kinase YP_005276570.1 896634 R 595495 CDS YP_005276571.1 378711678 11775823 complement(897614..898999) 1 NC_016902.1 KEGG: sbo:SBO_3111 phenylhydantoinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; dihydropyrimidinase 898999 11775823 EKO11_0858 Escherichia coli KO11FL dihydropyrimidinase YP_005276571.1 897614 R 595495 CDS YP_005276572.1 378711679 11775824 complement(899052..900263) 1 NC_016902.1 KEGG: sbo:SBO_3112 peptidase; TIGRFAM: M20/DapE family protein YgeY; PFAM: peptidase M20; peptidase dimerisation domain protein; M20/DapE family protein YgeY 900263 11775824 EKO11_0859 Escherichia coli KO11FL M20/DapE family protein YgeY YP_005276572.1 899052 R 595495 CDS YP_005276573.1 378711680 11775825 complement(900321..901517) 1 NC_016902.1 KEGG: sbo:SBO_3113 diaminopropionate ammonia-lyase; TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; diaminopropionate ammonia-lyase 901517 11775825 EKO11_0860 Escherichia coli KO11FL diaminopropionate ammonia-lyase YP_005276573.1 900321 R 595495 CDS YP_005276574.1 378711681 11775826 complement(901575..902762) 1 NC_016902.1 KEGG: eoh:ECO103_3445 aspartate/ornithine carbamoyltransferase family protein; TIGRFAM: carbamoyltransferase YgeW; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; carbamoyltransferase YgeW 902762 11775826 EKO11_0861 Escherichia coli KO11FL carbamoyltransferase YgeW YP_005276574.1 901575 R 595495 CDS YP_005276575.1 378711682 11775827 903241..905019 1 NC_016902.1 KEGG: eoj:ECO26_3958 putative DNA-binding transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 905019 11775827 EKO11_0862 Escherichia coli KO11FL PAS modulated Fis family sigma-54-specific transcriptional regulator YP_005276575.1 903241 D 595495 CDS YP_005276576.1 378711683 11775828 complement(905059..905538) 1 NC_016902.1 PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: sbo:SBO_3117 xanthine dehydrogenase subunit XdhC; (2Fe-2S)-binding domain-containing protein 905538 11775828 EKO11_0863 Escherichia coli KO11FL (2Fe-2S)-binding domain-containing protein YP_005276576.1 905059 R 595495 CDS YP_005276577.1 378711684 11775829 complement(905535..906413) 1 NC_016902.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: sfv:SFV_2932 xanthine dehydrogenase subunit XdhB; molybdopterin dehydrogenase FAD-binding protein 906413 11775829 EKO11_0864 Escherichia coli KO11FL molybdopterin dehydrogenase FAD-binding protein YP_005276577.1 905535 R 595495 CDS YP_005276578.1 378711685 11775830 complement(906424..908721) 1 NC_016902.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: eoi:ECO111_3604 xanthine dehydrogenase subunit XdhA; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 908721 11775830 EKO11_0865 Escherichia coli KO11FL aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_005276578.1 906424 R 595495 CDS YP_005276579.1 378711686 11775831 909136..909891 1 NC_016902.1 KEGG: sbc:SbBS512_E3304 peptidase, M23B family; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; peptidase M23 909891 11775831 EKO11_0866 Escherichia coli KO11FL peptidase M23 YP_005276579.1 909136 D 595495 CDS YP_005276580.1 378711687 11775833 910277..911887 1 NC_016902.1 KEGG: eoh:ECO103_3433 hypothetical protein; hypothetical protein 911887 11775833 EKO11_0867 Escherichia coli KO11FL hypothetical protein YP_005276580.1 910277 D 595495 CDS YP_005276581.1 378711688 11775835 912956..913621 1 NC_016902.1 KEGG: eoh:ECO103_3430 surface presentation of antigens protein SpaP; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; Yop virulence translocation R 913621 11775835 EKO11_0869 Escherichia coli KO11FL Yop virulence translocation R YP_005276581.1 912956 D 595495 CDS YP_005276582.1 378711689 11775837 913892..914659 1 NC_016902.1 KEGG: eoi:ECO111_3596 type III secretion protein EpaR; TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; type III secretion protein SpaR/YscT/HrcT 914659 11775837 EKO11_0871 Escherichia coli KO11FL type III secretion protein SpaR/YscT/HrcT YP_005276582.1 913892 D 595495 CDS YP_005276583.1 378711690 11779360 914668..915399 1 NC_016902.1 PFAM: type III secretion exporter; KEGG: etw:ECSP_3819 surface presentation of antigens protein SpaS; type III secretion exporter 915399 11779360 EKO11_0872 Escherichia coli KO11FL type III secretion exporter YP_005276583.1 914668 D 595495 CDS YP_005276584.1 378711691 11775838 915426..915788 1 NC_016902.1 PFAM: type III secretion exporter; KEGG: etw:ECSP_3819 surface presentation of antigens protein SpaS; type III secretion exporter 915788 11775838 EKO11_0873 Escherichia coli KO11FL type III secretion exporter YP_005276584.1 915426 D 595495 CDS YP_005276585.1 378711692 11775839 complement(915849..916142) 1 NC_016902.1 PFAM: InvH outer membrane lipoprotein; KEGG: set:SEN2741 cell adherance/invasion protein; InvH outer membrane lipoprotein 916142 11775839 EKO11_0874 Escherichia coli KO11FL InvH outer membrane lipoprotein YP_005276585.1 915849 R 595495 CDS YP_005276586.1 378711693 11775840 complement(916213..916644) 1 NC_016902.1 PFAM: regulatory protein LuxR; KEGG: eoj:ECO26_3936 putative transcriptional regulator; regulatory protein LuxR 916644 11775840 EKO11_0875 Escherichia coli KO11FL regulatory protein LuxR YP_005276586.1 916213 R 595495 CDS YP_005276587.1 378711694 11775841 916902..918083 1 NC_016902.1 KEGG: eoh:ECO103_3424 type III secretion protein EprH; TIGRFAM: type III secretion system protein PrgH/EprH; PFAM: Type III secretion system, PrgH/EprH-like; type III secretion system protein PrgH/EprH 918083 11775841 EKO11_0876 Escherichia coli KO11FL type III secretion system protein PrgH/EprH YP_005276587.1 916902 D 595495 CDS YP_005276588.1 378711695 11775846 920232..920663 1 NC_016902.1 KEGG: eoj:ECO26_3930 hypothetical protein; hypothetical protein 920663 11775846 EKO11_0881 Escherichia coli KO11FL hypothetical protein YP_005276588.1 920232 D 595495 CDS YP_005276589.1 378711696 11775848 complement(921561..922037) 1 NC_016902.1 KEGG: etw:ECSP_3808 predicted lytic transglycosylase; manually curated; PFAM: Lytic transglycosylase catalytic; lytic transglycosylase 922037 11775848 EKO11_0884 Escherichia coli KO11FL lytic transglycosylase YP_005276589.1 921561 R 595495 CDS YP_005276590.1 378711697 11775849 complement(922120..922338) 1 NC_016902.1 KEGG: eoh:ECO103_3414 hypothetical protein; hypothetical protein 922338 11775849 EKO11_0885 Escherichia coli KO11FL hypothetical protein YP_005276590.1 922120 R 595495 CDS YP_005276591.1 378711698 11775850 complement(922505..923881) 1 NC_016902.1 PFAM: transcriptional regulator domain-containing protein; KEGG: ebw:BWG_2587 transcriptional regulator; transcriptional regulator CadC 923881 11775850 EKO11_0886 Escherichia coli KO11FL transcriptional regulator CadC YP_005276591.1 922505 R 595495 CDS YP_005276592.1 378711699 11775851 complement(924216..924707) 1 NC_016902.1 PFAM: Tetratricopeptide TPR_3 repeat-containing protein; KEGG: ssn:SSON_3011 hypothetical protein; Tetratricopeptide TPR_3 repeat-containing protein 924707 11775851 EKO11_0887 Escherichia coli KO11FL Tetratricopeptide TPR_3 repeat-containing protein YP_005276592.1 924216 R 595495 CDS YP_005276593.1 378711700 11775852 complement(924985..925422) 1 NC_016902.1 KEGG: eoi:ECO111_3579 hypothetical protein; hypothetical protein 925422 11775852 EKO11_0888 Escherichia coli KO11FL hypothetical protein YP_005276593.1 924985 R 595495 CDS YP_005276594.1 378711701 11775853 925616..926041 1 NC_016902.1 KEGG: eoj:ECO26_3922 hypothetical protein; hypothetical protein 926041 11775853 EKO11_0889 Escherichia coli KO11FL hypothetical protein YP_005276594.1 925616 D 595495 CDS YP_005276595.1 378711702 11779361 926017..926157 1 NC_016902.1 KEGG: fbc:FB2170_06780 hypothetical protein; hypothetical protein 926157 11779361 EKO11_0890 Escherichia coli KO11FL hypothetical protein YP_005276595.1 926017 D 595495 CDS YP_005276596.1 378711703 11775854 complement(926190..926672) 1 NC_016902.1 KEGG: ssn:SSON_3009 hypothetical protein; hypothetical protein 926672 11775854 EKO11_0891 Escherichia coli KO11FL hypothetical protein YP_005276596.1 926190 R 595495 CDS YP_005276597.1 378711704 11775855 complement(926665..927474) 1 NC_016902.1 KEGG: eoi:ECO111_3576 putative transcriptional regulator; manually curated; PFAM: transcriptional regulator domain-containing protein; transcriptional regulator CadC 927474 11775855 EKO11_0892 Escherichia coli KO11FL transcriptional regulator CadC YP_005276597.1 926665 R 595495 CDS YP_005276598.1 378711705 11779362 927595..927726 1 NC_016902.1 hypothetical protein 927726 11779362 EKO11_0893 Escherichia coli KO11FL hypothetical protein YP_005276598.1 927595 D 595495 CDS YP_005276599.1 378711706 11775856 complement(927808..928440) 1 NC_016902.1 KEGG: eok:G2583_3503 hypothetical protein; hypothetical protein 928440 11775856 EKO11_0894 Escherichia coli KO11FL hypothetical protein YP_005276599.1 927808 R 595495 CDS YP_005276600.1 378711707 11775857 complement(928900..930129) 1 NC_016902.1 KEGG: ebd:ECBD_0877 serine transporter; TIGRFAM: serine transporter; PFAM: Amino acid transporter transmembrane; serine transporter 930129 11775857 EKO11_0895 Escherichia coli KO11FL serine transporter YP_005276600.1 928900 R 595495 CDS YP_005276601.1 378711708 11775858 930384..931565 1 NC_016902.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ebd:ECBD_0878 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 931565 11775858 EKO11_0896 Escherichia coli KO11FL acetyl-CoA acetyltransferase YP_005276601.1 930384 D 595495 CDS YP_005276602.1 378711709 11775859 931852..932688 1 NC_016902.1 KEGG: eoh:ECO103_3403 5-keto-4-deoxyuronate isomerase; PFAM: KduI/IolB isomerase; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 932688 11775859 EKO11_0897 Escherichia coli KO11FL 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase YP_005276602.1 931852 D 595495 CDS YP_005276603.1 378711710 11775860 932718..933479 1 NC_016902.1 KEGG: ebr:ECB_02690 2-deoxy-D-gluconate 3-dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; 2-deoxy-D-gluconate 3-dehydrogenase 933479 11775860 EKO11_0898 Escherichia coli KO11FL 2-deoxy-D-gluconate 3-dehydrogenase YP_005276603.1 932718 D 595495 CDS YP_005276604.1 378711711 11775861 933794..935212 1 NC_016902.1 TIGRFAM: sugar transporter; KEGG: ssn:SSON_3001 low-affinity L-arabinose transport system proton symport protein; sugar transporter 935212 11775861 EKO11_0899 Escherichia coli KO11FL sugar transporter YP_005276604.1 933794 D 595495 CDS YP_005276605.1 378711712 11775862 935341..936033 1 NC_016902.1 KEGG: sbc:SbBS512_E3023 putative racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; aspartate racemase 936033 11775862 EKO11_0900 Escherichia coli KO11FL aspartate racemase YP_005276605.1 935341 D 595495 CDS YP_005276606.1 378711713 11775863 complement(936020..936955) 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sdy:SDY_3056 DNA-binding transcriptional regulator LysR; LysR family transcriptional regulator 936955 11775863 EKO11_0901 Escherichia coli KO11FL LysR family transcriptional regulator YP_005276606.1 936020 R 595495 CDS YP_005276607.1 378711714 11775864 937077..938339 1 NC_016902.1 KEGG: ebd:ECBD_0886 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 938339 11775864 EKO11_0902 Escherichia coli KO11FL diaminopimelate decarboxylase YP_005276607.1 937077 D 595495 CDS YP_005276608.1 378711715 11779363 complement(938346..939377) 1 NC_016902.1 KEGG: sbc:SbBS512_E3025 DNA-binding transcriptional regulator GalR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; LacI family transcriptional regulator 939377 11779363 EKO11_0903 Escherichia coli KO11FL LacI family transcriptional regulator YP_005276608.1 938346 R 595495 CDS YP_005276609.1 378711716 11779364 939963..942122 1 NC_016902.1 KEGG: ssn:SSON_2996 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; AMP-dependent synthetase and ligase 942122 11779364 EKO11_0904 Escherichia coli KO11FL AMP-dependent synthetase and ligase YP_005276609.1 939963 D 595495 CDS YP_005276610.1 378711717 11775865 942115..943308 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: ebd:ECBD_0889 lysophospholipid transporter LplT; major facilitator superfamily protein 943308 11775865 EKO11_0905 Escherichia coli KO11FL major facilitator superfamily protein YP_005276610.1 942115 D 595495 CDS YP_005276611.1 378711718 11775866 complement(943340..944380) 1 NC_016902.1 PFAM: aldo/keto reductase; KEGG: sfv:SFV_2912 putative aldo-keto reductase; aldo/keto reductase 944380 11775866 EKO11_0906 Escherichia coli KO11FL aldo/keto reductase YP_005276611.1 943340 R 595495 CDS YP_005276612.1 378711719 11775867 complement(944488..944706) 1 NC_016902.1 PFAM: protein of unknown function DUF903; KEGG: sdy:SDY_3050 hypothetical protein; hypothetical protein 944706 11775867 EKO11_0907 Escherichia coli KO11FL hypothetical protein YP_005276612.1 944488 R 595495 CDS YP_005276613.1 378711720 11775868 complement(944844..945557) 1 NC_016902.1 PFAM: Integral membrane protein TerC; KEGG: sdy:SDY_3049 putative transport protein; integral membrane protein TerC 945557 11775868 EKO11_0908 Escherichia coli KO11FL integral membrane protein TerC YP_005276613.1 944844 R 595495 CDS YP_005276614.1 378711721 11775869 complement(945626..946315) 1 NC_016902.1 KEGG: sdy:SDY_3048 DNA mismatch repair protein; TIGRFAM: DNA mismatch repair endonuclease mutH; PFAM: DNA mismatch repair protein MutH, conserved region; DNA mismatch repair endonuclease mutH 946315 11775869 EKO11_0909 Escherichia coli KO11FL DNA mismatch repair endonuclease mutH YP_005276614.1 945626 R 595495 CDS YP_005276615.1 378711722 11775870 946501..946647 1 NC_016902.1 KEGG: ebd:ECBD_0894 hypothetical protein; hypothetical protein 946647 11775870 EKO11_0910 Escherichia coli KO11FL hypothetical protein YP_005276615.1 946501 D 595495 CDS YP_005276616.1 378711723 11775871 947000..947530 1 NC_016902.1 PFAM: NUDIX hydrolase; KEGG: sdy:SDY_3047 dinucleoside polyphosphate hydrolase; NUDIX hydrolase 947530 11775871 EKO11_0911 Escherichia coli KO11FL NUDIX hydrolase YP_005276616.1 947000 D 595495 CDS YP_005276617.1 378711724 11775872 947543..949789 1 NC_016902.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; GAF domain protein; PEP-utilising protein mobile region; KEGG: ssn:SSON_2986 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; SMART: GAF domain protein; protein PtsP 949789 11775872 EKO11_0912 Escherichia coli KO11FL protein PtsP YP_005276617.1 947543 D 595495 CDS YP_005276618.1 378711725 11775873 949940..950815 1 NC_016902.1 KEGG: sdy:SDY_3045 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 950815 11775873 EKO11_0913 Escherichia coli KO11FL prolipoprotein diacylglyceryl transferase YP_005276618.1 949940 D 595495 CDS YP_005276619.1 378711726 11775874 950822..951616 1 NC_016902.1 TIGRFAM: thymidylate synthase; KEGG: ssn:SSON_2984 thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase 951616 11775874 EKO11_0914 Escherichia coli KO11FL thymidylate synthase YP_005276619.1 950822 D 595495 CDS YP_005276620.1 378711727 11775875 951801..952271 1 NC_016902.1 KEGG: sdy:SDY_3043 hypothetical protein; hypothetical protein 952271 11775875 EKO11_0915 Escherichia coli KO11FL hypothetical protein YP_005276620.1 951801 D 595495 CDS YP_005276621.1 378711728 11775876 952262..952825 1 NC_016902.1 KEGG: ssn:SSON_2982 hypothetical protein; hypothetical protein 952825 11775876 EKO11_0916 Escherichia coli KO11FL hypothetical protein YP_005276621.1 952262 D 595495 CDS YP_005276622.1 378711729 11775877 952822..953229 1 NC_016902.1 PFAM: Protein of unknown function DUF2509; KEGG: eoi:ECO111_3552 hypothetical protein; hypothetical protein 953229 11775877 EKO11_0917 Escherichia coli KO11FL hypothetical protein YP_005276622.1 952822 D 595495 CDS YP_005276623.1 378711730 11775878 953214..953537 1 NC_016902.1 KEGG: ssn:SSON_2980 hypothetical protein; hypothetical protein 953537 11775878 EKO11_0918 Escherichia coli KO11FL hypothetical protein YP_005276623.1 953214 D 595495 CDS YP_005276624.1 378711731 11775879 953550..956918 1 NC_016902.1 KEGG: ebd:ECBD_0903 exonuclease V subunit gamma; TIGRFAM: exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 956918 11775879 EKO11_0919 Escherichia coli KO11FL exodeoxyribonuclease V subunit gamma YP_005276624.1 953550 D 595495 CDS YP_005276625.1 378711732 11775880 957094..959982 1 NC_016902.1 PFAM: peptidase M16 domain protein; KEGG: eok:G2583_3475 protease III; peptidase M16 domain-containing protein 959982 11775880 EKO11_0920 Escherichia coli KO11FL peptidase M16 domain-containing protein YP_005276625.1 957094 D 595495 CDS YP_005276626.1 378711733 11775881 959975..963517 1 NC_016902.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; KEGG: eoj:ECO26_3892 exonuclease V subunit beta; PFAM: UvrD/REP helicase; exodeoxyribonuclease V subunit beta 963517 11775881 EKO11_0921 Escherichia coli KO11FL exodeoxyribonuclease V subunit beta YP_005276626.1 959975 D 595495 CDS YP_005276627.1 378711734 11779365 963517..965343 1 NC_016902.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: eoh:ECO103_3378 exonuclease V subunit alpha; SMART: AAA ATPase; exodeoxyribonuclease V subunit alpha 965343 11779365 EKO11_0922 Escherichia coli KO11FL exodeoxyribonuclease V subunit alpha YP_005276627.1 963517 D 595495 CDS YP_005276628.1 378711735 11775882 complement(965405..966736) 1 NC_016902.1 TIGRFAM: amino-acid N-acetyltransferase; KEGG: sbo:SBO_2708 N-acetylglutamate synthase; PFAM: aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase; amino-acid N-acetyltransferase 966736 11775882 EKO11_0923 Escherichia coli KO11FL amino-acid N-acetyltransferase YP_005276628.1 965405 R 595495 CDS YP_005276629.1 378711736 11775883 966968..968221 1 NC_016902.1 KEGG: sbc:SbBS512_E3045 N-acetylmuramoyl-L-alanine amidase AmiC; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 968221 11775883 EKO11_0924 Escherichia coli KO11FL cell wall hydrolase/autolysin YP_005276629.1 966968 D 595495 CDS YP_005276630.1 378711737 11775884 complement(968567..969115) 1 NC_016902.1 KEGG: mag:amb0993 transcriptional regulatory protein; hypothetical protein 969115 11775884 EKO11_0925 Escherichia coli KO11FL hypothetical protein YP_005276630.1 968567 R 595495 CDS YP_005276631.1 378711738 11775885 complement(969180..970556) 1 NC_016902.1 PFAM: ImpA-like; ImpA domain protein; KEGG: eoh:ECO103_3375 hypothetical protein; ImpA domain-containing protein 970556 11775885 EKO11_0926 Escherichia coli KO11FL ImpA domain-containing protein YP_005276631.1 969180 R 595495 CDS YP_005276632.1 378711739 11775886 complement(970556..970984) 1 NC_016902.1 KEGG: eoh:ECO103_3374 hypothetical protein; TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; type VI secretion system lysozyme-like protein 970984 11775886 EKO11_0927 Escherichia coli KO11FL type VI secretion system lysozyme-like protein YP_005276632.1 970556 R 595495 CDS YP_005276633.1 378711740 11775887 complement(970988..971524) 1 NC_016902.1 TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: eoh:ECO103_3373 hypothetical protein; type VI secretion lipoprotein 971524 11775887 EKO11_0928 Escherichia coli KO11FL type VI secretion lipoprotein YP_005276633.1 970988 R 595495 CDS YP_005276634.1 378711741 11775888 complement(971505..972584) 1 NC_016902.1 KEGG: eoh:ECO103_3372 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; type VI secretion protein 972584 11775888 EKO11_0929 Escherichia coli KO11FL type VI secretion protein YP_005276634.1 971505 R 595495 CDS YP_005276635.1 378711742 11775889 complement(972548..974308) 1 NC_016902.1 KEGG: eoh:ECO103_3371 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; type VI secretion protein 974308 11775889 EKO11_0930 Escherichia coli KO11FL type VI secretion protein YP_005276635.1 972548 R 595495 CDS YP_005276636.1 378711743 11775890 complement(974868..975290) 1 NC_016902.1 KEGG: cbe:Cbei_1210 sporulation protein YlmC/YmxH; hypothetical protein 975290 11775890 EKO11_0931 Escherichia coli KO11FL hypothetical protein YP_005276636.1 974868 R 595495 CDS YP_005276637.1 378711744 11775891 976316..976627 1 NC_016902.1 PFAM: transposase IS3/IS911 family protein; KEGG: eoh:ECO103_3642 putative IS602 transposase OrfA; transposase IS3/IS911 family protein 976627 11775891 EKO11_0933 Escherichia coli KO11FL transposase IS3/IS911 family protein YP_005276637.1 976316 D 595495 CDS YP_005276638.1 378711745 11775893 complement(977968..979326) 1 NC_016902.1 KEGG: eoh:ECO103_3369 hypothetical protein; TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; type VI secretion-associated protein 979326 11775893 EKO11_0935 Escherichia coli KO11FL type VI secretion-associated protein YP_005276638.1 977968 R 595495 CDS YP_005276639.1 378711746 11775895 complement(979871..979978) 1 NC_016902.1 KEGG: ypy:YPK_0623 hypothetical protein; hypothetical protein 979978 11775895 EKO11_0937 Escherichia coli KO11FL hypothetical protein YP_005276639.1 979871 R 595495 CDS YP_005276640.1 378711747 11775896 complement(980428..981345) 1 NC_016902.1 KEGG: eoh:ECO103_3370 hypothetical protein; hypothetical protein 981345 11775896 EKO11_0938 Escherichia coli KO11FL hypothetical protein YP_005276640.1 980428 R 595495 CDS YP_005276641.1 378711748 11775897 complement(981351..982988) 1 NC_016902.1 KEGG: eoh:ECO103_3369 hypothetical protein; TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; type VI secretion-associated protein 982988 11775897 EKO11_0939 Escherichia coli KO11FL type VI secretion-associated protein YP_005276641.1 981351 R 595495 CDS YP_005276642.1 378711749 11779366 complement(982954..986343) 1 NC_016902.1 PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: eoh:ECO103_3368 hypothetical protein; ImcF domain-containing protein 986343 11779366 EKO11_0940 Escherichia coli KO11FL ImcF domain-containing protein YP_005276642.1 982954 R 595495 CDS YP_005276643.1 378711750 11779367 complement(986343..987557) 1 NC_016902.1 KEGG: eoh:ECO103_3367 hypothetical protein; hypothetical protein 987557 11779367 EKO11_0941 Escherichia coli KO11FL hypothetical protein YP_005276643.1 986343 R 595495 CDS YP_005276644.1 378711751 11775898 complement(987635..988117) 1 NC_016902.1 KEGG: eoh:ECO103_3366 hypothetical protein; hypothetical protein 988117 11775898 EKO11_0942 Escherichia coli KO11FL hypothetical protein YP_005276644.1 987635 R 595495 CDS YP_005276645.1 378711752 11775899 complement(988810..991317) 1 NC_016902.1 KEGG: eoh:ECO103_3364 hypothetical protein; TIGRFAM: Rhs element Vgr protein; type VI secretion system Vgr family protein; PFAM: Protein of unknown function DUF2345; Rhs element Vgr protein 991317 11775899 EKO11_0944 Escherichia coli KO11FL Rhs element Vgr protein YP_005276645.1 988810 R 595495 CDS YP_005276646.1 378711753 11775900 complement(991642..992178) 1 NC_016902.1 KEGG: pmm:PMM1081 4-alpha-glucanotransferase; hypothetical protein 992178 11775900 EKO11_0945 Escherichia coli KO11FL hypothetical protein YP_005276646.1 991642 R 595495 CDS YP_005276647.1 378711754 11775901 complement(992168..993019) 1 NC_016902.1 KEGG: abm:p2ABSDF0021 hypothetical protein; hypothetical protein 993019 11775901 EKO11_0946 Escherichia coli KO11FL hypothetical protein YP_005276647.1 992168 R 595495 CDS YP_005276648.1 378711755 11779369 complement(993021..995507) 1 NC_016902.1 KEGG: eoh:ECO103_3364 hypothetical protein; TIGRFAM: Rhs element Vgr protein; type VI secretion system Vgr family protein; PFAM: Protein of unknown function DUF2345; Rhs element Vgr protein 995507 11779369 EKO11_0947 Escherichia coli KO11FL Rhs element Vgr protein YP_005276648.1 993021 R 595495 CDS YP_005276649.1 378711756 11775902 complement(995519..998164) 1 NC_016902.1 TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: eoh:ECO103_3363 putative ATP-dependent Clp proteinase ATP-binding chain; SMART: AAA ATPase; type VI secretion ATPase, ClpV1 family 998164 11775902 EKO11_0948 Escherichia coli KO11FL type VI secretion ATPase, ClpV1 family YP_005276649.1 995519 R 595495 CDS YP_005276650.1 378711757 11775903 complement(998355..998846) 1 NC_016902.1 KEGG: eoh:ECO103_3362 Hcp-like protein; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; type VI secretion system effector 998846 11775903 EKO11_0949 Escherichia coli KO11FL type VI secretion system effector YP_005276650.1 998355 R 595495 CDS YP_005276651.1 378711758 11775904 complement(998904..1000556) 1 NC_016902.1 PFAM: OmpA/MotB domain protein; KEGG: eoh:ECO103_3361 putative outer membrane lipoprotein; OmpA/MotB domain-containing protein 1000556 11775904 EKO11_0950 Escherichia coli KO11FL OmpA/MotB domain-containing protein YP_005276651.1 998904 R 595495 CDS YP_005276652.1 378711759 11775905 complement(1000569..1001234) 1 NC_016902.1 KEGG: eoh:ECO103_3360 hypothetical protein; TIGRFAM: type IV / VI secretion system protein, DotU family; PFAM: Type IV / VI secretion system, DotU; DotU family type IV / VI secretion system protein 1001234 11775905 EKO11_0951 Escherichia coli KO11FL DotU family type IV / VI secretion system protein YP_005276652.1 1000569 R 595495 CDS YP_005276653.1 378711760 11775906 complement(1001231..1002568) 1 NC_016902.1 KEGG: eoh:ECO103_3359 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; type VI secretion protein 1002568 11775906 EKO11_0952 Escherichia coli KO11FL type VI secretion protein YP_005276653.1 1001231 R 595495 CDS YP_005276654.1 378711761 11775907 complement(1002586..1004124) 1 NC_016902.1 KEGG: eoh:ECO103_3358 hypothetical protein; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; type VI secretion protein EvpB 1004124 11775907 EKO11_0953 Escherichia coli KO11FL type VI secretion protein EvpB YP_005276654.1 1002586 R 595495 CDS YP_005276655.1 378711762 11775908 complement(1004183..1004683) 1 NC_016902.1 KEGG: eoh:ECO103_3357 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Uncharacterised conserved protein UCP028301; type VI secretion protein 1004683 11775908 EKO11_0954 Escherichia coli KO11FL type VI secretion protein YP_005276655.1 1004183 R 595495 CDS YP_005276656.1 378711763 11775911 1006777..1007583 1 NC_016902.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ssn:SSON_2969 putative enzyme; UBA/THIF-type NAD/FAD binding protein 1007583 11775911 EKO11_0956 Escherichia coli KO11FL UBA/THIF-type NAD/FAD binding protein YP_005276656.1 1006777 D 595495 CDS YP_005276657.1 378711764 11775912 complement(1007634..1008077) 1 NC_016902.1 KEGG: ssn:SSON_2968 hypothetical protein; TIGRFAM: cysteine desulfurase, sulfur acceptor subunit CsdE; PFAM: Fe-S metabolism associated SufE; cysteine desulfurase, sulfur acceptor subunit CsdE 1008077 11775912 EKO11_0957 Escherichia coli KO11FL cysteine desulfurase, sulfur acceptor subunit CsdE YP_005276657.1 1007634 R 595495 CDS YP_005276658.1 378711765 11775913 complement(1008077..1009282) 1 NC_016902.1 PFAM: aminotransferase class V; KEGG: ssn:SSON_2967 cysteine sulfinate desulfinase; class V aminotransferase 1009282 11775913 EKO11_0958 Escherichia coli KO11FL class V aminotransferase YP_005276658.1 1008077 R 595495 CDS YP_005276659.1 378711766 11779370 1009474..1009701 1 NC_016902.1 PFAM: protein of unknown function DUF903; KEGG: sdy:SDY_3027 hypothetical protein; hypothetical protein 1009701 11779370 EKO11_0959 Escherichia coli KO11FL hypothetical protein YP_005276659.1 1009474 D 595495 CDS YP_005276660.1 378711767 11779371 1010052..1010969 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbc:SbBS512_E3062 DNA-binding transcriptional activator GcvA; LysR family transcriptional regulator 1010969 11779371 EKO11_0960 Escherichia coli KO11FL LysR family transcriptional regulator YP_005276660.1 1010052 D 595495 CDS YP_005276661.1 378711768 11775914 1010988..1011383 1 NC_016902.1 PFAM: protein of unknown function DUF423; KEGG: sdy:SDY_3025 hypothetical protein; hypothetical protein 1011383 11775914 EKO11_0961 Escherichia coli KO11FL hypothetical protein YP_005276661.1 1010988 D 595495 CDS YP_005276662.1 378711769 11775915 1011376..1012476 1 NC_016902.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ebd:ECBD_0916 putative RNA 2'-O-ribose methyltransferase; ribosomal RNA methyltransferase RrmJ/FtsJ 1012476 11775915 EKO11_0962 Escherichia coli KO11FL ribosomal RNA methyltransferase RrmJ/FtsJ YP_005276662.1 1011376 D 595495 CDS YP_005276663.1 378711770 11779372 complement(1012520..1013251) 1 NC_016902.1 KEGG: ssn:SSON_2962 DNA-binding transcriptional activator FucR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 1013251 11779372 EKO11_0963 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005276663.1 1012520 R 595495 CDS YP_005276664.1 378711771 11775916 complement(1013309..1013731) 1 NC_016902.1 PFAM: RbsD or FucU transport; KEGG: sdy:SDY_3022 protein of fucose operon; transport protein RbsD/FucU 1013731 11775916 EKO11_0964 Escherichia coli KO11FL transport protein RbsD/FucU YP_005276664.1 1013309 R 595495 CDS YP_005276665.1 378711772 11775917 complement(1013733..1015181) 1 NC_016902.1 manually curated; TIGRFAM: L-fuculokinase; KEGG: eoi:ECO111_3528 L-fuculokinase; PFAM: Carbohydrate kinase, FGGY-like; L-fuculokinase 1015181 11775917 EKO11_0965 Escherichia coli KO11FL L-fuculokinase YP_005276665.1 1013733 R 595495 CDS YP_005276666.1 378711773 11779373 complement(1015260..1017035) 1 NC_016902.1 TIGRFAM: L-fucose isomerase; KEGG: sfv:SFV_2881 L-fucose isomerase; PFAM: L-fucose isomerase-like-like; L-fucose isomerase _1 domain protein; L-fucose isomerase _2 domain protein; L-fucose isomerase 1017035 11779373 EKO11_0966 Escherichia coli KO11FL L-fucose isomerase YP_005276666.1 1015260 R 595495 CDS YP_005276667.1 378711774 11775918 complement(1017068..1018384) 1 NC_016902.1 KEGG: eoh:ECO103_3344 L-fucose transporter; TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1; L-fucose transporter 1018384 11775918 EKO11_0967 Escherichia coli KO11FL L-fucose transporter YP_005276667.1 1017068 R 595495 CDS YP_005276668.1 378711775 11775919 1018931..1019578 1 NC_016902.1 KEGG: eok:G2583_3453 L-fuculose phosphate aldolase; TIGRFAM: L-fuculose phosphate aldolase; PFAM: class II aldolase/adducin family protein; L-fuculose phosphate aldolase 1019578 11775919 EKO11_0968 Escherichia coli KO11FL L-fuculose phosphate aldolase YP_005276668.1 1018931 D 595495 CDS YP_005276669.1 378711776 11775920 1019606..1020754 1 NC_016902.1 KEGG: eok:G2583_3452 lactaldehyde reductase; TIGRFAM: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase; lactaldehyde reductase 1020754 11775920 EKO11_0969 Escherichia coli KO11FL lactaldehyde reductase YP_005276669.1 1019606 D 595495 CDS YP_005276670.1 378711777 11775921 complement(1020809..1021654) 1 NC_016902.1 KEGG: sdy:SDY_3015 exonuclease IX; PFAM: 5'-3' exonuclease, SAM-fold domain; 5'-3' exonuclease, N-terminal resolvase-like domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 5'-3' exonuclease 1021654 11775921 EKO11_0970 Escherichia coli KO11FL 5'-3' exonuclease YP_005276670.1 1020809 R 595495 CDS YP_005276671.1 378711778 11775922 complement(1021676..1023043) 1 NC_016902.1 TIGRFAM: L-serine dehydratase 1; KEGG: sbc:SbBS512_E3075 L-serine ammonia-lyase 2; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 1023043 11775922 EKO11_0971 Escherichia coli KO11FL L-serine dehydratase 1 YP_005276671.1 1021676 R 595495 CDS YP_005276672.1 378711779 11775923 complement(1023101..1024390) 1 NC_016902.1 TIGRFAM: serine transporter; KEGG: sbo:SBO_2677 serine transporter; serine transporter 1024390 11775923 EKO11_0972 Escherichia coli KO11FL serine transporter YP_005276672.1 1023101 R 595495 CDS YP_005276673.1 378711780 11775924 complement(1024947..1026311) 1 NC_016902.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: sbo:SBO_2676 hypothetical protein; hypothetical protein 1026311 11775924 EKO11_0973 Escherichia coli KO11FL hypothetical protein YP_005276673.1 1024947 R 595495 CDS YP_005276674.1 378711781 11775925 complement(1026423..1027271) 1 NC_016902.1 TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: sbc:SbBS512_E3078 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; 7-cyano-7-deazaguanine reductase 1027271 11775925 EKO11_0974 Escherichia coli KO11FL 7-cyano-7-deazaguanine reductase YP_005276674.1 1026423 R 595495 CDS YP_005276675.1 378711782 11775926 1027339..1027884 1 NC_016902.1 PFAM: Syd family protein; KEGG: sbo:SBO_2674 SecY interacting protein Syd; Syd family protein 1027884 11775926 EKO11_0975 Escherichia coli KO11FL Syd family protein YP_005276675.1 1027339 D 595495 CDS YP_005276676.1 378711783 11775927 1028506..1028835 1 NC_016902.1 PFAM: protein of unknown function DUF446; KEGG: sdy:SDY_3009 hypothetical protein; hypothetical protein 1028835 11775927 EKO11_0976 Escherichia coli KO11FL hypothetical protein YP_005276676.1 1028506 D 595495 CDS YP_005276677.1 378711784 11775928 1028835..1029617 1 NC_016902.1 PFAM: pseudouridine synthase; KEGG: eoh:ECO103_3334 tRNA pseudouridine synthase C; pseudouridine synthase 1029617 11775928 EKO11_0977 Escherichia coli KO11FL pseudouridine synthase YP_005276677.1 1028835 D 595495 CDS YP_005276678.1 378711785 11775929 1029635..1030084 1 NC_016902.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_3007 flavodoxin; flavodoxin/nitric oxide synthase 1030084 11775929 EKO11_0978 Escherichia coli KO11FL flavodoxin/nitric oxide synthase YP_005276678.1 1029635 D 595495 CDS YP_005276679.1 378711786 11775930 1030519..1031871 1 NC_016902.1 KEGG: ebd:ECBD_0940 D-galactonate transporter; TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter 1031871 11775930 EKO11_0979 Escherichia coli KO11FL d-galactonate transporter YP_005276679.1 1030519 D 595495 CDS YP_005276680.1 378711787 11775931 1031873..1033213 1 NC_016902.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ssn:SSON_2945 putative glucarate dehydratase; mandelate racemase/muconate lactonizing protein 1033213 11775931 EKO11_0980 Escherichia coli KO11FL mandelate racemase/muconate lactonizing protein YP_005276680.1 1031873 D 595495 CDS YP_005276681.1 378711788 11775932 1033234..1034574 1 NC_016902.1 TIGRFAM: glucarate dehydratase; KEGG: eoh:ECO103_3330 (D)-glucarate dehydratase 1; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase 1034574 11775932 EKO11_0981 Escherichia coli KO11FL glucarate dehydratase YP_005276681.1 1033234 D 595495 CDS YP_005276682.1 378711789 11775933 1037619..1038920 1 NC_016902.1 KEGG: sbo:SBO_2666 23S rRNA 5-methyluridine methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; TrmA family RNA methyltransferase 1038920 11775933 EKO11_0983 Escherichia coli KO11FL TrmA family RNA methyltransferase YP_005276682.1 1037619 D 595495 CDS YP_005276683.1 378711790 11775934 1038968..1041202 1 NC_016902.1 TIGRFAM: RelA/SpoT family protein; KEGG: sdy:SDY_3001 GDP/GTP pyrophosphokinase; PFAM: RelA/SpoT domain protein; TGS domain-containing protein; amino acid-binding ACT domain protein; (p)ppGpp synthetase I SpoT/RelA 1041202 11775934 EKO11_0984 Escherichia coli KO11FL (p)ppGpp synthetase I SpoT/RelA YP_005276683.1 1038968 D 595495 CDS YP_005276684.1 378711791 11775935 1041280..1041528 1 NC_016902.1 PFAM: SpoVT/AbrB domain-containing protein; KEGG: sdy:SDY_3000 antitoxin MazE; transcriptional regulator/antitoxin MazE 1041528 11775935 EKO11_0985 Escherichia coli KO11FL transcriptional regulator/antitoxin MazE YP_005276684.1 1041280 D 595495 CDS YP_005276685.1 378711792 11775936 1041528..1041863 1 NC_016902.1 PFAM: PemK family protein; KEGG: sdy:SDY_2999 toxin ChpA; transcriptional modulator of MazE/toxin MazF 1041863 11775936 EKO11_0986 Escherichia coli KO11FL transcriptional modulator of MazE/toxin MazF YP_005276685.1 1041528 D 595495 CDS YP_005276686.1 378711793 11779375 1041934..1042725 1 NC_016902.1 KEGG: sbc:SbBS512_E3092 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; MazG family protein 1042725 11779375 EKO11_0987 Escherichia coli KO11FL MazG family protein YP_005276686.1 1041934 D 595495 CDS YP_005276687.1 378711794 11775937 1042953..1044590 1 NC_016902.1 TIGRFAM: CTP synthase; KEGG: sdy:SDY_2997 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; CTP synthase 1044590 11775937 EKO11_0988 Escherichia coli KO11FL CTP synthase YP_005276687.1 1042953 D 595495 CDS YP_005276688.1 378711795 11775938 1044678..1045976 1 NC_016902.1 TIGRFAM: enolase; KEGG: sdy:SDY_2996 phosphopyruvate hydratase; PFAM: Enolase-like; enolase 1045976 11775938 EKO11_0989 Escherichia coli KO11FL enolase YP_005276688.1 1044678 D 595495 CDS YP_005276689.1 378711796 11775939 complement(1046036..1046908) 1 NC_016902.1 PFAM: protein of unknown function DUF477; KEGG: eoi:ECO111_3502 hypothetical protein; hypothetical protein 1046908 11775939 EKO11_0990 Escherichia coli KO11FL hypothetical protein YP_005276689.1 1046036 R 595495 CDS YP_005276690.1 378711797 11775940 complement(1046922..1047062) 1 NC_016902.1 KEGG: ebd:ECBD_0952 hypothetical protein; hypothetical protein 1047062 11775940 EKO11_0991 Escherichia coli KO11FL hypothetical protein YP_005276690.1 1046922 R 595495 CDS YP_005276691.1 378711798 11779376 1047201..1047872 1 NC_016902.1 PFAM: Radical SAM domain protein; KEGG: sdy:SDY_2981 hypothetical protein; radical SAM protein 1047872 11779376 EKO11_0992 Escherichia coli KO11FL radical SAM protein YP_005276691.1 1047201 D 595495 CDS YP_005276692.1 378711799 11775941 complement(1049490..1050968) 1 NC_016902.1 PFAM: Carbohydrate kinase, FGGY-like; KEGG: eoh:ECO103_3319 putative kinase; Carbohydrate kinase, FGGY-like protein 1050968 11775941 EKO11_0993 Escherichia coli KO11FL Carbohydrate kinase, FGGY-like protein YP_005276692.1 1049490 R 595495 CDS YP_005276693.1 378711800 11775942 complement(1050995..1052272) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoh:ECO103_3318 putative transporter; major facilitator superfamily protein 1052272 11775942 EKO11_0994 Escherichia coli KO11FL major facilitator superfamily protein YP_005276693.1 1050995 R 595495 CDS YP_005276694.1 378711801 11775943 1052591..1053376 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ebd:ECBD_0956 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1053376 11775943 EKO11_0995 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005276694.1 1052591 D 595495 CDS YP_005276695.1 378711802 11775944 1053446..1054900 1 NC_016902.1 KEGG: eoh:ECO103_3316 putative FAD containing dehydrogenase; PFAM: FAD linked oxidase domain protein; alkylglycerone-phosphate synthase 1054900 11775944 EKO11_0996 Escherichia coli KO11FL alkylglycerone-phosphate synthase YP_005276695.1 1053446 D 595495 CDS YP_005276696.1 378711803 11775945 1054922..1056331 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: ebd:ECBD_0958 major facilitator superfamily MFS_1; major facilitator superfamily protein 1056331 11775945 EKO11_0997 Escherichia coli KO11FL major facilitator superfamily protein YP_005276696.1 1054922 D 595495 CDS YP_005276697.1 378711804 11775946 1056309..1057088 1 NC_016902.1 KEGG: ssn:SSON_2923 putative transport protein; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SMART: Electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunit alpha/beta 1057088 11775946 EKO11_0998 Escherichia coli KO11FL electron transfer flavoprotein subunit alpha/beta YP_005276697.1 1056309 D 595495 CDS YP_005276698.1 378711805 11775947 1057085..1057945 1 NC_016902.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: ssn:SSON_2922 putative flavoprotein; electron transfer flavoprotein subunit alpha 1057945 11775947 EKO11_0999 Escherichia coli KO11FL electron transfer flavoprotein subunit alpha YP_005276698.1 1057085 D 595495 CDS YP_005276699.1 378711806 11775948 complement(1058093..1058668) 1 NC_016902.1 PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: ebd:ECBD_0961 glycerol-3-phosphate responsive antiterminator, GlpP; glycerol-3-phosphate responsive antiterminator GlpP 1058668 11775948 EKO11_1000 Escherichia coli KO11FL glycerol-3-phosphate responsive antiterminator GlpP YP_005276699.1 1058093 R 595495 CDS YP_005276700.1 378711807 11775949 complement(1058685..1058945) 1 NC_016902.1 KEGG: ssn:SSON_2920 hypothetical protein; hypothetical protein 1058945 11775949 EKO11_1001 Escherichia coli KO11FL hypothetical protein YP_005276700.1 1058685 R 595495 CDS YP_005276701.1 378711808 11775950 complement(1058936..1060207) 1 NC_016902.1 PFAM: FAD dependent oxidoreductase; KEGG: ssn:SSON_2919 hypothetical protein; FAD dependent oxidoreductase 1060207 11775950 EKO11_1002 Escherichia coli KO11FL FAD dependent oxidoreductase YP_005276701.1 1058936 R 595495 CDS YP_005276702.1 378711809 11775951 complement(1060285..1060734) 1 NC_016902.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; manually curated; KEGG: sfv:SFV_2740 putative 6-pyruvoyl tetrahydrobiopterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase; 6-pyruvoyl-tetrahydropterin synthase 1060734 11775951 EKO11_1003 Escherichia coli KO11FL 6-pyruvoyl-tetrahydropterin synthase YP_005276702.1 1060285 R 595495 CDS YP_005276703.1 378711810 11775952 1060966..1062765 1 NC_016902.1 KEGG: eoj:ECO26_3835 sulfite reductase subunit alpha; TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: FAD-binding domain protein; flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; sulfite reductase (NADPH) flavoprotein, alpha chain 1062765 11775952 EKO11_1004 Escherichia coli KO11FL sulfite reductase (NADPH) flavoprotein, alpha chain YP_005276703.1 1060966 D 595495 CDS YP_005276704.1 378711811 11775953 1062765..1064477 1 NC_016902.1 KEGG: sbc:SbBS512_E3112 sulfite reductase subunit beta; TIGRFAM: sulfite reductase (NADPH) hemoprotein, beta-component; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; sulfite reductase (NADPH) hemoprotein subunit beta 1064477 11775953 EKO11_1005 Escherichia coli KO11FL sulfite reductase (NADPH) hemoprotein subunit beta YP_005276704.1 1062765 D 595495 CDS YP_005276705.1 378711812 11775954 1064551..1065285 1 NC_016902.1 KEGG: eoi:ECO111_3487 phosphoadenosine phosphosulfate reductase; TIGRFAM: phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 1065285 11775954 EKO11_1006 Escherichia coli KO11FL phosphoadenosine phosphosulfate reductase YP_005276705.1 1064551 D 595495 CDS YP_005276706.1 378711813 11779377 1065550..1065702 1 NC_016902.1 PFAM: Hok/gef cell toxic protein; KEGG: sbc:SbBS512_E3114 hok/gef family protein; Hok/gef cell toxic protein 1065702 11779377 EKO11_1007 Escherichia coli KO11FL Hok/gef cell toxic protein YP_005276706.1 1065550 D 595495 CDS YP_005276707.1 378711814 11775955 1065897..1068596 1 NC_016902.1 KEGG: eoi:ECO111_3485 putative helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; SMART: DEAD-like helicase; CRISPR-associated helicase Cas3 1068596 11775955 EKO11_1008 Escherichia coli KO11FL CRISPR-associated helicase Cas3 YP_005276707.1 1065897 D 595495 CDS YP_005276708.1 378711815 11775956 1068694..1070256 1 NC_016902.1 KEGG: eoj:ECO26_3829 hypothetical protein; TIGRFAM: CRISPR-associated protein, Cse1 family; PFAM: CRISPR-associated protein Cse1; Cse1 family CRISPR-associated protein 1070256 11775956 EKO11_1009 Escherichia coli KO11FL Cse1 family CRISPR-associated protein YP_005276708.1 1068694 D 595495 CDS YP_005276709.1 378711816 11775957 1070253..1070792 1 NC_016902.1 KEGG: eoi:ECO111_3483 hypothetical protein; TIGRFAM: CRISPR-associated protein, Cse2 family; PFAM: CRISPR-associated protein Cse2; Cse2 family CRISPR-associated protein 1070792 11775957 EKO11_1010 Escherichia coli KO11FL Cse2 family CRISPR-associated protein YP_005276709.1 1070253 D 595495 CDS YP_005276710.1 378711817 11775958 1070804..1071859 1 NC_016902.1 KEGG: eoi:ECO111_3482 hypothetical protein; TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CRISPR-associated protein CT1975; CRISPR-associated protein, Cse4 family 1071859 11775958 EKO11_1011 Escherichia coli KO11FL CRISPR-associated protein, Cse4 family YP_005276710.1 1070804 D 595495 CDS YP_005276711.1 378711818 11779378 1071870..1072616 1 NC_016902.1 KEGG: eok:G2583_3405 CRISPR-associated protein Cas5; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein, Cas5; CRISPR-associated protein Cas5 family 1072616 11779378 EKO11_1012 Escherichia coli KO11FL CRISPR-associated protein Cas5 family YP_005276711.1 1071870 D 595495 CDS YP_005276712.1 378711819 11775959 1072598..1073248 1 NC_016902.1 KEGG: eok:G2583_3404 CRISPR-associated protein, CSE3 family; TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; CRISPR-associated protein, Cse3 family 1073248 11775959 EKO11_1013 Escherichia coli KO11FL CRISPR-associated protein, Cse3 family YP_005276712.1 1072598 D 595495 CDS YP_005276713.1 378711820 11775960 1073245..1074165 1 NC_016902.1 KEGG: sbo:SBO_2765 hypothetical protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; CRISPR-associated protein Cas1 1074165 11775960 EKO11_1014 Escherichia coli KO11FL CRISPR-associated protein Cas1 YP_005276713.1 1073245 D 595495 CDS YP_005276714.1 378711821 11775961 1074165..1074458 1 NC_016902.1 KEGG: sbc:SbBS512_E3120 hypothetical protein; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 1074458 11775961 EKO11_1015 Escherichia coli KO11FL CRISPR-associated protein Cas2 YP_005276714.1 1074165 D 595495 CDS YP_005276715.1 378711822 11775962 complement(1075519..1076556) 1 NC_016902.1 PFAM: peptidase M28; KEGG: sbc:SbBS512_E3121 alkaline phosphatase isozyme conversion aminopeptidase; peptidase M28 1076556 11775962 EKO11_1016 Escherichia coli KO11FL peptidase M28 YP_005276715.1 1075519 R 595495 CDS YP_005276716.1 378711823 11775963 1076808..1077716 1 NC_016902.1 KEGG: sfv:SFV_2746 sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; sulfate adenylyltransferase, small subunit 1077716 11775963 EKO11_1017 Escherichia coli KO11FL sulfate adenylyltransferase, small subunit YP_005276716.1 1076808 D 595495 CDS YP_005276717.1 378711824 11775964 1077718..1079145 1 NC_016902.1 TIGRFAM: sulfate adenylyltransferase, large subunit; KEGG: ssn:SSON_2899 sulfate adenylyltransferase subunit 1; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit 1079145 11775964 EKO11_1018 Escherichia coli KO11FL sulfate adenylyltransferase, large subunit YP_005276717.1 1077718 D 595495 CDS YP_005276718.1 378711825 11775965 1079145..1079750 1 NC_016902.1 TIGRFAM: adenylylsulfate kinase; KEGG: sdy:SDY_2949 adenylylsulfate kinase; PFAM: adenylylsulfate kinase; adenylylsulfate kinase 1079750 11775965 EKO11_1019 Escherichia coli KO11FL adenylylsulfate kinase YP_005276718.1 1079145 D 595495 CDS YP_005276719.1 378711826 11775966 1079800..1080123 1 NC_016902.1 KEGG: sdy:SDY_2948 hypothetical protein; hypothetical protein 1080123 11775966 EKO11_1020 Escherichia coli KO11FL hypothetical protein YP_005276719.1 1079800 D 595495 CDS YP_005276720.1 378711827 11775967 1080317..1080628 1 NC_016902.1 PFAM: Septum formation initiator; KEGG: sdy:SDY_2947 cell division protein FtsB; septum formation initiator 1080628 11775967 EKO11_1021 Escherichia coli KO11FL septum formation initiator YP_005276720.1 1080317 D 595495 CDS YP_005276721.1 378711828 11775968 1080647..1081357 1 NC_016902.1 KEGG: sdy:SDY_2946 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1081357 11775968 EKO11_1022 Escherichia coli KO11FL 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_005276721.1 1080647 D 595495 CDS YP_005276722.1 378711829 11775969 1081357..1081836 1 NC_016902.1 KEGG: sdy:SDY_2945 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1081836 11775969 EKO11_1023 Escherichia coli KO11FL 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_005276722.1 1081357 D 595495 CDS YP_005276723.1 378711830 11775970 1081833..1082882 1 NC_016902.1 PFAM: tRNA pseudouridine synthase D TruD; KEGG: sdy:SDY_2944 tRNA pseudouridine synthase D; tRNA pseudouridine synthase D TruD 1082882 11775970 EKO11_1024 Escherichia coli KO11FL tRNA pseudouridine synthase D TruD YP_005276723.1 1081833 D 595495 CDS YP_005276724.1 378711831 11775971 1082863..1083624 1 NC_016902.1 KEGG: efe:EFER_0324 stationary phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 1083624 11775971 EKO11_1025 Escherichia coli KO11FL stationary-phase survival protein SurE YP_005276724.1 1082863 D 595495 CDS YP_005276725.1 378711832 11775972 1083618..1084244 1 NC_016902.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: sdy:SDY_2942 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1084244 11775972 EKO11_1026 Escherichia coli KO11FL protein-L-isoaspartate O-methyltransferase YP_005276725.1 1083618 D 595495 CDS YP_005276726.1 378711833 11779379 1084384..1085523 1 NC_016902.1 KEGG: ebd:ECBD_0982 lipoprotein NlpD; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; peptidase M23 1085523 11779379 EKO11_1027 Escherichia coli KO11FL peptidase M23 YP_005276726.1 1084384 D 595495 CDS YP_005276727.1 378711834 11775973 1085550..1086578 1 NC_016902.1 manually curated; TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma factor, sigma-70 family; KEGG: sfl:SF2764 RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; RpoD subfamily RNA polymerase sigma-70 subunit 1086578 11775973 EKO11_1028 Escherichia coli KO11FL RpoD subfamily RNA polymerase sigma-70 subunit YP_005276727.1 1085550 D 595495 CDS YP_005276728.1 378711835 11775974 complement(1086699..1087106) 1 NC_016902.1 KEGG: eoh:ECO103_3282 transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 1087106 11775974 EKO11_1029 Escherichia coli KO11FL MarR family transcriptional regulator YP_005276728.1 1086699 R 595495 CDS YP_005276729.1 378711836 11775975 1087253..1087846 1 NC_016902.1 KEGG: sfx:S2955 phenylacrylic acid decarboxylase-like protein; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1087846 11775975 EKO11_1030 Escherichia coli KO11FL 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005276729.1 1087253 D 595495 CDS YP_005276730.1 378711837 11775976 1087846..1089273 1 NC_016902.1 KEGG: eoj:ECO26_3807 putative 4-hydroxybenzoate decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; UbiD family decarboxylase 1089273 11775976 EKO11_1031 Escherichia coli KO11FL UbiD family decarboxylase YP_005276730.1 1087846 D 595495 CDS YP_005276731.1 378711838 11779380 1089284..1089520 1 NC_016902.1 KEGG: eoi:ECO111_3461 hypothetical protein; hypothetical protein 1089520 11779380 EKO11_1032 Escherichia coli KO11FL hypothetical protein YP_005276731.1 1089284 D 595495 CDS YP_005276732.1 378711839 11775977 complement(1089559..1090923) 1 NC_016902.1 KEGG: eoh:ECO103_3278 inner membrane permease YgbN; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; gluconate transporter 1090923 11775977 EKO11_1033 Escherichia coli KO11FL gluconate transporter YP_005276732.1 1089559 R 595495 CDS YP_005276733.1 378711840 11775978 complement(1091012..1091788) 1 NC_016902.1 KEGG: eoi:ECO111_3459 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; Hydroxypyruvate isomerase 1091788 11775978 EKO11_1034 Escherichia coli KO11FL Hydroxypyruvate isomerase YP_005276733.1 1091012 R 595495 CDS YP_005276734.1 378711841 11775979 complement(1091793..1092431) 1 NC_016902.1 PFAM: class II aldolase/adducin family protein; KEGG: sbc:SbBS512_E3136 putative aldolase; class II aldolase/adducin family protein 1092431 11775979 EKO11_1035 Escherichia coli KO11FL class II aldolase/adducin family protein YP_005276734.1 1091793 R 595495 CDS YP_005276735.1 378711842 11775980 complement(1092428..1093690) 1 NC_016902.1 PFAM: type III effector Hrp-dependent outers; KEGG: eoj:ECO26_3802 hypothetical protein; type III effector Hrp-dependent outer 1093690 11775980 EKO11_1036 Escherichia coli KO11FL type III effector Hrp-dependent outer YP_005276735.1 1092428 R 595495 CDS YP_005276736.1 378711843 11775981 complement(1093687..1094595) 1 NC_016902.1 KEGG: sbc:SbBS512_E3138 NAD binding domain of 6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 1094595 11775981 EKO11_1037 Escherichia coli KO11FL 2-hydroxy-3-oxopropionate reductase YP_005276736.1 1093687 R 595495 CDS YP_005276737.1 378711844 11775982 1094791..1095558 1 NC_016902.1 KEGG: sbo:SBO_2785 putative DeoR-type transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 1095558 11775982 EKO11_1038 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005276737.1 1094791 D 595495 CDS YP_005276738.1 378711845 11775983 complement(1095609..1096265) 1 NC_016902.1 PFAM: metallophosphoesterase; KEGG: eoh:ECO103_3272 serine/threonine-specific protein phosphatase 2; metallophosphoesterase 1096265 11775983 EKO11_1039 Escherichia coli KO11FL metallophosphoesterase YP_005276738.1 1095609 R 595495 CDS YP_005276739.1 378711846 11775984 complement(1096371..1098932) 1 NC_016902.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; KEGG: eok:G2583_3383 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; DNA mismatch repair protein MutS 1098932 11775984 EKO11_1040 Escherichia coli KO11FL DNA mismatch repair protein MutS YP_005276739.1 1096371 R 595495 CDS YP_005276740.1 378711847 11775985 1099008..1099187 1 NC_016902.1 KEGG: ebd:ECBD_0992 hypothetical protein; hypothetical protein 1099187 11775985 EKO11_1041 Escherichia coli KO11FL hypothetical protein YP_005276740.1 1099008 D 595495 CDS YP_005276741.1 378711848 11775986 1099219..1099572 1 NC_016902.1 KEGG: sbc:SbBS512_E3145 hypothetical protein; hypothetical protein 1099572 11775986 EKO11_1042 Escherichia coli KO11FL hypothetical protein YP_005276741.1 1099219 D 595495 CDS YP_005276742.1 378711849 11775987 complement(1099609..1101687) 1 NC_016902.1 KEGG: eok:G2583_3380 formate hydrogenlyase transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; GAF domain protein; Fis family NifA subfamily transcriptional regulator 1101687 11775987 EKO11_1043 Escherichia coli KO11FL Fis family NifA subfamily transcriptional regulator YP_005276742.1 1099609 R 595495 CDS YP_005276743.1 378711850 11775988 complement(1101761..1102771) 1 NC_016902.1 KEGG: eok:G2583_3379 hydrogenase maturation factor; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; hydrogenase expression/formation protein HypE 1102771 11775988 EKO11_1044 Escherichia coli KO11FL hydrogenase expression/formation protein HypE YP_005276743.1 1101761 R 595495 CDS YP_005276744.1 378711851 11775989 complement(1102768..1103889) 1 NC_016902.1 KEGG: sbc:SbBS512_E3148 hydrogenase expression/formation protein HypD; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; hydrogenase expression/formation protein HypD 1103889 11775989 EKO11_1045 Escherichia coli KO11FL hydrogenase expression/formation protein HypD YP_005276744.1 1102768 R 595495 CDS YP_005276745.1 378711852 11775990 complement(1103889..1104161) 1 NC_016902.1 KEGG: sdy:SDY_2925 hydrogenase assembly chaperone; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase assembly chaperone HypC/HupF 1104161 11775990 EKO11_1046 Escherichia coli KO11FL hydrogenase assembly chaperone HypC/HupF YP_005276745.1 1103889 R 595495 CDS YP_005276746.1 378711853 11779381 complement(1104152..1105024) 1 NC_016902.1 KEGG: sbc:SbBS512_E3150 hydrogenase nickel incorporation protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; hydrogenase nickel incorporation protein HypB 1105024 11779381 EKO11_1047 Escherichia coli KO11FL hydrogenase nickel incorporation protein HypB YP_005276746.1 1104152 R 595495 CDS YP_005276747.1 378711854 11775991 complement(1105028..1105378) 1 NC_016902.1 KEGG: ssn:SSON_2873 hydrogenase nickel incorporation protein; TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; hydrogenase nickel incorporation protein HypA 1105378 11775991 EKO11_1048 Escherichia coli KO11FL hydrogenase nickel incorporation protein HypA YP_005276747.1 1105028 R 595495 CDS YP_005276748.1 378711855 11779382 1105590..1106051 1 NC_016902.1 KEGG: sfv:SFV_2778 formate hydrogenlyase regulatory protein HycA; formate hydrogenlyase regulatory protein HycA 1106051 11779382 EKO11_1049 Escherichia coli KO11FL formate hydrogenlyase regulatory protein HycA YP_005276748.1 1105590 D 595495 CDS YP_005276749.1 378711856 11775992 1106176..1106787 1 NC_016902.1 KEGG: sdy:SDY_2921 small subunit of hydrogenase-3, iron-sulfur protein; small subunit of hydrogenase-3, iron-sulfur protein 1106787 11775992 EKO11_1050 Escherichia coli KO11FL small subunit of hydrogenase-3, iron-sulfur protein YP_005276749.1 1106176 D 595495 CDS YP_005276750.1 378711857 11775993 1106784..1108610 1 NC_016902.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ebd:ECBD_1002 formate hydrogenlyase subunit 3; NADH/ubiquinone/plastoquinone 1108610 11775993 EKO11_1051 Escherichia coli KO11FL NADH/ubiquinone/plastoquinone YP_005276750.1 1106784 D 595495 CDS YP_005276751.1 378711858 11779383 1108613..1109536 1 NC_016902.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: ebd:ECBD_1003 respiratory-chain NADH dehydrogenase subunit 1; respiratory-chain NADH dehydrogenase subunit 1 1109536 11779383 EKO11_1052 Escherichia coli KO11FL respiratory-chain NADH dehydrogenase subunit 1 YP_005276751.1 1108613 D 595495 CDS YP_005276752.1 378711859 11775994 1109554..1111263 1 NC_016902.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; nickel-dependent hydrogenase large subunit; NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: sbo:SBO_2797 large subunit of hydrogenase 3; NADH dehydrogenase (ubiquinone) 30 kDa subunit 1111263 11775994 EKO11_1053 Escherichia coli KO11FL NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_005276752.1 1109554 D 595495 CDS YP_005276753.1 378711860 11775995 1111273..1111815 1 NC_016902.1 KEGG: sbo:SBO_2798 formate hydrogenlyase complex iron-sulfur subunit; formate hydrogenlyase complex iron-sulfur subunit 1111815 11775995 EKO11_1054 Escherichia coli KO11FL formate hydrogenlyase complex iron-sulfur subunit YP_005276753.1 1111273 D 595495 CDS YP_005276754.1 378711861 11775996 1111815..1112582 1 NC_016902.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: ebd:ECBD_1006 NADH ubiquinone oxidoreductase 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 1112582 11775996 EKO11_1055 Escherichia coli KO11FL NADH ubiquinone oxidoreductase 20 kDa subunit YP_005276754.1 1111815 D 595495 CDS YP_005276755.1 378711862 11775997 1112579..1112989 1 NC_016902.1 PFAM: formate hydrogenlyase maturation HycH; KEGG: sbc:SbBS512_E3158 formate hydrogenlyase maturation protein; formate hydrogenlyase maturation HycH 1112989 11775997 EKO11_1056 Escherichia coli KO11FL formate hydrogenlyase maturation HycH YP_005276755.1 1112579 D 595495 CDS YP_005276756.1 378711863 11775998 1112982..1113452 1 NC_016902.1 KEGG: sbc:SbBS512_E3159 hydrogenase 3 maturation protease; TIGRFAM: hydrogenase maturation protease HycI; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; hydrogenase maturation protease HycI 1113452 11775998 EKO11_1057 Escherichia coli KO11FL hydrogenase maturation protease HycI YP_005276756.1 1112982 D 595495 CDS YP_005276757.1 378711864 11775999 1113742..1114722 1 NC_016902.1 KEGG: eoh:ECO103_4940 putative IS621 transposase; PFAM: transposase IS116/IS110/IS902 family protein; SMART: Helix-hairpin-helix DNA-binding class 1; transposase IS116/IS110/IS902 family protein 1114722 11775999 EKO11_1058 Escherichia coli KO11FL transposase IS116/IS110/IS902 family protein YP_005276757.1 1113742 D 595495 CDS YP_005276758.1 378711865 11776000 complement(1114890..1116314) 1 NC_016902.1 PFAM: glycoside hydrolase family 1; KEGG: ssn:SSON_2860 cryptic 6-phospho-beta-glucosidase; glycoside hydrolase 1116314 11776000 EKO11_1059 Escherichia coli KO11FL glycoside hydrolase YP_005276758.1 1114890 R 595495 CDS YP_005276759.1 378711866 11779384 complement(1116323..1117780) 1 NC_016902.1 TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; KEGG: ssn:SSON_2859 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; PTS system maltose and glucose-specific transporter subunit IIC 1117780 11779384 EKO11_1060 Escherichia coli KO11FL PTS system maltose and glucose-specific transporter subunit IIC YP_005276759.1 1116323 R 595495 CDS YP_005276760.1 378711867 11776001 1118037..1119050 1 NC_016902.1 KEGG: eoh:ECO103_3249 DNA-binding transcriptional repressor AscG; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; LacI family transcriptional regulator 1119050 11776001 EKO11_1061 Escherichia coli KO11FL LacI family transcriptional regulator YP_005276760.1 1118037 D 595495 CDS YP_005276761.1 378711868 11776002 1119184..1119726 1 NC_016902.1 manually curated; KEGG: sbc:SbBS512_E3164 electron transport protein HydN; electron transport protein HydN 1119726 11776002 EKO11_1062 Escherichia coli KO11FL electron transport protein HydN YP_005276761.1 1119184 D 595495 CDS YP_005276762.1 378711869 11776003 1119879..1122131 1 NC_016902.1 KEGG: eoh:ECO103_3247 carbamoyl phosphate phosphatase HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; (NiFe) hydrogenase maturation protein HypF 1122131 11776003 EKO11_1063 Escherichia coli KO11FL (NiFe) hydrogenase maturation protein HypF YP_005276762.1 1119879 D 595495 CDS YP_005276763.1 378711870 11776004 complement(1122357..1123490) 1 NC_016902.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ebd:ECBD_1014 nitric oxide reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1123490 11776004 EKO11_1064 Escherichia coli KO11FL FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005276763.1 1122357 R 595495 CDS YP_005276764.1 378711871 11779385 complement(1123487..1124926) 1 NC_016902.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; flavodoxin/nitric oxide synthase; KEGG: eok:G2583_3358 hypothetical protein; rubredoxin-type Fe(Cys)4 protein 1124926 11779385 EKO11_1065 Escherichia coli KO11FL rubredoxin-type Fe(Cys)4 protein YP_005276764.1 1123487 R 595495 CDS YP_005276765.1 378711872 11779386 1125113..1126627 1 NC_016902.1 KEGG: eoi:ECO111_3427 anaerobic nitric oxide reductase transcription regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; SMART: GAF domain protein; AAA ATPase; sigma-54 interacting domain-containing protein 1126627 11779386 EKO11_1066 Escherichia coli KO11FL sigma-54 interacting domain-containing protein YP_005276765.1 1125113 D 595495 CDS YP_005276766.1 378711873 11776005 complement(1126624..1127589) 1 NC_016902.1 TIGRFAM: KpsF/GutQ family protein; KEGG: sbo:SBO_2810 D-arabinose 5-phosphate isomerase; PFAM: sugar isomerase (SIS); CBS domain containing protein; KpsF/GutQ family protein 1127589 11776005 EKO11_1067 Escherichia coli KO11FL KpsF/GutQ family protein YP_005276766.1 1126624 R 595495 CDS YP_005276767.1 378711874 11776006 complement(1127582..1128355) 1 NC_016902.1 KEGG: sfv:SFV_2798 DNA-bindng transcriptional repressor SrlR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 1128355 11776006 EKO11_1068 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005276767.1 1127582 R 595495 CDS YP_005276768.1 378711875 11776007 complement(1128422..1128781) 1 NC_016902.1 PFAM: Glucitol operon activator; KEGG: sbc:SbBS512_E3171 DNA-binding transcriptional activator GutM; glucitol operon activator 1128781 11776007 EKO11_1069 Escherichia coli KO11FL glucitol operon activator YP_005276768.1 1128422 R 595495 CDS YP_005276769.1 378711876 11776008 complement(1128886..1129665) 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdy:SDY_2902 sorbitol-6-phosphate dehydrogenase; short-chain dehydrogenase/reductase SDR 1129665 11776008 EKO11_1070 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005276769.1 1128886 R 595495 CDS YP_005276770.1 378711877 11776009 complement(1129669..1130040) 1 NC_016902.1 KEGG: sfv:SFV_2801 PTS system glucitol/sorbitol-specific transporter subunit IIA; TIGRFAM: PTS system, glucitol/sorbitol-specific IIA subunit; PFAM: PTS system glucitol/sorbitol-specific IIA component; PTS system glucitol/sorbitol-specific transporter subunit IIA 1130040 11776009 EKO11_1071 Escherichia coli KO11FL PTS system glucitol/sorbitol-specific transporter subunit IIA YP_005276770.1 1129669 R 595495 CDS YP_005276771.1 378711878 11776010 complement(1130051..1131010) 1 NC_016902.1 TIGRFAM: PTS system, glucitol/sorbitol-specific, IIBC subunit; KEGG: eoh:ECO103_3238 glucitol/sorbitol-specific enzyme IIB component; PFAM: Sorbitol phosphotransferase protein II domain-containing protein; PTS system glucitol/sorbitol-specific transporter subunit IIBC 1131010 11776010 EKO11_1072 Escherichia coli KO11FL PTS system glucitol/sorbitol-specific transporter subunit IIBC YP_005276771.1 1130051 R 595495 CDS YP_005276772.1 378711879 11776011 complement(1131007..1131570) 1 NC_016902.1 KEGG: sdy:SDY_2898 PTS system, glucitol/sorbitol-specific IIC component; TIGRFAM: PTS system, glucitol/sorbitol-specific, IIC subunit; PFAM: PTS system protein II sorbitol-specific factor; PTS system glucitol/sorbitol-specific transporter subunit IIC 1131570 11776011 EKO11_1073 Escherichia coli KO11FL PTS system glucitol/sorbitol-specific transporter subunit IIC YP_005276772.1 1131007 R 595495 CDS YP_005276773.1 378711880 11776012 1131721..1132911 1 NC_016902.1 TIGRFAM: lytic murein transglycosylase B; KEGG: sfv:SFV_2804 murein hydrolase B; lytic murein transglycosylase B 1132911 11776012 EKO11_1074 Escherichia coli KO11FL lytic murein transglycosylase B YP_005276773.1 1131721 D 595495 CDS YP_005276774.1 378711881 11776013 1133056..1133553 1 NC_016902.1 PFAM: CinA domain protein; KEGG: sbo:SBO_2818 competence damage-inducible protein A; CinA domain-containing protein 1133553 11776013 EKO11_1075 Escherichia coli KO11FL CinA domain-containing protein YP_005276774.1 1133056 D 595495 CDS YP_005276775.1 378711882 11779387 1133633..1134694 1 NC_016902.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: sdy:SDY_2895 recombinase A; SMART: AAA ATPase; recA protein 1134694 11779387 EKO11_1076 Escherichia coli KO11FL recA protein YP_005276775.1 1133633 D 595495 CDS YP_005276776.1 378711883 11776014 1134937..1135437 1 NC_016902.1 PFAM: regulatory protein RecX; KEGG: sfv:SFV_2807 recombination regulator RecX; regulatory protein RecX 1135437 11776014 EKO11_1077 Escherichia coli KO11FL regulatory protein RecX YP_005276776.1 1134937 D 595495 CDS YP_005276777.1 378711884 11776015 1135565..1138195 1 NC_016902.1 KEGG: ssn:SSON_2841 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; alanyl-tRNA synthetase 1138195 11776015 EKO11_1078 Escherichia coli KO11FL alanyl-tRNA synthetase YP_005276777.1 1135565 D 595495 CDS YP_005276778.1 378711885 11776016 1138430..1138615 1 NC_016902.1 KEGG: cro:ROD_31181 carbon storage regulator; TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; carbon storage regulator CsrA 1138615 11776016 EKO11_1079 Escherichia coli KO11FL carbon storage regulator CsrA YP_005276778.1 1138430 D 595495 CDS YP_005276779.1 378711886 11779388 1140073..1140639 1 NC_016902.1 KEGG: eok:G2583_3338 HAD-superfamily hydrolase, subfamily IA; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; beta-phosphoglucomutase family hydrolase 1140639 11779388 EKO11_1080 Escherichia coli KO11FL beta-phosphoglucomutase family hydrolase YP_005276779.1 1140073 D 595495 CDS YP_005276780.1 378711887 11776022 1140636..1141064 1 NC_016902.1 KEGG: sbo:SBO_2828 hypothetical protein; hypothetical protein 1141064 11776022 EKO11_1081 Escherichia coli KO11FL hypothetical protein YP_005276780.1 1140636 D 595495 CDS YP_005276781.1 378711888 11776023 1141137..1142693 1 NC_016902.1 KEGG: sfv:SFV_2816 glutamate--cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase; glutamate/cysteine ligase 1142693 11776023 EKO11_1082 Escherichia coli KO11FL glutamate/cysteine ligase YP_005276781.1 1141137 D 595495 CDS YP_005276782.1 378711889 11776024 1142843..1143358 1 NC_016902.1 KEGG: sdy:SDY_2884 S-ribosylhomocysteinase; PFAM: LuxS protein; quorum-sensing autoinducer 2 (AI-2), LuxS 1143358 11776024 EKO11_1083 Escherichia coli KO11FL quorum-sensing autoinducer 2 (AI-2), LuxS YP_005276782.1 1142843 D 595495 CDS YP_005276783.1 378711890 11776025 complement(1143407..1144519) 1 NC_016902.1 KEGG: efe:EFER_0383 putative RNA related enzyme; putative RNA related enzyme 1144519 11776025 EKO11_1084 Escherichia coli KO11FL putative RNA related enzyme YP_005276783.1 1143407 R 595495 CDS YP_005276784.1 378711891 11776026 complement(1144516..1145223) 1 NC_016902.1 KEGG: sdy:SDY_2882 hypothetical protein; hypothetical protein 1145223 11776026 EKO11_1085 Escherichia coli KO11FL hypothetical protein YP_005276784.1 1144516 R 595495 CDS YP_005276785.1 378711892 11776027 complement(1145481..1147019) 1 NC_016902.1 KEGG: ebd:ECBD_1034 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter 1147019 11776027 EKO11_1086 Escherichia coli KO11FL EmrB/QacA subfamily drug resistance transporter YP_005276785.1 1145481 R 595495 CDS YP_005276786.1 378711893 11776028 complement(1147036..1148208) 1 NC_016902.1 KEGG: sbo:SBO_2832 multidrug resistance secretion protein; TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; efflux pump membrane protein 1148208 11776028 EKO11_1087 Escherichia coli KO11FL efflux pump membrane protein YP_005276786.1 1147036 R 595495 CDS YP_005276787.1 378711894 11776029 complement(1148335..1148865) 1 NC_016902.1 KEGG: sbc:SbBS512_E3192 transcriptional repressor MprA; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; regulatory protein MarR 1148865 11776029 EKO11_1088 Escherichia coli KO11FL regulatory protein MarR YP_005276787.1 1148335 R 595495 CDS YP_005276788.1 378711895 11776030 complement(1148956..1149291) 1 NC_016902.1 KEGG: sbc:SbBS512_E3193 hypothetical protein; hypothetical protein 1149291 11776030 EKO11_1089 Escherichia coli KO11FL hypothetical protein YP_005276788.1 1148956 R 595495 CDS YP_005276789.1 378711896 11779389 complement(1149281..1150018) 1 NC_016902.1 PFAM: AzlC family protein; KEGG: ssn:SSON_2826 hypothetical protein; AzlC family protein 1150018 11779389 EKO11_1090 Escherichia coli KO11FL AzlC family protein YP_005276789.1 1149281 R 595495 CDS YP_005276790.1 378711897 11779390 complement(1150142..1151326) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoi:ECO111_3404 putative transporter; major facilitator superfamily protein 1151326 11779390 EKO11_1091 Escherichia coli KO11FL major facilitator superfamily protein YP_005276790.1 1150142 R 595495 CDS YP_005276791.1 378711898 11776031 complement(1151618..1152610) 1 NC_016902.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ebd:ECBD_1040 glycine betaine transporter periplasmic subunit; glycine betaine ABC transporter substrate-binding protein 1152610 11776031 EKO11_1092 Escherichia coli KO11FL glycine betaine ABC transporter substrate-binding protein YP_005276791.1 1151618 R 595495 CDS YP_005276792.1 378711899 11776032 complement(1152668..1153732) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E3201 glycine betaine transporter membrane protein; binding-protein-dependent transport system inner membrane protein 1153732 11776032 EKO11_1093 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005276792.1 1152668 R 595495 CDS YP_005276793.1 378711900 11776033 complement(1153725..1154927) 1 NC_016902.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: sbc:SbBS512_E3202 glycine betaine transporter ATP-binding subunit; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 1154927 11776033 EKO11_1094 Escherichia coli KO11FL glycine betaine/L-proline ABC transporter ATPase YP_005276793.1 1153725 R 595495 CDS YP_005276794.1 378711901 11776034 complement(1155282..1156241) 1 NC_016902.1 KEGG: ssn:SSON_2821 ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase; ribonucleoside-diphosphate reductase 1156241 11776034 EKO11_1095 Escherichia coli KO11FL ribonucleoside-diphosphate reductase YP_005276794.1 1155282 R 595495 CDS YP_005276795.1 378711902 11776035 complement(1156251..1158395) 1 NC_016902.1 KEGG: eoh:ECO103_3216 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase domain protein; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase subunit alpha 1158395 11776035 EKO11_1096 Escherichia coli KO11FL ribonucleoside-diphosphate reductase subunit alpha YP_005276795.1 1156251 R 595495 CDS YP_005276796.1 378711903 11776036 complement(1158368..1158778) 1 NC_016902.1 KEGG: sbc:SbBS512_E3205 ribonucleotide reductase stimulatory protein; TIGRFAM: NrdI protein; PFAM: NrdI family protein; NrdI protein 1158778 11776036 EKO11_1097 Escherichia coli KO11FL NrdI protein YP_005276796.1 1158368 R 595495 CDS YP_005276797.1 378711904 11779391 complement(1158775..1159020) 1 NC_016902.1 KEGG: sbo:SBO_2844 glutaredoxin-like protein; TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; glutaredoxin-like protein NrdH 1159020 11779391 EKO11_1098 Escherichia coli KO11FL glutaredoxin-like protein NrdH YP_005276797.1 1158775 R 595495 CDS YP_005276798.1 378711905 11779392 complement(1159268..1159597) 1 NC_016902.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_2863 hypothetical protein; hypothetical protein 1159597 11779392 EKO11_1099 Escherichia coli KO11FL hypothetical protein YP_005276798.1 1159268 R 595495 CDS YP_005276799.1 378711906 11776037 1159749..1160093 1 NC_016902.1 PFAM: Protein of unknown function DUF2002; KEGG: sbc:SbBS512_E3210 hypothetical protein; hypothetical protein 1160093 11776037 EKO11_1100 Escherichia coli KO11FL hypothetical protein YP_005276799.1 1159749 D 595495 CDS YP_005276800.1 378711907 11776038 complement(1160130..1160579) 1 NC_016902.1 PFAM: protein of unknown function DUF1144; KEGG: sbc:SbBS512_E3211 hypothetical protein; hypothetical protein 1160579 11776038 EKO11_1101 Escherichia coli KO11FL hypothetical protein YP_005276800.1 1160130 R 595495 CDS YP_005276801.1 378711908 11776039 1161247..1161651 1 NC_016902.1 KEGG: sdy:SDY_2859 DNA binding protein, nucleoid-associated; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 1161651 11776039 EKO11_1102 Escherichia coli KO11FL histone family protein nucleoid-structuring protein H-NS YP_005276801.1 1161247 D 595495 CDS YP_005276802.1 378711909 11776040 complement(1161698..1162222) 1 NC_016902.1 SMART: Rhodanese domain protein; KEGG: ebw:BWG_2411 putative inner membrane protein with hydrolase activity; Rhodanese domain-containing protein 1162222 11776040 EKO11_1103 Escherichia coli KO11FL Rhodanese domain-containing protein YP_005276802.1 1161698 R 595495 CDS YP_005276803.1 378711910 11776041 complement(1162232..1162531) 1 NC_016902.1 KEGG: sbo:SBO_2852 hypothetical protein; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 1162531 11776041 EKO11_1104 Escherichia coli KO11FL ArsR family transcriptional regulator YP_005276803.1 1162232 R 595495 CDS YP_005276804.1 378711911 11776042 1162714..1162872 1 NC_016902.1 PFAM: protein of unknown function UPF0057; KEGG: sdy:SDY_2856 hypothetical protein; hypothetical protein 1162872 11776042 EKO11_1105 Escherichia coli KO11FL hypothetical protein YP_005276804.1 1162714 D 595495 CDS YP_005276805.1 378711912 11776043 1162956..1163405 1 NC_016902.1 KEGG: sdy:SDY_2855 LysM domain/BON superfamily protein; PFAM: Peptidoglycan-binding lysin domain; transport-associated; SMART: Peptidoglycan-binding LysM; Transport-associated and nodulation region; peptidoglycan-binding lysin domain-containing protein 1163405 11776043 EKO11_1106 Escherichia coli KO11FL peptidoglycan-binding lysin domain-containing protein YP_005276805.1 1162956 D 595495 CDS YP_005276806.1 378711913 11776044 complement(1163406..1164068) 1 NC_016902.1 KEGG: sdy:SDY_2854 DNA-binding transcriptional regulator CsiR; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 1164068 11776044 EKO11_1107 Escherichia coli KO11FL GntR family transcriptional regulator YP_005276806.1 1163406 R 595495 CDS YP_005276807.1 378711914 11776045 complement(1164089..1165489) 1 NC_016902.1 KEGG: eoh:ECO103_3204 gamma-aminobutyrate transporter; TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; GABA permease 1165489 11776045 EKO11_1108 Escherichia coli KO11FL GABA permease YP_005276807.1 1164089 R 595495 CDS YP_005276808.1 378711915 11776046 complement(1165726..1167006) 1 NC_016902.1 KEGG: ebd:ECBD_1057 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; 4-aminobutyrate aminotransferase 1167006 11776046 EKO11_1109 Escherichia coli KO11FL 4-aminobutyrate aminotransferase YP_005276808.1 1165726 R 595495 CDS YP_005276809.1 378711916 11776047 complement(1167020..1168468) 1 NC_016902.1 KEGG: eok:G2583_3307 succinate-semialdehyde dehydrogenase (NAD(P)(+)); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; succinate-semialdehyde dehydrogenase 1168468 11776047 EKO11_1110 Escherichia coli KO11FL succinate-semialdehyde dehydrogenase YP_005276809.1 1167020 R 595495 CDS YP_005276810.1 378711917 11776048 complement(1168491..1169759) 1 NC_016902.1 PFAM: FAD dependent oxidoreductase; KEGG: ebd:ECBD_1059 hydroxyglutarate oxidase; FAD dependent oxidoreductase 1169759 11776048 EKO11_1111 Escherichia coli KO11FL FAD dependent oxidoreductase YP_005276810.1 1168491 R 595495 CDS YP_005276811.1 378711918 11776049 complement(1169779..1170756) 1 NC_016902.1 PFAM: protein of unknown function CsiD; KEGG: ssn:SSON_2803 hypothetical protein; hypothetical protein 1170756 11776049 EKO11_1112 Escherichia coli KO11FL hypothetical protein YP_005276811.1 1169779 R 595495 CDS YP_005276812.1 378711919 11776050 complement(1171092..1172135) 1 NC_016902.1 KEGG: ssn:SSON_2802 putative enzyme; manually curated; PFAM: alpha amylase all-beta; alpha amylase 1172135 11776050 EKO11_1113 Escherichia coli KO11FL alpha amylase YP_005276812.1 1171092 R 595495 CDS YP_005276813.1 378711920 11776051 1172265..1172564 1 NC_016902.1 PFAM: transposase IS3/IS911 family protein; KEGG: cro:ROD_49861 IS3 transposase A; transposase IS3/IS911 family protein 1172564 11776051 EKO11_1114 Escherichia coli KO11FL transposase IS3/IS911 family protein YP_005276813.1 1172265 D 595495 CDS YP_005276814.1 378711921 11776052 1172561..1173427 1 NC_016902.1 PFAM: Integrase catalytic region; KEGG: cro:ROD_49871 IS3 transposase B; integrase catalytic subunit 1173427 11776052 EKO11_1115 Escherichia coli KO11FL integrase catalytic subunit YP_005276814.1 1172561 D 595495 CDS YP_005276815.1 378711922 11776053 1173579..1175297 1 NC_016902.1 KEGG: eoi:ECO111_3380 putative histidine kinase-like protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; ATP-binding region ATPase domain-containing protein 1175297 11776053 EKO11_1116 Escherichia coli KO11FL ATP-binding region ATPase domain-containing protein YP_005276815.1 1173579 D 595495 CDS YP_005276816.1 378711923 11776054 1175299..1177047 1 NC_016902.1 KEGG: eoi:ECO111_3379 hypothetical protein; hypothetical protein 1177047 11776054 EKO11_1117 Escherichia coli KO11FL hypothetical protein YP_005276816.1 1175299 D 595495 CDS YP_005276817.1 378711924 11779393 complement(1177119..1177535) 1 NC_016902.1 KEGG: eoh:ECO103_3196 hypothetical protein; hypothetical protein 1177535 11779393 EKO11_1118 Escherichia coli KO11FL hypothetical protein YP_005276817.1 1177119 R 595495 CDS YP_005276818.1 378711925 11776055 complement(1177574..1178803) 1 NC_016902.1 PFAM: integrase family protein; KEGG: eoh:ECO103_3195 putative integrase; integrase family protein 1178803 11776055 EKO11_1119 Escherichia coli KO11FL integrase family protein YP_005276818.1 1177574 R 595495 CDS YP_005276819.1 378711926 11776057 complement(1179546..1180028) 1 NC_016902.1 KEGG: sdy:SDY_2793 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; SsrA-binding protein 1180028 11776057 EKO11_1120 Escherichia coli KO11FL SsrA-binding protein YP_005276819.1 1179546 R 595495 CDS YP_005276820.1 378711927 11776058 1180187..1180636 1 NC_016902.1 PFAM: cyclase/dehydrase; KEGG: sdy:SDY_2792 hypothetical protein; cyclase/dehydrase 1180636 11776058 EKO11_1121 Escherichia coli KO11FL cyclase/dehydrase YP_005276820.1 1180187 D 595495 CDS YP_005276821.1 378711928 11776059 1180626..1180916 1 NC_016902.1 PFAM: protein of unknown function UPF0125; KEGG: sbc:SbBS512_E3007 hypothetical protein; hypothetical protein 1180916 11776059 EKO11_1122 Escherichia coli KO11FL hypothetical protein YP_005276821.1 1180626 D 595495 CDS YP_005276822.1 378711929 11776060 complement(1180978..1181319) 1 NC_016902.1 PFAM: SmpA/OmlA domain-containing protein; KEGG: sdy:SDY_2790 hypothetical protein; SmpA/OmlA domain-containing protein 1181319 11776060 EKO11_1123 Escherichia coli KO11FL SmpA/OmlA domain-containing protein YP_005276822.1 1180978 R 595495 CDS YP_005276823.1 378711930 11776061 complement(1181468..1183129) 1 NC_016902.1 KEGG: ssn:SSON_2772 recombination and repair protein; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; DNA repair protein RecN 1183129 11776061 EKO11_1124 Escherichia coli KO11FL DNA repair protein RecN YP_005276823.1 1181468 R 595495 CDS YP_005276824.1 378711931 11776062 complement(1183215..1184093) 1 NC_016902.1 PFAM: ATP-NAD/AcoX kinase; KEGG: sbc:SbBS512_E3004 inorganic polyphosphate/ATP-NAD kinase; ATP-NAD/AcoX kinase 1184093 11776062 EKO11_1125 Escherichia coli KO11FL ATP-NAD/AcoX kinase YP_005276824.1 1183215 R 595495 CDS YP_005276825.1 378711932 11776063 1184216..1184809 1 NC_016902.1 PFAM: GrpE protein; KEGG: sdy:SDY_2787 heat shock protein GrpE; GrpE protein HSP-70 cofactor 1184809 11776063 EKO11_1126 Escherichia coli KO11FL GrpE protein HSP-70 cofactor YP_005276825.1 1184216 D 595495 CDS YP_005276826.1 378711933 11776064 complement(1184864..1186105) 1 NC_016902.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: sbc:SbBS512_E3001 hypothetical protein; hypothetical protein 1186105 11776064 EKO11_1127 Escherichia coli KO11FL hypothetical protein YP_005276826.1 1184864 R 595495 CDS YP_005276827.1 378711934 11776065 complement(1186171..1187037) 1 NC_016902.1 PFAM: cytochrome c assembly protein; KEGG: sdy:SDY_2785 hypothetical protein; cytochrome c assembly protein 1187037 11776065 EKO11_1128 Escherichia coli KO11FL cytochrome c assembly protein YP_005276827.1 1186171 R 595495 CDS YP_005276828.1 378711935 11776066 1187129..1188490 1 NC_016902.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; KEGG: sbc:SbBS512_E2999 signal recognition particle protein; SMART: AAA ATPase; signal recognition particle protein 1188490 11776066 EKO11_1129 Escherichia coli KO11FL signal recognition particle protein YP_005276828.1 1187129 D 595495 CDS YP_005276829.1 378711936 11776067 1188739..1188987 1 NC_016902.1 KEGG: sdy:SDY_2783 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; 30S ribosomal protein S16 1188987 11776067 EKO11_1130 Escherichia coli KO11FL 30S ribosomal protein S16 YP_005276829.1 1188739 D 595495 CDS YP_005276830.1 378711937 11776068 1189006..1189554 1 NC_016902.1 KEGG: sdy:SDY_2782 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; 16S rRNA processing protein RimM 1189554 11776068 EKO11_1131 Escherichia coli KO11FL 16S rRNA processing protein RimM YP_005276830.1 1189006 D 595495 CDS YP_005276831.1 378711938 11776069 1189585..1190352 1 NC_016902.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: sdy:SDY_2781 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 1190352 11776069 EKO11_1132 Escherichia coli KO11FL tRNA (guanine-N1)-methyltransferase YP_005276831.1 1189585 D 595495 CDS YP_005276832.1 378711939 11776070 1190394..1190741 1 NC_016902.1 KEGG: sdy:SDY_2780 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; 50S ribosomal protein L19 1190741 11776070 EKO11_1133 Escherichia coli KO11FL 50S ribosomal protein L19 YP_005276832.1 1190394 D 595495 CDS YP_005276833.1 378711940 11776071 complement(1190818..1191300) 1 NC_016902.1 PFAM: OmpA/MotB domain protein; KEGG: ebd:ECBD_1081 putative outer membrane lipoprotein; OmpA/MotB domain-containing protein 1191300 11776071 EKO11_1134 Escherichia coli KO11FL OmpA/MotB domain-containing protein YP_005276833.1 1190818 R 595495 CDS YP_005276834.1 378711941 11776072 complement(1191316..1192542) 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eoh:ECO103_3178 hypothetical protein; SMART: GGDEF domain containing protein; diguanylate cyclase 1192542 11776072 EKO11_1135 Escherichia coli KO11FL diguanylate cyclase YP_005276834.1 1191316 R 595495 CDS YP_005276835.1 378711942 11776073 complement(1192532..1193050) 1 NC_016902.1 KEGG: sbc:SbBS512_E2990 hypothetical protein; hypothetical protein 1193050 11776073 EKO11_1136 Escherichia coli KO11FL hypothetical protein YP_005276835.1 1192532 R 595495 CDS YP_005276836.1 378711943 11776074 complement(1193200..1193562) 1 NC_016902.1 KEGG: ebd:ECBD_1084 hypothetical protein; hypothetical protein 1193562 11776074 EKO11_1137 Escherichia coli KO11FL hypothetical protein YP_005276836.1 1193200 R 595495 CDS YP_005276837.1 378711944 11776075 1193775..1194845 1 NC_016902.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: eoh:ECO103_3175 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 1194845 11776075 EKO11_1138 Escherichia coli KO11FL phospho-2-dehydro-3-deoxyheptonate aldolase YP_005276837.1 1193775 D 595495 CDS YP_005276838.1 378711945 11779394 1194856..1195977 1 NC_016902.1 KEGG: sbc:SbBS512_E2987 bifunctional chorismate mutase/prephenate dehydrogenase; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase, type II; Prephenate dehydrogenase; chorismate mutase 1195977 11779394 EKO11_1139 Escherichia coli KO11FL chorismate mutase YP_005276838.1 1194856 D 595495 CDS YP_005276839.1 378711946 11779395 complement(1196020..1197180) 1 NC_016902.1 KEGG: sbc:SbBS512_E2986 bifunctional chorismate mutase/prephenate dehydratase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; chorismate mutase 1197180 11779395 EKO11_1140 Escherichia coli KO11FL chorismate mutase YP_005276839.1 1196020 R 595495 CDS YP_005276840.1 378711947 11776076 complement(1197430..1197771) 1 NC_016902.1 KEGG: sdy:SDY_2768 translation inhibitor protein RaiA; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 1197771 11776076 EKO11_1141 Escherichia coli KO11FL sigma 54 modulation protein/ribosomal protein S30EA YP_005276840.1 1197430 R 595495 CDS YP_005276841.1 378711948 11776077 complement(1198042..1198779) 1 NC_016902.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: sbc:SbBS512_E2976 outer membrane protein assembly complex subunit YfiO; outer membrane assembly lipoprotein YfiO 1198779 11776077 EKO11_1142 Escherichia coli KO11FL outer membrane assembly lipoprotein YfiO YP_005276841.1 1198042 R 595495 CDS YP_005276842.1 378711949 11776078 1198914..1199894 1 NC_016902.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: eoh:ECO103_3169 23S rRNA pseudouridine synthase D; SMART: RNA-binding S4 domain protein; RluA family pseudouridine synthase 1199894 11776078 EKO11_1143 Escherichia coli KO11FL RluA family pseudouridine synthase YP_005276842.1 1198914 D 595495 CDS YP_005276843.1 378711950 11776079 1199891..1200622 1 NC_016902.1 PFAM: protein of unknown function DUF152; KEGG: eoh:ECO103_3168 hypothetical protein; hypothetical protein 1200622 11776079 EKO11_1144 Escherichia coli KO11FL hypothetical protein YP_005276843.1 1199891 D 595495 CDS YP_005276844.1 378711951 11776080 1200752..1203325 1 NC_016902.1 TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: sbo:SBO_2627 protein disaggregation chaperone; SMART: AAA ATPase; ATP-dependent chaperone ClpB 1203325 11776080 EKO11_1145 Escherichia coli KO11FL ATP-dependent chaperone ClpB YP_005276844.1 1200752 D 595495 CDS YP_005276845.1 378711952 11776085 1209189..1210487 1 NC_016902.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); KEGG: sdy:SDY_2830 alpha-ketoglutarate transporter; metabolite/H+ symporter, major facilitator superfamily (MFS) 1210487 11776085 EKO11_1146 Escherichia coli KO11FL metabolite/H+ symporter, major facilitator superfamily (MFS) YP_005276845.1 1209189 D 595495 CDS YP_005276846.1 378711953 11779396 complement(1210484..1210807) 1 NC_016902.1 KEGG: sbc:SbBS512_E2949 hypothetical protein; hypothetical protein 1210807 11779396 EKO11_1147 Escherichia coli KO11FL hypothetical protein YP_005276846.1 1210484 R 595495 CDS YP_005276847.1 378711954 11779397 complement(1210853..1212208) 1 NC_016902.1 KEGG: efe:EFER_0488 phosphatidylserine synthase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; phospholipase D/Transphosphatidylase 1212208 11779397 EKO11_1148 Escherichia coli KO11FL phospholipase D/Transphosphatidylase YP_005276847.1 1210853 R 595495 CDS YP_005276848.1 378711955 11776086 complement(1212322..1214982) 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: eoh:ECO103_3163 fused putative acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit; N-acetyltransferase GCN5 1214982 11776086 EKO11_1149 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005276848.1 1212322 R 595495 CDS YP_005276849.1 378711956 11776087 complement(1215014..1215712) 1 NC_016902.1 PFAM: DTW domain containing protein; KEGG: sdy:SDY_2826 hypothetical protein; DTW domain containing protein 1215712 11776087 EKO11_1150 Escherichia coli KO11FL DTW domain containing protein YP_005276849.1 1215014 R 595495 CDS YP_005276850.1 378711957 11776088 complement(1215781..1216200) 1 NC_016902.1 KEGG: sdy:SDY_2825 thioredoxin 2; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; thioredoxin 1216200 11776088 EKO11_1151 Escherichia coli KO11FL thioredoxin YP_005276850.1 1215781 R 595495 CDS YP_005276851.1 378711958 11776089 1216407..1217444 1 NC_016902.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: sdy:SDY_2824 putative methyltransferase; tRNA/rRNA methyltransferase SpoU 1217444 11776089 EKO11_1152 Escherichia coli KO11FL tRNA/rRNA methyltransferase SpoU YP_005276851.1 1216407 D 595495 CDS YP_005276852.1 378711959 11776090 complement(1217492..1218181) 1 NC_016902.1 KEGG: sdy:SDY_2823 uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; uracil-DNA glycosylase 1218181 11776090 EKO11_1153 Escherichia coli KO11FL uracil-DNA glycosylase YP_005276852.1 1217492 R 595495 CDS YP_005276853.1 378711960 11776091 1218486..1218869 1 NC_016902.1 PFAM: formate C-acetyltransferase glycine radical; KEGG: sbc:SbBS512_E2957 autonomous glycyl radical cofactor GrcA; formate C-acetyltransferase glycine radical 1218869 11776091 EKO11_1154 Escherichia coli KO11FL formate C-acetyltransferase glycine radical YP_005276853.1 1218486 D 595495 CDS YP_005276854.1 378711961 11776092 complement(1218924..1219511) 1 NC_016902.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sbc:SbBS512_E2958 neutral amino-acid efflux protein; lysine exporter protein LysE/YggA 1219511 11776092 EKO11_1155 Escherichia coli KO11FL lysine exporter protein LysE/YggA YP_005276854.1 1218924 R 595495 CDS YP_005276855.1 378711962 11776093 1219614..1220495 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eoh:ECO103_3156 putative DNA-binding transcriptional regulator, LysR-type; LysR family transcriptional regulator 1220495 11776093 EKO11_1156 Escherichia coli KO11FL LysR family transcriptional regulator YP_005276855.1 1219614 D 595495 CDS YP_005276856.1 378711963 11776094 complement(1220528..1221862) 1 NC_016902.1 KEGG: ssn:SSON_2702 ATP-dependent RNA helicase SrmB; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 1221862 11776094 EKO11_1157 Escherichia coli KO11FL DEAD/DEAH box helicase YP_005276856.1 1220528 R 595495 CDS YP_005276857.1 378711964 11776095 1221994..1222731 1 NC_016902.1 PFAM: methyltransferase small; KEGG: sfv:SFV_2638 putative enzyme; methyltransferase small 1222731 11776095 EKO11_1158 Escherichia coli KO11FL methyltransferase small YP_005276857.1 1221994 D 595495 CDS YP_005276858.1 378711965 11776096 complement(1222716..1224338) 1 NC_016902.1 KEGG: eoh:ECO103_3152 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; L-aspartate oxidase 1224338 11776096 EKO11_1159 Escherichia coli KO11FL L-aspartate oxidase YP_005276858.1 1222716 R 595495 CDS YP_005276859.1 378711966 11776097 1224746..1225321 1 NC_016902.1 KEGG: sdy:SDY_2814 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 1225321 11776097 EKO11_1160 Escherichia coli KO11FL ECF subfamily RNA polymerase sigma-24 subunit YP_005276859.1 1224746 D 595495 CDS YP_005276860.1 378711967 11779398 1225354..1226004 1 NC_016902.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: sdy:SDY_2813 anti-RNA polymerase sigma factor SigE; anti sigma-E protein, RseA 1226004 11779398 EKO11_1161 Escherichia coli KO11FL anti sigma-E protein, RseA YP_005276860.1 1225354 D 595495 CDS YP_005276861.1 378711968 11776098 1226004..1226960 1 NC_016902.1 PFAM: MucB/RseB family protein; KEGG: sdy:SDY_2812 periplasmic negative regulator of sigmaE; sigma E regulatory protein MucB/RseB 1226960 11776098 EKO11_1162 Escherichia coli KO11FL sigma E regulatory protein MucB/RseB YP_005276861.1 1226004 D 595495 CDS YP_005276862.1 378711969 11776099 1226957..1227436 1 NC_016902.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: sbc:SbBS512_E2935 SoxR reducing system protein RseC; sigma E positive regulator RseC/MucC 1227436 11776099 EKO11_1163 Escherichia coli KO11FL sigma E positive regulator RseC/MucC YP_005276862.1 1226957 D 595495 CDS YP_005276863.1 378711970 11776100 1227634..1229433 1 NC_016902.1 KEGG: sbc:SbBS512_E2934 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein LepA 1229433 11776100 EKO11_1164 Escherichia coli KO11FL GTP-binding protein LepA YP_005276863.1 1227634 D 595495 CDS YP_005276864.1 378711971 11776101 1229449..1230423 1 NC_016902.1 KEGG: sbc:SbBS512_E2933 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region; signal peptidase I 1230423 11776101 EKO11_1165 Escherichia coli KO11FL signal peptidase I YP_005276864.1 1229449 D 595495 CDS YP_005276865.1 378711972 11776102 1230695..1231375 1 NC_016902.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: sdy:SDY_2808 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III 1231375 11776102 EKO11_1166 Escherichia coli KO11FL ribonuclease III YP_005276865.1 1230695 D 595495 CDS YP_005276866.1 378711973 11776103 1231372..1232277 1 NC_016902.1 KEGG: sbc:SbBS512_E2931 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; GTP-binding protein Era 1232277 11776103 EKO11_1167 Escherichia coli KO11FL GTP-binding protein Era YP_005276866.1 1231372 D 595495 CDS YP_005276867.1 378711974 11776104 1232289..1233017 1 NC_016902.1 KEGG: ssn:SSON_2689 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; DNA repair protein RecO 1233017 11776104 EKO11_1168 Escherichia coli KO11FL DNA repair protein RecO YP_005276867.1 1232289 D 595495 CDS YP_005276868.1 378711975 11776105 1233029..1233760 1 NC_016902.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: efe:EFER_0510 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein PdxJ 1233760 11776105 EKO11_1169 Escherichia coli KO11FL pyridoxal phosphate biosynthetic protein PdxJ YP_005276868.1 1233029 D 595495 CDS YP_005276869.1 378711976 11776106 1233760..1234140 1 NC_016902.1 KEGG: sbc:SbBS512_E2928 4'-phosphopantetheinyl transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-(acyl-carrier-protein) synthase 1234140 11776106 EKO11_1170 Escherichia coli KO11FL holo-(acyl-carrier-protein) synthase YP_005276869.1 1233760 D 595495 CDS YP_005276870.1 378711977 11776107 complement(1234835..1235095) 1 NC_016902.1 KEGG: sbc:SbBS512_E2927 4Fe-4S binding domain protein; 4Fe-4S binding protein 1235095 11776107 EKO11_1171 Escherichia coli KO11FL 4Fe-4S binding protein YP_005276870.1 1234835 R 595495 CDS YP_005276871.1 378711978 11776108 complement(1235151..1235999) 1 NC_016902.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sbc:SbBS512_E2926 putative DNA-binding transcriptional regulator; RpiR family transcriptional regulator 1235999 11776108 EKO11_1172 Escherichia coli KO11FL RpiR family transcriptional regulator YP_005276871.1 1235151 R 595495 CDS YP_005276872.1 378711979 11779399 1236208..1236843 1 NC_016902.1 TIGRFAM: HAD superfamily (subfamily IF) hydrolase, YfhB; KEGG: sbc:SbBS512_E2925 hypothetical protein; HAD superfamily hydrolase 1236843 11779399 EKO11_1173 Escherichia coli KO11FL HAD superfamily hydrolase YP_005276872.1 1236208 D 595495 CDS YP_005276873.1 378711980 11776109 1236901..1237404 1 NC_016902.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sbc:SbBS512_E2923 tRNA-specific adenosine deaminase; CMP/dCMP deaminase zinc-binding protein 1237404 11776109 EKO11_1174 Escherichia coli KO11FL CMP/dCMP deaminase zinc-binding protein YP_005276873.1 1236901 D 595495 CDS YP_005276874.1 378711981 11779400 complement(1237401..1238957) 1 NC_016902.1 KEGG: eok:G2583_3089 putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; lytic transglycosylase 1238957 11779400 EKO11_1175 Escherichia coli KO11FL lytic transglycosylase YP_005276874.1 1237401 R 595495 CDS YP_005276875.1 378711982 11779401 1239215..1243102 1 NC_016902.1 TIGRFAM: phosphoribosylformylglycinamidine synthase; KEGG: sbc:SbBS512_E2922 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine synthase 1243102 11779401 EKO11_1176 Escherichia coli KO11FL phosphoribosylformylglycinamidine synthase YP_005276875.1 1239215 D 595495 CDS YP_005276876.1 378711983 11776110 1243615..1245105 1 NC_016902.1 manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sdy:SDY_2746 putative 2-component sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 1245105 11776110 EKO11_1177 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005276876.1 1243615 D 595495 CDS YP_005276877.1 378711984 11776111 1245270..1245983 1 NC_016902.1 KEGG: eoi:ECO111_3281 hypothetical protein; hypothetical protein 1245983 11776111 EKO11_1178 Escherichia coli KO11FL hypothetical protein YP_005276877.1 1245270 D 595495 CDS YP_005276878.1 378711985 11776112 1245973..1247307 1 NC_016902.1 KEGG: eoh:ECO103_3075 putative DNA-binding response regulator in two-component system; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; putative two component sigma-54 specific transcriptional regulator 1247307 11776112 EKO11_1179 Escherichia coli KO11FL putative two component sigma-54 specific transcriptional regulator YP_005276878.1 1245973 D 595495 CDS YP_005276879.1 378711986 11776113 1247368..1247706 1 NC_016902.1 PFAM: nitrogen regulatory protein P-II; KEGG: sdy:SDY_2743 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 1247706 11776113 EKO11_1180 Escherichia coli KO11FL nitrogen regulatory protein P-II YP_005276879.1 1247368 D 595495 CDS YP_005276880.1 378711987 11776114 complement(1247751..1248941) 1 NC_016902.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; globin; Oxidoreductase FAD-binding domain protein; KEGG: eoh:ECO103_3073 nitric oxide dioxygenase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1248941 11776114 EKO11_1181 Escherichia coli KO11FL oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_005276880.1 1247751 R 595495 CDS YP_005276881.1 378711988 11776115 1249269..1250522 1 NC_016902.1 KEGG: sbc:SbBS512_E2916 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; glycine hydroxymethyltransferase 1250522 11776115 EKO11_1182 Escherichia coli KO11FL glycine hydroxymethyltransferase YP_005276881.1 1249269 D 595495 CDS YP_005276882.1 378711989 11776116 complement(1250586..1251779) 1 NC_016902.1 PFAM: ROK family protein; KEGG: sbo:SBO_2578 putative NAGC-like transcriptional regulator; ROK family protein 1251779 11776116 EKO11_1183 Escherichia coli KO11FL ROK family protein YP_005276882.1 1250586 R 595495 CDS YP_005276883.1 378711990 11776117 1251897..1255178 1 NC_016902.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: ebd:ECBD_1135 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1255178 11776117 EKO11_1184 Escherichia coli KO11FL hypothetical protein YP_005276883.1 1251897 D 595495 CDS YP_005276884.1 378711991 11776118 1255275..1256258 1 NC_016902.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sfv:SFV_2596 putative LacI-type transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1256258 11776118 EKO11_1185 Escherichia coli KO11FL periplasmic binding protein/LacI transcriptional regulator YP_005276884.1 1255275 D 595495 CDS YP_005276885.1 378711992 11776119 1256281..1257792 1 NC_016902.1 KEGG: eoj:ECO26_3594 fused putative sugar transporter subunits of ABC superfamily: ATP-binding components; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1257792 11776119 EKO11_1186 Escherichia coli KO11FL ABC transporter YP_005276885.1 1256281 D 595495 CDS YP_005276886.1 378711993 11776120 1257817..1258815 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: eoi:ECO111_3270 putative sugar transporter subunit; inner-membrane translocator 1258815 11776120 EKO11_1187 Escherichia coli KO11FL inner-membrane translocator YP_005276886.1 1257817 D 595495 CDS YP_005276887.1 378711994 11779402 1258881..1259942 1 NC_016902.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_2628 putative oxidoreductase; alcohol dehydrogenase 1259942 11779402 EKO11_1188 Escherichia coli KO11FL alcohol dehydrogenase YP_005276887.1 1258881 D 595495 CDS YP_005276888.1 378711995 11776121 1259954..1260826 1 NC_016902.1 PFAM: Aldose 1-epimerase; KEGG: eoh:ECO103_3065 hypothetical protein; aldose 1-epimerase 1260826 11776121 EKO11_1189 Escherichia coli KO11FL aldose 1-epimerase YP_005276888.1 1259954 D 595495 CDS YP_005276889.1 378711996 11776122 complement(1260874..1261296) 1 NC_016902.1 PFAM: DoxX family protein; KEGG: sfx:S2762 hypothetical protein; DoxX family protein 1261296 11776122 EKO11_1190 Escherichia coli KO11FL DoxX family protein YP_005276889.1 1260874 R 595495 CDS YP_005276890.1 378711997 11776123 complement(1261393..1262595) 1 NC_016902.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eoh:ECO103_3062 phenylpropionate dioxygenase ferredoxin reductase subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1262595 11776123 EKO11_1191 Escherichia coli KO11FL FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005276890.1 1261393 R 595495 CDS YP_005276891.1 378711998 11776124 complement(1262605..1263417) 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbo:SBO_2565 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; short-chain dehydrogenase/reductase SDR 1263417 11776124 EKO11_1192 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005276891.1 1262605 R 595495 CDS YP_005276892.1 378711999 11776125 complement(1263414..1263734) 1 NC_016902.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ssn:SSON_2622 3-phenylpropionate dioxygenase ferredoxin subunit; Rieske (2Fe-2S) iron-sulfur domain-containing protein 1263734 11776125 EKO11_1193 Escherichia coli KO11FL Rieske (2Fe-2S) iron-sulfur domain-containing protein YP_005276892.1 1263414 R 595495 CDS YP_005276893.1 378712000 11776126 complement(1263734..1264252) 1 NC_016902.1 PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: eoi:ECO111_3263 3-phenylpropionate dioxygenase subunit beta; aromatic-ring-hydroxylating dioxygenase subunit beta 1264252 11776126 EKO11_1194 Escherichia coli KO11FL aromatic-ring-hydroxylating dioxygenase subunit beta YP_005276893.1 1263734 R 595495 CDS YP_005276894.1 378712001 11776127 complement(1264249..1265610) 1 NC_016902.1 PFAM: Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; Rieske [2Fe-2S] iron-sulphur domain; KEGG: ssn:SSON_2620 large terminal subunit of phenylpropionate dioxygenase; Aromatic-ring-hydroxylating dioxygenase subunit alpha-like protein 1265610 11776127 EKO11_1195 Escherichia coli KO11FL Aromatic-ring-hydroxylating dioxygenase subunit alpha-like protein YP_005276894.1 1264249 R 595495 CDS YP_005276895.1 378712002 11776128 1265746..1266636 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ebd:ECBD_1147 DNA-binding transcriptional regulator HcaR; LysR family transcriptional regulator 1266636 11776128 EKO11_1196 Escherichia coli KO11FL LysR family transcriptional regulator YP_005276895.1 1265746 D 595495 CDS YP_005276896.1 378712003 11776129 1266796..1267935 1 NC_016902.1 KEGG: eoh:ECO103_3053 putative 3-phenylpropionic acid transporter; TIGRFAM: phenyl proprionate permease family protein; PFAM: major facilitator superfamily MFS_1; phenyl proprionate permease family protein 1267935 11776129 EKO11_1197 Escherichia coli KO11FL phenyl proprionate permease family protein YP_005276896.1 1266796 D 595495 CDS YP_005276897.1 378712004 11776130 complement(1267927..1269207) 1 NC_016902.1 PFAM: PRD domain protein; KEGG: eoh:ECO103_3052 stationary phase inducible protein CsiE; transcriptional antiterminator BglG 1269207 11776130 EKO11_1198 Escherichia coli KO11FL transcriptional antiterminator BglG YP_005276897.1 1267927 R 595495 CDS YP_005276898.1 378712005 11776131 complement(1269398..1270252) 1 NC_016902.1 PFAM: alpha/beta hydrolase fold; KEGG: ebd:ECBD_1150 putative enzyme; alpha/beta hydrolase fold protein 1270252 11776131 EKO11_1199 Escherichia coli KO11FL alpha/beta hydrolase fold protein YP_005276898.1 1269398 R 595495 CDS YP_005276899.1 378712006 11776132 complement(1270397..1271200) 1 NC_016902.1 PFAM: inositol monophosphatase; KEGG: sbo:SBO_2557 inositol monophosphatase; inositol monophosphatase 1271200 11776132 EKO11_1200 Escherichia coli KO11FL inositol monophosphatase YP_005276899.1 1270397 R 595495 CDS YP_005276900.1 378712007 11779403 1271319..1272059 1 NC_016902.1 KEGG: sbc:SbBS512_E2907 RNA methyltransferase, TrmH family, group 1; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase, TrmH family, group 1 1272059 11779403 EKO11_1201 Escherichia coli KO11FL RNA methyltransferase, TrmH family, group 1 YP_005276900.1 1271319 D 595495 CDS YP_005276901.1 378712008 11776133 1272329..1272817 1 NC_016902.1 KEGG: sdy:SDY_2727 DNA-binding transcriptional regulator IscR; TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; AsnC family transcriptional regulator 1272817 11776133 EKO11_1202 Escherichia coli KO11FL AsnC family transcriptional regulator YP_005276901.1 1272329 D 595495 CDS YP_005276902.1 378712009 11776134 1272929..1274143 1 NC_016902.1 KEGG: sdy:SDY_2726 cysteine desulfurase; TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; cysteine desulfurase IscS 1274143 11776134 EKO11_1203 Escherichia coli KO11FL cysteine desulfurase IscS YP_005276902.1 1272929 D 595495 CDS YP_005276903.1 378712010 11776135 1274171..1274557 1 NC_016902.1 KEGG: sdy:SDY_2725 scaffold protein; TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; FeS cluster assembly scaffold IscU 1274557 11776135 EKO11_1204 Escherichia coli KO11FL FeS cluster assembly scaffold IscU YP_005276903.1 1274171 D 595495 CDS YP_005276904.1 378712011 11776136 1274574..1274897 1 NC_016902.1 KEGG: sdy:SDY_2724 iron-sulfur cluster assembly protein; TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly protein IscA 1274897 11776136 EKO11_1205 Escherichia coli KO11FL iron-sulfur cluster assembly protein IscA YP_005276904.1 1274574 D 595495 CDS YP_005276905.1 378712012 11776137 1274993..1275508 1 NC_016902.1 TIGRFAM: co-chaperone Hsc20; PFAM: HSC20 oligomerisation; heat shock protein DnaJ domain protein; KEGG: eoh:ECO103_3044 co-chaperone HscB; SMART: heat shock protein DnaJ domain protein; co-chaperone Hsc20 1275508 11776137 EKO11_1206 Escherichia coli KO11FL co-chaperone Hsc20 YP_005276905.1 1274993 D 595495 CDS YP_005276906.1 378712013 11776138 1275525..1277375 1 NC_016902.1 KEGG: sdy:SDY_2722 chaperone protein HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; Fe-S protein assembly chaperone HscA 1277375 11776138 EKO11_1207 Escherichia coli KO11FL Fe-S protein assembly chaperone HscA YP_005276906.1 1275525 D 595495 CDS YP_005276907.1 378712014 11776139 1277377..1277712 1 NC_016902.1 KEGG: sbc:SbBS512_E2900 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; ferredoxin, 2Fe-2S type, ISC system 1277712 11776139 EKO11_1208 Escherichia coli KO11FL ferredoxin, 2Fe-2S type, ISC system YP_005276907.1 1277377 D 595495 CDS YP_005276908.1 378712015 11776140 1277724..1277924 1 NC_016902.1 KEGG: sdy:SDY_2720 hypothetical protein; TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; FeS assembly protein IscX 1277924 11776140 EKO11_1209 Escherichia coli KO11FL FeS assembly protein IscX YP_005276908.1 1277724 D 595495 CDS YP_005276909.1 378712016 11776141 1278102..1279385 1 NC_016902.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ebw:BWG_2287 aminopeptidase B; peptidase M17 leucyl aminopeptidase domain-containing protein 1279385 11776141 EKO11_1210 Escherichia coli KO11FL peptidase M17 leucyl aminopeptidase domain-containing protein YP_005276909.1 1278102 D 595495 CDS YP_005276910.1 378712017 11776142 1279527..1280303 1 NC_016902.1 KEGG: eoh:ECO103_3039 enhanced serine sensitivity protein SseB; enhanced serine sensitivity protein SseB 1280303 11776142 EKO11_1211 Escherichia coli KO11FL enhanced serine sensitivity protein SseB YP_005276910.1 1279527 D 595495 CDS YP_005276911.1 378712018 11776143 complement(1280796..1281641) 1 NC_016902.1 KEGG: ssn:SSON_2603 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 1281641 11776143 EKO11_1212 Escherichia coli KO11FL Rhodanese domain-containing protein YP_005276911.1 1280796 R 595495 CDS YP_005276912.1 378712019 11776144 1281848..1286809 1 NC_016902.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: eoi:ECO111_3244 hypothetical protein; alpha-2-macroglobulin domain-containing protein 1286809 11776144 EKO11_1213 Escherichia coli KO11FL alpha-2-macroglobulin domain-containing protein YP_005276912.1 1281848 D 595495 CDS YP_005276913.1 378712020 11776145 1286810..1289122 1 NC_016902.1 TIGRFAM: penicillin-binding protein 1C; KEGG: eoh:ECO103_3036 penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; penicillin-binding protein 1C 1289122 11776145 EKO11_1214 Escherichia coli KO11FL penicillin-binding protein 1C YP_005276913.1 1286810 D 595495 CDS YP_005276914.1 378712021 11776146 1289271..1289702 1 NC_016902.1 PFAM: nucleoside diphosphate kinase; KEGG: sdy:SDY_2714 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1289702 11776146 EKO11_1215 Escherichia coli KO11FL nucleoside-diphosphate kinase YP_005276914.1 1289271 D 595495 CDS YP_005276915.1 378712022 11776147 1289852..1291006 1 NC_016902.1 KEGG: sdy:SDY_2713 hypothetical protein; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; radical SAM enzyme, Cfr family 1291006 11776147 EKO11_1216 Escherichia coli KO11FL radical SAM enzyme, Cfr family YP_005276915.1 1289852 D 595495 CDS YP_005276916.1 378712023 11779404 1291291..1292304 1 NC_016902.1 KEGG: eoh:ECO103_3033 cytoskeletal protein RodZ; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; transcriptional regulator, XRE family 1292304 11779404 EKO11_1217 Escherichia coli KO11FL transcriptional regulator, XRE family YP_005276916.1 1291291 D 595495 CDS YP_005276917.1 378712024 11776148 1292331..1293449 1 NC_016902.1 KEGG: efe:EFER_0657 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1293449 11776148 EKO11_1218 Escherichia coli KO11FL 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_005276917.1 1292331 D 595495 CDS YP_005276918.1 378712025 11776149 1293560..1294834 1 NC_016902.1 TIGRFAM: histidyl-tRNA synthetase; KEGG: ebd:ECBD_1172 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 1294834 11776149 EKO11_1219 Escherichia coli KO11FL histidyl-tRNA synthetase YP_005276918.1 1293560 D 595495 CDS YP_005276919.1 378712026 11779405 1294852..1295472 1 NC_016902.1 PFAM: Protein of unknown function DUF2133; KEGG: sdy:SDY_2709 hypothetical protein; hypothetical protein 1295472 11779405 EKO11_1220 Escherichia coli KO11FL hypothetical protein YP_005276919.1 1294852 D 595495 CDS YP_005276920.1 378712027 11776150 1295483..1296661 1 NC_016902.1 TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; KEGG: sbo:SBO_2536 outer membrane protein assembly complex subunit YfgL; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; outer membrane assembly lipoprotein YfgL 1296661 11776150 EKO11_1221 Escherichia coli KO11FL outer membrane assembly lipoprotein YfgL YP_005276920.1 1295483 D 595495 CDS YP_005276921.1 378712028 11776151 1296779..1298251 1 NC_016902.1 KEGG: ebd:ECBD_1175 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; ribosome-associated GTPase EngA 1298251 11776151 EKO11_1222 Escherichia coli KO11FL ribosome-associated GTPase EngA YP_005276921.1 1296779 D 595495 CDS YP_005276922.1 378712029 11776152 1298320..1298535 1 NC_016902.1 PFAM: protein of unknown function DUF1407; KEGG: sdy:SDY_2706 hypothetical protein; hypothetical protein 1298535 11776152 EKO11_1223 Escherichia coli KO11FL hypothetical protein YP_005276922.1 1298320 D 595495 CDS YP_005276923.1 378712030 11779406 complement(1298532..1299902) 1 NC_016902.1 KEGG: sbc:SbBS512_E2885 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 1299902 11779406 EKO11_1224 Escherichia coli KO11FL exodeoxyribonuclease VII large subunit YP_005276923.1 1298532 R 595495 CDS YP_005276924.1 378712031 11776153 1300064..1301530 1 NC_016902.1 SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: sbc:SbBS512_E2883 inosine 5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 1301530 11776153 EKO11_1225 Escherichia coli KO11FL inosine-5'-monophosphate dehydrogenase YP_005276924.1 1300064 D 595495 CDS YP_005276925.1 378712032 11776154 1301599..1303176 1 NC_016902.1 KEGG: eok:G2583_3031 GMP synthase (glutamine-hydrolyzing); TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; GMP synthase large subunit 1303176 11776154 EKO11_1226 Escherichia coli KO11FL GMP synthase large subunit YP_005276925.1 1301599 D 595495 CDS YP_005276926.1 378712033 11779407 complement(1303271..1303810) 1 NC_016902.1 KEGG: ebd:ECBD_1180 hypothetical protein; hypothetical protein 1303810 11779407 EKO11_1227 Escherichia coli KO11FL hypothetical protein YP_005276926.1 1303271 R 595495 CDS YP_005276927.1 378712034 11776155 complement(1303826..1304341) 1 NC_016902.1 KEGG: ssn:SSON_2587 putative outer membrane lipoprotein; putative outer membrane lipoprotein 1304341 11776155 EKO11_1228 Escherichia coli KO11FL putative outer membrane lipoprotein YP_005276927.1 1303826 R 595495 CDS YP_005276928.1 378712035 11776156 complement(1304655..1304846) 1 NC_016902.1 manually curated; KEGG: sdy:SDY_2696 hypothetical protein; hypothetical protein 1304846 11776156 EKO11_1229 Escherichia coli KO11FL hypothetical protein YP_005276928.1 1304655 R 595495 CDS YP_005276929.1 378712036 11776157 1304864..1305016 1 NC_016902.1 KEGG: ebd:ECBD_1184 hypothetical protein; hypothetical protein 1305016 11776157 EKO11_1230 Escherichia coli KO11FL hypothetical protein YP_005276929.1 1304864 D 595495 CDS YP_005276930.1 378712037 11776158 1305198..1307441 1 NC_016902.1 KEGG: eoh:ECO103_3020 putative inner membrane protein; PFAM: MASE1 domain protein; EAL domain protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase 1307441 11776158 EKO11_1231 Escherichia coli KO11FL diguanylate cyclase/phosphodiesterase YP_005276930.1 1305198 D 595495 CDS YP_005276931.1 378712038 11776159 complement(1307480..1309021) 1 NC_016902.1 KEGG: ssn:SSON_2584 exopolyphosphatase; PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 1309021 11776159 EKO11_1232 Escherichia coli KO11FL Ppx/GppA phosphatase YP_005276931.1 1307480 R 595495 CDS YP_005276932.1 378712039 11776160 complement(1309026..1311092) 1 NC_016902.1 TIGRFAM: Polyphosphate kinase; KEGG: ebd:ECBD_1187 polyphosphate kinase; PFAM: Polyphosphate kinase; polyphosphate kinase 1311092 11776160 EKO11_1233 Escherichia coli KO11FL polyphosphate kinase YP_005276932.1 1309026 R 595495 CDS YP_005276933.1 378712040 11776161 complement(1311263..1311901) 1 NC_016902.1 KEGG: sfv:SFV_2545 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; phosphoribosylglycinamide formyltransferase 1311901 11776161 EKO11_1234 Escherichia coli KO11FL phosphoribosylglycinamide formyltransferase YP_005276933.1 1311263 R 595495 CDS YP_005276934.1 378712041 11776162 complement(1311901..1312938) 1 NC_016902.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: sfx:S2692 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase 1312938 11776162 EKO11_1235 Escherichia coli KO11FL phosphoribosylformylglycinamidine cyclo-ligase YP_005276934.1 1311901 R 595495 CDS YP_005276935.1 378712042 11776163 1313263..1313889 1 NC_016902.1 KEGG: sdy:SDY_2687 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 1313889 11776163 EKO11_1236 Escherichia coli KO11FL uracil phosphoribosyltransferase YP_005276935.1 1313263 D 595495 CDS YP_005276936.1 378712043 11776164 1313975..1315264 1 NC_016902.1 KEGG: ssn:SSON_2579 uracil transporter; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 1315264 11776164 EKO11_1237 Escherichia coli KO11FL uracil-xanthine permease YP_005276936.1 1313975 D 595495 CDS YP_005276937.1 378712044 11776165 1315314..1316060 1 NC_016902.1 KEGG: sbc:SbBS512_E2870 DNA replication initiation factor; TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; DnaA regulatory inactivator Hda 1316060 11776165 EKO11_1238 Escherichia coli KO11FL DnaA regulatory inactivator Hda YP_005276937.1 1315314 D 595495 CDS YP_005276938.1 378712045 11776166 complement(1316198..1316557) 1 NC_016902.1 KEGG: sdy:SDY_2684 putative oxidoreductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase 1316557 11776166 EKO11_1239 Escherichia coli KO11FL arsenate reductase YP_005276938.1 1316198 R 595495 CDS YP_005276939.1 378712046 11776167 complement(1316578..1318041) 1 NC_016902.1 PFAM: peptidase M48 Ste24p; KEGG: sfv:SFV_2539 hypothetical protein; peptidase M48 Ste24p 1318041 11776167 EKO11_1240 Escherichia coli KO11FL peptidase M48 Ste24p YP_005276939.1 1316578 R 595495 CDS YP_005276940.1 378712047 11776168 1318254..1319315 1 NC_016902.1 PFAM: protein of unknown function UPF0118; KEGG: sdy:SDY_2682 putative permease; hypothetical protein 1319315 11776168 EKO11_1241 Escherichia coli KO11FL hypothetical protein YP_005276940.1 1318254 D 595495 CDS YP_005276941.1 378712048 11776169 complement(1319353..1320201) 1 NC_016902.1 KEGG: eoi:ECO111_3216 putative formate transporter; TIGRFAM: formate/nitrite transporter; PFAM: formate/nitrite transporter; formate/nitrite transporter 1320201 11776169 EKO11_1242 Escherichia coli KO11FL formate/nitrite transporter YP_005276941.1 1319353 R 595495 CDS YP_005276942.1 378712049 11776170 complement(1320223..1322235) 1 NC_016902.1 KEGG: eoi:ECO111_3215 DNA-binding transcriptional activator HyfR, formate sensing; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: GAF domain protein; AAA ATPase; Fis family NifA subfamily transcriptional regulator 1322235 11776170 EKO11_1243 Escherichia coli KO11FL Fis family NifA subfamily transcriptional regulator YP_005276942.1 1320223 R 595495 CDS YP_005276943.1 378712050 11779408 complement(1322265..1322678) 1 NC_016902.1 PFAM: formate hydrogenlyase maturation HycH; KEGG: eoi:ECO111_3214 putative processing element hydrogenase 4; formate hydrogenlyase maturation HycH 1322678 11779408 EKO11_1244 Escherichia coli KO11FL formate hydrogenlyase maturation HycH YP_005276943.1 1322265 R 595495 CDS YP_005276944.1 378712051 11776172 complement(1323425..1323964) 1 NC_016902.1 KEGG: sbo:SBO_2509 hydrogenase 4 subunit H; hydrogenase 4 subunit H 1323964 11776172 EKO11_1246 Escherichia coli KO11FL hydrogenase 4 subunit H YP_005276944.1 1323425 R 595495 CDS YP_005276945.1 378712052 11776173 complement(1323974..1325689) 1 NC_016902.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; nickel-dependent hydrogenase large subunit; NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: sbo:SBO_2508 hydrogenase 4 subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit 1325689 11776173 EKO11_1247 Escherichia coli KO11FL NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_005276945.1 1323974 R 595495 CDS YP_005276946.1 378712053 11776174 complement(1325679..1327259) 1 NC_016902.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: eoi:ECO111_3209 hydrogenase 4 subunit F; NADH/ubiquinone/plastoquinone 1327259 11776174 EKO11_1248 Escherichia coli KO11FL NADH/ubiquinone/plastoquinone YP_005276946.1 1325679 R 595495 CDS YP_005276947.1 378712054 11776175 complement(1327264..1327914) 1 NC_016902.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: ssn:SSON_2566 hydrogenase 4 membrane subunit; NADH-ubiquinone oxidoreductase chain 4L 1327914 11776175 EKO11_1249 Escherichia coli KO11FL NADH-ubiquinone oxidoreductase chain 4L YP_005276947.1 1327264 R 595495 CDS YP_005276948.1 378712055 11776176 complement(1327926..1329365) 1 NC_016902.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: eoi:ECO111_3207 hydrogenase 4 subunit D; NADH/ubiquinone/plastoquinone 1329365 11776176 EKO11_1250 Escherichia coli KO11FL NADH/ubiquinone/plastoquinone YP_005276948.1 1327926 R 595495 CDS YP_005276949.1 378712056 11776177 complement(1329382..1330329) 1 NC_016902.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: eoi:ECO111_3206 hydrogenase 4, membrane subunit HyfC; respiratory-chain NADH dehydrogenase subunit 1 1330329 11776177 EKO11_1251 Escherichia coli KO11FL respiratory-chain NADH dehydrogenase subunit 1 YP_005276949.1 1329382 R 595495 CDS YP_005276950.1 378712057 11776178 complement(1330340..1332358) 1 NC_016902.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: eoi:ECO111_3205 hydrogenase 4 subunit B; NADH/ubiquinone/plastoquinone 1332358 11776178 EKO11_1252 Escherichia coli KO11FL NADH/ubiquinone/plastoquinone YP_005276950.1 1330340 R 595495 CDS YP_005276951.1 378712058 11776179 complement(1332358..1332975) 1 NC_016902.1 KEGG: ssn:SSON_2562 hydrogenase 4 Fe-S subunit; hydrogenase 4 Fe-S subunit 1332975 11776179 EKO11_1253 Escherichia coli KO11FL hydrogenase 4 Fe-S subunit YP_005276951.1 1332358 R 595495 CDS YP_005276952.1 378712059 11776180 complement(1333228..1333698) 1 NC_016902.1 KEGG: sdy:SDY_2669 thioredoxin-dependent thiol peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; peroxiredoxin 1333698 11776180 EKO11_1254 Escherichia coli KO11FL peroxiredoxin YP_005276952.1 1333228 R 595495 CDS YP_005276953.1 378712060 11776181 complement(1333698..1334270) 1 NC_016902.1 PFAM: amino acid-binding ACT domain protein; KEGG: sbc:SbBS512_E2851 glycine cleavage system transcriptional repressor; amino acid-binding ACT protein 1334270 11776181 EKO11_1255 Escherichia coli KO11FL amino acid-binding ACT protein YP_005276953.1 1333698 R 595495 CDS YP_005276954.1 378712061 11776182 1334416..1335294 1 NC_016902.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 1335294 11776182 EKO11_1256 Escherichia coli KO11FL dihydrodipicolinate synthase YP_005276954.1 1334416 D 595495 CDS YP_005276955.1 378712062 11776183 1335311..1336345 1 NC_016902.1 KEGG: ssn:SSON_2558 lipoprotein; lipoprotein 1336345 11776183 EKO11_1257 Escherichia coli KO11FL lipoprotein YP_005276955.1 1335311 D 595495 CDS YP_005276956.1 378712063 11776184 complement(1336256..1336507) 1 NC_016902.1 manually curated; KEGG: sdy:SDY_2665 hypothetical protein; hypothetical protein 1336507 11776184 EKO11_1258 Escherichia coli KO11FL hypothetical protein YP_005276956.1 1336256 R 595495 CDS YP_005276957.1 378712064 11776185 1336558..1337271 1 NC_016902.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: sbc:SbBS512_E2848 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 1337271 11776185 EKO11_1259 Escherichia coli KO11FL phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_005276957.1 1336558 D 595495 CDS YP_005276958.1 378712065 11776186 1337387..1337653 1 NC_016902.1 KEGG: eoh:ECO103_2987 putative post-segregational killing toxin; putative post-segregational killing toxin 1337653 11776186 EKO11_1260 Escherichia coli KO11FL putative post-segregational killing toxin YP_005276958.1 1337387 D 595495 CDS YP_005276959.1 378712066 11776187 1337653..1338051 1 NC_016902.1 PFAM: PilT protein domain protein; KEGG: eoh:ECO103_2986 plasmid maintenance protein; PilT protein domain-containing protein 1338051 11776187 EKO11_1261 Escherichia coli KO11FL PilT protein domain-containing protein YP_005276959.1 1337653 D 595495 CDS YP_005276960.1 378712067 11776188 1338198..1339061 1 NC_016902.1 PFAM: protein of unknown function zinc metallopeptidase; KEGG: sfv:SFV_2520 hypothetical protein; hypothetical protein 1339061 11776188 EKO11_1262 Escherichia coli KO11FL hypothetical protein YP_005276960.1 1338198 D 595495 CDS YP_005276961.1 378712068 11779409 1339076..1341091 1 NC_016902.1 KEGG: eoh:ECO103_2984 putative hydrolase; putative hydrolase 1341091 11779409 EKO11_1263 Escherichia coli KO11FL putative hydrolase YP_005276961.1 1339076 D 595495 CDS YP_005276962.1 378712069 11776189 1341165..1341863 1 NC_016902.1 PFAM: phospholipase/Carboxylesterase; KEGG: ebd:ECBD_1216 esterase YpfH; phospholipase/Carboxylesterase 1341863 11776189 EKO11_1264 Escherichia coli KO11FL phospholipase/Carboxylesterase YP_005276962.1 1341165 D 595495 CDS YP_005276963.1 378712070 11776190 complement(1341944..1342144) 1 NC_016902.1 KEGG: sdy:SDY_2657 hypothetical protein; hypothetical protein 1342144 11776190 EKO11_1265 Escherichia coli KO11FL hypothetical protein YP_005276963.1 1341944 R 595495 CDS YP_005276964.1 378712071 11779410 complement(1342172..1343299) 1 NC_016902.1 KEGG: sbo:SBO_2488 succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; succinyl-diaminopimelate desuccinylase 1343299 11779410 EKO11_1266 Escherichia coli KO11FL succinyl-diaminopimelate desuccinylase YP_005276964.1 1342172 R 595495 CDS YP_005276965.1 378712072 11776191 complement(1343303..1343659) 1 NC_016902.1 PFAM: arsenate reductase and related; KEGG: sdy:SDY_2655 hypothetical protein; arsenate reductase-like protein 1343659 11776191 EKO11_1267 Escherichia coli KO11FL arsenate reductase-like protein YP_005276965.1 1343303 R 595495 CDS YP_005276966.1 378712073 11776192 complement(1344198..1347311) 1 NC_016902.1 KEGG: eoh:ECO103_2979 aminoglycoside/multidrug efflux system; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1347311 11776192 EKO11_1268 Escherichia coli KO11FL hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_005276966.1 1344198 R 595495 CDS YP_005276967.1 378712074 11776193 complement(1347475..1349175) 1 NC_016902.1 KEGG: eoh:ECO103_2978 nitrate/nitrite sensor protein NarQ; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 1349175 11776193 EKO11_1269 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005276967.1 1347475 R 595495 CDS YP_005276968.1 378712075 11776194 1349381..1351360 1 NC_016902.1 KEGG: eoi:ECO111_3188 putative oxidoreductase Fe-S binding subunit; TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase, small subunit 1351360 11776194 EKO11_1270 Escherichia coli KO11FL glutamate synthase, small subunit YP_005276968.1 1349381 D 595495 CDS YP_005276969.1 378712076 11776195 1351428..1352003 1 NC_016902.1 PFAM: NUDIX hydrolase; KEGG: sbc:SbBS512_E2835 hydrolase, NUDIX family; NUDIX hydrolase 1352003 11776195 EKO11_1271 Escherichia coli KO11FL NUDIX hydrolase YP_005276969.1 1351428 D 595495 CDS YP_005276970.1 378712077 11776196 1352129..1353172 1 NC_016902.1 PFAM: protein of unknown function DUF1176; KEGG: eoh:ECO103_2975 hypothetical protein; hypothetical protein 1353172 11776196 EKO11_1272 Escherichia coli KO11FL hypothetical protein YP_005276970.1 1352129 D 595495 CDS YP_005276971.1 378712078 11776197 complement(1353268..1355271) 1 NC_016902.1 KEGG: ebd:ECBD_1225 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; transketolase 1355271 11776197 EKO11_1273 Escherichia coli KO11FL transketolase YP_005276971.1 1353268 R 595495 CDS YP_005276972.1 378712079 11776198 complement(1355291..1356241) 1 NC_016902.1 KEGG: ebd:ECBD_1226 transaldolase A; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 1356241 11776198 EKO11_1274 Escherichia coli KO11FL transaldolase YP_005276972.1 1355291 R 595495 CDS YP_005276973.1 378712080 11776199 1356530..1358809 1 NC_016902.1 PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: sbo:SBO_2478 malic enzyme; malic protein NAD-binding protein 1358809 11776199 EKO11_1275 Escherichia coli KO11FL malic protein NAD-binding protein YP_005276973.1 1356530 D 595495 CDS YP_005276974.1 378712081 11776200 1359102..1359437 1 NC_016902.1 PFAM: microcompartments protein; KEGG: sfv:SFV_2506 hypothetical protein; microcompartments protein 1359437 11776200 EKO11_1276 Escherichia coli KO11FL microcompartments protein YP_005276974.1 1359102 D 595495 CDS YP_005276975.1 378712082 11776201 1359450..1359929 1 NC_016902.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: sbc:SbBS512_E2827 ethanolamine utilization protein, EutP; ethanolamine utilization protein, EutP 1359929 11776201 EKO11_1277 Escherichia coli KO11FL ethanolamine utilization protein, EutP YP_005276975.1 1359450 D 595495 CDS YP_005276976.1 378712083 11776202 1359904..1360605 1 NC_016902.1 PFAM: Ethanolamine utilisation EutQ family protein; KEGG: eoh:ECO103_2969 hypothetical protein; ethanolamine utilization EutQ family protein 1360605 11776202 EKO11_1278 Escherichia coli KO11FL ethanolamine utilization EutQ family protein YP_005276976.1 1359904 D 595495 CDS YP_005276977.1 378712084 11776203 1360602..1361405 1 NC_016902.1 KEGG: eoh:ECO103_2968 putative cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; cob(I)yrinic acid a,c-diamide adenosyltransferase 1361405 11776203 EKO11_1279 Escherichia coli KO11FL cob(I)yrinic acid a,c-diamide adenosyltransferase YP_005276977.1 1360602 D 595495 CDS YP_005276978.1 378712085 11779411 1361402..1362418 1 NC_016902.1 KEGG: ebd:ECBD_1232 phosphotransacetylase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; phosphate acetyltransferase 1362418 11779411 EKO11_1280 Escherichia coli KO11FL phosphate acetyltransferase YP_005276978.1 1361402 D 595495 CDS YP_005276979.1 378712086 11776204 1362415..1362750 1 NC_016902.1 PFAM: microcompartments protein; KEGG: sbc:SbBS512_E2823 ethanolamine utilization protein EutM; microcompartments protein 1362750 11776204 EKO11_1281 Escherichia coli KO11FL microcompartments protein YP_005276979.1 1362415 D 595495 CDS YP_005276980.1 378712087 11776205 1362857..1363144 1 NC_016902.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: sbc:SbBS512_E2822 ethanolamine utilization protein; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 1363144 11776205 EKO11_1282 Escherichia coli KO11FL ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_005276980.1 1362857 D 595495 CDS YP_005276981.1 378712088 11779412 1363156..1364559 1 NC_016902.1 PFAM: Aldehyde Dehydrogenase; KEGG: eoh:ECO103_2964 putative aldehyde dehydrogenase EutE; Aldehyde Dehydrogenase 1364559 11779412 EKO11_1283 Escherichia coli KO11FL Aldehyde Dehydrogenase YP_005276981.1 1363156 D 595495 CDS YP_005276982.1 378712089 11776206 1364570..1365406 1 NC_016902.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: ebw:BWG_2216 putative chaperonin, ethanolamine utilization protein; ethanolamine utilization protein EutJ family protein 1365406 11776206 EKO11_1284 Escherichia coli KO11FL ethanolamine utilization protein EutJ family protein YP_005276982.1 1364570 D 595495 CDS YP_005276983.1 378712090 11776207 1365396..1366583 1 NC_016902.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: efe:EFER_0726 putative alcohol dehydrogenase in ethanolamine utilization; ethanolaminosome; iron-containing alcohol dehydrogenase 1366583 11776207 EKO11_1285 Escherichia coli KO11FL iron-containing alcohol dehydrogenase YP_005276983.1 1365396 D 595495 CDS YP_005276984.1 378712091 11779413 1366700..1367926 1 NC_016902.1 PFAM: Ethanolamine utilisation protein EutH; KEGG: eoh:ECO103_2961 putative inner membrane protein; Ethanolamine utilization protein EutH 1367926 11779413 EKO11_1286 Escherichia coli KO11FL Ethanolamine utilization protein EutH YP_005276984.1 1366700 D 595495 CDS YP_005276985.1 378712092 11779414 1367923..1369326 1 NC_016902.1 PFAM: Ethanolamine utilisation EutA; KEGG: eoh:ECO103_2960 reactivating factor for ethanolamine ammonia lyase; ethanolamine utilization EutA 1369326 11779414 EKO11_1287 Escherichia coli KO11FL ethanolamine utilization EutA YP_005276985.1 1367923 D 595495 CDS YP_005276986.1 378712093 11776208 1369338..1370699 1 NC_016902.1 KEGG: sbc:SbBS512_E2816 ethanolamine ammonia-lyase, large subunit; PFAM: Ethanolamine ammonia lyase large subunit; ethanolamine ammonia-lyase 1370699 11776208 EKO11_1288 Escherichia coli KO11FL ethanolamine ammonia-lyase YP_005276986.1 1369338 D 595495 CDS YP_005276987.1 378712094 11776209 1370720..1371607 1 NC_016902.1 KEGG: sdy:SDY_2638 ethanolamine ammonia-lyase small subunit; PFAM: Ethanolamine ammonia-lyase light chain; ethanolamine ammonia-lyase 1371607 11776209 EKO11_1289 Escherichia coli KO11FL ethanolamine ammonia-lyase YP_005276987.1 1370720 D 595495 CDS YP_005276988.1 378712095 11776210 1371617..1372276 1 NC_016902.1 PFAM: microcompartments protein; KEGG: sbc:SbBS512_E2811 putative ethanolamine utilization protein EutL; microcompartments protein 1372276 11776210 EKO11_1290 Escherichia coli KO11FL microcompartments protein YP_005276988.1 1371617 D 595495 CDS YP_005276989.1 378712096 11776211 1372289..1372789 1 NC_016902.1 PFAM: microcompartments protein; KEGG: sbc:SbBS512_E2810 putative ethanolamine utilization protein EutK; microcompartments protein 1372789 11776211 EKO11_1291 Escherichia coli KO11FL microcompartments protein YP_005276989.1 1372289 D 595495 CDS YP_005276990.1 378712097 11776212 1372835..1373887 1 NC_016902.1 KEGG: eoh:ECO103_2955 transcriptional regulator EutR; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 1373887 11776212 EKO11_1292 Escherichia coli KO11FL AraC family transcriptional regulator YP_005276990.1 1372835 D 595495 CDS YP_005276991.1 378712098 11776213 complement(1373893..1374792) 1 NC_016902.1 KEGG: sbo:SBO_2461 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase; coproporphyrinogen oxidase 1374792 11776213 EKO11_1293 Escherichia coli KO11FL coproporphyrinogen oxidase YP_005276991.1 1373893 R 595495 CDS YP_005276992.1 378712099 11776214 complement(1374796..1375665) 1 NC_016902.1 KEGG: sbc:SbBS512_E2807 N-acetylmuramoyl-L-alanine amidase I; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 1375665 11776214 EKO11_1294 Escherichia coli KO11FL cell wall hydrolase/autolysin YP_005276992.1 1374796 R 595495 CDS YP_005276993.1 378712100 11776215 1375768..1376304 1 NC_016902.1 KEGG: eok:G2583_2965 acetyltransferase YpeA; manually curated; PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1376304 11776215 EKO11_1295 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005276993.1 1375768 D 595495 CDS YP_005276994.1 378712101 11776216 1376291..1376740 1 NC_016902.1 KEGG: eok:G2583_2964 hypothetical protein; hypothetical protein 1376740 11776216 EKO11_1296 Escherichia coli KO11FL hypothetical protein YP_005276994.1 1376291 D 595495 CDS YP_005276995.1 378712102 11776217 1376801..1377376 1 NC_016902.1 PFAM: protein of unknown function DUF1131; KEGG: sdy:SDY_2630 hypothetical protein; hypothetical protein 1377376 11776217 EKO11_1297 Escherichia coli KO11FL hypothetical protein YP_005276995.1 1376801 D 595495 CDS YP_005276996.1 378712103 11776218 1377472..1378371 1 NC_016902.1 KEGG: sbc:SbBS512_E2803 dyp-type peroxidase family protein; TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; dyp-type peroxidase family protein 1378371 11776218 EKO11_1298 Escherichia coli KO11FL dyp-type peroxidase family protein YP_005276996.1 1377472 D 595495 CDS YP_005276997.1 378712104 11776219 complement(1378429..1379733) 1 NC_016902.1 PFAM: beta-lactamase; KEGG: eoj:ECO26_3482 hypothetical protein; beta-lactamase 1379733 11776219 EKO11_1299 Escherichia coli KO11FL beta-lactamase YP_005276997.1 1378429 R 595495 CDS YP_005276998.1 378712105 11779415 complement(1379738..1381162) 1 NC_016902.1 KEGG: eoh:ECO103_2947 PTS system N-acetylmuramic acid transporter subunits EIIBC; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; Protein-N(pi)-phosphohistidine--sugar phosphotransferase 1381162 11779415 EKO11_1300 Escherichia coli KO11FL Protein-N(pi)-phosphohistidine--sugar phosphotransferase YP_005276998.1 1379738 R 595495 CDS YP_005276999.1 378712106 11779416 complement(1381166..1382062) 1 NC_016902.1 KEGG: eoj:ECO26_3480 N-acetylmuramic acid-6-phosphate etherase; TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS); RpiR family transcriptional regulator 1382062 11779416 EKO11_1301 Escherichia coli KO11FL RpiR family transcriptional regulator YP_005276999.1 1381166 R 595495 CDS YP_005277000.1 378712107 11776220 1382226..1383083 1 NC_016902.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sbc:SbBS512_E2799 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 1383083 11776220 EKO11_1302 Escherichia coli KO11FL RpiR family transcriptional regulator YP_005277000.1 1382226 D 595495 CDS YP_005277001.1 378712108 11776221 1383212..1384003 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eoh:ECO103_2944 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1384003 11776221 EKO11_1303 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005277001.1 1383212 D 595495 CDS YP_005277002.1 378712109 11776222 1384174..1385190 1 NC_016902.1 KEGG: eoh:ECO103_2943 thiosulfate transporter subunit; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; sulfate ABC transporter, periplasmic sulfate-binding protein 1385190 11776222 EKO11_1304 Escherichia coli KO11FL sulfate ABC transporter, periplasmic sulfate-binding protein YP_005277002.1 1384174 D 595495 CDS YP_005277003.1 378712110 11776223 1385190..1386023 1 NC_016902.1 KEGG: sbc:SbBS512_E2796 sulfate/thiosulfate transporter subunit; TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease 1386023 11776223 EKO11_1305 Escherichia coli KO11FL sulfate ABC transporter permease YP_005277003.1 1385190 D 595495 CDS YP_005277004.1 378712111 11776224 1386023..1386898 1 NC_016902.1 KEGG: eoi:ECO111_3152 sulfate/thiosulfate transporter permease subunit; TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease 1386898 11776224 EKO11_1306 Escherichia coli KO11FL sulfate ABC transporter permease YP_005277004.1 1386023 D 595495 CDS YP_005277005.1 378712112 11776225 1386888..1387985 1 NC_016902.1 TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: eoh:ECO103_2940 sulfate/thiosulfate transporter subunit; SMART: AAA ATPase; sulfate ABC transporter ATPase 1387985 11776225 EKO11_1307 Escherichia coli KO11FL sulfate ABC transporter ATPase YP_005277005.1 1386888 D 595495 CDS YP_005277006.1 378712113 11776226 1388119..1389030 1 NC_016902.1 KEGG: ssn:SSON_2510 cysteine synthase B; TIGRFAM: cysteine synthase B; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; cysteine synthase B 1389030 11776226 EKO11_1308 Escherichia coli KO11FL cysteine synthase B YP_005277006.1 1388119 D 595495 CDS YP_005277007.1 378712114 11776227 complement(1389033..1389401) 1 NC_016902.1 KEGG: eoh:ECO103_2938 hypothetical protein; hypothetical protein 1389401 11776227 EKO11_1309 Escherichia coli KO11FL hypothetical protein YP_005277007.1 1389033 R 595495 CDS YP_005277008.1 378712115 11776228 1389506..1390357 1 NC_016902.1 KEGG: ssn:SSON_2508 pyridoxal kinase; TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; pyridoxal kinase 1390357 11776228 EKO11_1310 Escherichia coli KO11FL pyridoxal kinase YP_005277008.1 1389506 D 595495 CDS YP_005277009.1 378712116 11776229 complement(1390399..1390908) 1 NC_016902.1 KEGG: ssn:SSON_2506 PTS system glucose-specific transporter subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; PTS system glucose subfamily transporter subunit IIA 1390908 11776229 EKO11_1311 Escherichia coli KO11FL PTS system glucose subfamily transporter subunit IIA YP_005277009.1 1390399 R 595495 CDS YP_005277010.1 378712117 11776230 complement(1390949..1392676) 1 NC_016902.1 KEGG: sdy:SDY_2613 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; phosphoenolpyruvate-protein phosphotransferase 1392676 11776230 EKO11_1312 Escherichia coli KO11FL phosphoenolpyruvate-protein phosphotransferase YP_005277010.1 1390949 R 595495 CDS YP_005277011.1 378712118 11779417 complement(1392721..1392978) 1 NC_016902.1 KEGG: cro:ROD_23741 phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; phosphotransferase system, phosphocarrier protein HPr 1392978 11779417 EKO11_1313 Escherichia coli KO11FL phosphotransferase system, phosphocarrier protein HPr YP_005277011.1 1392721 R 595495 CDS YP_005277012.1 378712119 11776231 complement(1393362..1394333) 1 NC_016902.1 KEGG: sbc:SbBS512_E2766 cysteine synthase A; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; cysteine synthase A 1394333 11776231 EKO11_1314 Escherichia coli KO11FL cysteine synthase A YP_005277012.1 1393362 R 595495 CDS YP_005277013.1 378712120 11776232 complement(1394518..1395279) 1 NC_016902.1 KEGG: eoh:ECO103_2932 putative sulfate transport protein CysZ; putative sulfate transport protein CysZ 1395279 11776232 EKO11_1315 Escherichia coli KO11FL putative sulfate transport protein CysZ YP_005277013.1 1394518 R 595495 CDS YP_005277014.1 378712121 11776233 1395509..1396495 1 NC_016902.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region protein; KEGG: sfv:SFV_2464 cell division protein ZipA; SMART: ZipA FtsZ-binding region protein; cell division protein ZipA 1396495 11776233 EKO11_1316 Escherichia coli KO11FL cell division protein ZipA YP_005277014.1 1395509 D 595495 CDS YP_005277015.1 378712122 11776234 1396566..1398581 1 NC_016902.1 TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein; KEGG: eoh:ECO103_2930 NAD-dependent DNA ligase LigA; SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; NAD-dependent DNA ligase 1398581 11776234 EKO11_1317 Escherichia coli KO11FL NAD-dependent DNA ligase YP_005277015.1 1396566 D 595495 CDS YP_005277016.1 378712123 11776235 1398583..1398801 1 NC_016902.1 KEGG: sdy:SDY_2607 hypothetical protein; hypothetical protein 1398801 11776235 EKO11_1318 Escherichia coli KO11FL hypothetical protein YP_005277016.1 1398583 D 595495 CDS YP_005277017.1 378712124 11776236 complement(1398798..1399796) 1 NC_016902.1 PFAM: Bile acid:sodium symporter; KEGG: ssn:SSON_2498 putative cytochrome oxidase; bile acid:sodium symporter 1399796 11776236 EKO11_1319 Escherichia coli KO11FL bile acid:sodium symporter YP_005277017.1 1398798 R 595495 CDS YP_005277018.1 378712125 11776237 1399886..1400812 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbc:SbBS512_E2773 transcriptional regulator, LysR family; LysR family transcriptional regulator 1400812 11776237 EKO11_1320 Escherichia coli KO11FL LysR family transcriptional regulator YP_005277018.1 1399886 D 595495 CDS YP_005277019.1 378712126 11776238 complement(1400803..1401144) 1 NC_016902.1 KEGG: sbc:SbBS512_E2772 hypothetical protein; hypothetical protein 1401144 11776238 EKO11_1321 Escherichia coli KO11FL hypothetical protein YP_005277019.1 1400803 R 595495 CDS YP_005277020.1 378712127 11776243 1402076..1403491 1 NC_016902.1 KEGG: sfx:S2605 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 1403491 11776243 EKO11_1322 Escherichia coli KO11FL glutamyl-tRNA synthetase YP_005277020.1 1402076 D 595495 CDS YP_005277021.1 378712128 11776244 complement(1403543..1403935) 1 NC_016902.1 KEGG: sbc:SbBS512_E2780 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1323; hypothetical protein 1403935 11776244 EKO11_1323 Escherichia coli KO11FL hypothetical protein YP_005277021.1 1403543 R 595495 CDS YP_005277022.1 378712129 11776245 complement(1403937..1404296) 1 NC_016902.1 PFAM: protein of unknown function DUF1323; KEGG: sdy:SDY_2596 hypothetical protein; hypothetical protein 1404296 11776245 EKO11_1324 Escherichia coli KO11FL hypothetical protein YP_005277022.1 1403937 R 595495 CDS YP_005277023.1 378712130 11776247 1404856..1407105 1 NC_016902.1 manually curated; PFAM: EAL domain protein; MASE1 domain protein; GGDEF domain containing protein; KEGG: sbo:SBO_2421 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase 1407105 11776247 EKO11_1325 Escherichia coli KO11FL diguanylate cyclase/phosphodiesterase YP_005277023.1 1404856 D 595495 CDS YP_005277024.1 378712131 11776248 complement(1407155..1408357) 1 NC_016902.1 KEGG: sdy:SDY_2593 permease of transport system for 3 nucleosides; TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; nucleoside transporter 1408357 11776248 EKO11_1326 Escherichia coli KO11FL nucleoside transporter YP_005277024.1 1407155 R 595495 CDS YP_005277025.1 378712132 11776249 1408694..1409932 1 NC_016902.1 KEGG: sbc:SbBS512_E2760 manganese transport protein MntH; TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; NRAMP family Mn2+/Fe2+ transporter 1409932 11776249 EKO11_1327 Escherichia coli KO11FL NRAMP family Mn2+/Fe2+ transporter YP_005277025.1 1408694 D 595495 CDS YP_005277026.1 378712133 11779419 complement(1410073..1410399) 1 NC_016902.1 PFAM: Protein of unknown function DUF2502; KEGG: sbc:SbBS512_E2759 hypothetical protein; hypothetical protein 1410399 11779419 EKO11_1328 Escherichia coli KO11FL hypothetical protein YP_005277026.1 1410073 R 595495 CDS YP_005277027.1 378712134 11776250 complement(1410514..1411770) 1 NC_016902.1 PFAM: Cl- channel voltage-gated family protein; KEGG: sbc:SbBS512_E2758 hypothetical protein; Cl- channel voltage-gated family protein 1411770 11776250 EKO11_1329 Escherichia coli KO11FL Cl- channel voltage-gated family protein YP_005277027.1 1410514 R 595495 CDS YP_005277028.1 378712135 11776251 1411974..1412939 1 NC_016902.1 TIGRFAM: glucokinase; KEGG: ssn:SSON_2480 glucokinase; PFAM: Glucokinase; glucokinase 1412939 11776251 EKO11_1330 Escherichia coli KO11FL glucokinase YP_005277028.1 1411974 D 595495 CDS YP_005277029.1 378712136 11776252 1413158..1413484 1 NC_016902.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; KEGG: eoh:ECO103_2912 putative enzyme IIB component of PTS; PTS system fructose-specific transporter subunit IIB 1413484 11776252 EKO11_1331 Escherichia coli KO11FL PTS system fructose-specific transporter subunit IIB YP_005277029.1 1413158 D 595495 CDS YP_005277030.1 378712137 11776253 1413506..1414753 1 NC_016902.1 KEGG: sbc:SbBS512_E2755 PTS system, fructose-like, IIC component; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; PTS system fructose subfamily transporter subunit IIC 1414753 11776253 EKO11_1332 Escherichia coli KO11FL PTS system fructose subfamily transporter subunit IIC YP_005277030.1 1413506 D 595495 CDS YP_005277031.1 378712138 11776254 1414768..1415853 1 NC_016902.1 PFAM: peptidase M24; creatinase; KEGG: sbo:SBO_2411 aminopeptidase; peptidase M24 1415853 11776254 EKO11_1333 Escherichia coli KO11FL peptidase M24 YP_005277031.1 1414768 D 595495 CDS YP_005277032.1 378712139 11776255 1415853..1416890 1 NC_016902.1 KEGG: ebw:BWG_2152 exoaminopeptidase; PFAM: peptidase M42 family protein; glutamyl aminopeptidase 1416890 11776255 EKO11_1334 Escherichia coli KO11FL glutamyl aminopeptidase YP_005277032.1 1415853 D 595495 CDS YP_005277033.1 378712140 11776256 1416915..1419410 1 NC_016902.1 KEGG: eoh:ECO103_2908 fused putative PTS enzymes: HPr component/enzyme I component/enzyme IIA component; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PTS system, fructose subfamily, IIA subunit; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; phosphoryl transfer system HPr; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphoenolpyruvate-protein phosphotransferase 1419410 11776256 EKO11_1335 Escherichia coli KO11FL phosphoenolpyruvate-protein phosphotransferase YP_005277033.1 1416915 D 595495 CDS YP_005277034.1 378712141 11776257 complement(1419413..1420270) 1 NC_016902.1 KEGG: ssn:SSON_2474 putative AraC-type regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 1420270 11776257 EKO11_1336 Escherichia coli KO11FL AraC family transcriptional regulator YP_005277034.1 1419413 R 595495 CDS YP_005277035.1 378712142 11776258 complement(1420283..1421017) 1 NC_016902.1 KEGG: sbc:SbBS512_E2750 response regulator; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; LytTR family two component transcriptional regulator 1421017 11776258 EKO11_1337 Escherichia coli KO11FL LytTR family two component transcriptional regulator YP_005277035.1 1420283 R 595495 CDS YP_005277036.1 378712143 11779420 complement(1421032..1422729) 1 NC_016902.1 KEGG: sbo:SBO_2406 putative sensor protein; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; signal transduction histidine kinase LytS 1422729 11779420 EKO11_1338 Escherichia coli KO11FL signal transduction histidine kinase LytS YP_005277036.1 1421032 R 595495 CDS YP_005277037.1 378712144 11776259 1423106..1424344 1 NC_016902.1 PFAM: aminotransferase class I and II; KEGG: ebd:ECBD_1293 aminotransferase; class I and II aminotransferase 1424344 11776259 EKO11_1339 Escherichia coli KO11FL class I and II aminotransferase YP_005277037.1 1423106 D 595495 CDS YP_005277038.1 378712145 11779421 complement(1424836..1425822) 1 NC_016902.1 manually curated; TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; KEGG: sfv:SFV_2436 lipid A biosynthesis palmitoleoyl acyltransferase; PFAM: lipid A biosynthesis acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 1425822 11779421 EKO11_1340 Escherichia coli KO11FL lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_005277038.1 1424836 R 595495 CDS YP_005277039.1 378712146 11776260 1426109..1426351 1 NC_016902.1 KEGG: sdy:SDY_2575 hypothetical protein; hypothetical protein 1426351 11776260 EKO11_1341 Escherichia coli KO11FL hypothetical protein YP_005277039.1 1426109 D 595495 CDS YP_005277040.1 378712147 11776261 complement(1426428..1426703) 1 NC_016902.1 KEGG: ssn:SSON_2467 hypothetical protein; hypothetical protein 1426703 11776261 EKO11_1342 Escherichia coli KO11FL hypothetical protein YP_005277040.1 1426428 R 595495 CDS YP_005277041.1 378712148 11776262 1426999..1427631 1 NC_016902.1 KEGG: sdy:SDY_2573 hypothetical protein; hypothetical protein 1427631 11776262 EKO11_1343 Escherichia coli KO11FL hypothetical protein YP_005277041.1 1426999 D 595495 CDS YP_005277042.1 378712149 11776263 1428144..1429394 1 NC_016902.1 KEGG: sbo:SBO_2400 formyl-coenzyme A transferase; TIGRFAM: formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 1429394 11776263 EKO11_1344 Escherichia coli KO11FL formyl-CoA transferase YP_005277042.1 1428144 D 595495 CDS YP_005277043.1 378712150 11776264 1429448..1431142 1 NC_016902.1 KEGG: ssn:SSON_2464 putative oxalyl-CoA decarboxylase; TIGRFAM: oxalyl-CoA decarboxylase; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; oxalyl-CoA decarboxylase 1431142 11776264 EKO11_1345 Escherichia coli KO11FL oxalyl-CoA decarboxylase YP_005277043.1 1429448 D 595495 CDS YP_005277044.1 378712151 11776265 1431212..1432156 1 NC_016902.1 PFAM: Auxin Efflux Carrier; KEGG: sdy:SDY_2570 putative transporter YfdV; auxin efflux carrier family protein 1432156 11776265 EKO11_1346 Escherichia coli KO11FL auxin efflux carrier family protein YP_005277044.1 1431212 D 595495 CDS YP_005277045.1 378712152 11776266 1432230..1433375 1 NC_016902.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ebd:ECBD_1301 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 1433375 11776266 EKO11_1347 Escherichia coli KO11FL L-carnitine dehydratase/bile acid-inducible protein F YP_005277045.1 1432230 D 595495 CDS YP_005277046.1 378712153 11776267 complement(1433431..1437024) 1 NC_016902.1 KEGG: eoi:ECO111_3106 hybrid sensory histidine kinase in two-component regulatory system with EvgA; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; extracellular solute-binding protein family 3; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; extracellular solute-binding protein family 3; Hpt domain protein; Hpt sensor hybrid histidine kinase 1437024 11776267 EKO11_1348 Escherichia coli KO11FL Hpt sensor hybrid histidine kinase YP_005277046.1 1433431 R 595495 CDS YP_005277047.1 378712154 11776268 complement(1437029..1437643) 1 NC_016902.1 KEGG: sdy:SDY_4477 DNA-binding transcriptional activator EvgA; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; two component transcriptional regulator, LuxR family 1437643 11776268 EKO11_1349 Escherichia coli KO11FL two component transcriptional regulator, LuxR family YP_005277047.1 1437029 R 595495 CDS YP_005277048.1 378712155 11779422 1438059..1439222 1 NC_016902.1 KEGG: ebd:ECBD_1304 efflux pump membrane protein; TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; efflux pump membrane protein 1439222 11779422 EKO11_1350 Escherichia coli KO11FL efflux pump membrane protein YP_005277048.1 1438059 D 595495 CDS YP_005277049.1 378712156 11779423 1439222..1440760 1 NC_016902.1 KEGG: sbo:SBO_2393 multidrug resistance protein Y; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter 1440760 11779423 EKO11_1351 Escherichia coli KO11FL EmrB/QacA subfamily drug resistance transporter YP_005277049.1 1439222 D 595495 CDS YP_005277050.1 378712157 11776269 complement(1440868..1442196) 1 NC_016902.1 TIGRFAM: D-serine ammonia-lyase; KEGG: ebw:BWG_2134 D-serine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; D-serine ammonia-lyase 1442196 11776269 EKO11_1352 Escherichia coli KO11FL D-serine ammonia-lyase YP_005277050.1 1440868 R 595495 CDS YP_005277051.1 378712158 11776271 1442663..1443658 1 NC_016902.1 manually curated; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; KEGG: eoh:ECO103_2889 sucrose operon repressor; SMART: regulatory protein LacI; LacI family transcriptional regulator 1443658 11776271 EKO11_1354 Escherichia coli KO11FL LacI family transcriptional regulator YP_005277051.1 1442663 D 595495 CDS YP_005277052.1 378712159 11776272 complement(1443666..1445099) 1 NC_016902.1 TIGRFAM: sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolase family 32 domain protein; KEGG: eoh:ECO103_2888 sucrose-6 phosphate hydrolase; SMART: glycoside hydrolase family 32; sucrose-6-phosphate hydrolase 1445099 11776272 EKO11_1355 Escherichia coli KO11FL sucrose-6-phosphate hydrolase YP_005277052.1 1443666 R 595495 CDS YP_005277053.1 378712160 11776273 1445315..1446229 1 NC_016902.1 PFAM: PfkB domain protein; KEGG: eoh:ECO103_2887 aminoimidazole riboside kinase; PfkB domain-containing protein 1446229 11776273 EKO11_1356 Escherichia coli KO11FL PfkB domain-containing protein YP_005277053.1 1445315 D 595495 CDS YP_005277054.1 378712161 11776274 1446301..1447548 1 NC_016902.1 TIGRFAM: oligosaccharide/H+ symporter, major facilitator superfamily (MFS); KEGG: eoh:ECO103_2886 galactoside permease; oligosaccharide/H+ symporter, major facilitator superfamily (MFS) 1447548 11776274 EKO11_1357 Escherichia coli KO11FL oligosaccharide/H+ symporter, major facilitator superfamily (MFS) YP_005277054.1 1446301 D 595495 CDS YP_005277055.1 378712162 11776276 complement(1448078..1448278) 1 NC_016902.1 KEGG: eoj:ECO26_3393 hypothetical protein; hypothetical protein 1448278 11776276 EKO11_1359 Escherichia coli KO11FL hypothetical protein YP_005277055.1 1448078 R 595495 CDS YP_005277056.1 378712163 11776277 complement(1448402..1448746) 1 NC_016902.1 KEGG: eoi:ECO111_2978 hypothetical protein; hypothetical protein 1448746 11776277 EKO11_1360 Escherichia coli KO11FL hypothetical protein YP_005277056.1 1448402 R 595495 CDS YP_005277057.1 378712164 11776278 complement(1448804..1449604) 1 NC_016902.1 KEGG: bge:BC1002_6529 hypothetical protein; hypothetical protein 1449604 11776278 EKO11_1361 Escherichia coli KO11FL hypothetical protein YP_005277057.1 1448804 R 595495 CDS YP_005277058.1 378712165 11776279 complement(1449647..1449931) 1 NC_016902.1 PFAM: protein of unknown function DUF437; KEGG: ebr:ECB_00727 phage related protein; hypothetical protein 1449931 11776279 EKO11_1362 Escherichia coli KO11FL hypothetical protein YP_005277058.1 1449647 R 595495 CDS YP_005277059.1 378712166 11779424 complement(1449924..1450613) 1 NC_016902.1 PFAM: protein of unknown function DUF551; KEGG: eoh:ECO103_1185 hypothetical protein; hypothetical protein 1450613 11779424 EKO11_1363 Escherichia coli KO11FL hypothetical protein YP_005277059.1 1449924 R 595495 CDS YP_005277060.1 378712167 11776280 complement(1450615..1451214) 1 NC_016902.1 PFAM: protein of unknown function DUF550; KEGG: eoj:ECO26_3387 hypothetical protein; hypothetical protein 1451214 11776280 EKO11_1364 Escherichia coli KO11FL hypothetical protein YP_005277060.1 1450615 R 595495 CDS YP_005277061.1 378712168 11776281 complement(1451211..1451855) 1 NC_016902.1 KEGG: shw:Sputw3181_2519 hypothetical protein; hypothetical protein 1451855 11776281 EKO11_1365 Escherichia coli KO11FL hypothetical protein YP_005277061.1 1451211 R 595495 CDS YP_005277062.1 378712169 11776282 complement(1451852..1452370) 1 NC_016902.1 KEGG: seh:SeHA_C0371 hypothetical protein; hypothetical protein 1452370 11776282 EKO11_1366 Escherichia coli KO11FL hypothetical protein YP_005277062.1 1451852 R 595495 CDS YP_005277063.1 378712170 11776283 complement(1452367..1452531) 1 NC_016902.1 manually curated; KEGG: sew:SeSA_A0608 hypothetical protein; hypothetical protein 1452531 11776283 EKO11_1367 Escherichia coli KO11FL hypothetical protein YP_005277063.1 1452367 R 595495 CDS YP_005277064.1 378712171 11776284 complement(1452542..1452835) 1 NC_016902.1 PFAM: Bacteriophage P22, anti-RecBCD protein 2; KEGG: eoj:ECO26_0836 hypothetical protein; Bacteriophage P22, anti-RecBCD protein 2 1452835 11776284 EKO11_1368 Escherichia coli KO11FL Bacteriophage P22, anti-RecBCD protein 2 YP_005277064.1 1452542 R 595495 CDS YP_005277065.1 378712172 11776285 complement(1452852..1453400) 1 NC_016902.1 KEGG: sec:SC0331 endodeoxyribonuclease; endodeoxyribonuclease 1453400 11776285 EKO11_1369 Escherichia coli KO11FL endodeoxyribonuclease YP_005277065.1 1452852 R 595495 CDS YP_005277066.1 378712173 11776286 complement(1453409..1453924) 1 NC_016902.1 KEGG: sed:SeD_A0611 single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 1453924 11776286 EKO11_1370 Escherichia coli KO11FL single-strand binding protein YP_005277066.1 1453409 R 595495 CDS YP_005277067.1 378712174 11776287 complement(1453925..1454632) 1 NC_016902.1 PFAM: Rad52/22 double-strand break repair protein; KEGG: sec:SC0333 hypothetical protein; Rad52/22 double-strand break repair protein 1454632 11776287 EKO11_1371 Escherichia coli KO11FL Rad52/22 double-strand break repair protein YP_005277067.1 1453925 R 595495 CDS YP_005277068.1 378712175 11776290 complement(1455243..1455431) 1 NC_016902.1 hypothetical protein 1455431 11776290 EKO11_1374 Escherichia coli KO11FL hypothetical protein YP_005277068.1 1455243 R 595495 CDS YP_005277069.1 378712176 11776291 complement(1455431..1455760) 1 NC_016902.1 KEGG: esa:ESA_03091 hypothetical protein; hypothetical protein 1455760 11776291 EKO11_1375 Escherichia coli KO11FL hypothetical protein YP_005277069.1 1455431 R 595495 CDS YP_005277070.1 378712177 11776292 complement(1455813..1456178) 1 NC_016902.1 KEGG: eok:G2583_0951 gene 34 protein; gene 34 protein 1456178 11776292 EKO11_1376 Escherichia coli KO11FL gene 34 protein YP_005277070.1 1455813 R 595495 CDS YP_005277071.1 378712178 11776293 complement(1456236..1456514) 1 NC_016902.1 KEGG: plu:plu2928 hypothetical protein; hypothetical protein 1456514 11776293 EKO11_1377 Escherichia coli KO11FL hypothetical protein YP_005277071.1 1456236 R 595495 CDS YP_005277072.1 378712179 11776294 complement(1456517..1456825) 1 NC_016902.1 KEGG: efe:EFER_2075 conserved hypothetical protein from phage origin; hypothetical protein 1456825 11776294 EKO11_1378 Escherichia coli KO11FL hypothetical protein YP_005277072.1 1456517 R 595495 CDS YP_005277073.1 378712180 11776295 complement(1457179..1457832) 1 NC_016902.1 KEGG: eok:G2583_0954 CI protein; PFAM: Peptidase S24/S26A/S26B, conserved region; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; phage repressor like transcriptional regulator, XRE family 1457832 11776295 EKO11_1379 Escherichia coli KO11FL phage repressor like transcriptional regulator, XRE family YP_005277073.1 1457179 R 595495 CDS YP_005277074.1 378712181 11776296 1457923..1458165 1 NC_016902.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: eok:G2583_0955 hypothetical protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1458165 11776296 EKO11_1380 Escherichia coli KO11FL helix-turn-helix domain-containing protein YP_005277074.1 1457923 D 595495 CDS YP_005277075.1 378712182 11776297 1458275..1458571 1 NC_016902.1 PFAM: CII family protein; KEGG: efe:EFER_2070 regulatory protein CII from phage origin; CII family protein 1458571 11776297 EKO11_1381 Escherichia coli KO11FL CII family protein YP_005277075.1 1458275 D 595495 CDS YP_005277076.1 378712183 11776298 1458604..1458750 1 NC_016902.1 KEGG: eoi:ECO111_2710 hypothetical protein; hypothetical protein 1458750 11776298 EKO11_1382 Escherichia coli KO11FL hypothetical protein YP_005277076.1 1458604 D 595495 CDS YP_005277077.1 378712184 11776299 1458743..1459642 1 NC_016902.1 KEGG: eoi:ECO111_2709 putative replication protein; putative replication protein 1459642 11776299 EKO11_1383 Escherichia coli KO11FL putative replication protein YP_005277077.1 1458743 D 595495 CDS YP_005277078.1 378712185 11776300 1459632..1461068 1 NC_016902.1 KEGG: sfv:SFV_0273 replication protein P; TIGRFAM: phage replicative helicase, DnaB family; PFAM: DnaB domain protein helicase domain protein; phage replicative helicase, DnaB family 1461068 11776300 EKO11_1384 Escherichia coli KO11FL phage replicative helicase, DnaB family YP_005277078.1 1459632 D 595495 CDS YP_005277079.1 378712186 11776301 1461463..1461909 1 NC_016902.1 PFAM: NinB family protein; KEGG: eoj:ECO26_3197 hypothetical protein; NinB family protein 1461909 11776301 EKO11_1385 Escherichia coli KO11FL NinB family protein YP_005277079.1 1461463 D 595495 CDS YP_005277080.1 378712187 11776302 1461906..1462433 1 NC_016902.1 KEGG: eoj:ECO26_3196 putative DNA methylase; TIGRFAM: phage N-6-adenine-methyltransferase; PFAM: DNA N-6-adenine-methyltransferase; phage N-6-adenine-methyltransferase 1462433 11776302 EKO11_1386 Escherichia coli KO11FL phage N-6-adenine-methyltransferase YP_005277080.1 1461906 D 595495 CDS YP_005277081.1 378712188 11776303 1462430..1462606 1 NC_016902.1 KEGG: eoj:ECO26_1594 hypothetical protein; manually curated; PFAM: NINE family protein; NINE family protein 1462606 11776303 EKO11_1387 Escherichia coli KO11FL NINE family protein YP_005277081.1 1462430 D 595495 CDS YP_005277082.1 378712189 11776304 1462609..1462968 1 NC_016902.1 KEGG: eoi:ECO111_0799 hypothetical protein; hypothetical protein 1462968 11776304 EKO11_1388 Escherichia coli KO11FL hypothetical protein YP_005277082.1 1462609 D 595495 CDS YP_005277083.1 378712190 11776305 1462968..1463144 1 NC_016902.1 PFAM: NinF family protein; KEGG: sek:SSPA2242 hypothetical protein; NinF family protein 1463144 11776305 EKO11_1389 Escherichia coli KO11FL NinF family protein YP_005277083.1 1462968 D 595495 CDS YP_005277084.1 378712191 11776307 1463858..1464148 1 NC_016902.1 PFAM: protein of unknown function DUF1364; KEGG: sek:SSPA2241 hypothetical protein; hypothetical protein 1464148 11776307 EKO11_1391 Escherichia coli KO11FL hypothetical protein YP_005277084.1 1463858 D 595495 CDS YP_005277085.1 378712192 11776308 1464145..1464507 1 NC_016902.1 KEGG: eoj:ECO26_0855 putative Holliday-junction resolvase; PFAM: endodeoxyribonuclease RusA; Crossover junction endodeoxyribonuclease 1464507 11776308 EKO11_1392 Escherichia coli KO11FL Crossover junction endodeoxyribonuclease YP_005277085.1 1464145 D 595495 CDS YP_005277086.1 378712193 11776309 1464504..1464692 1 NC_016902.1 PFAM: NinH family protein; KEGG: sek:SSPA2239 hypothetical protein; NinH family protein 1464692 11776309 EKO11_1393 Escherichia coli KO11FL NinH family protein YP_005277086.1 1464504 D 595495 CDS YP_005277087.1 378712194 11776310 1464689..1465312 1 NC_016902.1 PFAM: antitermination protein; KEGG: sfv:SFV_0277 putative antitermination protein; antitermination protein 1465312 11776310 EKO11_1394 Escherichia coli KO11FL antitermination protein YP_005277087.1 1464689 D 595495 CDS YP_005277088.1 378712195 11776311 1465746..1466069 1 NC_016902.1 KEGG: sfv:SFV_0278 cell lysis protein; TIGRFAM: phage holin, lambda family; PFAM: Holin phage lambda; phage holin, lambda family 1466069 11776311 EKO11_1395 Escherichia coli KO11FL phage holin, lambda family YP_005277088.1 1465746 D 595495 CDS YP_005277089.1 378712196 11779425 1466053..1466529 1 NC_016902.1 KEGG: eoj:ECO26_3358 putative endolysin; PFAM: glycoside hydrolase family 24; lysozyme 1466529 11779425 EKO11_1396 Escherichia coli KO11FL lysozyme YP_005277089.1 1466053 D 595495 CDS YP_005277090.1 378712197 11779426 1466526..1466993 1 NC_016902.1 PFAM: lysis protein; KEGG: eok:G2583_0971 bacteriophage lysis protein; lysis protein 1466993 11779426 EKO11_1397 Escherichia coli KO11FL lysis protein YP_005277090.1 1466526 D 595495 CDS YP_005277091.1 378712198 11776312 1466981..1467133 1 NC_016902.1 KEGG: eok:G2583_1727 hypothetical protein; hypothetical protein 1467133 11776312 EKO11_1398 Escherichia coli KO11FL hypothetical protein YP_005277091.1 1466981 D 595495 CDS YP_005277092.1 378712199 11776313 1467337..1467822 1 NC_016902.1 KEGG: ses:SARI_02654 hypothetical protein; hypothetical protein 1467822 11776313 EKO11_1399 Escherichia coli KO11FL hypothetical protein YP_005277092.1 1467337 D 595495 CDS YP_005277093.1 378712200 11776314 1468071..1468313 1 NC_016902.1 KEGG: sec:SC0353 hypothetical protein; hypothetical protein 1468313 11776314 EKO11_1400 Escherichia coli KO11FL hypothetical protein YP_005277093.1 1468071 D 595495 CDS YP_005277094.1 378712201 11776315 1468393..1468881 1 NC_016902.1 KEGG: efe:EFER_2046 DNA packaging protein gp3 (terminase small subunit); DNA packaging protein gp3 (terminase small subunit) 1468881 11776315 EKO11_1401 Escherichia coli KO11FL DNA packaging protein gp3 (terminase small subunit) YP_005277094.1 1468393 D 595495 CDS YP_005277095.1 378712202 11779427 1468859..1470358 1 NC_016902.1 KEGG: efe:EFER_2045 DNA packaging protein gp2 (terminase large subunit); DNA packaging protein gp2 (terminase large subunit) 1470358 11779427 EKO11_1402 Escherichia coli KO11FL DNA packaging protein gp2 (terminase large subunit) YP_005277095.1 1468859 D 595495 CDS YP_005277096.1 378712203 11776316 1470359..1472524 1 NC_016902.1 KEGG: efe:EFER_2044 portal protein (protein gp1); portal protein (protein gp1) 1472524 11776316 EKO11_1403 Escherichia coli KO11FL portal protein (protein gp1) YP_005277096.1 1470359 D 595495 CDS YP_005277097.1 378712204 11779428 1472538..1473449 1 NC_016902.1 KEGG: efe:EFER_2043 scaffolding protein (protein gp8); scaffolding protein (protein gp8) 1473449 11779428 EKO11_1404 Escherichia coli KO11FL scaffolding protein (protein gp8) YP_005277097.1 1472538 D 595495 CDS YP_005277098.1 378712205 11779429 1473449..1474744 1 NC_016902.1 KEGG: sfv:SFV_0222 putative coat protein; putative coat protein 1474744 11779429 EKO11_1405 Escherichia coli KO11FL putative coat protein YP_005277098.1 1473449 D 595495 CDS YP_005277099.1 378712206 11776317 1474789..1475043 1 NC_016902.1 KEGG: efe:EFER_2041 hypothetical protein; hypothetical protein 1475043 11776317 EKO11_1406 Escherichia coli KO11FL hypothetical protein YP_005277099.1 1474789 D 595495 CDS YP_005277100.1 378712207 11776318 1475021..1475521 1 NC_016902.1 KEGG: sfv:SFV_0224 putative DNA stabilization protein; putative DNA stabilization protein 1475521 11776318 EKO11_1407 Escherichia coli KO11FL putative DNA stabilization protein YP_005277100.1 1475021 D 595495 CDS YP_005277101.1 378712208 11776319 1475521..1476939 1 NC_016902.1 KEGG: sfv:SFV_0225 putative packaged DNA stabilization protein; putative packaged DNA stabilization protein 1476939 11776319 EKO11_1408 Escherichia coli KO11FL putative packaged DNA stabilization protein YP_005277101.1 1475521 D 595495 CDS YP_005277102.1 378712209 11776320 1476939..1477787 1 NC_016902.1 PFAM: Tropomyosin; KEGG: eoj:ECO26_3344 putative head DNA stabilization protein; Tropomyosin 1477787 11776320 EKO11_1409 Escherichia coli KO11FL Tropomyosin YP_005277102.1 1476939 D 595495 CDS YP_005277103.1 378712210 11776321 1477787..1478242 1 NC_016902.1 KEGG: eoj:ECO26_3343 putative head assembly protein; putative head assembly protein 1478242 11776321 EKO11_1410 Escherichia coli KO11FL putative head assembly protein YP_005277103.1 1477787 D 595495 CDS YP_005277104.1 378712211 11776322 1478245..1478937 1 NC_016902.1 KEGG: sfv:SFV_0228 putative DNA transfer protein; putative DNA transfer protein 1478937 11776322 EKO11_1411 Escherichia coli KO11FL putative DNA transfer protein YP_005277104.1 1478245 D 595495 CDS YP_005277105.1 378712212 11776323 1478947..1480335 1 NC_016902.1 KEGG: sec:SC0363 DNA transfer protein GP20; DNA transfer protein GP20 1480335 11776323 EKO11_1412 Escherichia coli KO11FL DNA transfer protein GP20 YP_005277105.1 1478947 D 595495 CDS YP_005277106.1 378712213 11776324 1480335..1482332 1 NC_016902.1 KEGG: seh:SeHA_C0411 hypothetical protein; hypothetical protein 1482332 11776324 EKO11_1413 Escherichia coli KO11FL hypothetical protein YP_005277106.1 1480335 D 595495 CDS YP_005277107.1 378712214 11776325 complement(1482422..1482682) 1 NC_016902.1 KEGG: eoj:ECO26_3338 putative transcriptional repressor protein; putative transcriptional repressor protein 1482682 11776325 EKO11_1414 Escherichia coli KO11FL putative transcriptional repressor protein YP_005277107.1 1482422 R 595495 CDS YP_005277108.1 378712215 11779430 1482804..1485002 1 NC_016902.1 PFAM: P22 tailspike protein head-binding; KEGG: eoi:ECO111_2662 putative tail spike protein; P22 tailspike protein head-binding protein 1485002 11779430 EKO11_1415 Escherichia coli KO11FL P22 tailspike protein head-binding protein YP_005277108.1 1482804 D 595495 CDS YP_005277109.1 378712216 11776326 complement(1485035..1486162) 1 NC_016902.1 PFAM: acyltransferase 3; KEGG: efe:EFER_0626 hypothetical protein; acyltransferase 3 1486162 11776326 EKO11_1416 Escherichia coli KO11FL acyltransferase 3 YP_005277109.1 1485035 R 595495 CDS YP_005277110.1 378712217 11776327 complement(1486408..1487565) 1 NC_016902.1 PFAM: integrase family protein; KEGG: eoj:ECO26_3335 putative integrase; integrase family protein 1487565 11776327 EKO11_1417 Escherichia coli KO11FL integrase family protein YP_005277110.1 1486408 R 595495 CDS YP_005277111.1 378712218 11776329 complement(1487877..1488809) 1 NC_016902.1 PFAM: formate/nitrite transporter; KEGG: sdy:SDY_2551 putative transport; formate/nitrite transporter 1488809 11776329 EKO11_1418 Escherichia coli KO11FL formate/nitrite transporter YP_005277111.1 1487877 R 595495 CDS YP_005277112.1 378712219 11776330 1488907..1489077 1 NC_016902.1 manually curated; KEGG: ebd:ECBD_1310 hypothetical protein; hypothetical protein 1489077 11776330 EKO11_1419 Escherichia coli KO11FL hypothetical protein YP_005277112.1 1488907 D 595495 CDS YP_005277113.1 378712220 11776331 1489103..1489858 1 NC_016902.1 PFAM: VacJ family lipoprotein; KEGG: sdy:SDY_2550 lipoprotein precursor; VacJ family lipoprotein 1489858 11776331 EKO11_1420 Escherichia coli KO11FL VacJ family lipoprotein YP_005277113.1 1489103 D 595495 CDS YP_005277114.1 378712221 11776332 complement(1490040..1491098) 1 NC_016902.1 KEGG: eoi:ECO111_3092 hypothetical protein; hypothetical protein 1491098 11776332 EKO11_1421 Escherichia coli KO11FL hypothetical protein YP_005277114.1 1490040 R 595495 CDS YP_005277115.1 378712222 11776333 complement(1491463..1492803) 1 NC_016902.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: ssn:SSON_2400 long-chain fatty acid outer membrane transporter; aromatic hydrocarbon degradation membrane protein 1492803 11776333 EKO11_1422 Escherichia coli KO11FL aromatic hydrocarbon degradation membrane protein YP_005277115.1 1491463 R 595495 CDS YP_005277116.1 378712223 11779431 1493175..1493459 1 NC_016902.1 PFAM: Conserved hypothetical protein CHP00743; KEGG: eoh:ECO103_2807 hypothetical protein; hypothetical protein 1493459 11779431 EKO11_1423 Escherichia coli KO11FL hypothetical protein YP_005277116.1 1493175 D 595495 CDS YP_005277117.1 378712224 11779432 1493639..1494949 1 NC_016902.1 TIGRFAM: acetyl-CoA C-acyltransferase FadI; acetyl-CoA acetyltransferase; KEGG: eoi:ECO111_3089 3-ketoacyl-CoA thiolase; PFAM: Thiolase-like; acetyl-CoA C-acyltransferase FadI 1494949 11779432 EKO11_1424 Escherichia coli KO11FL acetyl-CoA C-acyltransferase FadI YP_005277117.1 1493639 D 595495 CDS YP_005277118.1 378712225 11776334 1494949..1497093 1 NC_016902.1 KEGG: eoh:ECO103_2805 multifunctional fatty acid oxidation complex subunit alpha; TIGRFAM: fatty acid oxidation complex, alpha subunit FadJ; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; fatty acid oxidation complex subunit FadJ 1497093 11776334 EKO11_1425 Escherichia coli KO11FL fatty acid oxidation complex subunit FadJ YP_005277118.1 1494949 D 595495 CDS YP_005277119.1 378712226 11776335 1497296..1497781 1 NC_016902.1 KEGG: sbc:SbBS512_E2719 phosphohistidine phosphatase; TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; phosphohistidine phosphatase, SixA 1497781 11776335 EKO11_1426 Escherichia coli KO11FL phosphohistidine phosphatase, SixA YP_005277119.1 1497296 D 595495 CDS YP_005277120.1 378712227 11776336 1498456..1499019 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eoh:ECO103_2803 fimbrial-like protein; fimbrial protein domain-containing protein 1499019 11776336 EKO11_1427 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005277120.1 1498456 D 595495 CDS YP_005277121.1 378712228 11776337 1499101..1501743 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoh:ECO103_2802 putative outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 1501743 11776337 EKO11_1428 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005277121.1 1499101 D 595495 CDS YP_005277122.1 378712229 11776338 1501763..1502515 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: eoh:ECO103_2801 putative chaperone; Pili assembly chaperone, N-terminal protein 1502515 11776338 EKO11_1429 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005277122.1 1501763 D 595495 CDS YP_005277123.1 378712230 11776339 1502532..1503038 1 NC_016902.1 KEGG: eoh:ECO103_2800 putative fimbrial protein; putative fimbrial protein 1503038 11776339 EKO11_1430 Escherichia coli KO11FL putative fimbrial protein YP_005277123.1 1502532 D 595495 CDS YP_005277124.1 378712231 11776340 1503035..1503505 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eoh:ECO103_2799 putative fimbrial subunit protein; fimbrial protein domain-containing protein 1503505 11776340 EKO11_1431 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005277124.1 1503035 D 595495 CDS YP_005277125.1 378712232 11776341 1503502..1504026 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ssn:SSON_2391 putative minor fimbrial subunit; fimbrial protein domain-containing protein 1504026 11776341 EKO11_1432 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005277125.1 1503502 D 595495 CDS YP_005277126.1 378712233 11776342 1504118..1504885 1 NC_016902.1 KEGG: sfv:SFV_2401 hypothetical protein; hypothetical protein 1504885 11776342 EKO11_1433 Escherichia coli KO11FL hypothetical protein YP_005277126.1 1504118 D 595495 CDS YP_005277127.1 378712234 11776343 complement(1505007..1505558) 1 NC_016902.1 KEGG: sbc:SbBS512_E2709 hypothetical protein; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; Smr protein/MutS2 1505558 11776343 EKO11_1434 Escherichia coli KO11FL Smr protein/MutS2 YP_005277127.1 1505007 R 595495 CDS YP_005277128.1 378712235 11776344 1505724..1506656 1 NC_016902.1 KEGG: sdy:SDY_2530 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 1506656 11776344 EKO11_1435 Escherichia coli KO11FL protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific YP_005277128.1 1505724 D 595495 CDS YP_005277129.1 378712236 11776345 1506691..1507776 1 NC_016902.1 TIGRFAM: chorismate synthase; KEGG: ssn:SSON_2387 chorismate synthase; PFAM: chorismate synthase; chorismate synthase 1507776 11776345 EKO11_1436 Escherichia coli KO11FL chorismate synthase YP_005277129.1 1506691 D 595495 CDS YP_005277130.1 378712237 11776346 1507780..1508604 1 NC_016902.1 PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: sbc:SbBS512_E2706 penicillin-insensitive murein endopeptidase; peptidase U6 penicillin-insensitive murein endopeptidase 1508604 11776346 EKO11_1437 Escherichia coli KO11FL peptidase U6 penicillin-insensitive murein endopeptidase YP_005277130.1 1507780 D 595495 CDS YP_005277131.1 378712238 11776347 1508604..1509413 1 NC_016902.1 PFAM: protein of unknown function DUF81; KEGG: sbc:SbBS512_E2705 hypothetical protein; hypothetical protein 1509413 11776347 EKO11_1438 Escherichia coli KO11FL hypothetical protein YP_005277131.1 1508604 D 595495 CDS YP_005277132.1 378712239 11776348 1509413..1509961 1 NC_016902.1 PFAM: protein of unknown function DUF462; KEGG: eoh:ECO103_2791 hypothetical protein; hypothetical protein 1509961 11776348 EKO11_1439 Escherichia coli KO11FL hypothetical protein YP_005277132.1 1509413 D 595495 CDS YP_005277133.1 378712240 11776349 1509995..1510273 1 NC_016902.1 PFAM: YfcL protein; KEGG: sdy:SDY_2524 hypothetical protein; hypothetical protein 1510273 11776349 EKO11_1440 Escherichia coli KO11FL hypothetical protein YP_005277133.1 1509995 D 595495 CDS YP_005277134.1 378712241 11776350 complement(1510394..1512460) 1 NC_016902.1 manually curated; TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; KEGG: eoh:ECO103_2788 5-methylaminomethyl-2-thiouridine methyltransferase; PFAM: protein of unknown function DUF752; FAD dependent oxidoreductase; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC 1512460 11776350 EKO11_1441 Escherichia coli KO11FL tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC YP_005277134.1 1510394 R 595495 CDS YP_005277135.1 378712242 11776351 1512559..1513779 1 NC_016902.1 PFAM: Beta-ketoacyl synthase; KEGG: sbo:SBO_2360 3-oxoacyl-(acyl carrier protein) synthase I; Beta-ketoacyl synthase 1513779 11776351 EKO11_1442 Escherichia coli KO11FL Beta-ketoacyl synthase YP_005277135.1 1512559 D 595495 CDS YP_005277136.1 378712243 11779433 1514090..1515268 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoh:ECO103_2786 hypothetical protein; major facilitator superfamily protein 1515268 11779433 EKO11_1443 Escherichia coli KO11FL major facilitator superfamily protein YP_005277136.1 1514090 D 595495 CDS YP_005277137.1 378712244 11776352 complement(1515265..1516260) 1 NC_016902.1 KEGG: sbo:SBO_2358 flagella biosynthesis regulator; flagella biosynthesis regulator protein 1516260 11776352 EKO11_1444 Escherichia coli KO11FL flagella biosynthesis regulator protein YP_005277137.1 1515265 R 595495 CDS YP_005277138.1 378712245 11776353 1516359..1517495 1 NC_016902.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sbc:SbBS512_E2698 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 1517495 11776353 EKO11_1445 Escherichia coli KO11FL D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_005277138.1 1516359 D 595495 CDS YP_005277139.1 378712246 11776354 1517561..1518574 1 NC_016902.1 PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; KEGG: sbc:SbBS512_E2697 putative semialdehyde dehydrogenase; SMART: Semialdehyde dehydrogenase NAD - binding; Aspartate-semialdehyde dehydrogenase 1518574 11776354 EKO11_1446 Escherichia coli KO11FL Aspartate-semialdehyde dehydrogenase YP_005277139.1 1517561 D 595495 CDS YP_005277140.1 378712247 11776355 1518574..1519386 1 NC_016902.1 KEGG: sdy:SDY_2517 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase A 1519386 11776355 EKO11_1447 Escherichia coli KO11FL tRNA pseudouridine synthase A YP_005277140.1 1518574 D 595495 CDS YP_005277141.1 378712248 11776356 1519469..1520128 1 NC_016902.1 PFAM: SNARE associated Golgi protein; KEGG: ssn:SSON_2375 hypothetical protein; hypothetical protein 1520128 11776356 EKO11_1448 Escherichia coli KO11FL hypothetical protein YP_005277141.1 1519469 D 595495 CDS YP_005277142.1 378712249 11776357 1520284..1521198 1 NC_016902.1 KEGG: efe:EFER_0847 acetyl-CoA carboxylase subunit beta; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: carboxyl transferase; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1521198 11776357 EKO11_1449 Escherichia coli KO11FL acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_005277142.1 1520284 D 595495 CDS YP_005277143.1 378712250 11776358 1521268..1522536 1 NC_016902.1 KEGG: sfv:SFV_2384 bifunctional folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1522536 11776358 EKO11_1450 Escherichia coli KO11FL bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_005277143.1 1521268 D 595495 CDS YP_005277144.1 378712251 11776359 1522526..1523188 1 NC_016902.1 PFAM: Sporulation domain-containing protein; KEGG: eoh:ECO103_2778 hypothetical protein; sporulation domain-containing protein 1523188 11776359 EKO11_1451 Escherichia coli KO11FL sporulation domain-containing protein YP_005277144.1 1522526 D 595495 CDS YP_005277145.1 378712252 11776360 1523447..1523935 1 NC_016902.1 PFAM: Colicin V production protein; KEGG: eok:G2583_2850 CvpA protein; colicin V production protein 1523935 11776360 EKO11_1452 Escherichia coli KO11FL colicin V production protein YP_005277145.1 1523447 D 595495 CDS YP_005277146.1 378712253 11776361 1523972..1525489 1 NC_016902.1 KEGG: sbc:SbBS512_E2690 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; amidophosphoribosyltransferase 1525489 11776361 EKO11_1453 Escherichia coli KO11FL amidophosphoribosyltransferase YP_005277146.1 1523972 D 595495 CDS YP_005277147.1 378712254 11776362 1525584..1526153 1 NC_016902.1 KEGG: sbc:SbBS512_E2689 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1526153 11776362 EKO11_1454 Escherichia coli KO11FL 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005277147.1 1525584 D 595495 CDS YP_005277148.1 378712255 11776363 1526419..1527201 1 NC_016902.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: sbc:SbBS512_E2688 lysine-arginine-ornithine-binding periplasmic protein; SMART: extracellular solute-binding protein family 3; cationic amino acid ABC transporter substrate-binding protein 1527201 11776363 EKO11_1455 Escherichia coli KO11FL cationic amino acid ABC transporter substrate-binding protein YP_005277148.1 1526419 D 595495 CDS YP_005277149.1 378712256 11776364 1527422..1528204 1 NC_016902.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: sbc:SbBS512_E2687 histidine ABC transporter, periplasmic histidine-binding protein; SMART: extracellular solute-binding protein family 3; cationic amino acid ABC transporter substrate-binding protein 1528204 11776364 EKO11_1456 Escherichia coli KO11FL cationic amino acid ABC transporter substrate-binding protein YP_005277149.1 1527422 D 595495 CDS YP_005277150.1 378712257 11776365 1528294..1528980 1 NC_016902.1 KEGG: sdy:SDY_2507 histidine transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1528980 11776365 EKO11_1457 Escherichia coli KO11FL polar amino acid ABC transporter inner membrane subunit YP_005277150.1 1528294 D 595495 CDS YP_005277151.1 378712258 11776366 1528977..1529693 1 NC_016902.1 KEGG: sdy:SDY_2506 histidine transport, membrane protein M; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1529693 11776366 EKO11_1458 Escherichia coli KO11FL polar amino acid ABC transporter inner membrane subunit YP_005277151.1 1528977 D 595495 CDS YP_005277152.1 378712259 11776367 1529701..1530474 1 NC_016902.1 KEGG: sbc:SbBS512_E2684 histidine/lysine/arginine/ornithine transporter subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1530474 11776367 EKO11_1459 Escherichia coli KO11FL ABC transporter YP_005277152.1 1529701 D 595495 CDS YP_005277153.1 378712260 11776368 1530671..1531561 1 NC_016902.1 PFAM: transposase YhgA family protein; KEGG: eoi:ECO111_3053 hypothetical protein; transposase YhgA family protein 1531561 11776368 EKO11_1460 Escherichia coli KO11FL transposase YhgA family protein YP_005277153.1 1530671 D 595495 CDS YP_005277154.1 378712261 11776369 complement(1531609..1532502) 1 NC_016902.1 PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; KEGG: ebd:ECBD_1355 domain of unknown function DUF1731; hypothetical protein 1532502 11776369 EKO11_1461 Escherichia coli KO11FL hypothetical protein YP_005277154.1 1531609 R 595495 CDS YP_005277155.1 378712262 11776370 complement(1532523..1532885) 1 NC_016902.1 PFAM: dihydroneopterin aldolase; KEGG: sdy:SDY_2500 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; dihydroneopterin aldolase 1532885 11776370 EKO11_1462 Escherichia coli KO11FL dihydroneopterin aldolase YP_005277155.1 1532523 R 595495 CDS YP_005277156.1 378712263 11776371 complement(1532942..1533589) 1 NC_016902.1 PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E2678 glutathione S-transferase; glutathione S-transferase 1533589 11776371 EKO11_1463 Escherichia coli KO11FL glutathione S-transferase YP_005277156.1 1532942 R 595495 CDS YP_005277157.1 378712264 11776372 1533725..1534369 1 NC_016902.1 PFAM: Glutathione S-transferase domain; KEGG: eoh:ECO103_2765 putative enzyme; glutathione S-transferase 1534369 11776372 EKO11_1464 Escherichia coli KO11FL glutathione S-transferase YP_005277157.1 1533725 D 595495 CDS YP_005277158.1 378712265 11779434 1534425..1534976 1 NC_016902.1 KEGG: sbc:SbBS512_E2676 phosphodiesterase; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; phosphodiesterase 1534976 11779434 EKO11_1465 Escherichia coli KO11FL phosphodiesterase YP_005277158.1 1534425 D 595495 CDS YP_005277159.1 378712266 11776373 1535034..1535576 1 NC_016902.1 PFAM: NUDIX hydrolase; KEGG: sbc:SbBS512_E2675 hydrolase, NUDIX family protein; NUDIX hydrolase 1535576 11776373 EKO11_1466 Escherichia coli KO11FL NUDIX hydrolase YP_005277159.1 1535034 D 595495 CDS YP_005277160.1 378712267 11776374 complement(1535609..1537129) 1 NC_016902.1 PFAM: C4-dicarboxylate anaerobic carrier-like; KEGG: eoh:ECO103_2762 hypothetical protein; C4-dicarboxylate anaerobic carrier-like protein 1537129 11776374 EKO11_1467 Escherichia coli KO11FL C4-dicarboxylate anaerobic carrier-like protein YP_005277160.1 1535609 R 595495 CDS YP_005277161.1 378712268 11776375 complement(1537319..1539463) 1 NC_016902.1 KEGG: sbc:SbBS512_E2673 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; phosphate acetyltransferase 1539463 11776375 EKO11_1468 Escherichia coli KO11FL phosphate acetyltransferase YP_005277161.1 1537319 R 595495 CDS YP_005277162.1 378712269 11776376 complement(1539538..1540740) 1 NC_016902.1 KEGG: sbc:SbBS512_E2672 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 1540740 11776376 EKO11_1469 Escherichia coli KO11FL acetate kinase YP_005277162.1 1539538 R 595495 CDS YP_005277163.1 378712270 11776377 1541078..1541533 1 NC_016902.1 PFAM: protein of unknown function DUF412; KEGG: sdy:SDY_2491 hypothetical protein; hypothetical protein 1541533 11776377 EKO11_1470 Escherichia coli KO11FL hypothetical protein YP_005277163.1 1541078 D 595495 CDS YP_005277164.1 378712271 11776378 1541616..1542110 1 NC_016902.1 PFAM: YfbU family protein; KEGG: sdy:SDY_2490 hypothetical protein; YfbU family protein 1542110 11776378 EKO11_1471 Escherichia coli KO11FL YfbU family protein YP_005277164.1 1541616 D 595495 CDS YP_005277165.1 378712272 11776379 1542121..1542771 1 NC_016902.1 KEGG: eoh:ECO103_2757 putative phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 1542771 11776379 EKO11_1472 Escherichia coli KO11FL HAD-superfamily hydrolase YP_005277165.1 1542121 D 595495 CDS YP_005277166.1 378712273 11776380 1542858..1544690 1 NC_016902.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: ssn:SSON_2349 putative transport protein; citrate transporter 1544690 11776380 EKO11_1473 Escherichia coli KO11FL citrate transporter YP_005277166.1 1542858 D 595495 CDS YP_005277167.1 378712274 11779435 complement(1544749..1545348) 1 NC_016902.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ebd:ECBD_1368 hypothetical protein; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1545348 11779435 EKO11_1474 Escherichia coli KO11FL metal dependent phosphohydrolase YP_005277167.1 1544749 R 595495 CDS YP_005277168.1 378712275 11776381 complement(1545432..1546649) 1 NC_016902.1 PFAM: aminotransferase class I and II; KEGG: sbc:SbBS512_E2666 aminotransferase AlaT; class I and II aminotransferase 1546649 11776381 EKO11_1475 Escherichia coli KO11FL class I and II aminotransferase YP_005277168.1 1545432 R 595495 CDS YP_005277169.1 378712276 11776382 complement(1547075..1547329) 1 NC_016902.1 manually curated; KEGG: ebd:ECBD_1370 hypothetical protein; hypothetical protein 1547329 11776382 EKO11_1476 Escherichia coli KO11FL hypothetical protein YP_005277169.1 1547075 R 595495 CDS YP_005277170.1 378712277 11776383 1547569..1548507 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbc:SbBS512_E2665 transcriptional regulator LrhA; LysR family transcriptional regulator 1548507 11776383 EKO11_1477 Escherichia coli KO11FL LysR family transcriptional regulator YP_005277170.1 1547569 D 595495 CDS YP_005277171.1 378712278 11776384 complement(1548711..1548875) 1 NC_016902.1 KEGG: ebd:ECBD_1372 hypothetical protein; hypothetical protein 1548875 11776384 EKO11_1478 Escherichia coli KO11FL hypothetical protein YP_005277171.1 1548711 R 595495 CDS YP_005277172.1 378712279 11776385 1549138..1549581 1 NC_016902.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: sdy:SDY_2484 NADH dehydrogenase subunit A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 1549581 11776385 EKO11_1479 Escherichia coli KO11FL NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_005277172.1 1549138 D 595495 CDS YP_005277173.1 378712280 11779436 1549597..1550259 1 NC_016902.1 TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: sbc:SbBS512_E2663 NADH dehydrogenase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit B 1550259 11779436 EKO11_1480 Escherichia coli KO11FL NADH-quinone oxidoreductase subunit B YP_005277173.1 1549597 D 595495 CDS YP_005277174.1 378712281 11776386 1550353..1552155 1 NC_016902.1 KEGG: sdy:SDY_2482 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; TIGRFAM: NADH dehydrogenase I, D subunit; NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH dehydrogenase I subunit D 1552155 11776386 EKO11_1481 Escherichia coli KO11FL NADH dehydrogenase I subunit D YP_005277174.1 1550353 D 595495 CDS YP_005277175.1 378712282 11776387 1552158..1552658 1 NC_016902.1 KEGG: sbc:SbBS512_E2661 NADH dehydrogenase subunit E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; NADH-quinone oxidoreductase subunit E 1552658 11776387 EKO11_1482 Escherichia coli KO11FL NADH-quinone oxidoreductase subunit E YP_005277175.1 1552158 D 595495 CDS YP_005277176.1 378712283 11776388 1552655..1553992 1 NC_016902.1 TIGRFAM: NADH-quinone oxidoreductase, F subunit; KEGG: sbc:SbBS512_E2660 NADH dehydrogenase I subunit F; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH-quinone oxidoreductase subunit F 1553992 11776388 EKO11_1483 Escherichia coli KO11FL NADH-quinone oxidoreductase subunit F YP_005277176.1 1552655 D 595495 CDS YP_005277177.1 378712284 11776389 1554045..1556771 1 NC_016902.1 KEGG: ssn:SSON_2340 NADH dehydrogenase subunit G; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; NADH-quinone oxidoreductase subunit G 1556771 11776389 EKO11_1484 Escherichia coli KO11FL NADH-quinone oxidoreductase subunit G YP_005277177.1 1554045 D 595495 CDS YP_005277178.1 378712285 11779437 1556768..1557745 1 NC_016902.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sdy:SDY_2478 NADH dehydrogenase subunit H; respiratory-chain NADH dehydrogenase subunit 1 1557745 11779437 EKO11_1485 Escherichia coli KO11FL respiratory-chain NADH dehydrogenase subunit 1 YP_005277178.1 1556768 D 595495 CDS YP_005277179.1 378712286 11776390 1557760..1558302 1 NC_016902.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; KEGG: sbc:SbBS512_E2657 NADH dehydrogenase subunit I; NADH-quinone oxidoreductase subunit I 1558302 11776390 EKO11_1486 Escherichia coli KO11FL NADH-quinone oxidoreductase subunit I YP_005277179.1 1557760 D 595495 CDS YP_005277180.1 378712287 11776391 1558314..1558868 1 NC_016902.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: sdy:SDY_2476 NADH dehydrogenase subunit J; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 1558868 11776391 EKO11_1487 Escherichia coli KO11FL NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_005277180.1 1558314 D 595495 CDS YP_005277181.1 378712288 11776392 1558865..1559167 1 NC_016902.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: cro:ROD_26811 NADH-quinone oxidoreductase chain K; NADH-ubiquinone oxidoreductase chain 4L 1559167 11776392 EKO11_1488 Escherichia coli KO11FL NADH-ubiquinone oxidoreductase chain 4L YP_005277181.1 1558865 D 595495 CDS YP_005277182.1 378712289 11776393 1559164..1561005 1 NC_016902.1 KEGG: eok:G2583_2815 NADH-quinone oxidoreductase, L subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit L 1561005 11776393 EKO11_1489 Escherichia coli KO11FL proton-translocating NADH-quinone oxidoreductase subunit L YP_005277182.1 1559164 D 595495 CDS YP_005277183.1 378712290 11779438 1561169..1562698 1 NC_016902.1 KEGG: ebd:ECBD_1384 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1562698 11779438 EKO11_1490 Escherichia coli KO11FL proton-translocating NADH-quinone oxidoreductase subunit M YP_005277183.1 1561169 D 595495 CDS YP_005277184.1 378712291 11776394 1562705..1564162 1 NC_016902.1 KEGG: ebd:ECBD_1385 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain N 1564162 11776394 EKO11_1491 Escherichia coli KO11FL proton-translocating NADH-quinone oxidoreductase, chain N YP_005277184.1 1562705 D 595495 CDS YP_005277185.1 378712292 11776395 complement(1564229..1564732) 1 NC_016902.1 PFAM: Domain of unknown function DUF1877; KEGG: sdy:SDY_2471 hypothetical protein; hypothetical protein 1564732 11776395 EKO11_1492 Escherichia coli KO11FL hypothetical protein YP_005277185.1 1564229 R 595495 CDS YP_005277186.1 378712293 11776397 complement(1565854..1567071) 1 NC_016902.1 PFAM: peptidase C48 SUMO/Sentrin/Ubl1; KEGG: eoj:ECO26_3260 deubiquitinase; peptidase C48 SUMO/Sentrin/Ubl1 1567071 11776397 EKO11_1494 Escherichia coli KO11FL peptidase C48 SUMO/Sentrin/Ubl1 YP_005277186.1 1565854 R 595495 CDS YP_005277187.1 378712294 11779439 complement(1567262..1568179) 1 NC_016902.1 TIGRFAM: ribonuclease BN; ribonuclease Z; KEGG: sbo:SBO_2305 ribonuclease Z; ribonuclease BN 1568179 11779439 EKO11_1495 Escherichia coli KO11FL ribonuclease BN YP_005277187.1 1567262 R 595495 CDS YP_005277188.1 378712295 11776398 1568244..1568705 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbo:SBO_2304 hypothetical protein; N-acetyltransferase GCN5 1568705 11776398 EKO11_1496 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005277188.1 1568244 D 595495 CDS YP_005277189.1 378712296 11776399 1568760..1569065 1 NC_016902.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_2462 hypothetical protein; hypothetical protein 1569065 11776399 EKO11_1497 Escherichia coli KO11FL hypothetical protein YP_005277189.1 1568760 D 595495 CDS YP_005277190.1 378712297 11776400 1569144..1570439 1 NC_016902.1 KEGG: eoi:ECO111_3016 isochorismate synthase 2; TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; isochorismate synthase 1570439 11776400 EKO11_1498 Escherichia coli KO11FL isochorismate synthase YP_005277190.1 1569144 D 595495 CDS YP_005277191.1 378712298 11776401 1570528..1572198 1 NC_016902.1 TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; KEGG: ebd:ECBD_1394 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 1572198 11776401 EKO11_1499 Escherichia coli KO11FL 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase YP_005277191.1 1570528 D 595495 CDS YP_005277192.1 378712299 11776402 1572195..1572953 1 NC_016902.1 KEGG: eoi:ECO111_3014 acyl-CoA thioester hydrolase YfbB; PFAM: alpha/beta hydrolase fold; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 1572953 11776402 EKO11_1500 Escherichia coli KO11FL 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase YP_005277192.1 1572195 D 595495 CDS YP_005277193.1 378712300 11779440 1572968..1573825 1 NC_016902.1 KEGG: efe:EFER_0906 naphthoate synthase; TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; naphthoate synthase 1573825 11779440 EKO11_1501 Escherichia coli KO11FL naphthoate synthase YP_005277193.1 1572968 D 595495 CDS YP_005277194.1 378712301 11776403 1573825..1574787 1 NC_016902.1 TIGRFAM: o-succinylbenzoic acid (OSB) synthetase; KEGG: eoh:ECO103_2728 O-succinylbenzoate synthase; PFAM: Mandelate racemase/muconate lactonizing protein; o-succinylbenzoic acid (OSB) synthetase 1574787 11776403 EKO11_1502 Escherichia coli KO11FL o-succinylbenzoic acid (OSB) synthetase YP_005277194.1 1573825 D 595495 CDS YP_005277195.1 378712302 11776404 1574784..1576139 1 NC_016902.1 KEGG: eoi:ECO111_3011 O-succinylbenzoic acid--CoA ligase; TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; o-succinylbenzoate--CoA ligase 1576139 11776404 EKO11_1503 Escherichia coli KO11FL o-succinylbenzoate--CoA ligase YP_005277195.1 1574784 D 595495 CDS YP_005277196.1 378712303 11776405 1576249..1576515 1 NC_016902.1 KEGG: sbo:SBO_2296 polymyxin resistance protein B; polymyxin resistance protein B 1576515 11776405 EKO11_1504 Escherichia coli KO11FL polymyxin resistance protein B YP_005277196.1 1576249 D 595495 CDS YP_005277197.1 378712304 11779441 complement(1576509..1576895) 1 NC_016902.1 KEGG: sbo:SBO_2295 hypothetical protein; hypothetical protein 1576895 11779441 EKO11_1505 Escherichia coli KO11FL hypothetical protein YP_005277197.1 1576509 R 595495 CDS YP_005277198.1 378712305 11776406 complement(1576895..1577230) 1 NC_016902.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbc:SbBS512_E2634 multidrug resistance protein, SMR family; hypothetical protein 1577230 11776406 EKO11_1506 Escherichia coli KO11FL hypothetical protein YP_005277198.1 1576895 R 595495 CDS YP_005277199.1 378712306 11776407 complement(1577227..1578879) 1 NC_016902.1 PFAM: glycosyl transferase family 39; KEGG: eoi:ECO111_3007 4-amino-4-deoxy-L-arabinose transferase; glycosyl transferase family protein 1578879 11776407 EKO11_1507 Escherichia coli KO11FL glycosyl transferase family protein YP_005277199.1 1577227 R 595495 CDS YP_005277200.1 378712307 11776408 complement(1578879..1579769) 1 NC_016902.1 PFAM: polysaccharide deacetylase; KEGG: ssn:SSON_2317 hypothetical protein; polysaccharide deacetylase 1579769 11776408 EKO11_1508 Escherichia coli KO11FL polysaccharide deacetylase YP_005277200.1 1578879 R 595495 CDS YP_005277201.1 378712308 11776409 complement(1579766..1581748) 1 NC_016902.1 PFAM: NAD-dependent epimerase/dehydratase; formyl transferase domain protein; KEGG: eok:G2583_2795 bifunctional polymyxin resistance protein ArnA; NAD-dependent epimerase/dehydratase 1581748 11776409 EKO11_1509 Escherichia coli KO11FL NAD-dependent epimerase/dehydratase YP_005277201.1 1579766 R 595495 CDS YP_005277202.1 378712309 11779442 complement(1581748..1582716) 1 NC_016902.1 PFAM: glycosyl transferase family 2; KEGG: sbo:SBO_2291 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; family 2 glycosyl transferase 1582716 11779442 EKO11_1510 Escherichia coli KO11FL family 2 glycosyl transferase YP_005277202.1 1581748 R 595495 CDS YP_005277203.1 378712310 11776410 complement(1582720..1583877) 1 NC_016902.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ebr:ECB_02179 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1583877 11776410 EKO11_1511 Escherichia coli KO11FL DegT/DnrJ/EryC1/StrS aminotransferase YP_005277203.1 1582720 R 595495 CDS YP_005277204.1 378712311 11776411 1584110..1584769 1 NC_016902.1 KEGG: sfv:SFV_2322 protein induced by aluminum; manually curated; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 1584769 11776411 EKO11_1512 Escherichia coli KO11FL phosphoglycerate mutase YP_005277204.1 1584110 D 595495 CDS YP_005277205.1 378712312 11776412 complement(1584808..1585233) 1 NC_016902.1 PFAM: NUDIX hydrolase; KEGG: ssn:SSON_2312 hypothetical protein; NUDIX hydrolase 1585233 11776412 EKO11_1513 Escherichia coli KO11FL NUDIX hydrolase YP_005277205.1 1584808 R 595495 CDS YP_005277206.1 378712313 11776413 1585512..1586054 1 NC_016902.1 PFAM: YfaZ family protein; KEGG: eoi:ECO111_2999 putative outer membrane porin protein; hypothetical protein 1586054 11776413 EKO11_1514 Escherichia coli KO11FL hypothetical protein YP_005277206.1 1585512 D 595495 CDS YP_005277207.1 378712314 11776414 1586154..1587356 1 NC_016902.1 KEGG: eoh:ECO103_2715 competence damage-inducible protein A; TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; competence/damage-inducible protein CinA 1587356 11776414 EKO11_1515 Escherichia coli KO11FL competence/damage-inducible protein CinA YP_005277207.1 1586154 D 595495 CDS YP_005277208.1 378712315 11776416 complement(1587922..1588824) 1 NC_016902.1 PFAM: transposase YhgA family protein; KEGG: sbc:SbBS512_E2627 hypothetical protein; transposase YhgA family protein 1588824 11776416 EKO11_1517 Escherichia coli KO11FL transposase YhgA family protein YP_005277208.1 1587922 R 595495 CDS YP_005277209.1 378712316 11776417 complement(1589018..1590208) 1 NC_016902.1 KEGG: eoh:ECO103_2712 sn-glycerol-3-phosphate dehydrogenase subunit C; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; glycerol-3-phosphate dehydrogenase 1590208 11776417 EKO11_1518 Escherichia coli KO11FL glycerol-3-phosphate dehydrogenase YP_005277209.1 1589018 R 595495 CDS YP_005277210.1 378712317 11776418 complement(1590205..1591464) 1 NC_016902.1 TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; KEGG: ssn:SSON_2303 anaerobic glycerol-3-phosphate dehydrogenase subunit B; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; glycerol-3-phosphate dehydrogenase 1591464 11776418 EKO11_1519 Escherichia coli KO11FL glycerol-3-phosphate dehydrogenase YP_005277210.1 1590205 R 595495 CDS YP_005277211.1 378712318 11776419 complement(1591454..1593082) 1 NC_016902.1 KEGG: sbc:SbBS512_E2623 sn-glycerol-3-phosphate dehydrogenase subunit A; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; glycerol-3-phosphate dehydrogenase 1593082 11776419 EKO11_1520 Escherichia coli KO11FL glycerol-3-phosphate dehydrogenase YP_005277211.1 1591454 R 595495 CDS YP_005277212.1 378712319 11776420 1593355..1594713 1 NC_016902.1 KEGG: sfx:S2455 sn-glycerol-3-phosphate transporter; TIGRFAM: glycerol-3-phosphate transporter; phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1; glycerol-3-phosphate transporter 1594713 11776420 EKO11_1521 Escherichia coli KO11FL glycerol-3-phosphate transporter YP_005277212.1 1593355 D 595495 CDS YP_005277213.1 378712320 11776421 1594718..1595794 1 NC_016902.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: eok:G2583_2779 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 1595794 11776421 EKO11_1522 Escherichia coli KO11FL glycerophosphoryl diester phosphodiesterase YP_005277213.1 1594718 D 595495 CDS YP_005277214.1 378712321 11776423 1596256..1596906 1 NC_016902.1 KEGG: sfv:SFV_2310 hypothetical protein; hypothetical protein 1596906 11776423 EKO11_1524 Escherichia coli KO11FL hypothetical protein YP_005277214.1 1596256 D 595495 CDS YP_005277215.1 378712322 11776424 complement(1596960..1597214) 1 NC_016902.1 PFAM: ferredoxin; KEGG: sbc:SbBS512_E2616 2Fe-2S ferredoxin YfaE; ferredoxin 1597214 11776424 EKO11_1525 Escherichia coli KO11FL ferredoxin YP_005277215.1 1596960 R 595495 CDS YP_005277216.1 378712323 11776425 complement(1597214..1598344) 1 NC_016902.1 KEGG: ssn:SSON_2294 ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase; ribonucleoside-diphosphate reductase 1598344 11776425 EKO11_1526 Escherichia coli KO11FL ribonucleoside-diphosphate reductase YP_005277216.1 1597214 R 595495 CDS YP_005277217.1 378712324 11776426 complement(1598491..1600776) 1 NC_016902.1 KEGG: eoh:ECO103_2703 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ATP-cone domain protein; ribonucleoside-diphosphate reductase subunit alpha 1600776 11776426 EKO11_1527 Escherichia coli KO11FL ribonucleoside-diphosphate reductase subunit alpha YP_005277217.1 1598491 R 595495 CDS YP_005277218.1 378712325 11776427 1601466..1605206 1 NC_016902.1 KEGG: eoh:ECO103_2702 adhesin; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; polymorphic outer membrane protein; PFAM: Autotransporter beta- domain protein; Pertactin; Polymorphic membrane protein Chlamydia; outer membrane autotransporter barrel domain-containing protein 1605206 11776427 EKO11_1528 Escherichia coli KO11FL outer membrane autotransporter barrel domain-containing protein YP_005277218.1 1601466 D 595495 CDS YP_005277219.1 378712326 11776429 complement(1605334..1606056) 1 NC_016902.1 TIGRFAM: ubiquinone biosynthesis O-methyltransferase; KEGG: sbc:SbBS512_E2607 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11; ubiquinone biosynthesis O-methyltransferase 1606056 11776429 EKO11_1530 Escherichia coli KO11FL ubiquinone biosynthesis O-methyltransferase YP_005277219.1 1605334 R 595495 CDS YP_005277220.1 378712327 11776430 1606203..1608830 1 NC_016902.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: sbc:SbBS512_E2606 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 1608830 11776430 EKO11_1531 Escherichia coli KO11FL DNA gyrase subunit A YP_005277220.1 1606203 D 595495 CDS YP_005277221.1 378712328 11776431 1608979..1610667 1 NC_016902.1 PFAM: Protein of unknown function DUF2138; KEGG: ebw:BWG_2002 hypothetical protein; hypothetical protein 1610667 11776431 EKO11_1532 Escherichia coli KO11FL hypothetical protein YP_005277221.1 1608979 D 595495 CDS YP_005277222.1 378712329 11776432 1610664..1611287 1 NC_016902.1 PFAM: protein of unknown function DUF1175; KEGG: eoh:ECO103_2698 hypothetical protein; hypothetical protein 1611287 11776432 EKO11_1533 Escherichia coli KO11FL hypothetical protein YP_005277222.1 1610664 D 595495 CDS YP_005277223.1 378712330 11776433 1611221..1615825 1 NC_016902.1 KEGG: eoj:ECO26_3148 alpha-2-macroglobulin family protein; manually curated; PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; alpha-2-macroglobulin domain-containing protein 1615825 11776433 EKO11_1534 Escherichia coli KO11FL alpha-2-macroglobulin domain-containing protein YP_005277223.1 1611221 D 595495 CDS YP_005277224.1 378712331 11776434 1615826..1617475 1 NC_016902.1 PFAM: Protein of unknown function DUF2300, secreted; KEGG: ssn:SSON_2285 hypothetical protein; hypothetical protein 1617475 11776434 EKO11_1535 Escherichia coli KO11FL hypothetical protein YP_005277224.1 1615826 D 595495 CDS YP_005277225.1 378712332 11776435 1617480..1618256 1 NC_016902.1 PFAM: Protein of unknown function DUF2135; KEGG: eoh:ECO103_2695 hypothetical protein; hypothetical protein 1618256 11776435 EKO11_1536 Escherichia coli KO11FL hypothetical protein YP_005277225.1 1617480 D 595495 CDS YP_005277226.1 378712333 11779443 1618531..1621380 1 NC_016902.1 KEGG: ssn:SSON_2277 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; PFAM: Signal transduction histidine kinase RcsC, alpha-beta loop-like; ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; integral membrane sensor hybrid histidine kinase 1621380 11779443 EKO11_1537 Escherichia coli KO11FL integral membrane sensor hybrid histidine kinase YP_005277226.1 1618531 D 595495 CDS YP_005277227.1 378712334 11779444 complement(1621580..1622230) 1 NC_016902.1 KEGG: cko:CKO_00553 transcriptional regulator RcsB; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; two component transcriptional regulator, LuxR family 1622230 11779444 EKO11_1538 Escherichia coli KO11FL two component transcriptional regulator, LuxR family YP_005277227.1 1621580 R 595495 CDS YP_005277228.1 378712335 11776436 complement(1622247..1624919) 1 NC_016902.1 KEGG: eoj:ECO26_3143 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; PFAM: Hpt domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; Hpt sensor signal transduction histidine kinase 1624919 11776436 EKO11_1539 Escherichia coli KO11FL Hpt sensor signal transduction histidine kinase YP_005277228.1 1622247 R 595495 CDS YP_005277229.1 378712336 11779445 1625658..1626761 1 NC_016902.1 PFAM: porin Gram-negative type; KEGG: eoh:ECO103_2691 outer membrane porin protein C; porin 1626761 11779445 EKO11_1540 Escherichia coli KO11FL porin YP_005277229.1 1625658 D 595495 CDS YP_005277230.1 378712337 11776437 1626873..1627928 1 NC_016902.1 PFAM: ApbE family lipoprotein; KEGG: sbo:SBO_2093 thiamine biosynthesis lipoprotein ApbE; ApbE family lipoprotein 1627928 11776437 EKO11_1541 Escherichia coli KO11FL ApbE family lipoprotein YP_005277230.1 1626873 D 595495 CDS YP_005277231.1 378712338 11776438 1628002..1629066 1 NC_016902.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain-containing protein; helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; KEGG: ebw:BWG_1987 fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; SMART: Helix-turn-helix, AraC domain; Ada DNA repair protein/AraC family transcriptional regulator 1629066 11776438 EKO11_1542 Escherichia coli KO11FL Ada DNA repair protein/AraC family transcriptional regulator YP_005277231.1 1628002 D 595495 CDS YP_005277232.1 378712339 11776439 1629066..1629716 1 NC_016902.1 KEGG: eoi:ECO111_2949 oxidative demethylase AlkB; TIGRFAM: alkylated DNA repair protein AlkB; PFAM: 2OG-Fe(II) oxygenase; alkylated DNA repair protein AlkB 1629716 11776439 EKO11_1543 Escherichia coli KO11FL alkylated DNA repair protein AlkB YP_005277232.1 1629066 D 595495 CDS YP_005277233.1 378712340 11776440 1629792..1631435 1 NC_016902.1 TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; KEGG: eoh:ECO103_2687 multidrug transporter membrane component/ATP-binding component; SMART: AAA ATPase; cyclic peptide transporter 1631435 11776440 EKO11_1544 Escherichia coli KO11FL cyclic peptide transporter YP_005277233.1 1629792 D 595495 CDS YP_005277234.1 378712341 11776441 1631653..1633299 1 NC_016902.1 TIGRFAM: malate/quinone oxidoreductase; KEGG: eoj:ECO26_3137 malate:quinone oxidoreductase; PFAM: Malate:quinone-oxidoreductase; malate/quinone oxidoreductase 1633299 11776441 EKO11_1545 Escherichia coli KO11FL malate/quinone oxidoreductase YP_005277234.1 1631653 D 595495 CDS YP_005277235.1 378712342 11776442 complement(1633448..1633936) 1 NC_016902.1 PFAM: proteinase inhibitor I11 ecotin; KEGG: eoi:ECO111_2946 ecotin; proteinase inhibitor I11 ecotin 1633936 11776442 EKO11_1546 Escherichia coli KO11FL proteinase inhibitor I11 ecotin YP_005277235.1 1633448 R 595495 CDS YP_005277236.1 378712343 11776443 complement(1634021..1634236) 1 NC_016902.1 KEGG: sbc:SbBS512_E0732 hypothetical protein; hypothetical protein 1634236 11776443 EKO11_1547 Escherichia coli KO11FL hypothetical protein YP_005277236.1 1634021 R 595495 CDS YP_005277237.1 378712344 11776444 1634345..1634839 1 NC_016902.1 TIGRFAM: ferredoxin-type protein NapF; KEGG: efe:EFER_2298 ferredoxin-type protein; ferredoxin-type protein NapF 1634839 11776444 EKO11_1548 Escherichia coli KO11FL ferredoxin-type protein NapF YP_005277237.1 1634345 D 595495 CDS YP_005277238.1 378712345 11776445 1634829..1635092 1 NC_016902.1 PFAM: NapD family protein; KEGG: sbc:SbBS512_E0734 assembly protein for periplasmic nitrate reductase; NapD family protein 1635092 11776445 EKO11_1549 Escherichia coli KO11FL NapD family protein YP_005277238.1 1634829 D 595495 CDS YP_005277239.1 378712346 11776446 1635089..1637575 1 NC_016902.1 KEGG: ssn:SSON_2264 nitrate reductase catalytic subunit; TIGRFAM: periplasmic nitrate reductase, large subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; molydopterin dinucleotide-binding region; periplasmic nitrate reductase, large subunit 1637575 11776446 EKO11_1550 Escherichia coli KO11FL periplasmic nitrate reductase, large subunit YP_005277239.1 1635089 D 595495 CDS YP_005277240.1 378712347 11776447 1637582..1638277 1 NC_016902.1 TIGRFAM: MauM/NapG family ferredoxin-type protein; KEGG: sdy:SDY_0873 quinol dehydrogenase periplasmic component; MauM/NapG family ferredoxin-type protein 1638277 11776447 EKO11_1551 Escherichia coli KO11FL MauM/NapG family ferredoxin-type protein YP_005277240.1 1637582 D 595495 CDS YP_005277241.1 378712348 11776448 1638264..1639127 1 NC_016902.1 TIGRFAM: ferredoxin-type protein, NapH/MauN family; KEGG: eoh:ECO103_2679 quinol dehydrogenase membrane component; ferredoxin-type protein, NapH/MauN family 1639127 11776448 EKO11_1552 Escherichia coli KO11FL ferredoxin-type protein, NapH/MauN family YP_005277241.1 1638264 D 595495 CDS YP_005277242.1 378712349 11776449 1639124..1639573 1 NC_016902.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: sbc:SbBS512_E0738 citrate reductase cytochrome c-type subunit; nitrate reductase cytochrome c-type subunit (NapB) 1639573 11776449 EKO11_1553 Escherichia coli KO11FL nitrate reductase cytochrome c-type subunit (NapB) YP_005277242.1 1639124 D 595495 CDS YP_005277243.1 378712350 11776450 1639583..1640185 1 NC_016902.1 KEGG: sbc:SbBS512_E0739 cytochrome c-type protein NapC; TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; periplasmic nitrate (or nitrite) reductase c-type cytochrome 1640185 11776450 EKO11_1554 Escherichia coli KO11FL periplasmic nitrate (or nitrite) reductase c-type cytochrome YP_005277243.1 1639583 D 595495 CDS YP_005277244.1 378712351 11776451 1640204..1640821 1 NC_016902.1 TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; KEGG: sbc:SbBS512_E0740 cytochrome c biogenesis protein CcmA; SMART: AAA ATPase; heme exporter protein CcmA 1640821 11776451 EKO11_1555 Escherichia coli KO11FL heme exporter protein CcmA YP_005277244.1 1640204 D 595495 CDS YP_005277245.1 378712352 11776452 1640818..1641480 1 NC_016902.1 KEGG: sdy:SDY_0878 heme exporter protein B; TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; heme exporter protein CcmB 1641480 11776452 EKO11_1556 Escherichia coli KO11FL heme exporter protein CcmB YP_005277245.1 1640818 D 595495 CDS YP_005277246.1 378712353 11776453 1641522..1642259 1 NC_016902.1 KEGG: sdy:SDY_0879 heme exporter protein C; TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; heme exporter protein CcmC 1642259 11776453 EKO11_1557 Escherichia coli KO11FL heme exporter protein CcmC YP_005277246.1 1641522 D 595495 CDS YP_005277247.1 378712354 11776454 1642256..1642465 1 NC_016902.1 KEGG: sdy:SDY_0880 heme exporter protein C; TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); heme exporter protein CcmD 1642465 11776454 EKO11_1558 Escherichia coli KO11FL heme exporter protein CcmD YP_005277247.1 1642256 D 595495 CDS YP_005277248.1 378712355 11776455 1642462..1642941 1 NC_016902.1 PFAM: CcmE/CycJ protein; KEGG: sdy:SDY_0881 cytochrome c-type biogenesis protein CcmE; CcmE/CycJ protein 1642941 11776455 EKO11_1559 Escherichia coli KO11FL CcmE/CycJ protein YP_005277248.1 1642462 D 595495 CDS YP_005277249.1 378712356 11779446 1642938..1644881 1 NC_016902.1 KEGG: ebd:ECBD_1464 cytochrome c assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; cytochrome c-type biogenesis protein CcmF 1644881 11779446 EKO11_1560 Escherichia coli KO11FL cytochrome c-type biogenesis protein CcmF YP_005277249.1 1642938 D 595495 CDS YP_005277250.1 378712357 11776456 1644878..1645435 1 NC_016902.1 KEGG: sbc:SbBS512_E0746 thiol:disulfide interchange protein DsbE; TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; protein thiol/disulfide oxidoreductase DsbE 1645435 11776456 EKO11_1561 Escherichia coli KO11FL protein thiol/disulfide oxidoreductase DsbE YP_005277250.1 1644878 D 595495 CDS YP_005277251.1 378712358 11776457 1645432..1646484 1 NC_016902.1 PFAM: cytochrome C biogenesis protein; KEGG: eoh:ECO103_2669 heme lyase, CcmH subunit; cytochrome C biogenesis protein 1646484 11776457 EKO11_1562 Escherichia coli KO11FL cytochrome C biogenesis protein YP_005277251.1 1645432 D 595495 CDS YP_005277252.1 378712359 11776458 complement(1646519..1647166) 1 NC_016902.1 KEGG: sdy:SDY_0885 transcriptional regulator NarP; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; two component transcriptional regulator, LuxR family 1647166 11776458 EKO11_1563 Escherichia coli KO11FL two component transcriptional regulator, LuxR family YP_005277252.1 1646519 R 595495 CDS YP_005277253.1 378712360 11776461 complement(1650332..1652092) 1 NC_016902.1 PFAM: sulfatase; KEGG: eoh:ECO103_2665 putative hydrolase, inner membrane; sulfatase 1652092 11776461 EKO11_1565 Escherichia coli KO11FL sulfatase YP_005277253.1 1650332 R 595495 CDS YP_005277254.1 378712361 11776462 complement(1652112..1652339) 1 NC_016902.1 PFAM: protein of unknown function DUF1414; KEGG: sbc:SbBS512_E0770 hypothetical protein; hypothetical protein 1652339 11776462 EKO11_1566 Escherichia coli KO11FL hypothetical protein YP_005277254.1 1652112 R 595495 CDS YP_005277255.1 378712362 11776463 1652521..1653528 1 NC_016902.1 PFAM: 37kDa nucleoid-associated protein; KEGG: sdy:SDY_0893 nucleoid-associated protein NdpA; 37kDa nucleoid-associated protein 1653528 11776463 EKO11_1567 Escherichia coli KO11FL 37kDa nucleoid-associated protein YP_005277255.1 1652521 D 595495 CDS YP_005277256.1 378712363 11776464 complement(1653667..1653951) 1 NC_016902.1 PFAM: Ribosomal protein L25-like; KEGG: sdy:SDY_0894 50S ribosomal protein L25; 50S ribosomal protein L25-like protein 1653951 11776464 EKO11_1568 Escherichia coli KO11FL 50S ribosomal protein L25-like protein YP_005277256.1 1653667 R 595495 CDS YP_005277257.1 378712364 11776465 complement(1654076..1655836) 1 NC_016902.1 KEGG: sbc:SbBS512_E0774 putative helicase; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; type III restriction protein res subunit 1655836 11776465 EKO11_1569 Escherichia coli KO11FL type III restriction protein res subunit YP_005277257.1 1654076 R 595495 CDS YP_005277258.1 378712365 11776466 1655985..1656680 1 NC_016902.1 KEGG: sbo:SBO_2141 16S rRNA pseudouridylate synthase A; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; pseudouridine synthase 1656680 11776466 EKO11_1570 Escherichia coli KO11FL pseudouridine synthase YP_005277258.1 1655985 D 595495 CDS YP_005277259.1 378712366 11776467 1656708..1657898 1 NC_016902.1 KEGG: ebd:ECBD_1475 bicyclomycin/multidrug efflux system; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; multidrug/H+ antiporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter 1657898 11776467 EKO11_1571 Escherichia coli KO11FL Bcr/CflA subfamily drug resistance transporter YP_005277259.1 1656708 D 595495 CDS YP_005277260.1 378712367 11779447 1658231..1658575 1 NC_016902.1 KEGG: sdy:SDY_0898 hypothetical protein; hypothetical protein 1658575 11779447 EKO11_1572 Escherichia coli KO11FL hypothetical protein YP_005277260.1 1658231 D 595495 CDS YP_005277261.1 378712368 11779448 complement(1658579..1660168) 1 NC_016902.1 KEGG: eoh:ECO103_2657 fused putative oligopeptide transporter subunits of ABC superfamilly: ATP-binding components; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; ABC transporter 1660168 11779448 EKO11_1573 Escherichia coli KO11FL ABC transporter YP_005277261.1 1658579 R 595495 CDS YP_005277262.1 378712369 11776468 complement(1660170..1661195) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_2145 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 1661195 11776468 EKO11_1574 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005277262.1 1660170 R 595495 CDS YP_005277263.1 378712370 11776469 complement(1661195..1662289) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_2234 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 1662289 11776469 EKO11_1575 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005277263.1 1661195 R 595495 CDS YP_005277264.1 378712371 11776470 complement(1662290..1664104) 1 NC_016902.1 PFAM: extracellular solute-binding protein family 5; KEGG: ebd:ECBD_1480 extracellular solute-binding protein family 5; family 5 extracellular solute-binding protein 1664104 11776470 EKO11_1576 Escherichia coli KO11FL family 5 extracellular solute-binding protein YP_005277264.1 1662290 R 595495 CDS YP_005277265.1 378712372 11776471 complement(1664186..1665742) 1 NC_016902.1 KEGG: eoh:ECO103_2653 hypothetical protein; PFAM: EAL domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase 1665742 11776471 EKO11_1577 Escherichia coli KO11FL diguanylate phosphodiesterase YP_005277265.1 1664186 R 595495 CDS YP_005277266.1 378712373 11776472 complement(1665923..1666489) 1 NC_016902.1 PFAM: NLP/P60 protein; KEGG: sdy:SDY_0904 putative outer membrane lipoprotein; NLP/P60 protein 1666489 11776472 EKO11_1578 Escherichia coli KO11FL NLP/P60 protein YP_005277266.1 1665923 R 595495 CDS YP_005277267.1 378712374 11776473 complement(1666901..1667614) 1 NC_016902.1 KEGG: eoh:ECO103_2651 undecaprenyl pyrophosphate phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; phosphoesterase PA-phosphatase-like protein 1667614 11776473 EKO11_1579 Escherichia coli KO11FL phosphoesterase PA-phosphatase-like protein YP_005277267.1 1666901 R 595495 CDS YP_005277268.1 378712375 11776474 complement(1667653..1668639) 1 NC_016902.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sbc:SbBS512_E0785 CobW/P47K family protein; cobalamin synthesis protein P47K 1668639 11776474 EKO11_1580 Escherichia coli KO11FL cobalamin synthesis protein P47K YP_005277268.1 1667653 R 595495 CDS YP_005277269.1 378712376 11776475 complement(1668757..1670223) 1 NC_016902.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: eoj:ECO26_3085 putative dehydrogenase, NAD-dependent; mannitol dehydrogenase domain-containing protein 1670223 11776475 EKO11_1581 Escherichia coli KO11FL mannitol dehydrogenase domain-containing protein YP_005277269.1 1668757 R 595495 CDS YP_005277270.1 378712377 11776476 complement(1670446..1671018) 1 NC_016902.1 KEGG: sdy:SDY_0908 elongation factor P; TIGRFAM: elongation factor P-like protein YeiP; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW-like domain-containing protein; Elongation factor P; elongation factor P-like protein YeiP 1671018 11776476 EKO11_1582 Escherichia coli KO11FL elongation factor P-like protein YeiP YP_005277270.1 1670446 R 595495 CDS YP_005277271.1 378712378 11779449 1671173..1671427 1 NC_016902.1 PFAM: protein of unknown function UPF0153; KEGG: ebd:ECBD_1487 protein of unknown function UPF0153; hypothetical protein 1671427 11779449 EKO11_1583 Escherichia coli KO11FL hypothetical protein YP_005277271.1 1671173 D 595495 CDS YP_005277272.1 378712379 11776477 complement(1671424..1672605) 1 NC_016902.1 KEGG: eoj:ECO26_3082 lactose/glucose efflux system protein SetB; TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; sugar efflux transporter 1672605 11776477 EKO11_1584 Escherichia coli KO11FL sugar efflux transporter YP_005277272.1 1671424 R 595495 CDS YP_005277273.1 378712380 11776478 1672973..1674103 1 NC_016902.1 KEGG: eoi:ECO111_2887 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphoryl transfer system HPr; HPr family phosphocarrier protein 1674103 11776478 EKO11_1585 Escherichia coli KO11FL HPr family phosphocarrier protein YP_005277273.1 1672973 D 595495 CDS YP_005277274.1 378712381 11776479 1674103..1675041 1 NC_016902.1 KEGG: sdy:SDY_2316 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 1675041 11776479 EKO11_1586 Escherichia coli KO11FL 1-phosphofructokinase YP_005277274.1 1674103 D 595495 CDS YP_005277275.1 378712382 11776480 1675058..1676749 1 NC_016902.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; KEGG: eoi:ECO111_2885 PTS system fructose-specific transporter subunits IIBC; PFAM: phosphotransferase system EIIC; PTS system fructose subfamily transporter subunit IIC 1676749 11776480 EKO11_1587 Escherichia coli KO11FL PTS system fructose subfamily transporter subunit IIC YP_005277275.1 1675058 D 595495 CDS YP_005277276.1 378712383 11776481 1677173..1678114 1 NC_016902.1 PFAM: PfkB domain protein; KEGG: eoh:ECO103_2641 hypothetical protein; PfkB domain-containing protein 1678114 11776481 EKO11_1588 Escherichia coli KO11FL PfkB domain-containing protein YP_005277276.1 1677173 D 595495 CDS YP_005277277.1 378712384 11776482 1678102..1679040 1 NC_016902.1 PFAM: Indigoidine synthase A family protein; KEGG: eoi:ECO111_2883 hypothetical protein; Indigoidine synthase A family protein 1679040 11776482 EKO11_1589 Escherichia coli KO11FL Indigoidine synthase A family protein YP_005277277.1 1678102 D 595495 CDS YP_005277278.1 378712385 11776483 1679134..1680384 1 NC_016902.1 KEGG: sbc:SbBS512_E0801 nucleoside transporter, NupC family; TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; nucleoside transporter 1680384 11776483 EKO11_1590 Escherichia coli KO11FL nucleoside transporter YP_005277278.1 1679134 D 595495 CDS YP_005277279.1 378712386 11776484 complement(1680452..1681150) 1 NC_016902.1 KEGG: eok:G2583_2706 DNA-binding transcriptional activator of stationary phase nitrogen survival; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; CarD family transcriptional regulator 1681150 11776484 EKO11_1591 Escherichia coli KO11FL CarD family transcriptional regulator YP_005277279.1 1680452 R 595495 CDS YP_005277280.1 378712387 11776485 1681280..1682221 1 NC_016902.1 KEGG: eoi:ECO111_2880 ribonucleoside hydrolase 2; PFAM: Inosine/uridine-preferring nucleoside hydrolase; ribosylpyrimidine nucleosidase 1682221 11776485 EKO11_1592 Escherichia coli KO11FL ribosylpyrimidine nucleosidase YP_005277280.1 1681280 D 595495 CDS YP_005277281.1 378712388 11776486 1682321..1683571 1 NC_016902.1 KEGG: sdy:SDY_2105 putative transport system permease protein; TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; nucleoside transporter 1683571 11776486 EKO11_1593 Escherichia coli KO11FL nucleoside transporter YP_005277281.1 1682321 D 595495 CDS YP_005277282.1 378712389 11776487 complement(1683627..1684715) 1 NC_016902.1 PFAM: PfkB domain protein; KEGG: eok:G2583_2703 kinase, PfkB family; PfkB domain-containing protein 1684715 11776487 EKO11_1594 Escherichia coli KO11FL PfkB domain-containing protein YP_005277282.1 1683627 R 595495 CDS YP_005277283.1 378712390 11776488 complement(1684718..1685575) 1 NC_016902.1 SMART: AP endonuclease family 2; TIGRFAM: apurinic endonuclease Apn1; KEGG: sbo:SBO_2168 endonuclease IV; PFAM: Xylose isomerase domain-containing protein TIM barrel; apurinic endonuclease Apn1 1685575 11776488 EKO11_1595 Escherichia coli KO11FL apurinic endonuclease Apn1 YP_005277283.1 1684718 R 595495 CDS YP_005277284.1 378712391 11779450 complement(1685649..1686698) 1 NC_016902.1 PFAM: Uncharacterised protein family UPF0324; KEGG: sbo:SBO_2169 hypothetical protein; hypothetical protein 1686698 11779450 EKO11_1596 Escherichia coli KO11FL hypothetical protein YP_005277284.1 1685649 R 595495 CDS YP_005277285.1 378712392 11776489 1686797..1687678 1 NC_016902.1 KEGG: ssn:SSON_2213 putative DNA-binding transcriptional regulator; manually curated; PFAM: LysR substrate-binding; regulatory protein LysR; LysR family transcriptional regulator 1687678 11776489 EKO11_1597 Escherichia coli KO11FL LysR family transcriptional regulator YP_005277285.1 1686797 D 595495 CDS YP_005277286.1 378712393 11776490 1687883..1689352 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2110 lysine transporter; amino acid permease 1689352 11776490 EKO11_1598 Escherichia coli KO11FL amino acid permease YP_005277286.1 1687883 D 595495 CDS YP_005277287.1 378712394 11776491 1689645..1691636 1 NC_016902.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: stm:STM2199 ligand-binding site; other site; TonB-dependent receptor plug 1691636 11776491 EKO11_1599 Escherichia coli KO11FL TonB-dependent receptor plug YP_005277287.1 1689645 D 595495 CDS YP_005277288.1 378712395 11776492 complement(1691668..1692504) 1 NC_016902.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: sbc:SbBS512_E0812 S-formylglutathione hydrolase; PFAM: esterase; S-formylglutathione hydrolase 1692504 11776492 EKO11_1600 Escherichia coli KO11FL S-formylglutathione hydrolase YP_005277288.1 1691668 R 595495 CDS YP_005277289.1 378712396 11776493 1692762..1693430 1 NC_016902.1 TIGRFAM: GTP cyclohydrolase I; KEGG: sdy:SDY_2127 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; GTP cyclohydrolase I 1693430 11776493 EKO11_1601 Escherichia coli KO11FL GTP cyclohydrolase I YP_005277289.1 1692762 D 595495 CDS YP_005277290.1 378712397 11776494 1693447..1694604 1 NC_016902.1 PFAM: protein of unknown function DUF418; KEGG: ebd:ECBD_1506 hypothetical protein; hypothetical protein 1694604 11776494 EKO11_1602 Escherichia coli KO11FL hypothetical protein YP_005277290.1 1693447 D 595495 CDS YP_005277291.1 378712398 11776495 1694746..1695786 1 NC_016902.1 KEGG: eoj:ECO26_3063 DNA-binding transcriptional regulator GalS; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator 1695786 11776495 EKO11_1603 Escherichia coli KO11FL LacI family transcriptional regulator YP_005277291.1 1694746 D 595495 CDS YP_005277292.1 378712399 11776496 1696066..1697064 1 NC_016902.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sdy:SDY_2130 galactose-binding transport protein; periplasmic binding protein/LacI transcriptional regulator 1697064 11776496 EKO11_1604 Escherichia coli KO11FL periplasmic binding protein/LacI transcriptional regulator YP_005277292.1 1696066 D 595495 CDS YP_005277293.1 378712400 11776497 1697125..1698645 1 NC_016902.1 KEGG: ssn:SSON_2205 galactose/methyl galaxtoside transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1698645 11776497 EKO11_1605 Escherichia coli KO11FL ABC transporter YP_005277293.1 1697125 D 595495 CDS YP_005277294.1 378712401 11776498 1698661..1699671 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E0823 beta-methylgalactoside transporter inner membrane component; inner-membrane translocator 1699671 11776498 EKO11_1606 Escherichia coli KO11FL inner-membrane translocator YP_005277294.1 1698661 D 595495 CDS YP_005277295.1 378712402 11776499 complement(1699742..1700977) 1 NC_016902.1 TIGRFAM: dihydroorotate dehydrogenase family protein; KEGG: eoi:ECO111_2864 dihydropyrimidine dehydrogenase; PFAM: dihydroorotate oxidase; dihydroorotate dehydrogenase family protein 1700977 11776499 EKO11_1607 Escherichia coli KO11FL dihydroorotate dehydrogenase family protein YP_005277295.1 1699742 R 595495 CDS YP_005277296.1 378712403 11776500 complement(1700971..1702209) 1 NC_016902.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eok:G2583_2689 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1702209 11776500 EKO11_1608 Escherichia coli KO11FL FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005277296.1 1700971 R 595495 CDS YP_005277297.1 378712404 11776502 complement(1702528..1702767) 1 NC_016902.1 KEGG: sbc:SbBS512_E0826 hypothetical protein; hypothetical protein 1702767 11776502 EKO11_1610 Escherichia coli KO11FL hypothetical protein YP_005277297.1 1702528 R 595495 CDS YP_005277298.1 378712405 11776503 complement(1702770..1703489) 1 NC_016902.1 PFAM: protein of unknown function DUF218; KEGG: sdy:SDY_2143 hypothetical protein; hypothetical protein 1703489 11776503 EKO11_1611 Escherichia coli KO11FL hypothetical protein YP_005277298.1 1702770 R 595495 CDS YP_005277299.1 378712406 11779451 complement(1703639..1704523) 1 NC_016902.1 TIGRFAM: cytidine deaminase; KEGG: sbc:SbBS512_E0828 cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding domain protein; CMP/dCMP deaminase zinc-binding; cytidine deaminase 1704523 11779451 EKO11_1612 Escherichia coli KO11FL cytidine deaminase YP_005277299.1 1703639 R 595495 CDS YP_005277300.1 378712407 11776504 complement(1704653..1705348) 1 NC_016902.1 PFAM: LrgB family protein; KEGG: sbc:SbBS512_E0829 hypothetical protein; LrgB family protein 1705348 11776504 EKO11_1613 Escherichia coli KO11FL LrgB family protein YP_005277300.1 1704653 R 595495 CDS YP_005277301.1 378712408 11776505 complement(1705345..1705743) 1 NC_016902.1 PFAM: LrgA family protein; KEGG: sbo:SBO_1000 hypothetical protein; LrgA family protein 1705743 11776505 EKO11_1614 Escherichia coli KO11FL LrgA family protein YP_005277301.1 1705345 R 595495 CDS YP_005277302.1 378712409 11776506 1705982..1706932 1 NC_016902.1 PFAM: dihydrouridine synthase DuS; KEGG: eoh:ECO103_2615 tRNA-dihydrouridine synthase C; dihydrouridine synthase DuS 1706932 11776506 EKO11_1615 Escherichia coli KO11FL dihydrouridine synthase DuS YP_005277302.1 1705982 D 595495 CDS YP_005277303.1 378712410 11776508 1709116..1709877 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eoh:ECO103_2613 acetoin dehydrogenase; short-chain dehydrogenase/reductase SDR 1709877 11776508 EKO11_1617 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005277303.1 1709116 D 595495 CDS YP_005277304.1 378712411 11776509 complement(1710007..1710585) 1 NC_016902.1 PFAM: SNARE associated Golgi protein; KEGG: sbc:SbBS512_E0835 hypothetical protein; hypothetical protein 1710585 11776509 EKO11_1618 Escherichia coli KO11FL hypothetical protein YP_005277304.1 1710007 R 595495 CDS YP_005277305.1 378712412 11776510 1710755..1711342 1 NC_016902.1 PFAM: protein of unknown function DUF1282; KEGG: sbo:SBO_1009 hypothetical protein; hypothetical protein 1711342 11776510 EKO11_1619 Escherichia coli KO11FL hypothetical protein YP_005277305.1 1710755 D 595495 CDS YP_005277306.1 378712413 11776511 1711516..1712448 1 NC_016902.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ssn:SSON_2191 D-alanyl-D-alanine endopeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 1712448 11776511 EKO11_1620 Escherichia coli KO11FL peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_005277306.1 1711516 D 595495 CDS YP_005277307.1 378712414 11776512 complement(1712486..1714201) 1 NC_016902.1 KEGG: sbc:SbBS512_E0839 D-lactate dehydrogenase; PFAM: D-lactate dehydrogenase membrane binding ; FAD linked oxidase domain protein; D-lactate dehydrogenase 1714201 11776512 EKO11_1621 Escherichia coli KO11FL D-lactate dehydrogenase YP_005277307.1 1712486 R 595495 CDS YP_005277308.1 378712415 11776513 1714397..1716694 1 NC_016902.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: eoh:ECO103_2608 beta-D-glucoside glucohydrolase, periplasmic; glycoside hydrolase family protein 1716694 11776513 EKO11_1622 Escherichia coli KO11FL glycoside hydrolase family protein YP_005277308.1 1714397 D 595495 CDS YP_005277309.1 378712416 11776514 1716905..1717822 1 NC_016902.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ebd:ECBD_1527 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 1717822 11776514 EKO11_1623 Escherichia coli KO11FL glycine betaine ABC transporter substrate-binding protein YP_005277309.1 1716905 D 595495 CDS YP_005277310.1 378712417 11776515 1717829..1718986 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_1014 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 1718986 11776515 EKO11_1624 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005277310.1 1717829 D 595495 CDS YP_005277311.1 378712418 11776516 1718979..1719905 1 NC_016902.1 KEGG: ssn:SSON_2186 putative ATP-binding component of a transport system; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase; ABC transporter 1719905 11776516 EKO11_1625 Escherichia coli KO11FL ABC transporter YP_005277311.1 1718979 D 595495 CDS YP_005277312.1 378712419 11776517 1719910..1720641 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E0845 ABC transporter, quaternary amine uptake (QAT) family, permease protein; binding-protein-dependent transport system inner membrane protein 1720641 11776517 EKO11_1626 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005277312.1 1719910 D 595495 CDS YP_005277313.1 378712420 11776518 complement(1720622..1720729) 1 NC_016902.1 KEGG: sdy:SDY_2161 hypothetical protein; hypothetical protein 1720729 11776518 EKO11_1627 Escherichia coli KO11FL hypothetical protein YP_005277313.1 1720622 R 595495 CDS YP_005277314.1 378712421 11776519 complement(1720789..1721520) 1 NC_016902.1 KEGG: eok:G2583_2664 DNA-binding transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 1721520 11776519 EKO11_1628 Escherichia coli KO11FL MerR family transcriptional regulator YP_005277314.1 1720789 R 595495 CDS YP_005277315.1 378712422 11779452 1721742..1723427 1 NC_016902.1 KEGG: sfx:S2325 putative 2-component sensor protein; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein; signal transduction histidine kinase LytS 1723427 11779452 EKO11_1629 Escherichia coli KO11FL signal transduction histidine kinase LytS YP_005277315.1 1721742 D 595495 CDS YP_005277316.1 378712423 11776520 1723424..1724143 1 NC_016902.1 KEGG: sbo:SBO_0948 putative two-component response-regulatory protein YehT; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; LytTR family two component transcriptional regulator 1724143 11776520 EKO11_1630 Escherichia coli KO11FL LytTR family two component transcriptional regulator YP_005277316.1 1723424 D 595495 CDS YP_005277317.1 378712424 11776521 1724190..1724660 1 NC_016902.1 PFAM: protein of unknown function DUF1456; KEGG: ebw:BWG_1907 hypothetical protein; hypothetical protein 1724660 11776521 EKO11_1631 Escherichia coli KO11FL hypothetical protein YP_005277317.1 1724190 D 595495 CDS YP_005277318.1 378712425 11779453 complement(1724700..1725161) 1 NC_016902.1 PFAM: protein of unknown function DUF1307; KEGG: ssn:SSON_2169 hypothetical protein; hypothetical protein 1725161 11779453 EKO11_1632 Escherichia coli KO11FL hypothetical protein YP_005277318.1 1724700 R 595495 CDS YP_005277319.1 378712426 11776522 complement(1725286..1727286) 1 NC_016902.1 KEGG: ebd:ECBD_1537 zinc finger SWIM domain protein; zinc finger SWIM domain-containing protein 1727286 11776522 EKO11_1633 Escherichia coli KO11FL zinc finger SWIM domain-containing protein YP_005277319.1 1725286 R 595495 CDS YP_005277320.1 378712427 11776523 complement(1727283..1728419) 1 NC_016902.1 KEGG: ebd:ECBD_1538 VWA containing CoxE family protein; PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; VWA containing CoxE family protein 1728419 11776523 EKO11_1634 Escherichia coli KO11FL VWA containing CoxE family protein YP_005277320.1 1727283 R 595495 CDS YP_005277321.1 378712428 11776524 complement(1728412..1730691) 1 NC_016902.1 KEGG: eoi:ECO111_2837 hypothetical protein; hypothetical protein 1730691 11776524 EKO11_1635 Escherichia coli KO11FL hypothetical protein YP_005277321.1 1728412 R 595495 CDS YP_005277322.1 378712429 11779454 complement(1730702..1731790) 1 NC_016902.1 KEGG: eoi:ECO111_2836 putative transporter subunit; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATPase 1731790 11779454 EKO11_1636 Escherichia coli KO11FL ATPase YP_005277322.1 1730702 R 595495 CDS YP_005277323.1 378712430 11776525 complement(1732973..1733293) 1 NC_016902.1 KEGG: eoh:ECO103_2593 hypothetical protein; hypothetical protein 1733293 11776525 EKO11_1637 Escherichia coli KO11FL hypothetical protein YP_005277323.1 1732973 R 595495 CDS YP_005277324.1 378712431 11776526 complement(1733354..1736986) 1 NC_016902.1 KEGG: eoh:ECO103_2592 hypothetical protein; hypothetical protein 1736986 11776526 EKO11_1638 Escherichia coli KO11FL hypothetical protein YP_005277324.1 1733354 R 595495 CDS YP_005277325.1 378712432 11776527 complement(1736996..1740790) 1 NC_016902.1 KEGG: eoh:ECO103_2591 hypothetical protein; PFAM: WGR domain-containing protein; SMART: WGR domain-containing protein; WGR domain-containing protein 1740790 11776527 EKO11_1639 Escherichia coli KO11FL WGR domain-containing protein YP_005277325.1 1736996 R 595495 CDS YP_005277326.1 378712433 11776528 complement(1740931..1742964) 1 NC_016902.1 KEGG: eoh:ECO103_2590 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein; methionyl-tRNA synthetase 1742964 11776528 EKO11_1640 Escherichia coli KO11FL methionyl-tRNA synthetase YP_005277326.1 1740931 R 595495 CDS YP_005277327.1 378712434 11776529 1743096..1744205 1 NC_016902.1 PFAM: ATPase-like, ParA/MinD; KEGG: sbc:SbBS512_E0855 putative ATPase; ParA/MinD-like ATPase 1744205 11776529 EKO11_1641 Escherichia coli KO11FL ParA/MinD-like ATPase YP_005277327.1 1743096 D 595495 CDS YP_005277328.1 378712435 11776530 1744468..1744749 1 NC_016902.1 KEGG: eoh:ECO103_2588 hypothetical protein; hypothetical protein 1744749 11776530 EKO11_1642 Escherichia coli KO11FL hypothetical protein YP_005277328.1 1744468 D 595495 CDS YP_005277329.1 378712436 11776531 1745042..1745584 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ssn:SSON_2160 putative fimbrial-like protein; fimbrial protein domain-containing protein 1745584 11776531 EKO11_1643 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005277329.1 1745042 D 595495 CDS YP_005277330.1 378712437 11776532 1745665..1746339 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: eoi:ECO111_2826 putative chaperone; Pili assembly chaperone, N-terminal protein 1746339 11776532 EKO11_1644 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005277330.1 1745665 D 595495 CDS YP_005277331.1 378712438 11776533 1746355..1748835 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoi:ECO111_2825 putative outer membrane protein; fimbrial biogenesis outer membrane usher protein 1748835 11776533 EKO11_1645 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005277331.1 1746355 D 595495 CDS YP_005277332.1 378712439 11776534 1748851..1749885 1 NC_016902.1 KEGG: eok:G2583_2644 putative fimbrial-like adhesin protein; putative fimbrial-like adhesin protein 1749885 11776534 EKO11_1646 Escherichia coli KO11FL putative fimbrial-like adhesin protein YP_005277332.1 1748851 D 595495 CDS YP_005277333.1 378712440 11776535 complement(1749967..1750305) 1 NC_016902.1 KEGG: sbc:SbBS512_E0850 hypothetical protein; hypothetical protein 1750305 11776535 EKO11_1647 Escherichia coli KO11FL hypothetical protein YP_005277333.1 1749967 R 595495 CDS YP_005277334.1 378712441 11776536 complement(1750524..1751348) 1 NC_016902.1 PFAM: high-affinity nickel-transporter; KEGG: eok:G2583_2642 nickel/cobalt efflux system RcnA; high-affinity nickel-transporter 1751348 11776536 EKO11_1648 Escherichia coli KO11FL high-affinity nickel-transporter YP_005277334.1 1750524 R 595495 CDS YP_005277335.1 378712442 11779455 1751469..1751741 1 NC_016902.1 PFAM: protein of unknown function DUF156; KEGG: sdy:SDY_2279 hypothetical protein; hypothetical protein 1751741 11779455 EKO11_1649 Escherichia coli KO11FL hypothetical protein YP_005277335.1 1751469 D 595495 CDS YP_005277336.1 378712443 11776537 1751964..1752752 1 NC_016902.1 KEGG: eoh:ECO103_2580 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase; hydroxyethylthiazole kinase 1752752 11776537 EKO11_1650 Escherichia coli KO11FL hydroxyethylthiazole kinase YP_005277336.1 1751964 D 595495 CDS YP_005277337.1 378712444 11776538 1752749..1753549 1 NC_016902.1 TIGRFAM: phosphomethylpyrimidine kinase; KEGG: sbc:SbBS512_E1135 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1753549 11776538 EKO11_1651 Escherichia coli KO11FL phosphomethylpyrimidine kinase YP_005277337.1 1752749 D 595495 CDS YP_005277338.1 378712445 11776539 1753614..1754432 1 NC_016902.1 PFAM: glycoside hydrolase family 25; KEGG: eoj:ECO26_3011 putative hydrolase; SMART: Glycoside hydrolase, family 25 subgroup; lysozyme 1754432 11776539 EKO11_1652 Escherichia coli KO11FL lysozyme YP_005277338.1 1753614 D 595495 CDS YP_005277339.1 378712446 11776540 1754484..1755230 1 NC_016902.1 KEGG: sdy:SDY_2274 putative transcriptional regulator; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 1755230 11776540 EKO11_1653 Escherichia coli KO11FL GntR family transcriptional regulator YP_005277339.1 1754484 D 595495 CDS YP_005277340.1 378712447 11776541 complement(1755204..1756169) 1 NC_016902.1 PFAM: PfkB domain protein; KEGG: eoi:ECO111_2816 putative kinase; PfkB domain-containing protein 1756169 11776541 EKO11_1654 Escherichia coli KO11FL PfkB domain-containing protein YP_005277340.1 1755204 R 595495 CDS YP_005277341.1 378712448 11779456 complement(1756166..1757170) 1 NC_016902.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: ssn:SSON_2147 hypothetical protein; ADP-ribosylation/Crystallin J1 1757170 11779456 EKO11_1655 Escherichia coli KO11FL ADP-ribosylation/Crystallin J1 YP_005277341.1 1756166 R 595495 CDS YP_005277342.1 378712449 11776542 complement(1757167..1758444) 1 NC_016902.1 TIGRFAM: nucleoside transporter; KEGG: eoi:ECO111_2814 putative nucleoside transporter; nucleoside transporter 1758444 11776542 EKO11_1656 Escherichia coli KO11FL nucleoside transporter YP_005277342.1 1757167 R 595495 CDS YP_005277343.1 378712450 11776543 1758701..1759753 1 NC_016902.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sdy:SDY_2270 fructose-bisphosphate aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 1759753 11776543 EKO11_1657 Escherichia coli KO11FL deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_005277343.1 1758701 D 595495 CDS YP_005277344.1 378712451 11779457 1760063..1760917 1 NC_016902.1 TIGRFAM: class II aldolase, tagatose bisphosphate family; ketose-bisphosphate aldolase; KEGG: sbc:SbBS512_E1142 tagatose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; tagatose bisphosphate family class II aldolase 1760917 11779457 EKO11_1658 Escherichia coli KO11FL tagatose bisphosphate family class II aldolase YP_005277344.1 1760063 D 595495 CDS YP_005277345.1 378712452 11776544 1760946..1762208 1 NC_016902.1 KEGG: eoh:ECO103_2569 D-tagatose 1,6-bisphosphate aldolase 2 subunit GatZ; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; D-tagatose-bisphosphate aldolase non-catalytic subunit 1762208 11776544 EKO11_1659 Escherichia coli KO11FL D-tagatose-bisphosphate aldolase non-catalytic subunit YP_005277345.1 1760946 D 595495 CDS YP_005277346.1 378712453 11776545 1762218..1762670 1 NC_016902.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: eoh:ECO103_2568 PTS system galactitol-specific transporter subunit IIA; putative PTS IIA-like nitrogen-regulatory protein PtsN 1762670 11776545 EKO11_1660 Escherichia coli KO11FL putative PTS IIA-like nitrogen-regulatory protein PtsN YP_005277346.1 1762218 D 595495 CDS YP_005277347.1 378712454 11776546 1762701..1762985 1 NC_016902.1 KEGG: sfv:SFV_2148 PTS system galactitol-specific transporter subunit IIB; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; Protein-N(pi)-phosphohistidine--sugar phosphotransferase 1762985 11776546 EKO11_1661 Escherichia coli KO11FL Protein-N(pi)-phosphohistidine--sugar phosphotransferase YP_005277347.1 1762701 D 595495 CDS YP_005277348.1 378712455 11776547 1762989..1764344 1 NC_016902.1 KEGG: eoh:ECO103_2566 galactitol-specific enzyme IIC component of PTS; TIGRFAM: PTS system, galactitol-specific IIC subunit; PFAM: PTS system Galactitol-specific IIC component; PTS system galactitol-specific transporter subunit IIC 1764344 11776547 EKO11_1662 Escherichia coli KO11FL PTS system galactitol-specific transporter subunit IIC YP_005277348.1 1762989 D 595495 CDS YP_005277349.1 378712456 11776548 1764392..1765432 1 NC_016902.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ebd:ECBD_1566 galactitol-1-phosphate dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 1765432 11776548 EKO11_1663 Escherichia coli KO11FL alcohol dehydrogenase GroES domain-containing protein YP_005277349.1 1764392 D 595495 CDS YP_005277350.1 378712457 11776549 1765532..1766311 1 NC_016902.1 KEGG: ssn:SSON_2137 galactitol utilization operon repressor; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 1766311 11776549 EKO11_1664 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005277350.1 1765532 D 595495 CDS YP_005277351.1 378712458 11776550 complement(1766393..1767292) 1 NC_016902.1 KEGG: eoh:ECO103_2563 lipid kinase; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; diacylglycerol kinase catalytic subunit 1767292 11776550 EKO11_1665 Escherichia coli KO11FL diacylglycerol kinase catalytic subunit YP_005277351.1 1766393 R 595495 CDS YP_005277352.1 378712459 11776551 1767638..1768015 1 NC_016902.1 KEGG: ssn:SSON_2135 hypothetical protein; hypothetical protein 1768015 11776551 EKO11_1666 Escherichia coli KO11FL hypothetical protein YP_005277352.1 1767638 D 595495 CDS YP_005277353.1 378712460 11776552 complement(1768280..1769293) 1 NC_016902.1 PFAM: integrase family protein; KEGG: etw:ECSP_2882 integrase; integrase family protein 1769293 11776552 EKO11_1667 Escherichia coli KO11FL integrase family protein YP_005277353.1 1768280 R 595495 CDS YP_005277354.1 378712461 11776553 complement(1769409..1769708) 1 NC_016902.1 SMART: helix-turn-helix domain protein; KEGG: ebr:ECB_02011 bacteriophage P2 C-like protein; helix-turn-helix domain-containing protein 1769708 11776553 EKO11_1668 Escherichia coli KO11FL helix-turn-helix domain-containing protein YP_005277354.1 1769409 R 595495 CDS YP_005277355.1 378712462 11776554 1769830..1770105 1 NC_016902.1 PFAM: Regulatory phage protein Cox; KEGG: ebr:ECB_02010 bacteriophage P2 Cox-like protein; Regulatory phage protein Cox 1770105 11776554 EKO11_1669 Escherichia coli KO11FL Regulatory phage protein Cox YP_005277355.1 1769830 D 595495 CDS YP_005277356.1 378712463 11776555 1770116..1770286 1 NC_016902.1 KEGG: etw:ECSP_2879 hypothetical protein; hypothetical protein 1770286 11776555 EKO11_1670 Escherichia coli KO11FL hypothetical protein YP_005277356.1 1770116 D 595495 CDS YP_005277357.1 378712464 11776556 1770283..1770783 1 NC_016902.1 KEGG: etw:ECSP_2878 replication gene B protein; replication protein B 1770783 11776556 EKO11_1671 Escherichia coli KO11FL replication protein B YP_005277357.1 1770283 D 595495 CDS YP_005277358.1 378712465 11776557 1770847..1771071 1 NC_016902.1 KEGG: etw:ECSP_2877 hypothetical protein; hypothetical protein 1771071 11776557 EKO11_1672 Escherichia coli KO11FL hypothetical protein YP_005277358.1 1770847 D 595495 CDS YP_005277359.1 378712466 11776558 1771071..1771370 1 NC_016902.1 KEGG: ebr:ECB_02007 hypothetical protein; hypothetical protein 1771370 11776558 EKO11_1673 Escherichia coli KO11FL hypothetical protein YP_005277359.1 1771071 D 595495 CDS YP_005277360.1 378712467 11776559 1771373..1771597 1 NC_016902.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: ebr:ECB_02006 hypothetical protein; phage/conjugal plasmid C-4 type zinc finger protein, TraR family 1771597 11776559 EKO11_1674 Escherichia coli KO11FL phage/conjugal plasmid C-4 type zinc finger protein, TraR family YP_005277360.1 1771373 D 595495 CDS YP_005277361.1 378712468 11776560 1771594..1771869 1 NC_016902.1 KEGG: ebr:ECB_02005 hypothetical protein; hypothetical protein 1771869 11776560 EKO11_1675 Escherichia coli KO11FL hypothetical protein YP_005277361.1 1771594 D 595495 CDS YP_005277362.1 378712469 11776561 1771859..1774135 1 NC_016902.1 PFAM: replication gene A; KEGG: etw:ECSP_2873 phage replication initiation protein; replication protein A 1774135 11776561 EKO11_1676 Escherichia coli KO11FL replication protein A YP_005277362.1 1771859 D 595495 CDS YP_005277363.1 378712470 11779458 complement(1774438..1774551) 1 NC_016902.1 hypothetical protein 1774551 11779458 EKO11_1677 Escherichia coli KO11FL hypothetical protein YP_005277363.1 1774438 R 595495 CDS YP_005277364.1 378712471 11776562 1775300..1776733 1 NC_016902.1 KEGG: ctu:Ctu_32430 hypothetical protein; hypothetical protein 1776733 11776562 EKO11_1678 Escherichia coli KO11FL hypothetical protein YP_005277364.1 1775300 D 595495 CDS YP_005277365.1 378712472 11776563 1776726..1777298 1 NC_016902.1 KEGG: ctu:Ctu_32420 hypothetical protein; hypothetical protein 1777298 11776563 EKO11_1679 Escherichia coli KO11FL hypothetical protein YP_005277365.1 1776726 D 595495 CDS YP_005277366.1 378712473 11776564 complement(1777357..1778385) 1 NC_016902.1 KEGG: etw:ECSP_2868 phage capsid protein; TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein; phage portal protein, PBSX family 1778385 11776564 EKO11_1680 Escherichia coli KO11FL phage portal protein, PBSX family YP_005277366.1 1777357 R 595495 CDS YP_005277367.1 378712474 11776565 complement(1778385..1780154) 1 NC_016902.1 manually curated; KEGG: etw:ECSP_2867 phage large terminase subunit GpP; phage large terminase subunit GpP 1780154 11776565 EKO11_1681 Escherichia coli KO11FL phage large terminase subunit GpP YP_005277367.1 1778385 R 595495 CDS YP_005277368.1 378712475 11776566 1780328..1781182 1 NC_016902.1 PFAM: capsid scaffolding; KEGG: etw:ECSP_2866 phage capsid scaffolding protein GpO; capsid scaffolding 1781182 11776566 EKO11_1682 Escherichia coli KO11FL capsid scaffolding YP_005277368.1 1780328 D 595495 CDS YP_005277369.1 378712476 11776567 1781241..1782314 1 NC_016902.1 KEGG: etw:ECSP_2865 phage major capsid protein, P2 family; TIGRFAM: phage major capsid protein, P2 family; PFAM: major capsid protein P2; phage major capsid protein, P2 family 1782314 11776567 EKO11_1683 Escherichia coli KO11FL phage major capsid protein, P2 family YP_005277369.1 1781241 D 595495 CDS YP_005277370.1 378712477 11776568 1782318..1783061 1 NC_016902.1 PFAM: small terminase subunit; KEGG: etw:ECSP_2864 small terminase subunit; small terminase subunit 1783061 11776568 EKO11_1684 Escherichia coli KO11FL small terminase subunit YP_005277370.1 1782318 D 595495 CDS YP_005277371.1 378712478 11776569 1783101..1783670 1 NC_016902.1 KEGG: etw:ECSP_2863 capsid completion protein; manually curated; PFAM: head completion protein; head completion protein 1783670 11776569 EKO11_1685 Escherichia coli KO11FL head completion protein YP_005277371.1 1783101 D 595495 CDS YP_005277372.1 378712479 11776570 1783670..1783873 1 NC_016902.1 PFAM: tail X family protein; KEGG: etw:ECSP_2862 P2-like prophage tail protein X; tail X family protein 1783873 11776570 EKO11_1686 Escherichia coli KO11FL tail X family protein YP_005277372.1 1783670 D 595495 CDS YP_005277373.1 378712480 11776571 1783877..1784158 1 NC_016902.1 PFAM: holin family 2; KEGG: etw:ECSP_2861 hypothetical protein; holin family 2 1784158 11776571 EKO11_1687 Escherichia coli KO11FL holin family 2 YP_005277373.1 1783877 D 595495 CDS YP_005277374.1 378712481 11776572 1784158..1784655 1 NC_016902.1 KEGG: etw:ECSP_2860 phage lysozyme; PFAM: glycoside hydrolase family 24; lysozyme 1784655 11776572 EKO11_1688 Escherichia coli KO11FL lysozyme YP_005277374.1 1784158 D 595495 CDS YP_005277375.1 378712482 11776573 1784670..1785095 1 NC_016902.1 KEGG: etw:ECSP_2859 phage lysis protein LysA; phage lysis protein LysA 1785095 11776573 EKO11_1689 Escherichia coli KO11FL phage lysis protein LysA YP_005277375.1 1784670 D 595495 CDS YP_005277376.1 378712483 11776574 1785083..1785508 1 NC_016902.1 TIGRFAM: phage lysis regulatory protein, LysB family; KEGG: etw:ECSP_2858 phage lysis timing protein LysB; phage lysis regulatory protein, LysB family 1785508 11776574 EKO11_1690 Escherichia coli KO11FL phage lysis regulatory protein, LysB family YP_005277376.1 1785083 D 595495 CDS YP_005277377.1 378712484 11776575 1785495..1785653 1 NC_016902.1 KEGG: etw:ECSP_2857 phage lysis protein LysC; phage lysis protein LysC 1785653 11776575 EKO11_1691 Escherichia coli KO11FL phage lysis protein LysC YP_005277377.1 1785495 D 595495 CDS YP_005277378.1 378712485 11776576 1785616..1786083 1 NC_016902.1 KEGG: etw:ECSP_2856 P2 phage tail completion protein R, GpR; P2 phage tail completion protein R, GpR 1786083 11776576 EKO11_1692 Escherichia coli KO11FL P2 phage tail completion protein R, GpR YP_005277378.1 1785616 D 595495 CDS YP_005277379.1 378712486 11776577 1786076..1786528 1 NC_016902.1 TIGRFAM: phage virion morphogenesis protein; KEGG: etw:ECSP_2855 phage tail protein; phage virion morphogenesis protein 1786528 11776577 EKO11_1693 Escherichia coli KO11FL phage virion morphogenesis protein YP_005277379.1 1786076 D 595495 CDS YP_005277380.1 378712487 11776578 1786595..1787230 1 NC_016902.1 TIGRFAM: phage baseplate assembly protein V; KEGG: ebr:ECB_01998 hypothetical protein; phage baseplate assembly protein V 1787230 11776578 EKO11_1694 Escherichia coli KO11FL phage baseplate assembly protein V YP_005277380.1 1786595 D 595495 CDS YP_005277381.1 378712488 11776579 1787227..1787574 1 NC_016902.1 PFAM: GPW/gp25 family protein; KEGG: etw:ECSP_2853 phage baseplate protein; GPW/gp25 family protein 1787574 11776579 EKO11_1695 Escherichia coli KO11FL GPW/gp25 family protein YP_005277381.1 1787227 D 595495 CDS YP_005277382.1 378712489 11776580 1787579..1788487 1 NC_016902.1 PFAM: Baseplate J family protein; KEGG: etw:ECSP_2852 baseplate assembly protein; baseplate J family protein 1788487 11776580 EKO11_1696 Escherichia coli KO11FL baseplate J family protein YP_005277382.1 1787579 D 595495 CDS YP_005277383.1 378712490 11776581 1788480..1789091 1 NC_016902.1 TIGRFAM: phage tail protein I; KEGG: etw:ECSP_2851 phage P2-related tail formation protein; phage tail protein I 1789091 11776581 EKO11_1697 Escherichia coli KO11FL phage tail protein I YP_005277383.1 1788480 D 595495 CDS YP_005277384.1 378712491 11776582 1789088..1790371 1 NC_016902.1 PFAM: Tail Collar domain protein; KEGG: etw:ECSP_2850 phage tail fiber protein; Tail Collar domain-containing protein 1790371 11776582 EKO11_1698 Escherichia coli KO11FL Tail Collar domain-containing protein YP_005277384.1 1789088 D 595495 CDS YP_005277385.1 378712492 11776583 1790371..1790964 1 NC_016902.1 PFAM: tail assembly chaperone gp38; KEGG: etw:ECSP_0289 hypothetical protein; tail assembly chaperone gp38 1790964 11776583 EKO11_1699 Escherichia coli KO11FL tail assembly chaperone gp38 YP_005277385.1 1790371 D 595495 CDS YP_005277386.1 378712493 11779459 complement(1790936..1791424) 1 NC_016902.1 PFAM: tail assembly chaperone gp38; KEGG: ebw:BWG_2124 CPS-53 (KpLE1) prophage; hypothetical protein; tail assembly chaperone gp38 1791424 11779459 EKO11_1700 Escherichia coli KO11FL tail assembly chaperone gp38 YP_005277386.1 1790936 R 595495 CDS YP_005277387.1 378712494 11776585 1791711..1792415 1 NC_016902.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: etw:ECSP_2846 DNA-invertase; Resolvase domain-containing protein 1792415 11776585 EKO11_1702 Escherichia coli KO11FL Resolvase domain-containing protein YP_005277387.1 1791711 D 595495 CDS YP_005277388.1 378712495 11776586 1792475..1793665 1 NC_016902.1 KEGG: etw:ECSP_2845 phage tail sheath protein FI; phage tail sheath protein FI 1793665 11776586 EKO11_1703 Escherichia coli KO11FL phage tail sheath protein FI YP_005277388.1 1792475 D 595495 CDS YP_005277389.1 378712496 11776587 1793678..1794196 1 NC_016902.1 KEGG: etw:ECSP_2844 phage tail tube protein FII; TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; phage major tail tube protein 1794196 11776587 EKO11_1704 Escherichia coli KO11FL phage major tail tube protein YP_005277389.1 1793678 D 595495 CDS YP_005277390.1 378712497 11776589 1794673..1797120 1 NC_016902.1 KEGG: etw:ECSP_2842 phage related tail protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, TP901 family 1797120 11776589 EKO11_1706 Escherichia coli KO11FL phage tail tape measure protein, TP901 family YP_005277390.1 1794673 D 595495 CDS YP_005277391.1 378712498 11779460 1797135..1797614 1 NC_016902.1 PFAM: P2 GpU family protein; KEGG: etw:ECSP_2841 phage protein gpU; P2 GpU family protein 1797614 11779460 EKO11_1707 Escherichia coli KO11FL P2 GpU family protein YP_005277391.1 1797135 D 595495 CDS YP_005277392.1 378712499 11779461 1797614..1798777 1 NC_016902.1 KEGG: etw:ECSP_2840 phage protein D; phage protein D 1798777 11779461 EKO11_1708 Escherichia coli KO11FL phage protein D YP_005277392.1 1797614 D 595495 CDS YP_005277393.1 378712500 11776590 1798777..1799076 1 NC_016902.1 KEGG: etw:ECSP_2839 DNA-binding transcriptional regulator; manually curated; PFAM: transcriptional activator Ogr/delta; transcriptional activator Ogr/delta 1799076 11776590 EKO11_1709 Escherichia coli KO11FL transcriptional activator Ogr/delta YP_005277393.1 1798777 D 595495 CDS YP_005277394.1 378712501 11776591 complement(1799349..1800710) 1 NC_016902.1 PFAM: peptidase U32; KEGG: sbc:SbBS512_E1150 peptidase, U32 family; peptidase U32 1800710 11776591 EKO11_1710 Escherichia coli KO11FL peptidase U32 YP_005277394.1 1799349 R 595495 CDS YP_005277395.1 378712502 11776592 complement(1800813..1801109) 1 NC_016902.1 PFAM: plasmid stabilization system; KEGG: sbc:SbBS512_E1151 RelE/ParE family plasmid stabilization system protein; plasmid stabilization system 1801109 11776592 EKO11_1711 Escherichia coli KO11FL plasmid stabilization system YP_005277395.1 1800813 R 595495 CDS YP_005277396.1 378712503 11776593 complement(1801111..1801362) 1 NC_016902.1 TIGRFAM: addiction module antidote protein, CC2985 family; KEGG: sdy:SDY_2257 hypothetical protein; addiction module antidote protein 1801362 11776593 EKO11_1712 Escherichia coli KO11FL addiction module antidote protein YP_005277396.1 1801111 R 595495 CDS YP_005277397.1 378712504 11776594 complement(1801616..1801948) 1 NC_016902.1 PFAM: protein of unknown function DUF1508; KEGG: sbc:SbBS512_E1153 hypothetical protein; hypothetical protein 1801948 11776594 EKO11_1713 Escherichia coli KO11FL hypothetical protein YP_005277397.1 1801616 R 595495 CDS YP_005277398.1 378712505 11776595 complement(1802139..1802861) 1 NC_016902.1 KEGG: sbc:SbBS512_E1154 DNA-binding transcriptional regulator BaeR; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 1802861 11776595 EKO11_1714 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005277398.1 1802139 R 595495 CDS YP_005277399.1 378712506 11776596 complement(1802858..1804261) 1 NC_016902.1 KEGG: ebd:ECBD_1575 signal transduction histidine-protein kinase BaeS; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 1804261 11776596 EKO11_1715 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005277399.1 1802858 R 595495 CDS YP_005277400.1 378712507 11776597 complement(1804258..1805673) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoh:ECO103_2555 multidrug efflux system protein MdtE; major facilitator superfamily protein 1805673 11776597 EKO11_1716 Escherichia coli KO11FL major facilitator superfamily protein YP_005277400.1 1804258 R 595495 CDS YP_005277401.1 378712508 11776598 complement(1805674..1808751) 1 NC_016902.1 PFAM: acriflavin resistance protein; KEGG: efe:EFER_2163 multidrug efflux system subunit MdtC; acriflavin resistance protein 1808751 11776598 EKO11_1717 Escherichia coli KO11FL acriflavin resistance protein YP_005277401.1 1805674 R 595495 CDS YP_005277402.1 378712509 11776599 complement(1808752..1811874) 1 NC_016902.1 PFAM: acriflavin resistance protein; KEGG: ebw:BWG_1865 multidrug efflux system subunit MdtB; acriflavin resistance protein 1811874 11776599 EKO11_1718 Escherichia coli KO11FL acriflavin resistance protein YP_005277402.1 1808752 R 595495 CDS YP_005277403.1 378712510 11776600 complement(1811874..1813121) 1 NC_016902.1 KEGG: sbc:SbBS512_E1159 multidrug efflux system subunit MdtA; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 1813121 11776600 EKO11_1719 Escherichia coli KO11FL RND family efflux transporter MFP subunit YP_005277403.1 1811874 R 595495 CDS YP_005277404.1 378712511 11776601 1814337..1814996 1 NC_016902.1 KEGG: sbc:SbBS512_E1160 von Willebrand factor type A domain protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; von Willebrand factor type A 1814996 11776601 EKO11_1720 Escherichia coli KO11FL von Willebrand factor type A YP_005277404.1 1814337 D 595495 CDS YP_005277405.1 378712512 11776602 1814993..1815754 1 NC_016902.1 manually curated; KEGG: sfx:S2261 hypothetical protein; hypothetical protein 1815754 11776602 EKO11_1721 Escherichia coli KO11FL hypothetical protein YP_005277405.1 1814993 D 595495 CDS YP_005277406.1 378712513 11776603 complement(1815819..1816280) 1 NC_016902.1 KEGG: ebw:BWG_1861 hypothetical protein; hypothetical protein 1816280 11776603 EKO11_1722 Escherichia coli KO11FL hypothetical protein YP_005277406.1 1815819 R 595495 CDS YP_005277407.1 378712514 11776604 1816517..1818424 1 NC_016902.1 KEGG: ebw:BWG_1860 hypothetical protein; hypothetical protein 1818424 11776604 EKO11_1723 Escherichia coli KO11FL hypothetical protein YP_005277407.1 1816517 D 595495 CDS YP_005277408.1 378712515 11776605 complement(1818436..1819788) 1 NC_016902.1 KEGG: eoh:ECO103_2548 putative chaperone; putative chaperone 1819788 11776605 EKO11_1724 Escherichia coli KO11FL putative chaperone YP_005277408.1 1818436 R 595495 CDS YP_005277409.1 378712516 11776606 1819922..1820779 1 NC_016902.1 KEGG: eoj:ECO26_2980 3-methyl-adenine DNA glycosylase II; PFAM: AlkA domain protein; HhH-GPD family protein; SMART: HhH-GPD family protein; AlkA domain-containing protein 1820779 11776606 EKO11_1725 Escherichia coli KO11FL AlkA domain-containing protein YP_005277409.1 1819922 D 595495 CDS YP_005277410.1 378712517 11776607 complement(1820818..1824135) 1 NC_016902.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; EAL domain protein; KEGG: eoh:ECO103_2546 putative sensor protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; EAL domain protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1824135 11776607 EKO11_1726 Escherichia coli KO11FL PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_005277410.1 1820818 R 595495 CDS YP_005277411.1 378712518 11779462 1824453..1825094 1 NC_016902.1 TIGRFAM: uridine kinase; KEGG: sdy:SDY_2196 uridine kinase; uridine kinase 1825094 11779462 EKO11_1727 Escherichia coli KO11FL uridine kinase YP_005277411.1 1824453 D 595495 CDS YP_005277412.1 378712519 11779463 1825186..1825767 1 NC_016902.1 KEGG: sbc:SbBS512_E1167 deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; deoxycytidine triphosphate deaminase 1825767 11779463 EKO11_1728 Escherichia coli KO11FL deoxycytidine triphosphate deaminase YP_005277412.1 1825186 D 595495 CDS YP_005277413.1 378712520 11776608 1825789..1827642 1 NC_016902.1 PFAM: AsmA family protein; KEGG: eoj:ECO26_2975 putative assembly protein; AsmA family protein 1827642 11776608 EKO11_1729 Escherichia coli KO11FL AsmA family protein YP_005277413.1 1825789 D 595495 CDS YP_005277414.1 378712521 11776609 complement(1827695..1827985) 1 NC_016902.1 KEGG: sdy:SDY_2199 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; transcriptional regulator, XRE family 1827985 11776609 EKO11_1730 Escherichia coli KO11FL transcriptional regulator, XRE family YP_005277414.1 1827695 R 595495 CDS YP_005277415.1 378712522 11776610 complement(1827975..1828313) 1 NC_016902.1 PFAM: protein of unknown function DUF891; KEGG: eok:G2583_2587 hypothetical protein; hypothetical protein 1828313 11776610 EKO11_1731 Escherichia coli KO11FL hypothetical protein YP_005277415.1 1827975 R 595495 CDS YP_005277416.1 378712523 11776611 complement(1828388..1829971) 1 NC_016902.1 PFAM: Integral membrane protein TerC; CBS domain containing protein; transporter-associated region; KEGG: sfv:SFV_2122 putative transport protein; integral membrane protein TerC 1829971 11776611 EKO11_1732 Escherichia coli KO11FL integral membrane protein TerC YP_005277416.1 1828388 R 595495 CDS YP_005277417.1 378712524 11779464 1830630..1831769 1 NC_016902.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: sbc:SbBS512_E1170 polysaccharide biosynthesis/export protein; polysaccharide export protein 1831769 11779464 EKO11_1733 Escherichia coli KO11FL polysaccharide export protein YP_005277417.1 1830630 D 595495 CDS YP_005277418.1 378712525 11776612 1831775..1832218 1 NC_016902.1 KEGG: sbc:SbBS512_E1171 tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase 1832218 11776612 EKO11_1734 Escherichia coli KO11FL protein tyrosine phosphatase YP_005277418.1 1831775 D 595495 CDS YP_005277419.1 378712526 11776613 1832221..1834383 1 NC_016902.1 TIGRFAM: capsular exopolysaccharide family; KEGG: eoh:ECO103_2539 tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family protein 1834383 11776613 EKO11_1735 Escherichia coli KO11FL capsular exopolysaccharide family protein YP_005277419.1 1832221 D 595495 CDS YP_005277420.1 378712527 11776614 1834561..1835400 1 NC_016902.1 PFAM: glycosyl transferase family 2; KEGG: sbo:SBO_0886 putative glycosyl transferase; family 2 glycosyl transferase 1835400 11776614 EKO11_1736 Escherichia coli KO11FL family 2 glycosyl transferase YP_005277420.1 1834561 D 595495 CDS YP_005277421.1 378712528 11776615 1835403..1835891 1 NC_016902.1 KEGG: ssn:SSON_2111 putative colanic acid biosynthesis acetyltransferase WcaB; putative colanic acid biosynthesis acetyltransferase WcaB 1835891 11776615 EKO11_1737 Escherichia coli KO11FL putative colanic acid biosynthesis acetyltransferase WcaB YP_005277421.1 1835403 D 595495 CDS YP_005277422.1 378712529 11776616 1835888..1837105 1 NC_016902.1 PFAM: glycosyl transferase group 1; KEGG: sfv:SFV_2116 putative glycosyl transferase; group 1 glycosyl transferase 1837105 11776616 EKO11_1738 Escherichia coli KO11FL group 1 glycosyl transferase YP_005277422.1 1835888 D 595495 CDS YP_005277423.1 378712530 11776617 1837080..1838297 1 NC_016902.1 KEGG: sbc:SbBS512_E1176 putative colanic acid biosynthesis protein; putative colanic acid biosynthesis protein 1838297 11776617 EKO11_1739 Escherichia coli KO11FL putative colanic acid biosynthesis protein YP_005277423.1 1837080 D 595495 CDS YP_005277424.1 378712531 11776618 1838308..1839054 1 NC_016902.1 PFAM: glycosyl transferase family 2; KEGG: ebd:ECBD_1600 putative glycosyl transferase; family 2 glycosyl transferase 1839054 11776618 EKO11_1740 Escherichia coli KO11FL family 2 glycosyl transferase YP_005277424.1 1838308 D 595495 CDS YP_005277425.1 378712532 11776619 1839070..1839618 1 NC_016902.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: eok:G2583_2577 putative acyl transferase WcaF; transferase hexapeptide repeat containing protein 1839618 11776619 EKO11_1741 Escherichia coli KO11FL transferase hexapeptide repeat containing protein YP_005277425.1 1839070 D 595495 CDS YP_005277426.1 378712533 11776620 1839644..1840765 1 NC_016902.1 KEGG: sbc:SbBS512_E1179 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; GDP-mannose 4,6-dehydratase 1840765 11776620 EKO11_1742 Escherichia coli KO11FL GDP-mannose 4,6-dehydratase YP_005277426.1 1839644 D 595495 CDS YP_005277427.1 378712534 11776621 1840768..1841733 1 NC_016902.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ssn:SSON_2105 putative nucleotide di-P-sugar epimerase or dehydratase; NAD-dependent epimerase/dehydratase 1841733 11776621 EKO11_1743 Escherichia coli KO11FL NAD-dependent epimerase/dehydratase YP_005277427.1 1840768 D 595495 CDS YP_005277428.1 378712535 11776622 1841733..1842215 1 NC_016902.1 PFAM: NUDIX hydrolase; KEGG: ebd:ECBD_1604 NUDIX hydrolase; NUDIX hydrolase 1842215 11776622 EKO11_1744 Escherichia coli KO11FL NUDIX hydrolase YP_005277428.1 1841733 D 595495 CDS YP_005277429.1 378712536 11776623 1842212..1843435 1 NC_016902.1 PFAM: glycosyl transferase group 1; KEGG: etw:ECSP_2805 putative glycosyl transferase; group 1 glycosyl transferase 1843435 11776623 EKO11_1745 Escherichia coli KO11FL group 1 glycosyl transferase YP_005277429.1 1842212 D 595495 CDS YP_005277430.1 378712537 11776624 1843438..1844874 1 NC_016902.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: eoj:ECO26_2960 mannose-1-phosphate guanyltransferase CpsB; PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase type II; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1844874 11776624 EKO11_1746 Escherichia coli KO11FL mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_005277430.1 1843438 D 595495 CDS YP_005277431.1 378712538 11779466 1845067..1846437 1 NC_016902.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: efe:EFER_2132 phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 1846437 11779466 EKO11_1748 Escherichia coli KO11FL phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_005277431.1 1845067 D 595495 CDS YP_005277432.1 378712539 11776625 1846492..1847886 1 NC_016902.1 TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sbo:SBO_0874 putative UDP-glucose lipid carrier transferase; PFAM: sugar transferase; undecaprenyl-phosphate glucose phosphotransferase 1847886 11776625 EKO11_1749 Escherichia coli KO11FL undecaprenyl-phosphate glucose phosphotransferase YP_005277432.1 1846492 D 595495 CDS YP_005277433.1 378712540 11776626 1847888..1849366 1 NC_016902.1 PFAM: polysaccharide biosynthesis protein; KEGG: eoh:ECO103_2525 colanic acid exporter; polysaccharide biosynthesis protein 1849366 11776626 EKO11_1750 Escherichia coli KO11FL polysaccharide biosynthesis protein YP_005277433.1 1847888 D 595495 CDS YP_005277434.1 378712541 11776627 1849368..1849730 1 NC_016902.1 manually curated; KEGG: sfv:SFV_2308 ribonucleotide-diphosphate reductase subunit beta; hypothetical protein 1849730 11776627 EKO11_1751 Escherichia coli KO11FL hypothetical protein YP_005277434.1 1849368 D 595495 CDS YP_005277435.1 378712542 11776628 1849738..1851018 1 NC_016902.1 KEGG: sbo:SBO_0872 putative pyruvyl transferase; putative pyruvyl transferase 1851018 11776628 EKO11_1752 Escherichia coli KO11FL putative pyruvyl transferase YP_005277435.1 1849738 D 595495 CDS YP_005277436.1 378712543 11779467 1851015..1852235 1 NC_016902.1 PFAM: glycosyl transferase group 1; KEGG: ebw:BWG_1834 putative glycosyl transferase; group 1 glycosyl transferase 1852235 11779467 EKO11_1753 Escherichia coli KO11FL group 1 glycosyl transferase YP_005277436.1 1851015 D 595495 CDS YP_005277437.1 378712544 11776629 1852246..1853640 1 NC_016902.1 KEGG: sbo:SBO_0870 putative colanic acid biosynthesis protein; putative colanic acid biosynthesis protein 1853640 11776629 EKO11_1754 Escherichia coli KO11FL putative colanic acid biosynthesis protein YP_005277437.1 1852246 D 595495 CDS YP_005277438.1 378712545 11776630 1853815..1854708 1 NC_016902.1 KEGG: eoh:ECO103_2521 UTP--glucose-1-phosphate uridylyltransferase subunit GalF; TIGRFAM: regulatory protein GalF; PFAM: Nucleotidyl transferase; regulatory protein GalF 1854708 11776630 EKO11_1755 Escherichia coli KO11FL regulatory protein GalF YP_005277438.1 1853815 D 595495 CDS YP_005277439.1 378712546 11776631 1855083..1856321 1 NC_016902.1 PFAM: polysaccharide biosynthesis protein; KEGG: bcl:ABC3687 O-antigen transporter; polysaccharide biosynthesis protein 1856321 11776631 EKO11_1756 Escherichia coli KO11FL polysaccharide biosynthesis protein YP_005277439.1 1855083 D 595495 CDS YP_005277440.1 378712547 11776632 1856321..1857664 1 NC_016902.1 KEGG: tal:Thal_0139 hypothetical protein; hypothetical protein 1857664 11776632 EKO11_1757 Escherichia coli KO11FL hypothetical protein YP_005277440.1 1856321 D 595495 CDS YP_005277441.1 378712548 11776633 1857670..1858530 1 NC_016902.1 PFAM: glycosyl transferase family 2; KEGG: abu:Abu_1811 glycosyltransferase; family 2 glycosyl transferase 1858530 11776633 EKO11_1758 Escherichia coli KO11FL family 2 glycosyl transferase YP_005277441.1 1857670 D 595495 CDS YP_005277442.1 378712549 11776634 1858527..1859558 1 NC_016902.1 PFAM: glycosyl transferase group 1; KEGG: ttm:Tthe_2417 glycogen synthase; group 1 glycosyl transferase 1859558 11776634 EKO11_1759 Escherichia coli KO11FL group 1 glycosyl transferase YP_005277442.1 1858527 D 595495 CDS YP_005277443.1 378712550 11776635 1859545..1860690 1 NC_016902.1 KEGG: trq:TRQ2_0297 glycosyl transferase group 1; hypothetical protein 1860690 11776635 EKO11_1760 Escherichia coli KO11FL hypothetical protein YP_005277443.1 1859545 D 595495 CDS YP_005277444.1 378712551 11776636 1860707..1861714 1 NC_016902.1 KEGG: hsm:HSM_1256 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase 1861714 11776636 EKO11_1761 Escherichia coli KO11FL UDP-glucose 4-epimerase YP_005277444.1 1860707 D 595495 CDS YP_005277445.1 378712552 11776637 1861735..1862940 1 NC_016902.1 PFAM: glycosyl transferase group 1; KEGG: sec:SC2095 hypothetical protein; group 1 glycosyl transferase 1862940 11776637 EKO11_1762 Escherichia coli KO11FL group 1 glycosyl transferase YP_005277445.1 1861735 D 595495 CDS YP_005277446.1 378712553 11776638 1862930..1864369 1 NC_016902.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: enc:ECL_03372 mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase type II; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1864369 11776638 EKO11_1763 Escherichia coli KO11FL mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_005277446.1 1862930 D 595495 CDS YP_005277447.1 378712554 11776639 1864452..1865822 1 NC_016902.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: ssn:SSON_2101 phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 1865822 11776639 EKO11_1764 Escherichia coli KO11FL phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_005277447.1 1864452 D 595495 CDS YP_005277448.1 378712555 11776640 1865986..1867392 1 NC_016902.1 KEGG: eoh:ECO103_2508 6-phosphogluconate dehydrogenase; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain-containing protein; 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase 1867392 11776640 EKO11_1765 Escherichia coli KO11FL 6-phosphogluconate dehydrogenase YP_005277448.1 1865986 D 595495 CDS YP_005277449.1 378712556 11776641 1867641..1868807 1 NC_016902.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: ebd:ECBD_1631 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase ; UDP-glucose/GDP-mannose dehydrogenase dimerisation; nucleotide sugar dehydrogenase 1868807 11776641 EKO11_1766 Escherichia coli KO11FL nucleotide sugar dehydrogenase YP_005277449.1 1867641 D 595495 CDS YP_005277450.1 378712557 11776642 1868953..1869930 1 NC_016902.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: ssn:SSON_2098 regulator of length of O-antigen component of lipopolysaccharide chains; lipopolysaccharide biosynthesis protein 1869930 11776642 EKO11_1767 Escherichia coli KO11FL lipopolysaccharide biosynthesis protein YP_005277450.1 1868953 D 595495 CDS YP_005277451.1 378712558 11776643 complement(1870026..1870634) 1 NC_016902.1 KEGG: ssn:SSON_2097 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP diphosphatase 1870634 11776643 EKO11_1768 Escherichia coli KO11FL phosphoribosyl-ATP diphosphatase YP_005277451.1 1870026 R 595495 CDS YP_005277452.1 378712559 11776644 complement(1870628..1871404) 1 NC_016902.1 KEGG: eoh:ECO103_2504 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; Imidazole glycerol phosphate synthase cyclase subunit 1871404 11776644 EKO11_1769 Escherichia coli KO11FL Imidazole glycerol phosphate synthase cyclase subunit YP_005277452.1 1870628 R 595495 CDS YP_005277453.1 378712560 11776645 complement(1871386..1872123) 1 NC_016902.1 KEGG: sdy:SDY_2217 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 1872123 11776645 EKO11_1770 Escherichia coli KO11FL phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_005277453.1 1871386 R 595495 CDS YP_005277454.1 378712561 11776646 complement(1872123..1872713) 1 NC_016902.1 KEGG: sdy:SDY_2218 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 1872713 11776646 EKO11_1771 Escherichia coli KO11FL imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_005277454.1 1872123 R 595495 CDS YP_005277455.1 378712562 11776647 complement(1872713..1873780) 1 NC_016902.1 TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: efe:EFER_2105 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: imidazoleglycerol-phosphate dehydratase; histidinol-phosphatase 1873780 11776647 EKO11_1772 Escherichia coli KO11FL histidinol-phosphatase YP_005277455.1 1872713 R 595495 CDS YP_005277456.1 378712563 11776648 complement(1873780..1874850) 1 NC_016902.1 KEGG: ebw:BWG_1812 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; histidinol-phosphate aminotransferase 1874850 11776648 EKO11_1773 Escherichia coli KO11FL histidinol-phosphate aminotransferase YP_005277456.1 1873780 R 595495 CDS YP_005277457.1 378712564 11776649 complement(1874847..1876151) 1 NC_016902.1 TIGRFAM: histidinol dehydrogenase; KEGG: efe:EFER_2103 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; histidinol dehydrogenase 1876151 11776649 EKO11_1774 Escherichia coli KO11FL histidinol dehydrogenase YP_005277457.1 1874847 R 595495 CDS YP_005277458.1 378712565 11779468 complement(1876157..1877056) 1 NC_016902.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: sbc:SbBS512_E1213 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; ATP phosphoribosyltransferase 1877056 11779468 EKO11_1775 Escherichia coli KO11FL ATP phosphoribosyltransferase YP_005277458.1 1876157 R 595495 CDS YP_005277459.1 378712566 11776650 1877535..1877786 1 NC_016902.1 TIGRFAM: prevent-host-death family protein; KEGG: sbc:SbBS512_E1214 antitoxin YefM; prevent-host-death family protein 1877786 11776650 EKO11_1776 Escherichia coli KO11FL prevent-host-death family protein YP_005277459.1 1877535 D 595495 CDS YP_005277460.1 378712567 11776651 1877783..1878037 1 NC_016902.1 KEGG: sbc:SbBS512_E1215 toxin YoeB; TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; Txe/YoeB family addiction module toxin 1878037 11776651 EKO11_1777 Escherichia coli KO11FL Txe/YoeB family addiction module toxin YP_005277460.1 1877783 D 595495 CDS YP_005277461.1 378712568 11779469 1878120..1878944 1 NC_016902.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sbo:SBO_0842 putative enzyme of sugar metabolism; 6-phosphogluconate dehydrogenase 1878944 11779469 EKO11_1778 Escherichia coli KO11FL 6-phosphogluconate dehydrogenase YP_005277461.1 1878120 D 595495 CDS YP_005277462.1 378712569 11776652 1878990..1879919 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbc:SbBS512_E1217 transcriptional regulator, LysR family; LysR family transcriptional regulator 1879919 11776652 EKO11_1779 Escherichia coli KO11FL LysR family transcriptional regulator YP_005277462.1 1878990 D 595495 CDS YP_005277463.1 378712570 11776653 1880186..1881544 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2226 putative amino acid/amine transport protein; amino acid permease 1881544 11776653 EKO11_1780 Escherichia coli KO11FL amino acid permease YP_005277463.1 1880186 D 595495 CDS YP_005277464.1 378712571 11779470 1881723..1882781 1 NC_016902.1 KEGG: eoh:ECO103_2491 putative inner membrane protein; manually curated; PFAM: protein of unknown function DUF395 YeeE/YedE; hypothetical protein 1882781 11779470 EKO11_1781 Escherichia coli KO11FL hypothetical protein YP_005277464.1 1881723 D 595495 CDS YP_005277465.1 378712572 11776654 1882795..1883022 1 NC_016902.1 PFAM: SirA-like domain-containing protein; KEGG: sbc:SbBS512_E1220 hypothetical protein; SirA-like domain-containing protein 1883022 11776654 EKO11_1782 Escherichia coli KO11FL SirA-like domain-containing protein YP_005277465.1 1882795 D 595495 CDS YP_005277466.1 378712573 11776655 complement(1883065..1884492) 1 NC_016902.1 PFAM: Exonuclease domain protein; Exonuclease RNase T and DNA polymerase III; KEGG: eoh:ECO103_2489 exonuclease I; SMART: Exonuclease; Exodeoxyribonuclease I 1884492 11776655 EKO11_1783 Escherichia coli KO11FL Exodeoxyribonuclease I YP_005277466.1 1883065 R 595495 CDS YP_005277467.1 378712574 11776656 1884701..1885867 1 NC_016902.1 KEGG: eok:G2583_2530 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; serine-type D-Ala-D-Ala carboxypeptidase 1885867 11776656 EKO11_1784 Escherichia coli KO11FL serine-type D-Ala-D-Ala carboxypeptidase YP_005277467.1 1884701 D 595495 CDS YP_005277468.1 378712575 11776657 1885986..1886459 1 NC_016902.1 PFAM: transcription activator effector binding; KEGG: sbc:SbBS512_E1226 DNA gyrase inhibitor; transcription activator effector binding protein 1886459 11776657 EKO11_1785 Escherichia coli KO11FL transcription activator effector binding protein YP_005277468.1 1885986 D 595495 CDS YP_005277469.1 378712576 11776658 1886657..1887715 1 NC_016902.1 KEGG: eoh:ECO103_2486 hypothetical protein; hypothetical protein 1887715 11776658 EKO11_1786 Escherichia coli KO11FL hypothetical protein YP_005277469.1 1886657 D 595495 CDS YP_005277470.1 378712577 11776659 1887887..1888216 1 NC_016902.1 PFAM: protein of unknown function DUF496; KEGG: sbc:SbBS512_E1230 hypothetical protein; hypothetical protein 1888216 11776659 EKO11_1787 Escherichia coli KO11FL hypothetical protein YP_005277470.1 1887887 D 595495 CDS YP_005277471.1 378712578 11776660 1888678..1889220 1 NC_016902.1 KEGG: sdy:SDY_2240 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; PFAM: cobalbumin biosynthesis protein; adenosylcobinamide-phosphate guanylyltransferase 1889220 11776660 EKO11_1788 Escherichia coli KO11FL adenosylcobinamide-phosphate guanylyltransferase YP_005277471.1 1888678 D 595495 CDS YP_005277472.1 378712579 11776661 1889217..1889960 1 NC_016902.1 KEGG: sbc:SbBS512_E0966 cobalamin synthase; TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; cobalamin 5'-phosphate synthase 1889960 11776661 EKO11_1789 Escherichia coli KO11FL cobalamin 5'-phosphate synthase YP_005277472.1 1889217 D 595495 CDS YP_005277473.1 378712580 11776662 1889972..1891051 1 NC_016902.1 TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: eoh:ECO103_2452 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1891051 11776662 EKO11_1790 Escherichia coli KO11FL nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_005277473.1 1889972 D 595495 CDS YP_005277474.1 378712581 11776663 1891113..1892048 1 NC_016902.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: eoj:ECO26_2880 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1892048 11776663 EKO11_1791 Escherichia coli KO11FL ErfK/YbiS/YcfS/YnhG family protein YP_005277474.1 1891113 D 595495 CDS YP_005277475.1 378712582 11776665 1892506..1893423 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eoh:ECO103_2450 nitrogen assimilation transcriptional regulator; LysR family transcriptional regulator 1893423 11776665 EKO11_1792 Escherichia coli KO11FL LysR family transcriptional regulator YP_005277475.1 1892506 D 595495 CDS YP_005277476.1 378712583 11779471 1893525..1894475 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_2042 transcriptional regulator Cbl; LysR family transcriptional regulator 1894475 11779471 EKO11_1793 Escherichia coli KO11FL LysR family transcriptional regulator YP_005277476.1 1893525 D 595495 CDS YP_005277477.1 378712584 11776667 1894749..1896236 1 NC_016902.1 KEGG: eoh:ECO103_2448 hypothetical protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 1896236 11776667 EKO11_1794 Escherichia coli KO11FL MATE efflux family protein YP_005277477.1 1894749 D 595495 CDS YP_005277478.1 378712585 11779472 complement(1896871..1897587) 1 NC_016902.1 PFAM: protein of unknown function DUF28; KEGG: sbc:SbBS512_E0985 hypothetical protein; hypothetical protein 1897587 11779472 EKO11_1795 Escherichia coli KO11FL hypothetical protein YP_005277478.1 1896871 R 595495 CDS YP_005277479.1 378712586 11776669 complement(1897930..1899384) 1 NC_016902.1 TIGRFAM: AMP nucleosidase; KEGG: ebd:ECBD_1664 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase-like; purine or other phosphorylase family 1; AMP nucleosidase 1899384 11776669 EKO11_1796 Escherichia coli KO11FL AMP nucleosidase YP_005277479.1 1897930 R 595495 CDS YP_005277480.1 378712587 11776670 complement(1899486..1900802) 1 NC_016902.1 KEGG: eoh:ECO103_2445 shikimate transporter; TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1; metabolite/H+ symporter, major facilitator superfamily (MFS) 1900802 11776670 EKO11_1797 Escherichia coli KO11FL metabolite/H+ symporter, major facilitator superfamily (MFS) YP_005277480.1 1899486 R 595495 CDS YP_005277481.1 378712588 11779473 1901117..1902169 1 NC_016902.1 PFAM: glycosyl transferase family 9; KEGG: eoh:ECO103_2444 putative ADP-heptose:LPS heptosyl transferase; glycosyl transferase family protein 1902169 11779473 EKO11_1798 Escherichia coli KO11FL glycosyl transferase family protein YP_005277481.1 1901117 D 595495 CDS YP_005277482.1 378712589 11776672 complement(1909547..1909696) 1 NC_016902.1 KEGG: ebd:ECBD_1668 hypothetical protein; hypothetical protein 1909696 11776672 EKO11_1800 Escherichia coli KO11FL hypothetical protein YP_005277482.1 1909547 R 595495 CDS YP_005277483.1 378712590 11776674 complement(1909996..1910793) 1 NC_016902.1 PFAM: protein of unknown function DUF980; KEGG: eoh:ECO103_2437 hypothetical protein; hypothetical protein 1910793 11776674 EKO11_1801 Escherichia coli KO11FL hypothetical protein YP_005277483.1 1909996 R 595495 CDS YP_005277484.1 378712591 11776676 complement(1911546..1912076) 1 NC_016902.1 KEGG: sbo:SBO_1032 putative cytochrome; putative cytochrome 1912076 11776676 EKO11_1802 Escherichia coli KO11FL putative cytochrome YP_005277484.1 1911546 R 595495 CDS YP_005277485.1 378712592 11776677 complement(1912419..1913069) 1 NC_016902.1 KEGG: ebr:ECB_01888 hypothetical protein; manually curated; PFAM: YodA domain-containing protein; YodA domain-containing protein 1913069 11776677 EKO11_1803 Escherichia coli KO11FL YodA domain-containing protein YP_005277485.1 1912419 R 595495 CDS YP_005277486.1 378712593 11776678 complement(1913326..1913961) 1 NC_016902.1 PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: sbc:SbBS512_E0911 putative sulfite oxidase subunit YedZ; ferric reductase domain-containing transmembrane protein 1913961 11776678 EKO11_1804 Escherichia coli KO11FL ferric reductase domain-containing transmembrane protein YP_005277486.1 1913326 R 595495 CDS YP_005277487.1 378712594 11776679 complement(1913962..1914966) 1 NC_016902.1 PFAM: oxidoreductase molybdopterin binding; KEGG: sbc:SbBS512_E0912 putative sulfite oxidase subunit YedY; oxidoreductase molybdopterin binding protein 1914966 11776679 EKO11_1805 Escherichia coli KO11FL oxidoreductase molybdopterin binding protein YP_005277487.1 1913962 R 595495 CDS YP_005277488.1 378712595 11776680 complement(1915075..1915488) 1 NC_016902.1 SMART: Transthyretin; TIGRFAM: hydroxyisourate hydrolase; KEGG: sfv:SFV_2015 hypothetical protein; PFAM: Transthyretin; hydroxyisourate hydrolase 1915488 11776680 EKO11_1806 Escherichia coli KO11FL hydroxyisourate hydrolase YP_005277488.1 1915075 R 595495 CDS YP_005277489.1 378712596 11776681 1915510..1916292 1 NC_016902.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: eok:G2583_2419 heavy metal response regulator; SMART: response regulator receiver; two component heavy metal response transcriptional regulator, winged helix family 1916292 11776681 EKO11_1807 Escherichia coli KO11FL two component heavy metal response transcriptional regulator, winged helix family YP_005277489.1 1915510 D 595495 CDS YP_005277490.1 378712597 11776682 1916292..1917650 1 NC_016902.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: eoh:ECO103_2216 putative sensory kinase in two-component regulatory system with YedW; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; heavy metal sensor signal transduction histidine kinase 1917650 11776682 EKO11_1808 Escherichia coli KO11FL heavy metal sensor signal transduction histidine kinase YP_005277490.1 1916292 D 595495 CDS YP_005277491.1 378712598 11776683 complement(1917758..1918609) 1 NC_016902.1 PFAM: ThiJ/PfpI domain-containing protein; KEGG: sbc:SbBS512_E0916 chaperone protein HchA; ThiJ/PfpI domain-containing protein 1918609 11776683 EKO11_1809 Escherichia coli KO11FL ThiJ/PfpI domain-containing protein YP_005277491.1 1917758 R 595495 CDS YP_005277492.1 378712599 11776685 complement(1919201..1920316) 1 NC_016902.1 PFAM: porin Gram-negative type; KEGG: eoh:ECO103_2214 putative outer membrane porin protein; porin 1920316 11776685 EKO11_1811 Escherichia coli KO11FL porin YP_005277492.1 1919201 R 595495 CDS YP_005277493.1 378712600 11776686 1920946..1921248 1 NC_016902.1 KEGG: sbo:SBO_1045 hypothetical protein; hypothetical protein 1921248 11776686 EKO11_1812 Escherichia coli KO11FL hypothetical protein YP_005277493.1 1920946 D 595495 CDS YP_005277494.1 378712601 11776687 1921288..1921983 1 NC_016902.1 KEGG: eoh:ECO103_2212 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1921983 11776687 EKO11_1813 Escherichia coli KO11FL metal dependent phosphohydrolase YP_005277494.1 1921288 D 595495 CDS YP_005277495.1 378712602 11776688 1922050..1923468 1 NC_016902.1 TIGRFAM: DNA-cytosine methyltransferase; KEGG: ebd:ECBD_1685 DNA cytosine methylase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 1923468 11776688 EKO11_1814 Escherichia coli KO11FL DNA-cytosine methyltransferase YP_005277495.1 1922050 D 595495 CDS YP_005277496.1 378712603 11776689 1923449..1923919 1 NC_016902.1 KEGG: eoh:ECO103_2210 DNA mismatch endonuclease Vsr of very short patch repair; TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; DNA mismatch endonuclease Vsr 1923919 11776689 EKO11_1815 Escherichia coli KO11FL DNA mismatch endonuclease Vsr YP_005277496.1 1923449 D 595495 CDS YP_005277497.1 378712604 11779474 complement(1923908..1924837) 1 NC_016902.1 KEGG: ebd:ECBD_1687 hypothetical protein; TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; carboxylate/amino acid/amine transporter 1924837 11779474 EKO11_1816 Escherichia coli KO11FL carboxylate/amino acid/amine transporter YP_005277497.1 1923908 R 595495 CDS YP_005277498.1 378712605 11776690 1925010..1925927 1 NC_016902.1 PFAM: protein of unknown function DUF808; KEGG: sbc:SbBS512_E1080 hypothetical protein; hypothetical protein 1925927 11776690 EKO11_1817 Escherichia coli KO11FL hypothetical protein YP_005277498.1 1925010 D 595495 CDS YP_005277499.1 378712606 11776691 1926006..1926188 1 NC_016902.1 PFAM: Protein of unknown function DUF2158; KEGG: sdy:SDY_1049 hypothetical protein; hypothetical protein 1926188 11776691 EKO11_1818 Escherichia coli KO11FL hypothetical protein YP_005277499.1 1926006 D 595495 CDS YP_005277500.1 378712607 11776692 1926359..1928053 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eoh:ECO103_2206 putative diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1928053 11776692 EKO11_1819 Escherichia coli KO11FL diguanylate cyclase YP_005277500.1 1926359 D 595495 CDS YP_005277501.1 378712608 11776693 complement(1928050..1928865) 1 NC_016902.1 TIGRFAM: mannosyl-3-phosphoglycerate phosphatase family protein; mannosyl-3-phosphoglycerate phosphatase family; HAD-superfamily hydrolase, subfamily IIB; KEGG: eoh:ECO103_2205 mannosyl-3-phosphoglycerate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; mannosyl-3-phosphoglycerate phosphatase family protein 1928865 11776693 EKO11_1820 Escherichia coli KO11FL mannosyl-3-phosphoglycerate phosphatase family protein YP_005277501.1 1928050 R 595495 CDS YP_005277502.1 378712609 11776694 complement(1929163..1929390) 1 NC_016902.1 PFAM: Protein of unknown function DUF2525; KEGG: sdy:SDY_1052 hypothetical protein; hypothetical protein 1929390 11776694 EKO11_1821 Escherichia coli KO11FL hypothetical protein YP_005277502.1 1929163 R 595495 CDS YP_005277503.1 378712610 11776695 1929553..1929741 1 NC_016902.1 PFAM: Dextransucrase DSRB; KEGG: sdy:SDY_1053 hypothetical protein; Dextransucrase DSRB 1929741 11776695 EKO11_1822 Escherichia coli KO11FL Dextransucrase DSRB YP_005277503.1 1929553 D 595495 CDS YP_005277504.1 378712611 11776696 complement(1929785..1930408) 1 NC_016902.1 KEGG: sbo:SBO_1056 positive regulator for ctr capsule biosynthesis, positive transcription factor; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; regulatory protein LuxR 1930408 11776696 EKO11_1823 Escherichia coli KO11FL regulatory protein LuxR YP_005277504.1 1929785 R 595495 CDS YP_005277505.1 378712612 11776697 complement(1930698..1931483) 1 NC_016902.1 KEGG: eoh:ECO103_2201 flagellar biosynthesis protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; flagellar biosynthetic protein FliR 1931483 11776697 EKO11_1824 Escherichia coli KO11FL flagellar biosynthetic protein FliR YP_005277505.1 1930698 R 595495 CDS YP_005277506.1 378712613 11776698 complement(1931492..1931761) 1 NC_016902.1 KEGG: sbo:SBO_1058 flagellar biosynthesis protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; flagellar biosynthetic protein FliQ 1931761 11776698 EKO11_1825 Escherichia coli KO11FL flagellar biosynthetic protein FliQ YP_005277506.1 1931492 R 595495 CDS YP_005277507.1 378712614 11776699 complement(1931771..1932508) 1 NC_016902.1 KEGG: sbc:SbBS512_E1069 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP 1932508 11776699 EKO11_1826 Escherichia coli KO11FL flagellar biosynthetic protein FliP YP_005277507.1 1931771 R 595495 CDS YP_005277508.1 378712615 11776700 complement(1932508..1932873) 1 NC_016902.1 TIGRFAM: flagellar biosynthetic protein FliO; KEGG: ssn:SSON_2005 flagellar biosynthesis protein FliO; flagellar biosynthetic protein FliO 1932873 11776700 EKO11_1827 Escherichia coli KO11FL flagellar biosynthetic protein FliO YP_005277508.1 1932508 R 595495 CDS YP_005277509.1 378712616 11776701 complement(1932876..1933289) 1 NC_016902.1 KEGG: sbc:SbBS512_E1067 flagellar motor switch protein FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliN 1933289 11776701 EKO11_1828 Escherichia coli KO11FL flagellar motor switch protein FliN YP_005277509.1 1932876 R 595495 CDS YP_005277510.1 378712617 11776702 complement(1933286..1934290) 1 NC_016902.1 KEGG: sbo:SBO_1062 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM 1934290 11776702 EKO11_1829 Escherichia coli KO11FL flagellar motor switch protein FliM YP_005277510.1 1933286 R 595495 CDS YP_005277511.1 378712618 11776703 complement(1934295..1934759) 1 NC_016902.1 PFAM: flagellar basal body-associated protein FliL; KEGG: eoi:ECO111_2526 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 1934759 11776703 EKO11_1830 Escherichia coli KO11FL flagellar basal body-associated protein FliL YP_005277511.1 1934295 R 595495 CDS YP_005277512.1 378712619 11776704 complement(1934864..1935991) 1 NC_016902.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: eoi:ECO111_2525 flagellar hook-length control protein; flagellar hook-length control protein-like protein 1935991 11776704 EKO11_1831 Escherichia coli KO11FL flagellar hook-length control protein-like protein YP_005277512.1 1934864 R 595495 CDS YP_005277513.1 378712620 11776705 complement(1935988..1936431) 1 NC_016902.1 KEGG: ssn:SSON_2000 flagellar biosynthesis chaperone; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar export FliJ family protein; flagellar export protein FliJ 1936431 11776705 EKO11_1832 Escherichia coli KO11FL flagellar export protein FliJ YP_005277513.1 1935988 R 595495 CDS YP_005277514.1 378712621 11779475 complement(1936450..1937823) 1 NC_016902.1 TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: ssn:SSON_1999 flagellum-specific ATP synthase; SMART: AAA ATPase; FliI/YscN family ATPase 1937823 11779475 EKO11_1833 Escherichia coli KO11FL FliI/YscN family ATPase YP_005277514.1 1936450 R 595495 CDS YP_005277515.1 378712622 11776706 complement(1937823..1938509) 1 NC_016902.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: eoj:ECO26_2827 flagellar assembly protein H; flagellar assembly protein FliH/type III secretion system HrpE 1938509 11776706 EKO11_1834 Escherichia coli KO11FL flagellar assembly protein FliH/type III secretion system HrpE YP_005277515.1 1937823 R 595495 CDS YP_005277516.1 378712623 11776707 complement(1938502..1939497) 1 NC_016902.1 KEGG: ebd:ECBD_1706 flagellar motor switch protein G; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; flagellar motor switch protein FliG 1939497 11776707 EKO11_1835 Escherichia coli KO11FL flagellar motor switch protein FliG YP_005277516.1 1938502 R 595495 CDS YP_005277517.1 378712624 11779476 complement(1939490..1941148) 1 NC_016902.1 KEGG: ebd:ECBD_1707 flagellar MS-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; flagellar M-ring protein FliF 1941148 11779476 EKO11_1836 Escherichia coli KO11FL flagellar M-ring protein FliF YP_005277517.1 1939490 R 595495 CDS YP_005277518.1 378712625 11776708 1941363..1941677 1 NC_016902.1 KEGG: ssn:SSON_1995 flagellar hook-basal body protein FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 1941677 11776708 EKO11_1837 Escherichia coli KO11FL flagellar hook-basal body complex subunit FliE YP_005277518.1 1941363 D 595495 CDS YP_005277519.1 378712626 11776709 1942011..1942343 1 NC_016902.1 PFAM: small multidrug resistance protein; KEGG: ssn:SSON_1994 multidrug efflux protein; small multidrug resistance protein 1942343 11776709 EKO11_1838 Escherichia coli KO11FL small multidrug resistance protein YP_005277519.1 1942011 D 595495 CDS YP_005277520.1 378712627 11776710 1942512..1943063 1 NC_016902.1 PFAM: PEBP family protein; KEGG: eoi:ECO111_2517 putative kinase inhibitor; PEBP family protein 1943063 11776710 EKO11_1839 Escherichia coli KO11FL PEBP family protein YP_005277520.1 1942512 D 595495 CDS YP_005277521.1 378712628 11776711 1943073..1943870 1 NC_016902.1 SMART: Helix-turn-helix, AraC domain; KEGG: eoi:ECO111_2516 putative AraC-type regulatory protein; Helix-turn-helix, AraC domain-containing protein 1943870 11776711 EKO11_1840 Escherichia coli KO11FL Helix-turn-helix, AraC domain-containing protein YP_005277521.1 1943073 D 595495 CDS YP_005277522.1 378712629 11776712 complement(1944600..1945259) 1 NC_016902.1 KEGG: eoi:ECO111_5009 putative IS609 transposase TnpA; manually curated; PFAM: transposase IS200-family protein; transposase IS200-family protein 1945259 11776712 EKO11_1841 Escherichia coli KO11FL transposase IS200-family protein YP_005277522.1 1944600 R 595495 CDS YP_005277523.1 378712630 11776713 1945342..1946490 1 NC_016902.1 KEGG: eoj:ECO26_5373 putative IS609 transposase TnpB; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; Transposase, putative, helix-turn-helix domain; transposase IS605 OrfB; transposase, IS605 OrfB family 1946490 11776713 EKO11_1842 Escherichia coli KO11FL transposase, IS605 OrfB family YP_005277523.1 1945342 D 595495 CDS YP_005277524.1 378712631 11776714 complement(1946530..1947201) 1 NC_016902.1 PFAM: protein of unknown function DUF159; KEGG: eoi:ECO111_2513 hypothetical protein; hypothetical protein 1947201 11776714 EKO11_1843 Escherichia coli KO11FL hypothetical protein YP_005277524.1 1946530 R 595495 CDS YP_005277525.1 378712632 11776715 complement(1947308..1947541) 1 NC_016902.1 PFAM: SirA-like domain-containing protein; KEGG: cko:CKO_01008 hypothetical protein; SirA-like domain-containing protein 1947541 11776715 EKO11_1844 Escherichia coli KO11FL SirA-like domain-containing protein YP_005277525.1 1947308 R 595495 CDS YP_005277526.1 378712633 11776716 complement(1947538..1948743) 1 NC_016902.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: sbo:SBO_1077 putative inner membrane protein; hypothetical protein 1948743 11776716 EKO11_1845 Escherichia coli KO11FL hypothetical protein YP_005277526.1 1947538 R 595495 CDS YP_005277527.1 378712634 11776717 1948930..1949343 1 NC_016902.1 KEGG: sdy:SDY_1087 hypothetical protein; hypothetical protein 1949343 11776717 EKO11_1846 Escherichia coli KO11FL hypothetical protein YP_005277527.1 1948930 D 595495 CDS YP_005277528.1 378712635 11776718 complement(1949377..1950864) 1 NC_016902.1 KEGG: eoi:ECO111_2509 cytoplasmic alpha-amylase; PFAM: alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; alpha amylase 1950864 11776718 EKO11_1847 Escherichia coli KO11FL alpha amylase YP_005277528.1 1949377 R 595495 CDS YP_005277529.1 378712636 11776719 complement(1950942..1951307) 1 NC_016902.1 PFAM: flagellar export chaperone; KEGG: eoi:ECO111_2508 flagellar biosynthesis protein FliT; flagellar export chaperone 1951307 11776719 EKO11_1848 Escherichia coli KO11FL flagellar export chaperone YP_005277529.1 1950942 R 595495 CDS YP_005277530.1 378712637 11779477 complement(1951307..1951717) 1 NC_016902.1 KEGG: sbc:SbBS512_E1055 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; flagellar protein FliS 1951717 11779477 EKO11_1849 Escherichia coli KO11FL flagellar protein FliS YP_005277530.1 1951307 R 595495 CDS YP_005277531.1 378712638 11776720 complement(1951742..1953148) 1 NC_016902.1 PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; flagellin hook IN repeat protein; KEGG: ebd:ECBD_1718 flagellar capping protein; flagellar hook-associated 2 domain-containing protein 1953148 11776720 EKO11_1850 Escherichia coli KO11FL flagellar hook-associated 2 domain-containing protein YP_005277531.1 1951742 R 595495 CDS YP_005277532.1 378712639 11776721 1953414..1955108 1 NC_016902.1 PFAM: flagellin domain protein; KEGG: sbo:SBO_1083 flagellin; flagellin domain-containing protein 1955108 11776721 EKO11_1851 Escherichia coli KO11FL flagellin domain-containing protein YP_005277532.1 1953414 D 595495 CDS YP_005277533.1 378712640 11779478 1955428..1956147 1 NC_016902.1 KEGG: ssn:SSON_1194 flagellar biosynthesis sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; RNA polymerase sigma 28 subunit FliA/WhiG 1956147 11779478 EKO11_1852 Escherichia coli KO11FL RNA polymerase sigma 28 subunit FliA/WhiG YP_005277533.1 1955428 D 595495 CDS YP_005277534.1 378712641 11776722 1956193..1956744 1 NC_016902.1 PFAM: integrase domain protein SAM domain protein; KEGG: eoj:ECO26_2813 flagella biosynthesis protein FliZ; integrase domain-containing protein SAM domain-containing protein 1956744 11776722 EKO11_1853 Escherichia coli KO11FL integrase domain-containing protein SAM domain-containing protein YP_005277534.1 1956193 D 595495 CDS YP_005277535.1 378712642 11776723 1956832..1957632 1 NC_016902.1 manually curated; PFAM: extracellular solute-binding protein family 3; KEGG: sbc:SbBS512_E1048 cystine transporter subunit; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; family 3 extracellular solute-binding protein 1957632 11776723 EKO11_1854 Escherichia coli KO11FL family 3 extracellular solute-binding protein YP_005277535.1 1956832 D 595495 CDS YP_005277536.1 378712643 11776724 1957737..1958723 1 NC_016902.1 KEGG: ebd:ECBD_1723 D-cysteine desulfhydrase; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; D-cysteine desulfhydrase family pyridoxal phosphate-dependent protein 1958723 11776724 EKO11_1855 Escherichia coli KO11FL D-cysteine desulfhydrase family pyridoxal phosphate-dependent protein YP_005277536.1 1957737 D 595495 CDS YP_005277537.1 378712644 11779479 1958738..1959406 1 NC_016902.1 KEGG: ssn:SSON_1200 putative transport system permease protein (former YecC); TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1959406 11779479 EKO11_1856 Escherichia coli KO11FL polar amino acid ABC transporter inner membrane subunit YP_005277537.1 1958738 D 595495 CDS YP_005277538.1 378712645 11776725 1959403..1960155 1 NC_016902.1 KEGG: ssn:SSON_1201 putative amino-acid ABC transporter ATP-binding protein YecC; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1960155 11776725 EKO11_1857 Escherichia coli KO11FL ABC transporter YP_005277538.1 1959403 D 595495 CDS YP_005277539.1 378712646 11776726 1960385..1961107 1 NC_016902.1 KEGG: eoh:ECO103_2172 DNA-binding transcriptional activator SdiA; PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 1961107 11776726 EKO11_1858 Escherichia coli KO11FL LuxR family transcriptional regulator YP_005277539.1 1960385 D 595495 CDS YP_005277540.1 378712647 11776727 complement(1961174..1961398) 1 NC_016902.1 PFAM: Protein of unknown function DUF2594; KEGG: sdy:SDY_1103 hypothetical protein; hypothetical protein 1961398 11776727 EKO11_1859 Escherichia coli KO11FL hypothetical protein YP_005277540.1 1961174 R 595495 CDS YP_005277541.1 378712648 11776728 1961857..1962513 1 NC_016902.1 KEGG: sbc:SbBS512_E1041 response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; two component transcriptional regulator, LuxR family 1962513 11776728 EKO11_1860 Escherichia coli KO11FL two component transcriptional regulator, LuxR family YP_005277541.1 1961857 D 595495 CDS YP_005277542.1 378712649 11776729 1962510..1964342 1 NC_016902.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; helix-hairpin-helix motif; KEGG: ssn:SSON_1205 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1; excinuclease ABC subunit C 1964342 11776729 EKO11_1861 Escherichia coli KO11FL excinuclease ABC subunit C YP_005277542.1 1962510 D 595495 CDS YP_005277543.1 378712650 11776730 1964399..1964947 1 NC_016902.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: sdy:SDY_1106 phosphatidylglycerophosphate synthetase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1964947 11776730 EKO11_1862 Escherichia coli KO11FL CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_005277543.1 1964399 D 595495 CDS YP_005277544.1 378712651 11779480 1965596..1966261 1 NC_016902.1 KEGG: sbo:SBO_1098 hypothetical protein; TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; yecA family protein 1966261 11779480 EKO11_1863 Escherichia coli KO11FL yecA family protein YP_005277544.1 1965596 D 595495 CDS YP_005277545.1 378712652 11776734 complement(1966323..1967534) 1 NC_016902.1 KEGG: ebr:ECB_01875 tyrosine transporter; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease; aromatic amino acid transporter 1967534 11776734 EKO11_1864 Escherichia coli KO11FL aromatic amino acid transporter YP_005277545.1 1966323 R 595495 CDS YP_005277546.1 378712653 11776735 1967725..1967964 1 NC_016902.1 KEGG: sbc:SbBS512_E1032 hypothetical protein; TIGRFAM: Protein of unknown function DUF2492; PFAM: Protein of unknown function DUF2492; hypothetical protein 1967964 11776735 EKO11_1865 Escherichia coli KO11FL hypothetical protein YP_005277546.1 1967725 D 595495 CDS YP_005277547.1 378712654 11779481 complement(1968002..1968499) 1 NC_016902.1 KEGG: sdy:SDY_1113 ferritin; PFAM: Ferritin Dps family protein; ferroxidase 1968499 11779481 EKO11_1866 Escherichia coli KO11FL ferroxidase YP_005277547.1 1968002 R 595495 CDS YP_005277548.1 378712655 11776736 complement(1968670..1968993) 1 NC_016902.1 KEGG: ssn:SSON_1214 hypothetical protein; hypothetical protein 1968993 11776736 EKO11_1867 Escherichia coli KO11FL hypothetical protein YP_005277548.1 1968670 R 595495 CDS YP_005277549.1 378712656 11776737 1969457..1969708 1 NC_016902.1 KEGG: sdy:SDY_1117 hypothetical protein; hypothetical protein 1969708 11776737 EKO11_1868 Escherichia coli KO11FL hypothetical protein YP_005277549.1 1969457 D 595495 CDS YP_005277550.1 378712657 11776738 complement(1969787..1970290) 1 NC_016902.1 PFAM: Ferritin Dps family protein; KEGG: sdy:SDY_1116 ferritin-like protein; ferritin Dps family protein 1970290 11776738 EKO11_1869 Escherichia coli KO11FL ferritin Dps family protein YP_005277550.1 1969787 R 595495 CDS YP_005277551.1 378712658 11776739 1971087..1972076 1 NC_016902.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ebd:ECBD_1740 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1972076 11776739 EKO11_1870 Escherichia coli KO11FL periplasmic binding protein/LacI transcriptional regulator YP_005277551.1 1971087 D 595495 CDS YP_005277552.1 378712659 11779482 1972146..1973660 1 NC_016902.1 KEGG: eoh:ECO103_2159 L-arabinose transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1973660 11779482 EKO11_1871 Escherichia coli KO11FL ABC transporter YP_005277552.1 1972146 D 595495 CDS YP_005277553.1 378712660 11776740 1973675..1974661 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E1023 L-arabinose transporter permease protein; inner-membrane translocator 1974661 11776740 EKO11_1872 Escherichia coli KO11FL inner-membrane translocator YP_005277553.1 1973675 D 595495 CDS YP_005277554.1 378712661 11776741 1974828..1975628 1 NC_016902.1 TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; KEGG: ssn:SSON_1220 trehalose-6-phosphate phosphatase; PFAM: trehalose-phosphatase; trehalose-phosphatase 1975628 11776741 EKO11_1873 Escherichia coli KO11FL trehalose-phosphatase YP_005277554.1 1974828 D 595495 CDS YP_005277555.1 378712662 11779483 1975603..1977027 1 NC_016902.1 TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; KEGG: sdy:SDY_1193 trehalose-6-phosphate synthase; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase (UDP-forming) 1977027 11779483 EKO11_1874 Escherichia coli KO11FL alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_005277555.1 1975603 D 595495 CDS YP_005277556.1 378712663 11776742 complement(1977034..1977462) 1 NC_016902.1 PFAM: UspA domain-containing protein; KEGG: sbo:SBO_1113 universal stress protein UspC; UspA domain-containing protein 1977462 11776742 EKO11_1875 Escherichia coli KO11FL UspA domain-containing protein YP_005277556.1 1977034 R 595495 CDS YP_005277557.1 378712664 11776743 1978242..1978592 1 NC_016902.1 PFAM: flagellar transcriptional activator; KEGG: sdy:SDY_1191 transcriptional activator FlhD; flagellar transcriptional activator 1978592 11776743 EKO11_1876 Escherichia coli KO11FL flagellar transcriptional activator YP_005277557.1 1978242 D 595495 CDS YP_005277558.1 378712665 11776744 1978595..1979173 1 NC_016902.1 PFAM: flagellar transcriptional activator FlhC; KEGG: ssn:SSON_1226 transcriptional activator FlhC; flagellar transcriptional activator FlhC 1979173 11776744 EKO11_1877 Escherichia coli KO11FL flagellar transcriptional activator FlhC YP_005277558.1 1978595 D 595495 CDS YP_005277559.1 378712666 11776745 1979300..1980187 1 NC_016902.1 KEGG: eoi:ECO111_2476 flagellar motor protein MotA; flagellar motor protein MotA 1980187 11776745 EKO11_1878 Escherichia coli KO11FL flagellar motor protein MotA YP_005277559.1 1979300 D 595495 CDS YP_005277560.1 378712667 11776746 1980184..1981110 1 NC_016902.1 PFAM: OmpA/MotB domain protein; KEGG: ebd:ECBD_1749 flagellar motor protein MotB; OmpA/MotB domain-containing protein 1981110 11776746 EKO11_1879 Escherichia coli KO11FL OmpA/MotB domain-containing protein YP_005277560.1 1980184 D 595495 CDS YP_005277561.1 378712668 11776747 1981115..1983079 1 NC_016902.1 KEGG: eoh:ECO103_2150 chemotaxis protein CheA; PFAM: CheY binding protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; ATP-binding region ATPase domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; CheA signal transduction histidine kinase 1983079 11776747 EKO11_1880 Escherichia coli KO11FL CheA signal transduction histidine kinase YP_005277561.1 1981115 D 595495 CDS YP_005277562.1 378712669 11776748 1983100..1983603 1 NC_016902.1 KEGG: ssn:SSON_1230 purine-binding chemotaxis protein; PFAM: CheW domain protein; SMART: CheW domain protein; CheW protein 1983603 11776748 EKO11_1881 Escherichia coli KO11FL CheW protein YP_005277562.1 1983100 D 595495 CDS YP_005277563.1 378712670 11776749 1983748..1985409 1 NC_016902.1 KEGG: ebd:ECBD_1752 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 1985409 11776749 EKO11_1882 Escherichia coli KO11FL methyl-accepting chemotaxis sensory transducer YP_005277563.1 1983748 D 595495 CDS YP_005277564.1 378712671 11776750 1985455..1987056 1 NC_016902.1 KEGG: sbc:SbBS512_E2178 methyl-accepting protein IV; PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 1987056 11776750 EKO11_1883 Escherichia coli KO11FL methyl-accepting chemotaxis sensory transducer YP_005277564.1 1985455 D 595495 CDS YP_005277565.1 378712672 11776751 1987075..1987935 1 NC_016902.1 PFAM: MCP methyltransferase CheR-type; KEGG: ebw:BWG_1698 chemotaxis methyltransferase CheR; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR 1987935 11776751 EKO11_1884 Escherichia coli KO11FL chemotaxis protein CheR YP_005277565.1 1987075 D 595495 CDS YP_005277566.1 378712673 11776752 1987938..1988987 1 NC_016902.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: eoh:ECO103_2145 chemotaxis-specific methylesterase; SMART: response regulator receiver; response regulator receiver modulated CheB methylesterase 1988987 11776752 EKO11_1885 Escherichia coli KO11FL response regulator receiver modulated CheB methylesterase YP_005277566.1 1987938 D 595495 CDS YP_005277567.1 378712674 11776753 1989002..1989391 1 NC_016902.1 KEGG: ssn:SSON_1235 chemotaxis regulatory protein CheY; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 1989391 11776753 EKO11_1886 Escherichia coli KO11FL response regulator receiver protein YP_005277567.1 1989002 D 595495 CDS YP_005277568.1 378712675 11776754 1989402..1990046 1 NC_016902.1 PFAM: Chemotaxis phosphatase CheZ; KEGG: sbo:SBO_1119 chemotaxis regulator CheZ; chemotaxis phosphatase, CheZ 1990046 11776754 EKO11_1887 Escherichia coli KO11FL chemotaxis phosphatase, CheZ YP_005277568.1 1989402 D 595495 CDS YP_005277569.1 378712676 11776755 1990248..1991396 1 NC_016902.1 KEGG: eoh:ECO103_2142 flagellar biosynthesis protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; flagellar biosynthetic protein FlhB 1991396 11776755 EKO11_1888 Escherichia coli KO11FL flagellar biosynthetic protein FlhB YP_005277569.1 1990248 D 595495 CDS YP_005277570.1 378712677 11776756 1991389..1993467 1 NC_016902.1 KEGG: eoi:ECO111_2465 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; flagellar biosynthesis protein FlhA 1993467 11776756 EKO11_1889 Escherichia coli KO11FL flagellar biosynthesis protein FlhA YP_005277570.1 1991389 D 595495 CDS YP_005277571.1 378712678 11776757 1993467..1993859 1 NC_016902.1 PFAM: flagellar FlhE family protein; KEGG: sbc:SbBS512_E2171 flagellar protein FlhE; flagellar FlhE family protein 1993859 11776757 EKO11_1890 Escherichia coli KO11FL flagellar FlhE family protein YP_005277571.1 1993467 D 595495 CDS YP_005277572.1 378712679 11779484 complement(1993979..1994467) 1 NC_016902.1 KEGG: eoh:ECO103_2139 hypothetical protein; hypothetical protein 1994467 11779484 EKO11_1891 Escherichia coli KO11FL hypothetical protein YP_005277572.1 1993979 R 595495 CDS YP_005277573.1 378712680 11776758 complement(1994644..1996377) 1 NC_016902.1 TIGRFAM: arginyl-tRNA synthetase; KEGG: sbc:SbBS512_E2169 arginyl-tRNA synthetase; arginyl-tRNA synthetase 1996377 11776758 EKO11_1892 Escherichia coli KO11FL arginyl-tRNA synthetase YP_005277573.1 1994644 R 595495 CDS YP_005277574.1 378712681 11776759 1996593..1997159 1 NC_016902.1 PFAM: protein of unknown function DUF991; KEGG: ebd:ECBD_1763 hypothetical protein; hypothetical protein 1997159 11776759 EKO11_1893 Escherichia coli KO11FL hypothetical protein YP_005277574.1 1996593 D 595495 CDS YP_005277575.1 378712682 11776760 1997173..1997919 1 NC_016902.1 PFAM: CutC family protein; KEGG: ssn:SSON_1244 copper homeostasis protein CutC; CutC family protein 1997919 11776760 EKO11_1894 Escherichia coli KO11FL CutC family protein YP_005277575.1 1997173 D 595495 CDS YP_005277576.1 378712683 11776761 1998307..1999407 1 NC_016902.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: eoh:ECO103_2135 TMAO reductase III (TorYZ), cytochrome c-type subunit TorY; NapC/NirT cytochrome c domain protein 1999407 11776761 EKO11_1895 Escherichia coli KO11FL NapC/NirT cytochrome c domain protein YP_005277576.1 1998307 D 595495 CDS YP_005277577.1 378712684 11776762 1999432..2001861 1 NC_016902.1 TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; KEGG: sbc:SbBS512_E2165 trimethylamine N-oxide reductase III, subunit TorZ; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 2001861 11776762 EKO11_1896 Escherichia coli KO11FL molybdopterin guanine dinucleotide-containing S/N-oxide reductase YP_005277577.1 1999432 D 595495 CDS YP_005277578.1 378712685 11776763 complement(2002026..2002997) 1 NC_016902.1 KEGG: ssn:SSON_1249 putative enzyme; TIGRFAM: methyltransferase; PFAM: methyltransferase; methyltransferase 2002997 11776763 EKO11_1897 Escherichia coli KO11FL methyltransferase YP_005277578.1 2002026 R 595495 CDS YP_005277579.1 378712686 11776764 complement(2002994..2003737) 1 NC_016902.1 KEGG: sdy:SDY_1169 hypothetical protein; TIGRFAM: methyltransferase; PFAM: Methyltransferase type 12; methyltransferase 2003737 11776764 EKO11_1898 Escherichia coli KO11FL methyltransferase YP_005277579.1 2002994 R 595495 CDS YP_005277580.1 378712687 11776765 complement(2003778..2004173) 1 NC_016902.1 KEGG: sdy:SDY_1168 hypothetical protein; hypothetical protein 2004173 11776765 EKO11_1899 Escherichia coli KO11FL hypothetical protein YP_005277580.1 2003778 R 595495 CDS YP_005277581.1 378712688 11776766 complement(2004226..2005044) 1 NC_016902.1 PFAM: protein of unknown function DUF72; KEGG: ebd:ECBD_1770 hypothetical protein; hypothetical protein 2005044 11776766 EKO11_1900 Escherichia coli KO11FL hypothetical protein YP_005277581.1 2004226 R 595495 CDS YP_005277582.1 378712689 11776767 complement(2005041..2005607) 1 NC_016902.1 PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_1274 hypothetical protein; isochorismatase hydrolase 2005607 11776767 EKO11_1901 Escherichia coli KO11FL isochorismatase hydrolase YP_005277582.1 2005041 R 595495 CDS YP_005277583.1 378712690 11776768 2005917..2007689 1 NC_016902.1 KEGG: sbc:SbBS512_E1106 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; aspartyl-tRNA synthetase 2007689 11776768 EKO11_1902 Escherichia coli KO11FL aspartyl-tRNA synthetase YP_005277583.1 2005917 D 595495 CDS YP_005277584.1 378712691 11776769 2007750..2008259 1 NC_016902.1 PFAM: NUDIX hydrolase; KEGG: ebd:ECBD_1773 dATP pyrophosphohydrolase; NUDIX hydrolase 2008259 11776769 EKO11_1903 Escherichia coli KO11FL NUDIX hydrolase YP_005277584.1 2007750 D 595495 CDS YP_005277585.1 378712692 11776770 2008288..2009028 1 NC_016902.1 PFAM: protein of unknown function DUF28; KEGG: efe:EFER_1208 hypothetical protein; hypothetical protein 2009028 11776770 EKO11_1904 Escherichia coli KO11FL hypothetical protein YP_005277585.1 2008288 D 595495 CDS YP_005277586.1 378712693 11776771 2009063..2009584 1 NC_016902.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: sdy:SDY_1150 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 2009584 11776771 EKO11_1905 Escherichia coli KO11FL crossover junction endodeoxyribonuclease RuvC YP_005277586.1 2009063 D 595495 CDS YP_005277587.1 378712694 11776772 complement(2009586..2010188) 1 NC_016902.1 KEGG: eoi:ECO111_2384 hypothetical protein; hypothetical protein 2010188 11776772 EKO11_1906 Escherichia coli KO11FL hypothetical protein YP_005277587.1 2009586 R 595495 CDS YP_005277588.1 378712695 11776773 2010463..2011074 1 NC_016902.1 KEGG: eoi:ECO111_2383 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; Holliday junction DNA helicase RuvA 2011074 11776773 EKO11_1907 Escherichia coli KO11FL Holliday junction DNA helicase RuvA YP_005277588.1 2010463 D 595495 CDS YP_005277589.1 378712696 11779485 2011083..2012093 1 NC_016902.1 TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; KEGG: sdy:SDY_1147 Holliday junction DNA helicase RuvB; SMART: AAA ATPase; Holliday junction DNA helicase RuvB 2012093 11779485 EKO11_1908 Escherichia coli KO11FL Holliday junction DNA helicase RuvB YP_005277589.1 2011083 D 595495 CDS YP_005277590.1 378712697 11776774 2012361..2013341 1 NC_016902.1 KEGG: eoh:ECO103_4940 putative IS621 transposase; PFAM: transposase IS116/IS110/IS902 family protein; SMART: Helix-hairpin-helix DNA-binding class 1; transposase IS116/IS110/IS902 family protein 2013341 11776774 EKO11_1909 Escherichia coli KO11FL transposase IS116/IS110/IS902 family protein YP_005277590.1 2012361 D 595495 CDS YP_005277591.1 378712698 11776775 complement(2013520..2014305) 1 NC_016902.1 PFAM: ABC-3 protein; KEGG: eoh:ECO103_2049 high-affinity zinc transporter membrane component; ABC-3 protein 2014305 11776775 EKO11_1910 Escherichia coli KO11FL ABC-3 protein YP_005277591.1 2013520 R 595495 CDS YP_005277592.1 378712699 11779486 complement(2014302..2015057) 1 NC_016902.1 KEGG: sbo:SBO_1175 high-affinity zinc transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2015057 11779486 EKO11_1911 Escherichia coli KO11FL ABC transporter YP_005277592.1 2014302 R 595495 CDS YP_005277593.1 378712700 11776776 2015136..2016068 1 NC_016902.1 PFAM: periplasmic solute binding protein; KEGG: sfx:S1933 high-affinity zinc transporter periplasmic component; periplasmic solute binding protein 2016068 11776776 EKO11_1912 Escherichia coli KO11FL periplasmic solute binding protein YP_005277593.1 2015136 D 595495 CDS YP_005277594.1 378712701 11776777 2016084..2017406 1 NC_016902.1 KEGG: sbc:SbBS512_E0952 hypothetical protein; PFAM: Peptidase M23; Opacity-associated protein A domain protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; peptidase M23 2017406 11776777 EKO11_1913 Escherichia coli KO11FL peptidase M23 YP_005277594.1 2016084 D 595495 CDS YP_005277595.1 378712702 11779487 2017526..2018497 1 NC_016902.1 KEGG: ssn:SSON_1286 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; TIGRFAM: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; PFAM: lipid A biosynthesis acyltransferase; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2018497 11779487 EKO11_1914 Escherichia coli KO11FL lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_005277595.1 2017526 D 595495 CDS YP_005277596.1 378712703 11776778 complement(2018629..2020071) 1 NC_016902.1 TIGRFAM: pyruvate kinase; KEGG: sbc:SbBS512_E2130 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 2020071 11776778 EKO11_1915 Escherichia coli KO11FL pyruvate kinase YP_005277596.1 2018629 R 595495 CDS YP_005277597.1 378712704 11776779 complement(2020199..2021068) 1 NC_016902.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sbo:SBO_1161 DNA-binding transcriptional regulator HexR; RpiR family transcriptional regulator 2021068 11776779 EKO11_1916 Escherichia coli KO11FL RpiR family transcriptional regulator YP_005277597.1 2020199 R 595495 CDS YP_005277598.1 378712705 11776780 2021091..2021240 1 NC_016902.1 KEGG: ebd:ECBD_1786 hypothetical protein; hypothetical protein 2021240 11776780 EKO11_1917 Escherichia coli KO11FL hypothetical protein YP_005277598.1 2021091 D 595495 CDS YP_005277599.1 378712706 11779488 2021406..2022881 1 NC_016902.1 TIGRFAM: glucose-6-phosphate 1-dehydrogenase; KEGG: sdy:SDY_1138 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 2022881 11779488 EKO11_1918 Escherichia coli KO11FL glucose-6-phosphate 1-dehydrogenase YP_005277599.1 2021406 D 595495 CDS YP_005277600.1 378712707 11776781 2023116..2024927 1 NC_016902.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: ebd:ECBD_1788 phosphogluconate dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; 6-phosphogluconate dehydratase 2024927 11776781 EKO11_1919 Escherichia coli KO11FL 6-phosphogluconate dehydratase YP_005277600.1 2023116 D 595495 CDS YP_005277601.1 378712708 11776782 2024964..2025605 1 NC_016902.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: sbc:SbBS512_E2125 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 2025605 11776782 EKO11_1920 Escherichia coli KO11FL 2-dehydro-3-deoxyphosphogluconate aldolase YP_005277601.1 2024964 D 595495 CDS YP_005277602.1 378712709 11776783 complement(2025661..2026839) 1 NC_016902.1 TIGRFAM: phosphoribosylglycinamide formyltransferase 2; KEGG: ebd:ECBD_1790 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide formyltransferase 2 2026839 11776783 EKO11_1921 Escherichia coli KO11FL phosphoribosylglycinamide formyltransferase 2 YP_005277602.1 2025661 R 595495 CDS YP_005277603.1 378712710 11776784 2026973..2027263 1 NC_016902.1 PFAM: YebG family protein; KEGG: sdy:SDY_1134 DNA damage-inducible protein YebG; hypothetical protein 2027263 11776784 EKO11_1922 Escherichia coli KO11FL hypothetical protein YP_005277603.1 2026973 D 595495 CDS YP_005277604.1 378712711 11776785 2027330..2027686 1 NC_016902.1 KEGG: sbc:SbBS512_E2122 hypothetical protein; hypothetical protein 2027686 11776785 EKO11_1923 Escherichia coli KO11FL hypothetical protein YP_005277604.1 2027330 D 595495 CDS YP_005277605.1 378712712 11776786 complement(2027842..2027952) 1 NC_016902.1 KEGG: ebd:ECBD_1793 hypothetical protein; hypothetical protein 2027952 11776786 EKO11_1924 Escherichia coli KO11FL hypothetical protein YP_005277605.1 2027842 R 595495 CDS YP_005277606.1 378712713 11776787 2028012..2028671 1 NC_016902.1 PFAM: protein of unknown function DUF533; KEGG: ssn:SSON_1302 hypothetical protein; hypothetical protein 2028671 11776787 EKO11_1925 Escherichia coli KO11FL hypothetical protein YP_005277606.1 2028012 D 595495 CDS YP_005277607.1 378712714 11776788 2028880..2030940 1 NC_016902.1 KEGG: eoj:ECO26_2683 protease 2; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; oligopeptidase B 2030940 11776788 EKO11_1926 Escherichia coli KO11FL oligopeptidase B YP_005277607.1 2028880 D 595495 CDS YP_005277608.1 378712715 11776789 complement(2030937..2031599) 1 NC_016902.1 KEGG: sdy:SDY_1130 exodeoxyribonuclease X; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; Exonuclease RNase T and DNA polymerase III 2031599 11776789 EKO11_1927 Escherichia coli KO11FL Exonuclease RNase T and DNA polymerase III YP_005277608.1 2030937 R 595495 CDS YP_005277609.1 378712716 11779489 complement(2031623..2032279) 1 NC_016902.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sbc:SbBS512_E2118 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2032279 11779489 EKO11_1928 Escherichia coli KO11FL nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_005277609.1 2031623 R 595495 CDS YP_005277610.1 378712717 11776790 complement(2032381..2032611) 1 NC_016902.1 KEGG: sdy:SDY_1128 DNA polymerase III subunit theta; PFAM: DNA polymerase II beta subunit; DNA-directed DNA polymerase 2032611 11776790 EKO11_1929 Escherichia coli KO11FL DNA-directed DNA polymerase YP_005277610.1 2032381 R 595495 CDS YP_005277611.1 378712718 11776791 2032750..2033124 1 NC_016902.1 PFAM: copper resistance protein CopC; KEGG: eoi:ECO111_2349 hypothetical protein; copper resistance protein CopC 2033124 11776791 EKO11_1930 Escherichia coli KO11FL copper resistance protein CopC YP_005277611.1 2032750 D 595495 CDS YP_005277612.1 378712719 11776792 2033128..2034000 1 NC_016902.1 KEGG: eoh:ECO103_2031 putative inner membrane protein; putative inner membrane protein 2034000 11776792 EKO11_1931 Escherichia coli KO11FL putative inner membrane protein YP_005277612.1 2033128 D 595495 CDS YP_005277613.1 378712720 11776793 2034013..2034354 1 NC_016902.1 PFAM: Protein of unknown function DUF2511; KEGG: sdy:SDY_1125 hypothetical protein; hypothetical protein 2034354 11776793 EKO11_1932 Escherichia coli KO11FL hypothetical protein YP_005277613.1 2034013 D 595495 CDS YP_005277614.1 378712721 11776794 2034750..2035406 1 NC_016902.1 PFAM: metallophosphoesterase; KEGG: sbo:SBO_1253 serine/threonine protein phosphatase 1; metallophosphoesterase 2035406 11776794 EKO11_1933 Escherichia coli KO11FL metallophosphoesterase YP_005277614.1 2034750 D 595495 CDS YP_005277615.1 378712722 11776795 complement(2035407..2035682) 1 NC_016902.1 PFAM: protein of unknown function DUF1482; KEGG: ssn:SSON_1324 hypothetical protein; hypothetical protein 2035682 11776795 EKO11_1934 Escherichia coli KO11FL hypothetical protein YP_005277615.1 2035407 R 595495 CDS YP_005277616.1 378712723 11776796 complement(2035703..2035939) 1 NC_016902.1 PFAM: protein of unknown function DUF1480; KEGG: sdy:SDY_1987 hypothetical protein; hypothetical protein 2035939 11776796 EKO11_1935 Escherichia coli KO11FL hypothetical protein YP_005277616.1 2035703 R 595495 CDS YP_005277617.1 378712724 11776797 complement(2036057..2037502) 1 NC_016902.1 KEGG: eoj:ECO26_2605 rRNA (cytosine-C(5)-)-methyltransferase RsmF; TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein; RNA methylase 2037502 11776797 EKO11_1936 Escherichia coli KO11FL RNA methylase YP_005277617.1 2036057 R 595495 CDS YP_005277618.1 378712725 11776798 complement(2037576..2040209) 1 NC_016902.1 PFAM: Mammalian cell entry related domain protein; KEGG: ebd:ECBD_1806 mammalian cell entry related domain protein; Mammalian cell entry related domain-containing protein 2040209 11776798 EKO11_1937 Escherichia coli KO11FL Mammalian cell entry related domain-containing protein YP_005277618.1 2037576 R 595495 CDS YP_005277619.1 378712726 11779490 complement(2040178..2041461) 1 NC_016902.1 KEGG: eoh:ECO103_2024 hypothetical protein; TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; PqiA family integral membrane protein 2041461 11779490 EKO11_1938 Escherichia coli KO11FL PqiA family integral membrane protein YP_005277619.1 2040178 R 595495 CDS YP_005277620.1 378712727 11776799 2041537..2042088 1 NC_016902.1 KEGG: sbc:SbBS512_E2100 GAF domain protein; PFAM: GAF domain protein; SMART: GAF domain protein; putative GAF sensor protein 2042088 11776799 EKO11_1939 Escherichia coli KO11FL putative GAF sensor protein YP_005277620.1 2041537 D 595495 CDS YP_005277621.1 378712728 11776800 2042185..2042883 1 NC_016902.1 PFAM: Fertility inhibition FinO-like; KEGG: sbo:SBO_1246 putative solute/DNA competence effector; Fertility inhibition FinO-like protein 2042883 11776800 EKO11_1940 Escherichia coli KO11FL Fertility inhibition FinO-like protein YP_005277621.1 2042185 D 595495 CDS YP_005277622.1 378712729 11776801 2042903..2044951 1 NC_016902.1 SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: sbc:SbBS512_E2098 carboxy-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 2044951 11776801 EKO11_1941 Escherichia coli KO11FL carboxyl-terminal protease YP_005277622.1 2042903 D 595495 CDS YP_005277623.1 378712730 11776802 2045143..2046024 1 NC_016902.1 PFAM: peptidase M48 Ste24p; KEGG: sdy:SDY_1977 heat shock protein HtpX; peptidase M48 Ste24p 2046024 11776802 EKO11_1942 Escherichia coli KO11FL peptidase M48 Ste24p YP_005277623.1 2045143 D 595495 CDS YP_005277624.1 378712731 11776803 complement(2046070..2047443) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E2096 transporter, major facilitator family; major facilitator superfamily protein 2047443 11776803 EKO11_1943 Escherichia coli KO11FL major facilitator superfamily protein YP_005277624.1 2046070 R 595495 CDS YP_005277625.1 378712732 11776804 2047620..2048411 1 NC_016902.1 KEGG: ssn:SSON_1334 putative regulator; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; IclR family transcriptional regulator 2048411 11776804 EKO11_1944 Escherichia coli KO11FL IclR family transcriptional regulator YP_005277625.1 2047620 D 595495 CDS YP_005277626.1 378712733 11776805 complement(2048554..2048793) 1 NC_016902.1 KEGG: sdy:SDY_1974 hypothetical protein; hypothetical protein 2048793 11776805 EKO11_1945 Escherichia coli KO11FL hypothetical protein YP_005277626.1 2048554 R 595495 CDS YP_005277627.1 378712734 11776806 complement(2048913..2049101) 1 NC_016902.1 manually curated; KEGG: cko:CKO_01150 hypothetical protein; hypothetical protein 2049101 11776806 EKO11_1946 Escherichia coli KO11FL hypothetical protein YP_005277627.1 2048913 R 595495 CDS YP_005277628.1 378712735 11776807 2049170..2049457 1 NC_016902.1 KEGG: ebd:ECBD_1816 uncharacterized protein YebO; hypothetical protein 2049457 11776807 EKO11_1947 Escherichia coli KO11FL hypothetical protein YP_005277628.1 2049170 D 595495 CDS YP_005277629.1 378712736 11776808 2050127..2050270 1 NC_016902.1 KEGG: sdy:SDY_1970 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2627; hypothetical protein 2050270 11776808 EKO11_1948 Escherichia coli KO11FL hypothetical protein YP_005277629.1 2050127 D 595495 CDS YP_005277630.1 378712737 11776809 2050283..2050492 1 NC_016902.1 KEGG: cro:ROD_18621 cold shock-like protein CspC; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock protein 2050492 11776809 EKO11_1949 Escherichia coli KO11FL cold-shock protein YP_005277630.1 2050283 D 595495 CDS YP_005277631.1 378712738 11779491 2050658..2051467 1 NC_016902.1 KEGG: eoh:ECO103_2012 23S rRNA methyltransferase A; PFAM: Methyltransferase type 11; rRNA (guanine-N(1)-)-methyltransferase 2051467 11779491 EKO11_1950 Escherichia coli KO11FL rRNA (guanine-N(1)-)-methyltransferase YP_005277631.1 2050658 D 595495 CDS YP_005277632.1 378712739 11776810 complement(2051464..2052084) 1 NC_016902.1 KEGG: sdy:SDY_1967 hypothetical protein; manually curated; PFAM: protein of unknown function DUF204; hypothetical protein 2052084 11776810 EKO11_1951 Escherichia coli KO11FL hypothetical protein YP_005277632.1 2051464 R 595495 CDS YP_005277633.1 378712740 11776811 complement(2052459..2052917) 1 NC_016902.1 PFAM: protein of unknown function DUF986; KEGG: sdy:SDY_1966 hypothetical protein; hypothetical protein 2052917 11776811 EKO11_1952 Escherichia coli KO11FL hypothetical protein YP_005277633.1 2052459 R 595495 CDS YP_005277634.1 378712741 11776812 complement(2052972..2053823) 1 NC_016902.1 KEGG: sbo:SBO_1231 mannose-specific PTS system protein IID; TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; PTS system mannose/fructose/sorbose family transporter subunit IID 2053823 11776812 EKO11_1953 Escherichia coli KO11FL PTS system mannose/fructose/sorbose family transporter subunit IID YP_005277634.1 2052972 R 595495 CDS YP_005277635.1 378712742 11776813 complement(2053836..2054636) 1 NC_016902.1 KEGG: sbc:SbBS512_E2084 PTS system, mannose-specific IIC component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; PTS system mannose/fructose/sorbose family transporter subunit IIC 2054636 11776813 EKO11_1954 Escherichia coli KO11FL PTS system mannose/fructose/sorbose family transporter subunit IIC YP_005277635.1 2053836 R 595495 CDS YP_005277636.1 378712743 11776814 complement(2054699..2055670) 1 NC_016902.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PTS system, mannose/fructose/sorbose family, IIB subunit; KEGG: sbc:SbBS512_E2083 PTS system, mannose-specific IIAB component; PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component; PTS system mannose/fructose/sorbose family transporter subunit IIA 2055670 11776814 EKO11_1955 Escherichia coli KO11FL PTS system mannose/fructose/sorbose family transporter subunit IIA YP_005277636.1 2054699 R 595495 CDS YP_005277637.1 378712744 11776815 2055936..2056145 1 NC_016902.1 KEGG: ebd:ECBD_1825 putative cytoplasmic protein; putative cytoplasmic protein 2056145 11776815 EKO11_1956 Escherichia coli KO11FL putative cytoplasmic protein YP_005277637.1 2055936 D 595495 CDS YP_005277638.1 378712745 11779492 2056133..2057689 1 NC_016902.1 PFAM: Integral membrane protein TerC; CBS domain containing protein; transporter-associated region; KEGG: ebd:ECBD_1826 integral membrane protein TerC; integral membrane protein TerC 2057689 11779492 EKO11_1957 Escherichia coli KO11FL integral membrane protein TerC YP_005277638.1 2056133 D 595495 CDS YP_005277639.1 378712746 11776816 complement(2057693..2059291) 1 NC_016902.1 KEGG: ebd:ECBD_1827 diguanylate phosphodiesterase; PFAM: EAL domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase 2059291 11776816 EKO11_1958 Escherichia coli KO11FL diguanylate phosphodiesterase YP_005277639.1 2057693 R 595495 CDS YP_005277640.1 378712747 11776817 complement(2059422..2060786) 1 NC_016902.1 TIGRFAM: L-serine dehydratase 1; KEGG: sbo:SBO_1270 L-serine deaminase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 2060786 11776817 EKO11_1959 Escherichia coli KO11FL L-serine dehydratase 1 YP_005277640.1 2059422 R 595495 CDS YP_005277641.1 378712748 11776818 complement(2060970..2061548) 1 NC_016902.1 PFAM: NUDIX hydrolase; KEGG: sdy:SDY_1719 hypothetical protein; NUDIX hydrolase 2061548 11776818 EKO11_1960 Escherichia coli KO11FL NUDIX hydrolase YP_005277641.1 2060970 R 595495 CDS YP_005277642.1 378712749 11776819 complement(2061552..2062913) 1 NC_016902.1 KEGG: ebd:ECBD_1830 para-aminobenzoate synthase, subunit I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; para-aminobenzoate synthase subunit I 2062913 11776819 EKO11_1961 Escherichia coli KO11FL para-aminobenzoate synthase subunit I YP_005277642.1 2061552 R 595495 CDS YP_005277643.1 378712750 11776820 2062987..2063166 1 NC_016902.1 PFAM: protein of unknown function UPF0181; KEGG: sdy:SDY_1717 hypothetical protein; hypothetical protein 2063166 11776820 EKO11_1962 Escherichia coli KO11FL hypothetical protein YP_005277643.1 2062987 D 595495 CDS YP_005277644.1 378712751 11779493 complement(2063286..2063609) 1 NC_016902.1 KEGG: sbo:SBO_1276 hypothetical protein; manually curated; PFAM: Domain of unknown function DUF1889; hypothetical protein 2063609 11779493 EKO11_1963 Escherichia coli KO11FL hypothetical protein YP_005277644.1 2063286 R 595495 CDS YP_005277645.1 378712752 11779494 complement(2064008..2064352) 1 NC_016902.1 PFAM: Endoribonuclease L-PSP; KEGG: sdy:SDY_1713 hypothetical protein; endoribonuclease L-PSP 2064352 11779494 EKO11_1964 Escherichia coli KO11FL endoribonuclease L-PSP YP_005277645.1 2064008 R 595495 CDS YP_005277646.1 378712753 11776821 2064484..2066394 1 NC_016902.1 KEGG: sbo:SBO_1280 putative enzyme; PFAM: type III restriction protein res subunit; SMART: helicase c2; DEAD-like helicase; type III restriction protein res subunit 2066394 11776821 EKO11_1965 Escherichia coli KO11FL type III restriction protein res subunit YP_005277646.1 2064484 D 595495 CDS YP_005277647.1 378712754 11776822 2066452..2067147 1 NC_016902.1 PFAM: peptidase M22 glycoprotease; KEGG: ebw:BWG_1620 putative peptidase; peptidase M22 glycoprotease 2067147 11776822 EKO11_1966 Escherichia coli KO11FL peptidase M22 glycoprotease YP_005277647.1 2066452 D 595495 CDS YP_005277648.1 378712755 11776823 2067187..2067768 1 NC_016902.1 KEGG: sfv:SFV_1423 putative outer membrane protein; TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; outer membrane lipoprotein, Slp family 2067768 11776823 EKO11_1967 Escherichia coli KO11FL outer membrane lipoprotein, Slp family YP_005277648.1 2067187 D 595495 CDS YP_005277649.1 378712756 11776824 2067907..2069658 1 NC_016902.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ebd:ECBD_1837 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2069658 11776824 EKO11_1968 Escherichia coli KO11FL AMP-dependent synthetase and ligase YP_005277649.1 2067907 D 595495 CDS YP_005277650.1 378712757 11776825 2069740..2070855 1 NC_016902.1 SMART: 3'-5' exonuclease; HRDC domain protein; TIGRFAM: ribonuclease D; KEGG: eok:G2583_2251 ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; ribonuclease D 2070855 11776825 EKO11_1969 Escherichia coli KO11FL ribonuclease D YP_005277650.1 2069740 D 595495 CDS YP_005277651.1 378712758 11776826 complement(2070909..2071874) 1 NC_016902.1 PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: eoh:ECO103_1992 putative oxidoreductase; ferredoxin 2071874 11776826 EKO11_1970 Escherichia coli KO11FL ferredoxin YP_005277651.1 2070909 R 595495 CDS YP_005277652.1 378712759 11776827 complement(2071930..2073054) 1 NC_016902.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ssn:SSON_1359 hypothetical protein; Rieske (2Fe-2S) iron-sulfur domain-containing protein 2073054 11776827 EKO11_1971 Escherichia coli KO11FL Rieske (2Fe-2S) iron-sulfur domain-containing protein YP_005277652.1 2071930 R 595495 CDS YP_005277653.1 378712760 11776828 complement(2073086..2074696) 1 NC_016902.1 KEGG: eok:G2583_2248 transporter, betaine/carnitine/choline transporter (BCCT) family; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter 2074696 11776828 EKO11_1972 Escherichia coli KO11FL choline/carnitine/betaine transporter YP_005277653.1 2073086 R 595495 CDS YP_005277654.1 378712761 11776829 complement(2074947..2076032) 1 NC_016902.1 TIGRFAM: tartrate dehydrogenase; KEGG: ebw:BWG_1613 putative dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 2076032 11776829 EKO11_1973 Escherichia coli KO11FL tartrate dehydrogenase YP_005277654.1 2074947 R 595495 CDS YP_005277655.1 378712762 11776830 2076135..2077058 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbo:SBO_1289 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2077058 11776830 EKO11_1974 Escherichia coli KO11FL LysR family transcriptional regulator YP_005277655.1 2076135 D 595495 CDS YP_005277656.1 378712763 11779495 2077185..2077823 1 NC_016902.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ebd:ECBD_1844 leucine export protein LeuE; lysine exporter protein LysE/YggA 2077823 11779495 EKO11_1975 Escherichia coli KO11FL lysine exporter protein LysE/YggA YP_005277656.1 2077185 D 595495 CDS YP_005277657.1 378712764 11779496 2077996..2078355 1 NC_016902.1 PFAM: protein of unknown function DUF1971; KEGG: sdy:SDY_1697 hypothetical protein; hypothetical protein 2078355 11779496 EKO11_1976 Escherichia coli KO11FL hypothetical protein YP_005277657.1 2077996 D 595495 CDS YP_005277658.1 378712765 11776831 2078359..2078547 1 NC_016902.1 PFAM: Domain of unknown function DUF1869; KEGG: eoh:ECO103_1985 hypothetical protein; hypothetical protein 2078547 11776831 EKO11_1977 Escherichia coli KO11FL hypothetical protein YP_005277658.1 2078359 D 595495 CDS YP_005277659.1 378712766 11776832 complement(2078563..2078994) 1 NC_016902.1 PFAM: transposase IS200-family protein; KEGG: eoh:ECO103_1984 putative IS609 transposase TnpA; transposase IS200-family protein 2078994 11776832 EKO11_1978 Escherichia coli KO11FL transposase IS200-family protein YP_005277659.1 2078563 R 595495 CDS YP_005277660.1 378712767 11776833 2079002..2080210 1 NC_016902.1 manually curated; TIGRFAM: transposase, IS605 OrfB family; KEGG: eok:G2583_2932 IS605 family transposase orfB; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; transposase, IS605 OrfB family 2080210 11776833 EKO11_1979 Escherichia coli KO11FL transposase, IS605 OrfB family YP_005277660.1 2079002 D 595495 CDS YP_005277661.1 378712768 11776834 2080438..2080686 1 NC_016902.1 PFAM: Transglycosylase-associated protein; KEGG: sdy:SDY_1695 hypothetical protein; transglycosylase 2080686 11776834 EKO11_1980 Escherichia coli KO11FL transglycosylase YP_005277661.1 2080438 D 595495 CDS YP_005277662.1 378712769 11776835 complement(2080953..2082107) 1 NC_016902.1 KEGG: eok:G2583_2241 GAF domain/diguanylate cyclase (GGDEF) domain protein; PFAM: GGDEF domain containing protein; GAF domain protein; manually curated; TIGRFAM: diguanylate cyclase; SMART: GGDEF domain containing protein; GAF domain protein; GAF sensor-containing diguanylate cyclase 2082107 11776835 EKO11_1981 Escherichia coli KO11FL GAF sensor-containing diguanylate cyclase YP_005277662.1 2080953 R 595495 CDS YP_005277663.1 378712770 11776836 2082161..2082415 1 NC_016902.1 PFAM: protein of unknown function DUF333; KEGG: eoi:ECO111_2296 hypothetical protein; hypothetical protein 2082415 11776836 EKO11_1982 Escherichia coli KO11FL hypothetical protein YP_005277663.1 2082161 D 595495 CDS YP_005277664.1 378712771 11776837 complement(2082437..2082784) 1 NC_016902.1 PFAM: protein of unknown function DUF488; KEGG: ssn:SSON_1369 hypothetical protein; hypothetical protein 2082784 11776837 EKO11_1983 Escherichia coli KO11FL hypothetical protein YP_005277664.1 2082437 R 595495 CDS YP_005277665.1 378712772 11776838 complement(2082839..2084020) 1 NC_016902.1 KEGG: eoh:ECO103_1977 putative transporter; TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; cyanate transporter 2084020 11776838 EKO11_1984 Escherichia coli KO11FL cyanate transporter YP_005277665.1 2082839 R 595495 CDS YP_005277666.1 378712773 11776839 2084120..2084938 1 NC_016902.1 KEGG: sbo:SBO_1303 putative AraC-type regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2084938 11776839 EKO11_1985 Escherichia coli KO11FL AraC family transcriptional regulator YP_005277666.1 2084120 D 595495 CDS YP_005277667.1 378712774 11776840 complement(2084895..2085341) 1 NC_016902.1 PFAM: protein of unknown function DUF441; KEGG: sbo:SBO_1304 hypothetical protein; hypothetical protein 2085341 11776840 EKO11_1986 Escherichia coli KO11FL hypothetical protein YP_005277667.1 2084895 R 595495 CDS YP_005277668.1 378712775 11776841 2085463..2085615 1 NC_016902.1 manually curated; KEGG: sdy:SDY_1686 hypothetical protein; hypothetical protein 2085615 11776841 EKO11_1987 Escherichia coli KO11FL hypothetical protein YP_005277668.1 2085463 D 595495 CDS YP_005277669.1 378712776 11776842 complement(2085616..2086119) 1 NC_016902.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ssn:SSON_1374 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 2086119 11776842 EKO11_1988 Escherichia coli KO11FL YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_005277669.1 2085616 R 595495 CDS YP_005277670.1 378712777 11776843 complement(2086162..2087832) 1 NC_016902.1 SMART: GGDEF domain containing protein; manually curated; TIGRFAM: diguanylate cyclase; KEGG: eoj:ECO26_2553 putative diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 2087832 11776843 EKO11_1989 Escherichia coli KO11FL diguanylate cyclase YP_005277670.1 2086162 R 595495 CDS YP_005277671.1 378712778 11776844 complement(2087833..2089308) 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eoi:ECO111_2288 hypothetical protein; SMART: GGDEF domain containing protein; diguanylate cyclase 2089308 11776844 EKO11_1990 Escherichia coli KO11FL diguanylate cyclase YP_005277671.1 2087833 R 595495 CDS YP_005277672.1 378712779 11776845 complement(2089455..2090738) 1 NC_016902.1 PFAM: protein of unknown function DUF444; KEGG: sbo:SBO_1309 hypothetical protein; hypothetical protein 2090738 11776845 EKO11_1991 Escherichia coli KO11FL hypothetical protein YP_005277672.1 2089455 R 595495 CDS YP_005277673.1 378712780 11776846 complement(2090851..2092785) 1 NC_016902.1 KEGG: sbo:SBO_1310 hypothetical protein; PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; putative serine protein kinase PrkA 2092785 11776846 EKO11_1992 Escherichia coli KO11FL putative serine protein kinase PrkA YP_005277673.1 2090851 R 595495 CDS YP_005277674.1 378712781 11776847 2093221..2093967 1 NC_016902.1 PFAM: MltA-interacting MipA family protein; KEGG: sdy:SDY_1485 hypothetical protein; MltA-interacting MipA family protein 2093967 11776847 EKO11_1993 Escherichia coli KO11FL MltA-interacting MipA family protein YP_005277674.1 2093221 D 595495 CDS YP_005277675.1 378712782 11776848 2094057..2094911 1 NC_016902.1 PFAM: aldo/keto reductase; KEGG: eoi:ECO111_2284 putative oxidoreductase; aldo/keto reductase 2094911 11776848 EKO11_1994 Escherichia coli KO11FL aldo/keto reductase YP_005277675.1 2094057 D 595495 CDS YP_005277676.1 378712783 11776849 complement(2094962..2095846) 1 NC_016902.1 PFAM: Aldose 1-epimerase; KEGG: eoh:ECO103_1966 hypothetical protein; aldose 1-epimerase 2095846 11776849 EKO11_1995 Escherichia coli KO11FL aldose 1-epimerase YP_005277676.1 2094962 R 595495 CDS YP_005277677.1 378712784 11776850 complement(2095930..2096925) 1 NC_016902.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: sdy:SDY_1488 glyceraldehyde-3-phosphate dehydrogenase A; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type I 2096925 11776850 EKO11_1996 Escherichia coli KO11FL glyceraldehyde-3-phosphate dehydrogenase, type I YP_005277677.1 2095930 R 595495 CDS YP_005277678.1 378712785 11776851 2097267..2097680 1 NC_016902.1 TIGRFAM: methionine-R-sulfoxide reductase; KEGG: ssn:SSON_1385 methionine sulfoxide reductase B; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 2097680 11776851 EKO11_1997 Escherichia coli KO11FL methionine-R-sulfoxide reductase YP_005277678.1 2097267 D 595495 CDS YP_005277679.1 378712786 11776852 2097722..2097994 1 NC_016902.1 PFAM: protein of unknown function DUF1315; KEGG: sbc:SbBS512_E2024 hypothetical protein; hypothetical protein 2097994 11776852 EKO11_1998 Escherichia coli KO11FL hypothetical protein YP_005277679.1 2097722 D 595495 CDS YP_005277680.1 378712787 11776853 2098364..2099440 1 NC_016902.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eok:G2583_2223 oxidoreductase, zinc-binding dehydrogenase family; alcohol dehydrogenase 2099440 11776853 EKO11_1999 Escherichia coli KO11FL alcohol dehydrogenase YP_005277680.1 2098364 D 595495 CDS YP_005277681.1 378712788 11776854 2099467..2100846 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: ebw:BWG_1588 putative transporter; major facilitator superfamily protein 2100846 11776854 EKO11_2000 Escherichia coli KO11FL major facilitator superfamily protein YP_005277681.1 2099467 D 595495 CDS YP_005277682.1 378712789 11776855 2100863..2101906 1 NC_016902.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ebd:ECBD_1870 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase 2101906 11776855 EKO11_2001 Escherichia coli KO11FL alcohol dehydrogenase YP_005277682.1 2100863 D 595495 CDS YP_005277683.1 378712790 11776856 2101927..2102763 1 NC_016902.1 TIGRFAM: ketose-bisphosphate aldolase; KEGG: ebw:BWG_1586 putative aldolase; PFAM: ketose-bisphosphate aldolase class-II; ketose-bisphosphate aldolase 2102763 11776856 EKO11_2002 Escherichia coli KO11FL ketose-bisphosphate aldolase YP_005277683.1 2101927 D 595495 CDS YP_005277684.1 378712791 11779497 2102768..2103715 1 NC_016902.1 PFAM: PfkB domain protein; KEGG: ebw:BWG_1585 putative kinase; PfkB domain-containing protein 2103715 11779497 EKO11_2003 Escherichia coli KO11FL PfkB domain-containing protein YP_005277684.1 2102768 D 595495 CDS YP_005277685.1 378712792 11776857 2103725..2104705 1 NC_016902.1 PFAM: aldo/keto reductase; KEGG: ebw:BWG_1584 putative oxidoreductase; aldo/keto reductase 2104705 11776857 EKO11_2004 Escherichia coli KO11FL aldo/keto reductase YP_005277685.1 2103725 D 595495 CDS YP_005277686.1 378712793 11776858 2104842..2105600 1 NC_016902.1 KEGG: ebw:BWG_1583 putative DNA-binding transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 2105600 11776858 EKO11_2005 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005277686.1 2104842 D 595495 CDS YP_005277687.1 378712794 11776859 2105717..2107075 1 NC_016902.1 KEGG: eok:G2583_2216 inner membrane metabolite transport protein YdjE; inner membrane metabolite transport protein YdjE 2107075 11776859 EKO11_2006 Escherichia coli KO11FL inner membrane metabolite transport protein YdjE YP_005277687.1 2105717 D 595495 CDS YP_005277688.1 378712795 11776860 complement(2107168..2107809) 1 NC_016902.1 KEGG: sbc:SbBS512_E2023 nicotinamidase/pyrazinamidase; PFAM: isochorismatase hydrolase; nicotinamidase 2107809 11776860 EKO11_2007 Escherichia coli KO11FL nicotinamidase YP_005277688.1 2107168 R 595495 CDS YP_005277689.1 378712796 11776861 complement(2107820..2108836) 1 NC_016902.1 KEGG: ssn:SSON_1388 cytoplasmic asparaginase I; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; type I L-asparaginase 2108836 11776861 EKO11_2008 Escherichia coli KO11FL type I L-asparaginase YP_005277689.1 2107820 R 595495 CDS YP_005277690.1 378712797 11776862 complement(2109003..2111003) 1 NC_016902.1 manually curated; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; KEGG: sbc:SbBS512_E2021 protease 4; PFAM: peptidase S49; signal peptide peptidase SppA, 67K type 2111003 11776862 EKO11_2009 Escherichia coli KO11FL signal peptide peptidase SppA, 67K type YP_005277690.1 2109003 R 595495 CDS YP_005277691.1 378712798 11776863 2111020..2111571 1 NC_016902.1 PFAM: nitroreductase; KEGG: sbo:SBO_1322 hypothetical protein; nitroreductase 2111571 11776863 EKO11_2010 Escherichia coli KO11FL nitroreductase YP_005277691.1 2111020 D 595495 CDS YP_005277692.1 378712799 11776864 2111688..2112731 1 NC_016902.1 KEGG: sdy:SDY_1509 selenophosphate synthetase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; selenide, water dikinase 2112731 11776864 EKO11_2011 Escherichia coli KO11FL selenide, water dikinase YP_005277692.1 2111688 D 595495 CDS YP_005277693.1 378712800 11776865 2112736..2114697 1 NC_016902.1 TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; KEGG: eoh:ECO103_1957 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; DNA topoisomerase III 2114697 11776865 EKO11_2012 Escherichia coli KO11FL DNA topoisomerase III YP_005277693.1 2112736 D 595495 CDS YP_005277694.1 378712801 11776866 2114825..2115865 1 NC_016902.1 KEGG: eoi:ECO111_2273 hypothetical protein; hypothetical protein 2115865 11776866 EKO11_2013 Escherichia coli KO11FL hypothetical protein YP_005277694.1 2114825 D 595495 CDS YP_005277695.1 378712802 11776867 complement(2115982..2117325) 1 NC_016902.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: eoh:ECO103_1954 glutamate dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 2117325 11776867 EKO11_2014 Escherichia coli KO11FL Glu/Leu/Phe/Val dehydrogenase YP_005277695.1 2115982 R 595495 CDS YP_005277696.1 378712803 11776868 2117561..2117833 1 NC_016902.1 PFAM: protein of unknown function DUF1496; KEGG: sbc:SbBS512_E2012 hypothetical protein; hypothetical protein 2117833 11776868 EKO11_2015 Escherichia coli KO11FL hypothetical protein YP_005277696.1 2117561 D 595495 CDS YP_005277697.1 378712804 11776869 complement(2117799..2118206) 1 NC_016902.1 PFAM: NUDIX hydrolase; KEGG: eoh:ECO103_1952 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; NUDIX hydrolase 2118206 11776869 EKO11_2016 Escherichia coli KO11FL NUDIX hydrolase YP_005277697.1 2117799 R 595495 CDS YP_005277698.1 378712805 11776870 2118293..2118913 1 NC_016902.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ebd:ECBD_1886 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 2118913 11776870 EKO11_2017 Escherichia coli KO11FL CDP-alcohol phosphatidyltransferase YP_005277698.1 2118293 D 595495 CDS YP_005277699.1 378712806 11779498 complement(2118922..2120229) 1 NC_016902.1 KEGG: eoh:ECO103_1950 putative thiosulfate sulfur transferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 2120229 11779498 EKO11_2018 Escherichia coli KO11FL Rhodanese domain-containing protein YP_005277699.1 2118922 R 595495 CDS YP_005277700.1 378712807 11776871 complement(2120296..2120949) 1 NC_016902.1 KEGG: eoh:ECO103_1949 putative transporter subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2120949 11776871 EKO11_2019 Escherichia coli KO11FL ABC transporter YP_005277700.1 2120296 R 595495 CDS YP_005277701.1 378712808 11776872 complement(2120949..2122484) 1 NC_016902.1 KEGG: eoh:ECO103_1948 fused transporter subunits of ABC superfamily: membrane components; ABC transporter, fused integral membrane subunits 2122484 11776872 EKO11_2020 Escherichia coli KO11FL ABC transporter, fused integral membrane subunits YP_005277701.1 2120949 R 595495 CDS YP_005277702.1 378712809 11776873 complement(2122457..2123623) 1 NC_016902.1 PFAM: extracellular solute-binding protein family 1; KEGG: eoh:ECO103_1947 putative ABC transporter solute-binding protein; extracellular solute-binding protein 2123623 11776873 EKO11_2021 Escherichia coli KO11FL extracellular solute-binding protein YP_005277702.1 2122457 R 595495 CDS YP_005277703.1 378712810 11776874 complement(2123633..2124181) 1 NC_016902.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: eoh:ECO103_1946 hypothetical protein; Carboxymuconolactone decarboxylase 2124181 11776874 EKO11_2022 Escherichia coli KO11FL Carboxymuconolactone decarboxylase YP_005277703.1 2123633 R 595495 CDS YP_005277704.1 378712811 11779499 complement(2124181..2124888) 1 NC_016902.1 PFAM: SNARE associated Golgi protein; KEGG: eoh:ECO103_1945 hypothetical protein; hypothetical protein 2124888 11779499 EKO11_2023 Escherichia coli KO11FL hypothetical protein YP_005277704.1 2124181 R 595495 CDS YP_005277705.1 378712812 11776875 complement(2124903..2125580) 1 NC_016902.1 KEGG: ssn:SSON_1406 hypothetical protein; hypothetical protein 2125580 11776875 EKO11_2024 Escherichia coli KO11FL hypothetical protein YP_005277705.1 2124903 R 595495 CDS YP_005277706.1 378712813 11776876 complement(2125585..2126295) 1 NC_016902.1 PFAM: SNARE associated Golgi protein; KEGG: ebd:ECBD_1894 SNARE associated Golgi protein; hypothetical protein 2126295 11776876 EKO11_2025 Escherichia coli KO11FL hypothetical protein YP_005277706.1 2125585 R 595495 CDS YP_005277707.1 378712814 11776877 complement(2126462..2127268) 1 NC_016902.1 KEGG: sbc:SbBS512_E1997 exonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 2127268 11776877 EKO11_2026 Escherichia coli KO11FL exodeoxyribonuclease III YP_005277707.1 2126462 R 595495 CDS YP_005277708.1 378712815 11776878 2127714..2128934 1 NC_016902.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; succinylornithine transaminase family; KEGG: eoh:ECO103_1941 bifunctional succinylornithine transaminase/acetylornithine transaminase; PFAM: aminotransferase class-III; acetylornithine and succinylornithine aminotransferase 2128934 11776878 EKO11_2027 Escherichia coli KO11FL acetylornithine and succinylornithine aminotransferase YP_005277708.1 2127714 D 595495 CDS YP_005277709.1 378712816 11776879 2128931..2129965 1 NC_016902.1 TIGRFAM: arginine N-succinyltransferase; arginine/ornithine succinyltransferase subunit; KEGG: eoh:ECO103_1940 arginine succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase 2129965 11776879 EKO11_2028 Escherichia coli KO11FL arginine N-succinyltransferase YP_005277709.1 2128931 D 595495 CDS YP_005277710.1 378712817 11776880 2129962..2131440 1 NC_016902.1 KEGG: eoi:ECO111_2257 succinylglutamic semialdehyde dehydrogenase; TIGRFAM: succinylglutamic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; succinylglutamic semialdehyde dehydrogenase 2131440 11776880 EKO11_2029 Escherichia coli KO11FL succinylglutamic semialdehyde dehydrogenase YP_005277710.1 2129962 D 595495 CDS YP_005277711.1 378712818 11779500 2131437..2132780 1 NC_016902.1 TIGRFAM: succinylarginine dihydrolase; KEGG: eoj:ECO26_2520 succinylarginine dihydrolase; PFAM: Succinylarginine dihydrolase; succinylarginine dihydrolase 2132780 11779500 EKO11_2030 Escherichia coli KO11FL succinylarginine dihydrolase YP_005277711.1 2131437 D 595495 CDS YP_005277712.1 378712819 11776881 2132773..2133741 1 NC_016902.1 TIGRFAM: succinylglutamate desuccinylase; KEGG: sbc:SbBS512_E1990 succinylglutamate desuccinylase; PFAM: Succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase 2133741 11776881 EKO11_2031 Escherichia coli KO11FL succinylglutamate desuccinylase YP_005277712.1 2132773 D 595495 CDS YP_005277713.1 378712820 11776882 2134071..2134556 1 NC_016902.1 PFAM: protein of unknown function Spy-related; KEGG: eok:G2583_2189 Spy; hypothetical protein 2134556 11776882 EKO11_2032 Escherichia coli KO11FL hypothetical protein YP_005277713.1 2134071 D 595495 CDS YP_005277714.1 378712821 11776883 2134759..2135334 1 NC_016902.1 PFAM: protein of unknown function DUF886; KEGG: sfv:SFV_1478 hypothetical protein; hypothetical protein 2135334 11776883 EKO11_2033 Escherichia coli KO11FL hypothetical protein YP_005277714.1 2134759 D 595495 CDS YP_005277715.1 378712822 11776884 complement(2135294..2136181) 1 NC_016902.1 KEGG: eoi:ECO111_2252 nucleotide excision repair endonuclease; PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain-containing protein 2136181 11776884 EKO11_2034 Escherichia coli KO11FL Excinuclease ABC C subunit domain-containing protein YP_005277715.1 2135294 R 595495 CDS YP_005277716.1 378712823 11779501 complement(2136411..2137238) 1 NC_016902.1 TIGRFAM: NAD+ synthetase; KEGG: ssn:SSON_1418 NAD synthetase; NAD+ synthetase 2137238 11779501 EKO11_2035 Escherichia coli KO11FL NAD+ synthetase YP_005277716.1 2136411 R 595495 CDS YP_005277717.1 378712824 11779502 2137440..2137778 1 NC_016902.1 PFAM: SmpA/OmlA domain-containing protein; KEGG: sdy:SDY_1541 DNA-binding transcriptional activator OsmE; SmpA/OmlA domain-containing protein 2137778 11779502 EKO11_2036 Escherichia coli KO11FL SmpA/OmlA domain-containing protein YP_005277717.1 2137440 D 595495 CDS YP_005277718.1 378712825 11776885 2138077..2138397 1 NC_016902.1 TIGRFAM: PTS system, lactose/cellobiose family IIB subunit; KEGG: sbo:SBO_1352 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; PTS system lactose/cellobiose family transporter subunit IIB 2138397 11776885 EKO11_2037 Escherichia coli KO11FL PTS system lactose/cellobiose family transporter subunit IIB YP_005277718.1 2138077 D 595495 CDS YP_005277719.1 378712826 11776886 2138482..2139840 1 NC_016902.1 TIGRFAM: PTS system, cellobiose-specific IIC subunit; PTS system, lactose/cellobiose family IIC subunit; KEGG: ebd:ECBD_1908 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; PFAM: phosphotransferase system EIIC; PTS system cellobiose-specific transporter subunit IIC 2139840 11776886 EKO11_2038 Escherichia coli KO11FL PTS system cellobiose-specific transporter subunit IIC YP_005277719.1 2138482 D 595495 CDS YP_005277720.1 378712827 11776887 2139891..2140241 1 NC_016902.1 KEGG: ssn:SSON_1422 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; TIGRFAM: PTS system, lactose-specific IIa component; PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; PTS system, lactose-specific IIa component 2140241 11776887 EKO11_2039 Escherichia coli KO11FL PTS system, lactose-specific IIa component YP_005277720.1 2139891 D 595495 CDS YP_005277721.1 378712828 11776888 2140252..2141091 1 NC_016902.1 KEGG: ssn:SSON_1423 DNA-binding transcriptional regulator ChbR; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2141091 11776888 EKO11_2040 Escherichia coli KO11FL AraC family transcriptional regulator YP_005277721.1 2140252 D 595495 CDS YP_005277722.1 378712829 11776889 2141195..2142547 1 NC_016902.1 PFAM: glycoside hydrolase family 4; KEGG: eoh:ECO103_1927 cryptic phospho-beta-glucosidase, NAD(P)-binding; glycoside hydrolase family protein 2142547 11776889 EKO11_2041 Escherichia coli KO11FL glycoside hydrolase family protein YP_005277722.1 2141195 D 595495 CDS YP_005277723.1 378712830 11776890 2142560..2143318 1 NC_016902.1 PFAM: YdjC family protein; KEGG: eoh:ECO103_1926 hypothetical protein; hypothetical protein 2143318 11776890 EKO11_2042 Escherichia coli KO11FL hypothetical protein YP_005277723.1 2142560 D 595495 CDS YP_005277724.1 378712831 11779503 complement(2143365..2145626) 1 NC_016902.1 KEGG: eoi:ECO111_2243 hydroperoxidase II; PFAM: Catalase related subgroup; Catalase domain protein; catalase 2145626 11779503 EKO11_2043 Escherichia coli KO11FL catalase YP_005277724.1 2143365 R 595495 CDS YP_005277725.1 378712832 11779504 2145830..2146072 1 NC_016902.1 PFAM: Cell division activator CedA; KEGG: ssn:SSON_1427 cell division modulator; Cell division activator CedA 2146072 11779504 EKO11_2044 Escherichia coli KO11FL Cell division activator CedA YP_005277725.1 2145830 D 595495 CDS YP_005277726.1 378712833 11776891 2146361..2146717 1 NC_016902.1 KEGG: sfl:SF1498 hypothetical protein; hypothetical protein 2146717 11776891 EKO11_2045 Escherichia coli KO11FL hypothetical protein YP_005277726.1 2146361 D 595495 CDS YP_005277727.1 378712834 11776892 2146727..2147164 1 NC_016902.1 KEGG: ebw:BWG_1543 hypothetical protein; hypothetical protein 2147164 11776892 EKO11_2046 Escherichia coli KO11FL hypothetical protein YP_005277727.1 2146727 D 595495 CDS YP_005277728.1 378712835 11776893 complement(2147168..2148559) 1 NC_016902.1 PFAM: sodium:dicarboxylate symporter; KEGG: eoi:ECO111_2239 putative transporter; sodium:dicarboxylate symporter 2148559 11776893 EKO11_2047 Escherichia coli KO11FL sodium:dicarboxylate symporter YP_005277728.1 2147168 R 595495 CDS YP_005277729.1 378712836 11776894 complement(2148692..2149282) 1 NC_016902.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: ssn:SSON_1429 hypothetical protein; membrane-bound metal-dependent hydrolase 2149282 11776894 EKO11_2048 Escherichia coli KO11FL membrane-bound metal-dependent hydrolase YP_005277729.1 2148692 R 595495 CDS YP_005277730.1 378712837 11776895 complement(2149445..2150113) 1 NC_016902.1 KEGG: sbc:SbBS512_E1972 2-deoxyglucose-6-phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 2150113 11776895 EKO11_2049 Escherichia coli KO11FL HAD-superfamily hydrolase YP_005277730.1 2149445 R 595495 CDS YP_005277731.1 378712838 11776896 2150260..2150796 1 NC_016902.1 KEGG: sdy:SDY_1819 hypothetical protein; hypothetical protein 2150796 11776896 EKO11_2050 Escherichia coli KO11FL hypothetical protein YP_005277731.1 2150260 D 595495 CDS YP_005277732.1 378712839 11776897 complement(2150837..2151697) 1 NC_016902.1 PFAM: Fructosamine/Ketosamine-3-kinase; KEGG: sdy:SDY_1818 hypothetical protein; fructosamine/Ketosamine-3-kinase 2151697 11776897 EKO11_2051 Escherichia coli KO11FL fructosamine/Ketosamine-3-kinase YP_005277732.1 2150837 R 595495 CDS YP_005277733.1 378712840 11776898 complement(2151803..2152093) 1 NC_016902.1 KEGG: sdy:SDY_1817 hypothetical protein; hypothetical protein 2152093 11776898 EKO11_2052 Escherichia coli KO11FL hypothetical protein YP_005277733.1 2151803 R 595495 CDS YP_005277734.1 378712841 11776899 complement(2152194..2153123) 1 NC_016902.1 KEGG: sfv:SFV_1498 6-phosphofructokinase 2; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 2153123 11776899 EKO11_2053 Escherichia coli KO11FL 1-phosphofructokinase YP_005277734.1 2152194 R 595495 CDS YP_005277735.1 378712842 11776900 2153410..2154168 1 NC_016902.1 PFAM: protein of unknown function DUF481; KEGG: sbc:SbBS512_E1967 hypothetical protein; hypothetical protein 2154168 11776900 EKO11_2054 Escherichia coli KO11FL hypothetical protein YP_005277735.1 2153410 D 595495 CDS YP_005277736.1 378712843 11776901 complement(2154221..2154439) 1 NC_016902.1 manually curated; KEGG: sfv:SFV_1500 hypothetical protein; hypothetical protein 2154439 11776901 EKO11_2055 Escherichia coli KO11FL hypothetical protein YP_005277736.1 2154221 R 595495 CDS YP_005277737.1 378712844 11776902 2156926..2158854 1 NC_016902.1 KEGG: ssn:SSON_1439 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein; threonyl-tRNA synthetase 2158854 11776902 EKO11_2057 Escherichia coli KO11FL threonyl-tRNA synthetase YP_005277737.1 2156926 D 595495 CDS YP_005277738.1 378712845 11776903 2158858..2159400 1 NC_016902.1 manually curated; TIGRFAM: translation initiation factor IF-3; KEGG: ebd:ECBD_1927 translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; translation initiation factor IF-3 2159400 11776903 EKO11_2058 Escherichia coli KO11FL translation initiation factor IF-3 YP_005277738.1 2158858 D 595495 CDS YP_005277739.1 378712846 11776904 2159497..2159694 1 NC_016902.1 KEGG: cro:ROD_13391 50S ribosomal subunit protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; 50S ribosomal protein L35 2159694 11776904 EKO11_2059 Escherichia coli KO11FL 50S ribosomal protein L35 YP_005277739.1 2159497 D 595495 CDS YP_005277740.1 378712847 11776905 2159747..2160103 1 NC_016902.1 KEGG: cro:ROD_13401 50S ribosomal subunit protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; 50S ribosomal protein L20 2160103 11776905 EKO11_2060 Escherichia coli KO11FL 50S ribosomal protein L20 YP_005277740.1 2159747 D 595495 CDS YP_005277741.1 378712848 11776906 2160553..2161536 1 NC_016902.1 KEGG: sfv:SFV_1509 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; phenylalanyl-tRNA synthetase subunit alpha 2161536 11776906 EKO11_2061 Escherichia coli KO11FL phenylalanyl-tRNA synthetase subunit alpha YP_005277741.1 2160553 D 595495 CDS YP_005277742.1 378712849 11776907 2161551..2163938 1 NC_016902.1 TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: ssn:SSON_1445 phenylalanyl-tRNA synthetase subunit beta; phenylalanyl-tRNA synthetase subunit beta 2163938 11776907 EKO11_2062 Escherichia coli KO11FL phenylalanyl-tRNA synthetase subunit beta YP_005277742.1 2161551 D 595495 CDS YP_005277743.1 378712850 11776908 2163943..2164242 1 NC_016902.1 TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: cro:ROD_13431 integration host factor alpha subunit; SMART: histone family protein DNA-binding protein; integration host factor subunit alpha 2164242 11776908 EKO11_2063 Escherichia coli KO11FL integration host factor subunit alpha YP_005277743.1 2163943 D 595495 CDS YP_005277744.1 378712851 11776909 2164343..2165323 1 NC_016902.1 PFAM: transport system permease protein; KEGG: eoh:ECO103_1855 vtamin B12-transporter permease; transport system permease 2165323 11776909 EKO11_2064 Escherichia coli KO11FL transport system permease YP_005277744.1 2164343 D 595495 CDS YP_005277745.1 378712852 11776910 2165386..2165937 1 NC_016902.1 KEGG: sdy:SDY_1805 putative glutathione peroxidase; PFAM: glutathione peroxidase; peroxiredoxin 2165937 11776910 EKO11_2065 Escherichia coli KO11FL peroxiredoxin YP_005277745.1 2165386 D 595495 CDS YP_005277746.1 378712853 11776911 2165937..2166686 1 NC_016902.1 KEGG: sdy:SDY_1804 vitamin B12-transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2166686 11776911 EKO11_2066 Escherichia coli KO11FL ABC transporter YP_005277746.1 2165937 D 595495 CDS YP_005277747.1 378712854 11776912 2166764..2167228 1 NC_016902.1 PFAM: NLP/P60 protein; KEGG: ssn:SSON_1450 lipoprotein; NLP/P60 protein 2167228 11776912 EKO11_2067 Escherichia coli KO11FL NLP/P60 protein YP_005277747.1 2166764 D 595495 CDS YP_005277748.1 378712855 11776913 2167475..2168188 1 NC_016902.1 PFAM: EAL domain protein; KEGG: eoh:ECO103_1851 hypothetical protein; diguanylate phosphodiesterase 2168188 11776913 EKO11_2068 Escherichia coli KO11FL diguanylate phosphodiesterase YP_005277748.1 2167475 D 595495 CDS YP_005277749.1 378712856 11776914 2168251..2169687 1 NC_016902.1 PFAM: protein of unknown function UPF0061; KEGG: eoh:ECO103_1850 hypothetical protein; hypothetical protein 2169687 11776914 EKO11_2069 Escherichia coli KO11FL hypothetical protein YP_005277749.1 2168251 D 595495 CDS YP_005277750.1 378712857 11779506 complement(2169691..2169882) 1 NC_016902.1 PFAM: Hemin uptake protein hemP; KEGG: sdy:SDY_1799 hypothetical protein; hemin uptake protein HemP 2169882 11779506 EKO11_2070 Escherichia coli KO11FL hemin uptake protein HemP YP_005277750.1 2169691 R 595495 CDS YP_005277751.1 378712858 11776915 complement(2170014..2171060) 1 NC_016902.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sbo:SBO_1424 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 2171060 11776915 EKO11_2071 Escherichia coli KO11FL phospho-2-dehydro-3-deoxyheptonate aldolase YP_005277751.1 2170014 R 595495 CDS YP_005277752.1 378712859 11776916 complement(2171217..2172050) 1 NC_016902.1 PFAM: protein of unknown function DUF299; KEGG: sdy:SDY_1797 hypothetical protein; hypothetical protein 2172050 11776916 EKO11_2072 Escherichia coli KO11FL hypothetical protein YP_005277752.1 2171217 R 595495 CDS YP_005277753.1 378712860 11776917 2172383..2174761 1 NC_016902.1 TIGRFAM: phosphoenolpyruvate synthase; KEGG: eoi:ECO111_2172 phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; phosphoenolpyruvate synthase 2174761 11776917 EKO11_2073 Escherichia coli KO11FL phosphoenolpyruvate synthase YP_005277753.1 2172383 D 595495 CDS YP_005277754.1 378712861 11776918 complement(2174818..2176461) 1 NC_016902.1 PFAM: AMP-dependent synthetase and ligase; KEGG: eok:G2583_2098 putative ligase/synthetase; AMP-dependent synthetase and ligase 2176461 11776918 EKO11_2074 Escherichia coli KO11FL AMP-dependent synthetase and ligase YP_005277754.1 2174818 R 595495 CDS YP_005277755.1 378712862 11776919 complement(2176518..2176811) 1 NC_016902.1 KEGG: sbc:SbBS512_E1903 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2176811 11776919 EKO11_2075 Escherichia coli KO11FL iron-sulfur cluster-binding protein YP_005277755.1 2176518 R 595495 CDS YP_005277756.1 378712863 11776920 complement(2176808..2178097) 1 NC_016902.1 KEGG: eoh:ECO103_1843 hypothetical protein; PFAM: FAD dependent oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2178097 11776920 EKO11_2076 Escherichia coli KO11FL electron-transferring-flavoprotein dehydrogenase YP_005277756.1 2176808 R 595495 CDS YP_005277757.1 378712864 11776921 complement(2178153..2179091) 1 NC_016902.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: ebw:BWG_1512 electron transfer flavoprotein subunit YdiR; electron transfer flavoprotein subunit alpha 2179091 11776921 EKO11_2077 Escherichia coli KO11FL electron transfer flavoprotein subunit alpha YP_005277757.1 2178153 R 595495 CDS YP_005277758.1 378712865 11776922 complement(2179111..2179974) 1 NC_016902.1 KEGG: eoj:ECO26_2426 putative electron transfer flavoprotein YdiQ; manually curated; PFAM: Electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunit alpha/beta 2179974 11776922 EKO11_2078 Escherichia coli KO11FL electron transfer flavoprotein subunit alpha/beta YP_005277758.1 2179111 R 595495 CDS YP_005277759.1 378712866 11776923 2180191..2181102 1 NC_016902.1 KEGG: sbc:SbBS512_E1899 transcriptional regulator, AraC family; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2181102 11776923 EKO11_2079 Escherichia coli KO11FL AraC family transcriptional regulator YP_005277759.1 2180191 D 595495 CDS YP_005277760.1 378712867 11776924 complement(2181145..2182296) 1 NC_016902.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: eok:G2583_2092 acyl-coA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2182296 11776924 EKO11_2080 Escherichia coli KO11FL acyl-CoA dehydrogenase domain-containing protein YP_005277760.1 2181145 R 595495 CDS YP_005277761.1 378712868 11776925 complement(2182310..2183905) 1 NC_016902.1 PFAM: coenzyme A transferase; KEGG: eoh:ECO103_1837 fused putative acetyl-CoA: acetoacetyl-CoA transferase: alpha subunit/beta subunit; coenzyme A transferase 2183905 11776925 EKO11_2081 Escherichia coli KO11FL coenzyme A transferase YP_005277761.1 2182310 R 595495 CDS YP_005277762.1 378712869 11776926 complement(2184049..2184807) 1 NC_016902.1 TIGRFAM: 3-dehydroquinate dehydratase, type I; KEGG: eoh:ECO103_1836 3-dehydroquinate dehydratase; PFAM: dehydroquinase class I; 3-dehydroquinate dehydratase 2184807 11776926 EKO11_2082 Escherichia coli KO11FL 3-dehydroquinate dehydratase YP_005277762.1 2184049 R 595495 CDS YP_005277763.1 378712870 11779507 complement(2184839..2185705) 1 NC_016902.1 PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: eoh:ECO103_1835 quinate/shikimate dehydrogenase; shikimate dehydrogenase 2185705 11779507 EKO11_2083 Escherichia coli KO11FL shikimate dehydrogenase YP_005277763.1 2184839 R 595495 CDS YP_005277764.1 378712871 11776927 complement(2185717..2186982) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eok:G2583_2088 transporter, major facilitator family; major facilitator superfamily protein 2186982 11776927 EKO11_2084 Escherichia coli KO11FL major facilitator superfamily protein YP_005277764.1 2185717 R 595495 CDS YP_005277765.1 378712872 11776928 complement(2187209..2188423) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoj:ECO26_2418 putative transporter; major facilitator superfamily protein 2188423 11776928 EKO11_2085 Escherichia coli KO11FL major facilitator superfamily protein YP_005277765.1 2187209 R 595495 CDS YP_005277766.1 378712873 11779508 complement(2188523..2188879) 1 NC_016902.1 PFAM: Domain of unknown function DUF1870; KEGG: ebw:BWG_1503 hypothetical protein; hypothetical protein 2188879 11779508 EKO11_2086 Escherichia coli KO11FL hypothetical protein YP_005277766.1 2188523 R 595495 CDS YP_005277767.1 378712874 11776929 complement(2189308..2190420) 1 NC_016902.1 PFAM: protein of unknown function UPF0118; KEGG: sdy:SDY_1676 putative inner membrane protein; hypothetical protein 2190420 11776929 EKO11_2087 Escherichia coli KO11FL hypothetical protein YP_005277767.1 2189308 R 595495 CDS YP_005277768.1 378712875 11776930 2190809..2193865 1 NC_016902.1 PFAM: FAD linked oxidase domain protein; KEGG: eoh:ECO103_1830 putative FAD-linked oxidoreductase; FAD linked oxidase domain-containing protein 2193865 11776930 EKO11_2088 Escherichia coli KO11FL FAD linked oxidase domain-containing protein YP_005277768.1 2190809 D 595495 CDS YP_005277769.1 378712876 11776931 2193862..2194272 1 NC_016902.1 PFAM: thioesterase superfamily protein; KEGG: ebd:ECBD_1960 hypothetical protein; thioesterase superfamily protein 2194272 11776931 EKO11_2089 Escherichia coli KO11FL thioesterase superfamily protein YP_005277769.1 2193862 D 595495 CDS YP_005277770.1 378712877 11776932 2194291..2194560 1 NC_016902.1 manually curated; KEGG: sfv:SFV_1708 hypothetical protein; hypothetical protein 2194560 11776932 EKO11_2090 Escherichia coli KO11FL hypothetical protein YP_005277770.1 2194291 D 595495 CDS YP_005277771.1 378712878 11776933 2195108..2195476 1 NC_016902.1 KEGG: sbo:SBO_1446 iron-sulfur cluster assembly scaffold protein; TIGRFAM: FeS assembly scaffold SufA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; FeS assembly scaffold SufA 2195476 11776933 EKO11_2091 Escherichia coli KO11FL FeS assembly scaffold SufA YP_005277771.1 2195108 D 595495 CDS YP_005277772.1 378712879 11776934 2195485..2196972 1 NC_016902.1 KEGG: eoi:ECO111_2152 cysteine desulfurase activator complex subunit SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; FeS assembly protein SufB 2196972 11776934 EKO11_2092 Escherichia coli KO11FL FeS assembly protein SufB YP_005277772.1 2195485 D 595495 CDS YP_005277773.1 378712880 11776935 2196982..2197728 1 NC_016902.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: ssn:SSON_1474 cysteine desulfurase ATPase component; SMART: AAA ATPase; FeS assembly ATPase SufC 2197728 11776935 EKO11_2093 Escherichia coli KO11FL FeS assembly ATPase SufC YP_005277773.1 2196982 D 595495 CDS YP_005277774.1 378712881 11776936 2197703..2198974 1 NC_016902.1 KEGG: eoi:ECO111_2150 cysteine desulfurase activator complex subunit SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; FeS assembly protein SufD 2198974 11776936 EKO11_2094 Escherichia coli KO11FL FeS assembly protein SufD YP_005277774.1 2197703 D 595495 CDS YP_005277775.1 378712882 11776937 2198971..2200191 1 NC_016902.1 KEGG: eoi:ECO111_2149 bifunctional cysteine desulfurase/selenocysteine lyase; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SufS subfamily cysteine desulfurase 2200191 11776937 EKO11_2095 Escherichia coli KO11FL SufS subfamily cysteine desulfurase YP_005277775.1 2198971 D 595495 CDS YP_005277776.1 378712883 11776938 2200204..2200620 1 NC_016902.1 PFAM: Fe-S metabolism associated SufE; KEGG: ebd:ECBD_1966 cysteine desufuration protein SufE; Fe-S metabolism associated SufE 2200620 11776938 EKO11_2096 Escherichia coli KO11FL Fe-S metabolism associated SufE YP_005277776.1 2200204 D 595495 CDS YP_005277777.1 378712884 11776939 2200769..2201773 1 NC_016902.1 KEGG: sfv:SFV_1701 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein 2201773 11776939 EKO11_2097 Escherichia coli KO11FL ErfK/YbiS/YcfS/YnhG family protein YP_005277777.1 2200769 D 595495 CDS YP_005277778.1 378712885 11776940 complement(2201837..2202073) 1 NC_016902.1 PFAM: LPP repeat-containing protein; KEGG: sdy:SDY_1908 murein lipoprotein; LPP repeat-containing protein 2202073 11776940 EKO11_2098 Escherichia coli KO11FL LPP repeat-containing protein YP_005277778.1 2201837 R 595495 CDS YP_005277779.1 378712886 11779509 complement(2202384..2203796) 1 NC_016902.1 TIGRFAM: pyruvate kinase; KEGG: sbc:SbBS512_E1877 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 2203796 11779509 EKO11_2099 Escherichia coli KO11FL pyruvate kinase YP_005277779.1 2202384 R 595495 CDS YP_005277780.1 378712887 11779510 2204353..2204562 1 NC_016902.1 KEGG: sdy:SDY_1904 hypothetical protein; hypothetical protein 2204562 11779510 EKO11_2100 Escherichia coli KO11FL hypothetical protein YP_005277780.1 2204353 D 595495 CDS YP_005277781.1 378712888 11776941 2205018..2205644 1 NC_016902.1 KEGG: sbo:SBO_1458 hypothetical protein; hypothetical protein 2205644 11776941 EKO11_2101 Escherichia coli KO11FL hypothetical protein YP_005277781.1 2205018 D 595495 CDS YP_005277782.1 378712889 11776942 2205665..2207767 1 NC_016902.1 PFAM: Aldehyde ferredoxin oxidoreductase ; aldehyde ferredoxin oxidoreductase; KEGG: ebd:ECBD_1972 putative oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 2207767 11776942 EKO11_2102 Escherichia coli KO11FL Aldehyde ferredoxin oxidoreductase YP_005277782.1 2205665 D 595495 CDS YP_005277783.1 378712890 11776943 2207780..2208418 1 NC_016902.1 KEGG: eoh:ECO103_1812 hypothetical protein; hypothetical protein 2208418 11776943 EKO11_2103 Escherichia coli KO11FL hypothetical protein YP_005277783.1 2207780 D 595495 CDS YP_005277784.1 378712891 11776944 2208482..2209150 1 NC_016902.1 KEGG: sdy:SDY_1899 putative oxidoreductase, Fe-S subunit; putative oxidoreductase, Fe-S subunit 2209150 11776944 EKO11_2104 Escherichia coli KO11FL putative oxidoreductase, Fe-S subunit YP_005277784.1 2208482 D 595495 CDS YP_005277785.1 378712892 11776945 2209147..2209932 1 NC_016902.1 KEGG: eoi:ECO111_2139 putative cytochrome; putative cytochrome 2209932 11776945 EKO11_2105 Escherichia coli KO11FL putative cytochrome YP_005277785.1 2209147 D 595495 CDS YP_005277786.1 378712893 11776946 2209984..2210748 1 NC_016902.1 KEGG: eoh:ECO103_1809 hypothetical protein; hypothetical protein 2210748 11776946 EKO11_2106 Escherichia coli KO11FL hypothetical protein YP_005277786.1 2209984 D 595495 CDS YP_005277787.1 378712894 11776947 complement(2210760..2212364) 1 NC_016902.1 KEGG: eoh:ECO103_1808 hypothetical protein; hypothetical protein 2212364 11776947 EKO11_2107 Escherichia coli KO11FL hypothetical protein YP_005277787.1 2210760 R 595495 CDS YP_005277788.1 378712895 11776948 complement(2212490..2212795) 1 NC_016902.1 PFAM: Putative mono-oxygenase ydhR; KEGG: sbc:SbBS512_E1865 hypothetical protein; Putative mono-oxygenase ydhR 2212795 11776948 EKO11_2108 Escherichia coli KO11FL Putative mono-oxygenase ydhR YP_005277788.1 2212490 R 595495 CDS YP_005277789.1 378712896 11779511 2213368..2214624 1 NC_016902.1 KEGG: sbc:SbBS512_E1862 hypothetical protein; hypothetical protein 2214624 11779511 EKO11_2109 Escherichia coli KO11FL hypothetical protein YP_005277789.1 2213368 D 595495 CDS YP_005277790.1 378712897 11779512 complement(2214665..2216038) 1 NC_016902.1 KEGG: sbc:SbBS512_E1861 multidrug efflux protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 2216038 11779512 EKO11_2110 Escherichia coli KO11FL MATE efflux family protein YP_005277790.1 2214665 R 595495 CDS YP_005277791.1 378712898 11776951 2216253..2216894 1 NC_016902.1 TIGRFAM: riboflavin synthase, alpha subunit; KEGG: sdy:SDY_1888 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha 2216894 11776951 EKO11_2111 Escherichia coli KO11FL riboflavin synthase subunit alpha YP_005277791.1 2216253 D 595495 CDS YP_005277792.1 378712899 11779513 complement(2216934..2218082) 1 NC_016902.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: ssn:SSON_1495 cyclopropane fatty acyl phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2218082 11779513 EKO11_2112 Escherichia coli KO11FL cyclopropane-fatty-acyl-phospholipid synthase YP_005277792.1 2216934 R 595495 CDS YP_005277793.1 378712900 11776952 complement(2218373..2219584) 1 NC_016902.1 KEGG: ebd:ECBD_1983 inner membrane transport protein YdhC; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter 2219584 11776952 EKO11_2113 Escherichia coli KO11FL Bcr/CflA subfamily drug resistance transporter YP_005277793.1 2218373 R 595495 CDS YP_005277794.1 378712901 11776953 2219697..2220629 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sdy:SDY_1885 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 2220629 11776953 EKO11_2114 Escherichia coli KO11FL LysR family transcriptional regulator YP_005277794.1 2219697 D 595495 CDS YP_005277795.1 378712902 11776954 complement(2220626..2221651) 1 NC_016902.1 KEGG: sbc:SbBS512_E1857 DNA-binding transcriptional repressor PurR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; LacI family transcriptional regulator 2221651 11776954 EKO11_2115 Escherichia coli KO11FL LacI family transcriptional regulator YP_005277795.1 2220626 R 595495 CDS YP_005277796.1 378712903 11776955 complement(2221639..2221863) 1 NC_016902.1 manually curated; KEGG: cko:CKO_01671 hypothetical protein; hypothetical protein 2221863 11776955 EKO11_2116 Escherichia coli KO11FL hypothetical protein YP_005277796.1 2221639 R 595495 CDS YP_005277797.1 378712904 11776956 2222205..2223374 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_1883 putative transport protein; major facilitator superfamily protein 2223374 11776956 EKO11_2117 Escherichia coli KO11FL major facilitator superfamily protein YP_005277797.1 2222205 D 595495 CDS YP_005277798.1 378712905 11776957 complement(2223609..2224190) 1 NC_016902.1 KEGG: sdy:SDY_1882 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; Superoxide dismutase 2224190 11776957 EKO11_2118 Escherichia coli KO11FL Superoxide dismutase YP_005277798.1 2223609 R 595495 CDS YP_005277799.1 378712906 11776958 complement(2224318..2225133) 1 NC_016902.1 PFAM: NLP/P60 protein; KEGG: sbc:SbBS512_E1852 NlpC/P60 family protein; NLP/P60 protein 2225133 11776958 EKO11_2119 Escherichia coli KO11FL NLP/P60 protein YP_005277799.1 2224318 R 595495 CDS YP_005277800.1 378712907 11776959 2225468..2225815 1 NC_016902.1 KEGG: sdy:SDY_1880 hypothetical protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; glutaredoxin-like protein 2225815 11776959 EKO11_2120 Escherichia coli KO11FL glutaredoxin-like protein YP_005277800.1 2225468 D 595495 CDS YP_005277801.1 378712908 11776960 complement(2225866..2230482) 1 NC_016902.1 KEGG: eoi:ECO111_2123 putative ATP-dependent helicase Lhr; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; AAA ATPase; helicase domain protein; DEAD/DEAH box helicase 2230482 11776960 EKO11_2121 Escherichia coli KO11FL DEAD/DEAH box helicase YP_005277801.1 2225866 R 595495 CDS YP_005277802.1 378712909 11776961 complement(2230575..2231222) 1 NC_016902.1 TIGRFAM: ribonuclease T; PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: sdy:SDY_1878 ribonuclease T; SMART: Exonuclease; ribonuclease T 2231222 11776961 EKO11_2122 Escherichia coli KO11FL ribonuclease T YP_005277802.1 2230575 R 595495 CDS YP_005277803.1 378712910 11776962 complement(2231325..2231732) 1 NC_016902.1 TIGRFAM: lactoylglutathione lyase; KEGG: sdy:SDY_1877 glyoxalase I; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2231732 11776962 EKO11_2123 Escherichia coli KO11FL lactoylglutathione lyase YP_005277803.1 2231325 R 595495 CDS YP_005277804.1 378712911 11776963 complement(2231813..2232910) 1 NC_016902.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: eoh:ECO103_1791 N-ethylmaleimide reductase; NADH:flavin oxidoreductase 2232910 11776963 EKO11_2124 Escherichia coli KO11FL NADH:flavin oxidoreductase YP_005277804.1 2231813 R 595495 CDS YP_005277805.1 378712912 11776964 complement(2232947..2233546) 1 NC_016902.1 PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E1841 transcriptional regulator, TetR family; TetR family transcriptional regulator 2233546 11776964 EKO11_2125 Escherichia coli KO11FL TetR family transcriptional regulator YP_005277805.1 2232947 R 595495 CDS YP_005277806.1 378712913 11776966 2233937..2234833 1 NC_016902.1 PFAM: aldo/keto reductase; KEGG: eoi:ECO111_2117 putative oxidoreductase; aldo/keto reductase 2234833 11776966 EKO11_2127 Escherichia coli KO11FL aldo/keto reductase YP_005277806.1 2233937 D 595495 CDS YP_005277807.1 378712914 11776967 2234899..2235435 1 NC_016902.1 KEGG: sfx:S1805 superoxide dismutase; manually curated; PFAM: superoxide dismutase copper/zinc binding; superoxide dismutase copper/zinc binding protein 2235435 11776967 EKO11_2128 Escherichia coli KO11FL superoxide dismutase copper/zinc binding protein YP_005277807.1 2234899 D 595495 CDS YP_005277808.1 378712915 11776968 complement(2235436..2237448) 1 NC_016902.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: eoi:ECO111_2115 hypothetical protein; fusaric acid resistance protein 2237448 11776968 EKO11_2129 Escherichia coli KO11FL fusaric acid resistance protein YP_005277808.1 2235436 R 595495 CDS YP_005277809.1 378712916 11776969 complement(2237448..2238305) 1 NC_016902.1 KEGG: ebd:ECBD_1999 secretion protein HlyD family protein; manually curated; PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 2238305 11776969 EKO11_2130 Escherichia coli KO11FL secretion protein HlyD family protein YP_005277809.1 2237448 R 595495 CDS YP_005277810.1 378712917 11776970 complement(2238308..2238544) 1 NC_016902.1 PFAM: protein of unknown function DUF1656; KEGG: ssn:SSON_1513 hypothetical protein; hypothetical protein 2238544 11776970 EKO11_2131 Escherichia coli KO11FL hypothetical protein YP_005277810.1 2238308 R 595495 CDS YP_005277811.1 378712918 11776971 2238745..2239179 1 NC_016902.1 KEGG: sfv:SFV_1661 transcriptional regulator SlyA; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 2239179 11776971 EKO11_2132 Escherichia coli KO11FL MarR family transcriptional regulator YP_005277811.1 2238745 D 595495 CDS YP_005277812.1 378712919 11776972 complement(2239226..2239693) 1 NC_016902.1 KEGG: sdy:SDY_1864 putative outer membrane protein; putative outer membrane protein 2239693 11776972 EKO11_2133 Escherichia coli KO11FL putative outer membrane protein YP_005277812.1 2239226 R 595495 CDS YP_005277813.1 378712920 11776973 2239967..2241076 1 NC_016902.1 PFAM: protein of unknown function UPF0075; KEGG: eoi:ECO111_2110 anhydro-N-acetylmuramic acid kinase; hypothetical protein 2241076 11776973 EKO11_2134 Escherichia coli KO11FL hypothetical protein YP_005277813.1 2239967 D 595495 CDS YP_005277814.1 378712921 11776974 2241180..2241503 1 NC_016902.1 PFAM: Protein of unknown function DUF2091, periplasmic; KEGG: sbc:SbBS512_E1831 lysozyme inhibitor; hypothetical protein 2241503 11776974 EKO11_2135 Escherichia coli KO11FL hypothetical protein YP_005277814.1 2241180 D 595495 CDS YP_005277815.1 378712922 11776975 2241562..2242218 1 NC_016902.1 TIGRFAM: pyridoxamine 5'-phosphate oxidase; KEGG: sbc:SbBS512_E1830 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; Pyridoxine 5'-phosphate oxidase, dimerisation-like; pyridoxamine 5'-phosphate oxidase 2242218 11776975 EKO11_2136 Escherichia coli KO11FL pyridoxamine 5'-phosphate oxidase YP_005277815.1 2241562 D 595495 CDS YP_005277816.1 378712923 11779514 2242347..2243621 1 NC_016902.1 SMART: RNA-binding S4 domain protein; TIGRFAM: tyrosyl-tRNA synthetase; KEGG: sbc:SbBS512_E1829 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 2243621 11779514 EKO11_2137 Escherichia coli KO11FL tyrosyl-tRNA synthetase YP_005277816.1 2242347 D 595495 CDS YP_005277817.1 378712924 11779515 2243683..2244543 1 NC_016902.1 TIGRFAM: pyridoxal kinase; KEGG: sbo:SBO_1498 pyridoxamine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; pyridoxal kinase 2244543 11779515 EKO11_2138 Escherichia coli KO11FL pyridoxal kinase YP_005277817.1 2243683 D 595495 CDS YP_005277818.1 378712925 11776976 complement(2244587..2245192) 1 NC_016902.1 PFAM: Glutathione S-transferase domain; KEGG: sdy:SDY_1858 glutathionine S-transferase; glutathione S-transferase 2245192 11776976 EKO11_2139 Escherichia coli KO11FL glutathione S-transferase YP_005277818.1 2244587 R 595495 CDS YP_005277819.1 378712926 11776977 complement(2245297..2246799) 1 NC_016902.1 KEGG: sbc:SbBS512_E1824 putative tripeptide transporter permease; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; amino acid/peptide transporter 2246799 11776977 EKO11_2140 Escherichia coli KO11FL amino acid/peptide transporter YP_005277819.1 2245297 R 595495 CDS YP_005277820.1 378712927 11776978 complement(2247082..2247282) 1 NC_016902.1 KEGG: ebd:ECBD_2010 hypothetical protein; hypothetical protein 2247282 11776978 EKO11_2141 Escherichia coli KO11FL hypothetical protein YP_005277820.1 2247082 R 595495 CDS YP_005277821.1 378712928 11776979 complement(2247410..2248045) 1 NC_016902.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: sbc:SbBS512_E1822 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III 2248045 11776979 EKO11_2142 Escherichia coli KO11FL endonuclease III YP_005277821.1 2247410 R 595495 CDS YP_005277822.1 378712929 11776980 complement(2248045..2248740) 1 NC_016902.1 KEGG: sdy:SDY_1855 electron transport complex RsxE subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; RnfABCDGE type electron transport complex subunit E 2248740 11776980 EKO11_2143 Escherichia coli KO11FL RnfABCDGE type electron transport complex subunit E YP_005277822.1 2248045 R 595495 CDS YP_005277823.1 378712930 11776981 complement(2248744..2249364) 1 NC_016902.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: sbc:SbBS512_E1820 electron transport complex protein RnfG; SMART: FMN-binding domain protein; RnfABCDGE type electron transport complex subunit G 2249364 11776981 EKO11_2144 Escherichia coli KO11FL RnfABCDGE type electron transport complex subunit G YP_005277823.1 2248744 R 595495 CDS YP_005277824.1 378712931 11776982 complement(2249368..2250426) 1 NC_016902.1 KEGG: sfv:SFV_1647 electron transport complex protein RnfD; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; RnfABCDGE type electron transport complex subunit D 2250426 11776982 EKO11_2145 Escherichia coli KO11FL RnfABCDGE type electron transport complex subunit D YP_005277824.1 2249368 R 595495 CDS YP_005277825.1 378712932 11776983 complement(2250427..2252649) 1 NC_016902.1 KEGG: eoh:ECO103_1770 electron transport complex protein RnfC; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; RnfABCDGE type electron transport complex subunit C 2252649 11776983 EKO11_2146 Escherichia coli KO11FL RnfABCDGE type electron transport complex subunit C YP_005277825.1 2250427 R 595495 CDS YP_005277826.1 378712933 11776984 complement(2252642..2253220) 1 NC_016902.1 KEGG: ssn:SSON_1530 electron transport complex protein RnfB; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; RnfABCDGE type electron transport complex subunit B 2253220 11776984 EKO11_2147 Escherichia coli KO11FL RnfABCDGE type electron transport complex subunit B YP_005277826.1 2252642 R 595495 CDS YP_005277827.1 378712934 11776985 complement(2253220..2253801) 1 NC_016902.1 KEGG: sdy:SDY_1850 Na(+)-translocating NADH-quinone reductase subunit E; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; RnfABCDGE type electron transport complex subunit A 2253801 11776985 EKO11_2148 Escherichia coli KO11FL RnfABCDGE type electron transport complex subunit A YP_005277827.1 2253220 R 595495 CDS YP_005277828.1 378712935 11779516 complement(2253878..2254318) 1 NC_016902.1 PFAM: Protein of unknown function DUF2569; KEGG: ssn:SSON_1532 hypothetical protein; hypothetical protein 2254318 11779516 EKO11_2149 Escherichia coli KO11FL hypothetical protein YP_005277828.1 2253878 R 595495 CDS YP_005277829.1 378712936 11779517 complement(2254404..2254619) 1 NC_016902.1 PFAM: Haemolysin expression modulating family protein; KEGG: sdy:SDY_1848 OriC-binding nucleoid-associated protein; hemolysin expression modulating family protein 2254619 11779517 EKO11_2150 Escherichia coli KO11FL hemolysin expression modulating family protein YP_005277829.1 2254404 R 595495 CDS YP_005277830.1 378712937 11776986 complement(2254892..2255092) 1 NC_016902.1 manually curated; KEGG: ebd:ECBD_2020 hypothetical protein; hypothetical protein 2255092 11776986 EKO11_2151 Escherichia coli KO11FL hypothetical protein YP_005277830.1 2254892 R 595495 CDS YP_005277831.1 378712938 11776987 2255260..2256300 1 NC_016902.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sbo:SBO_1510 putative oxidoreductase; oxidoreductase domain-containing protein 2256300 11776987 EKO11_2152 Escherichia coli KO11FL oxidoreductase domain-containing protein YP_005277831.1 2255260 D 595495 CDS YP_005277832.1 378712939 11776988 complement(2256335..2257336) 1 NC_016902.1 TIGRFAM: adenosine deaminase; KEGG: ebd:ECBD_2022 adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 2257336 11776988 EKO11_2153 Escherichia coli KO11FL adenosine deaminase YP_005277832.1 2256335 R 595495 CDS YP_005277833.1 378712940 11776989 complement(2257440..2258612) 1 NC_016902.1 PFAM: aminotransferase class I and II; KEGG: eoh:ECO103_1762 bifunctional beta-cystathionase, PLP-dependent and regulator of maltose regulon; class I and II aminotransferase 2258612 11776989 EKO11_2154 Escherichia coli KO11FL class I and II aminotransferase YP_005277833.1 2257440 R 595495 CDS YP_005277834.1 378712941 11776990 complement(2258622..2260214) 1 NC_016902.1 TIGRFAM: PTS system, maltose and glucose-specific IIBC subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-like IIB subunint; KEGG: ssn:SSON_1537 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; PTS system maltose and glucose-specific transporter subunit IIBC 2260214 11776990 EKO11_2155 Escherichia coli KO11FL PTS system maltose and glucose-specific transporter subunit IIBC YP_005277834.1 2258622 R 595495 CDS YP_005277835.1 378712942 11776991 2260389..2261417 1 NC_016902.1 KEGG: sbc:SbBS512_E1808 DNA-binding transcriptional repressor MalI; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; LacI family transcriptional regulator 2261417 11776991 EKO11_2156 Escherichia coli KO11FL LacI family transcriptional regulator YP_005277835.1 2260389 D 595495 CDS YP_005277836.1 378712943 11776992 2261529..2262296 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eoh:ECO103_1759 7-alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase SDR 2262296 11776992 EKO11_2157 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005277836.1 2261529 D 595495 CDS YP_005277837.1 378712944 11776993 2262537..2263115 1 NC_016902.1 PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E1805 transcriptional regulator UidR; regulatory protein TetR 2263115 11776993 EKO11_2158 Escherichia coli KO11FL regulatory protein TetR YP_005277837.1 2262537 D 595495 CDS YP_005277838.1 378712945 11776994 2263503..2265314 1 NC_016902.1 KEGG: eoh:ECO103_1757 beta-D-glucuronidase; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; Beta-glucuronidase 2265314 11776994 EKO11_2159 Escherichia coli KO11FL Beta-glucuronidase YP_005277838.1 2263503 D 595495 CDS YP_005277839.1 378712946 11776995 2265311..2266684 1 NC_016902.1 KEGG: eoj:ECO26_2344 glucuronide transporter; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; sugar (Glycoside-Pentoside-Hexuronide) transporter 2266684 11776995 EKO11_2160 Escherichia coli KO11FL sugar (Glycoside-Pentoside-Hexuronide) transporter YP_005277839.1 2265311 D 595495 CDS YP_005277840.1 378712947 11776996 2266723..2267988 1 NC_016902.1 PFAM: outer membrane porin; KEGG: ebd:ECBD_2030 putative outer membrane porin protein; outer membrane porin 2267988 11776996 EKO11_2161 Escherichia coli KO11FL outer membrane porin YP_005277840.1 2266723 D 595495 CDS YP_005277841.1 378712948 11776997 complement(2268049..2268144) 1 NC_016902.1 KEGG: ebd:ECBD_2031 hypothetical protein; hypothetical protein 2268144 11776997 EKO11_2162 Escherichia coli KO11FL hypothetical protein YP_005277841.1 2268049 R 595495 CDS YP_005277842.1 378712949 11776998 complement(2268214..2269722) 1 NC_016902.1 PFAM: protein of unknown function DUF945; KEGG: ebd:ECBD_2032 protein of unknown function DUF945; hypothetical protein 2269722 11776998 EKO11_2163 Escherichia coli KO11FL hypothetical protein YP_005277842.1 2268214 R 595495 CDS YP_005277843.1 378712950 11776999 complement(2269823..2270998) 1 NC_016902.1 TIGRFAM: mannose-6-phosphate isomerase, class I; KEGG: sdy:SDY_1829 mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type I; mannose-6-phosphate isomerase 2270998 11776999 EKO11_2164 Escherichia coli KO11FL mannose-6-phosphate isomerase YP_005277843.1 2269823 R 595495 CDS YP_005277844.1 378712951 11777000 2271197..2272843 1 NC_016902.1 KEGG: sbc:SbBS512_E1798 fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 2272843 11777000 EKO11_2165 Escherichia coli KO11FL Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta YP_005277844.1 2271197 D 595495 CDS YP_005277845.1 378712952 11777001 2272986..2274389 1 NC_016902.1 KEGG: sbc:SbBS512_E1796 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like; class II fumarate hydratase 2274389 11777001 EKO11_2166 Escherichia coli KO11FL class II fumarate hydratase YP_005277845.1 2272986 D 595495 CDS YP_005277846.1 378712953 11777002 complement(2274386..2275315) 1 NC_016902.1 KEGG: sfv:SFV_1626 DNA replication terminus site-binding protein; TIGRFAM: DNA replication terminus site-binding protein; PFAM: site-binding protein DNA replication region; DNA replication terminus site-binding protein 2275315 11777002 EKO11_2167 Escherichia coli KO11FL DNA replication terminus site-binding protein YP_005277846.1 2274386 R 595495 CDS YP_005277847.1 378712954 11777003 complement(2275391..2276692) 1 NC_016902.1 KEGG: eoi:ECO111_2078 sensor protein RstB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 2276692 11777003 EKO11_2168 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005277847.1 2275391 R 595495 CDS YP_005277848.1 378712955 11777004 complement(2276696..2277475) 1 NC_016902.1 manually curated; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: sfv:SFV_1623 DNA-binding transcriptional regulator RstA; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 2277475 11777004 EKO11_2169 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005277848.1 2276696 R 595495 CDS YP_005277849.1 378712956 11777005 2277544..2277879 1 NC_016902.1 PFAM: GlpM family protein; KEGG: sdy:SDY_1546 hypothetical protein; GlpM family protein 2277879 11777005 EKO11_2170 Escherichia coli KO11FL GlpM family protein YP_005277849.1 2277544 D 595495 CDS YP_005277850.1 378712957 11777006 complement(2277876..2278598) 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eoh:ECO103_1746 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2278598 11777006 EKO11_2171 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005277850.1 2277876 R 595495 CDS YP_005277851.1 378712958 11777007 complement(2278635..2280017) 1 NC_016902.1 KEGG: sfv:SFV_1620 putative arginine/ornithine antiporter; TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; arginine/ornithine antiporter 2280017 11777007 EKO11_2172 Escherichia coli KO11FL arginine/ornithine antiporter YP_005277851.1 2278635 R 595495 CDS YP_005277852.1 378712959 11777008 complement(2280203..2281147) 1 NC_016902.1 PFAM: protein of unknown function DUF1471; KEGG: sdy:SDY_1549 hypothetical protein; hypothetical protein 2281147 11777008 EKO11_2173 Escherichia coli KO11FL hypothetical protein YP_005277852.1 2280203 R 595495 CDS YP_005277853.1 378712960 11777009 2281617..2283203 1 NC_016902.1 manually curated; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; KEGG: eok:G2583_1997 NAD(P) transhydrogenase, alpha subunit; PFAM: alanine dehydrogenase/PNT domain protein; NAD(P) transhydrogenase subunit alpha 2283203 11777009 EKO11_2174 Escherichia coli KO11FL NAD(P) transhydrogenase subunit alpha YP_005277853.1 2281617 D 595495 CDS YP_005277854.1 378712961 11777010 2283214..2284602 1 NC_016902.1 KEGG: sdy:SDY_1551 pyridine nucleotide transhydrogenase; PFAM: NAD(P) transhydrogenase beta subunit; NAD(P)(+) transhydrogenase 2284602 11777010 EKO11_2175 Escherichia coli KO11FL NAD(P)(+) transhydrogenase YP_005277854.1 2283214 D 595495 CDS YP_005277855.1 378712962 11777011 complement(2284627..2285661) 1 NC_016902.1 PFAM: protein of unknown function UPF0118; KEGG: sbc:SbBS512_E1787 putative transport protein; hypothetical protein 2285661 11777011 EKO11_2176 Escherichia coli KO11FL hypothetical protein YP_005277855.1 2284627 R 595495 CDS YP_005277856.1 378712963 11777012 2285796..2285966 1 NC_016902.1 manually curated; KEGG: sec:SC1499 hypothetical protein; hypothetical protein 2285966 11777012 EKO11_2177 Escherichia coli KO11FL hypothetical protein YP_005277856.1 2285796 D 595495 CDS YP_005277857.1 378712964 11777013 2286073..2286438 1 NC_016902.1 PFAM: small multidrug resistance protein; KEGG: sdy:SDY_1553 multidrug efflux system protein MdtJ; small multidrug resistance protein 2286438 11777013 EKO11_2178 Escherichia coli KO11FL small multidrug resistance protein YP_005277857.1 2286073 D 595495 CDS YP_005277858.1 378712965 11777014 2286425..2286754 1 NC_016902.1 PFAM: small multidrug resistance protein; KEGG: sbc:SbBS512_E1785 multidrug efflux system protein MdtI; small multidrug resistance protein 2286754 11777014 EKO11_2179 Escherichia coli KO11FL small multidrug resistance protein YP_005277858.1 2286425 D 595495 CDS YP_005277859.1 378712966 11777015 complement(2286793..2287614) 1 NC_016902.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sfv:SFV_1613 hypothetical protein; peptidase S1 and S6 chymotrypsin/Hap 2287614 11777015 EKO11_2180 Escherichia coli KO11FL peptidase S1 and S6 chymotrypsin/Hap YP_005277859.1 2286793 R 595495 CDS YP_005277860.1 378712967 11777016 complement(2287890..2288198) 1 NC_016902.1 PFAM: Acid shock repeat protein; KEGG: sdy:SDY_1556 acid shock protein precursor; Acid shock repeat protein 2288198 11777016 EKO11_2181 Escherichia coli KO11FL Acid shock repeat protein YP_005277860.1 2287890 R 595495 CDS YP_005277861.1 378712968 11779518 complement(2288622..2289875) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_1568 putative transport protein; major facilitator superfamily protein 2289875 11779518 EKO11_2182 Escherichia coli KO11FL major facilitator superfamily protein YP_005277861.1 2288622 R 595495 CDS YP_005277862.1 378712969 11777017 2289982..2290875 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eok:G2583_1989 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2290875 11777017 EKO11_2183 Escherichia coli KO11FL LysR family transcriptional regulator YP_005277862.1 2289982 D 595495 CDS YP_005277863.1 378712970 11777018 2291010..2292230 1 NC_016902.1 PFAM: ROK family protein; KEGG: eok:G2583_1988 putative NAGC-like transcriptional regulator; ROK family protein 2292230 11777018 EKO11_2184 Escherichia coli KO11FL ROK family protein YP_005277863.1 2291010 D 595495 CDS YP_005277864.1 378712971 11779519 2292355..2293050 1 NC_016902.1 TIGRFAM: dethiobiotin synthase; KEGG: ebd:ECBD_2053 putative dithiobiotin synthetase; dethiobiotin synthase 2293050 11779519 EKO11_2185 Escherichia coli KO11FL dethiobiotin synthase YP_005277864.1 2292355 D 595495 CDS YP_005277865.1 378712972 11777019 complement(2293003..2294319) 1 NC_016902.1 KEGG: sfv:SFV_1607 putative voltage-gated ClC-type chloride channel ClcB; manually curated; PFAM: Cl- channel voltage-gated family protein; Cl- channel voltage-gated family protein 2294319 11777019 EKO11_2186 Escherichia coli KO11FL Cl- channel voltage-gated family protein YP_005277865.1 2293003 R 595495 CDS YP_005277866.1 378712973 11777020 complement(2294454..2295068) 1 NC_016902.1 KEGG: ssn:SSON_1573 twin-argninine leader-binding protein DmsD; twin-argninine leader-binding protein DmsD 2295068 11777020 EKO11_2187 Escherichia coli KO11FL twin-argninine leader-binding protein DmsD YP_005277866.1 2294454 R 595495 CDS YP_005277867.1 378712974 11777021 complement(2295111..2295965) 1 NC_016902.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: ebd:ECBD_2056 DMSO reductase anchor subunit (DmsC); DMSO reductase anchor subunit DmsC 2295965 11777021 EKO11_2188 Escherichia coli KO11FL DMSO reductase anchor subunit DmsC YP_005277867.1 2295111 R 595495 CDS YP_005277868.1 378712975 11777022 complement(2295967..2296584) 1 NC_016902.1 TIGRFAM: dimethylsulfoxide reductase, chain B; KEGG: sdy:SDY_1567 putative oxidoreductase, Fe-S subunit; dimethylsulfoxide reductase subunit B 2296584 11777022 EKO11_2189 Escherichia coli KO11FL dimethylsulfoxide reductase subunit B YP_005277868.1 2295967 R 595495 CDS YP_005277869.1 378712976 11779520 complement(2296595..2298991) 1 NC_016902.1 KEGG: ebd:ECBD_2058 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; anaerobic dimethyl sulfoxide reductase subunit A 2298991 11779520 EKO11_2190 Escherichia coli KO11FL anaerobic dimethyl sulfoxide reductase subunit A YP_005277869.1 2296595 R 595495 CDS YP_005277870.1 378712977 11777023 complement(2299079..2301505) 1 NC_016902.1 KEGG: eoh:ECO103_1726 oxidoreductase subunit; TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; anaerobic dimethyl sulfoxide reductase subunit A 2301505 11777023 EKO11_2191 Escherichia coli KO11FL anaerobic dimethyl sulfoxide reductase subunit A YP_005277870.1 2299079 R 595495 CDS YP_005277871.1 378712978 11777024 complement(2301704..2302009) 1 NC_016902.1 PFAM: protein of unknown function DUF1161; KEGG: eoh:ECO103_1725 hypothetical protein; hypothetical protein 2302009 11777024 EKO11_2192 Escherichia coli KO11FL hypothetical protein YP_005277871.1 2301704 R 595495 CDS YP_005277872.1 378712979 11779521 2302081..2302827 1 NC_016902.1 PFAM: protein of unknown function UPF0257; KEGG: sbc:SbBS512_E1771 hypothetical protein; hypothetical protein 2302827 11779521 EKO11_2193 Escherichia coli KO11FL hypothetical protein YP_005277872.1 2302081 D 595495 CDS YP_005277873.1 378712980 11777025 complement(2302830..2303390) 1 NC_016902.1 KEGG: ebd:ECBD_2062 diamine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; Diamine N-acetyltransferase 2303390 11777025 EKO11_2194 Escherichia coli KO11FL Diamine N-acetyltransferase YP_005277873.1 2302830 R 595495 CDS YP_005277874.1 378712981 11777026 complement(2303425..2303766) 1 NC_016902.1 PFAM: protein of unknown function DUF1283; KEGG: sfv:SFV_1561 hypothetical protein; hypothetical protein 2303766 11777026 EKO11_2195 Escherichia coli KO11FL hypothetical protein YP_005277874.1 2303425 R 595495 CDS YP_005277875.1 378712982 11777027 2303901..2304227 1 NC_016902.1 PFAM: protein of unknown function UPF0060; KEGG: ebd:ECBD_2064 hypothetical protein; hypothetical protein 2304227 11777027 EKO11_2196 Escherichia coli KO11FL hypothetical protein YP_005277875.1 2303901 D 595495 CDS YP_005277876.1 378712983 11777028 2304433..2305647 1 NC_016902.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ebd:ECBD_2065 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 2305647 11777028 EKO11_2197 Escherichia coli KO11FL mandelate racemase/muconate lactonizing protein YP_005277876.1 2304433 D 595495 CDS YP_005277877.1 378712984 11777029 2305659..2306678 1 NC_016902.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: eoi:ECO111_2047 putative dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 2306678 11777029 EKO11_2198 Escherichia coli KO11FL alcohol dehydrogenase GroES domain-containing protein YP_005277877.1 2305659 D 595495 CDS YP_005277878.1 378712985 11777030 2306736..2306846 1 NC_016902.1 KEGG: eok:G2583_1973 inner membrane metabolite transport protein YdfJ; inner membrane metabolite transport protein YdfJ 2306846 11777030 EKO11_2199 Escherichia coli KO11FL inner membrane metabolite transport protein YdfJ YP_005277878.1 2306736 D 595495 CDS YP_005277879.1 378712986 11777031 complement(2306866..2308146) 1 NC_016902.1 PFAM: integrase family protein; KEGG: eoi:ECO111_2046 putative integrase; integrase family protein 2308146 11777031 EKO11_2200 Escherichia coli KO11FL integrase family protein YP_005277879.1 2306866 R 595495 CDS YP_005277880.1 378712987 11777032 complement(2308181..2308417) 1 NC_016902.1 PFAM: protein of unknown function DUF1233 excisionase; KEGG: ebr:ECB_01546 excisionase; hypothetical protein 2308417 11777032 EKO11_2201 Escherichia coli KO11FL hypothetical protein YP_005277880.1 2308181 R 595495 CDS YP_005277881.1 378712988 11777033 complement(2308505..2310982) 1 NC_016902.1 PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: eoj:ECO26_2208 putative exonuclease; Exonuclease RNase T and DNA polymerase III 2310982 11777033 EKO11_2202 Escherichia coli KO11FL Exonuclease RNase T and DNA polymerase III YP_005277881.1 2308505 R 595495 CDS YP_005277882.1 378712989 11779522 complement(2311075..2311266) 1 NC_016902.1 PFAM: protein of unknown function DUF1482; KEGG: ebw:BWG_1393 Qin prophage; hypothetical protein; hypothetical protein 2311266 11779522 EKO11_2203 Escherichia coli KO11FL hypothetical protein YP_005277882.1 2311075 R 595495 CDS YP_005277883.1 378712990 11777034 complement(2311263..2311451) 1 NC_016902.1 PFAM: DicB family protein; KEGG: eoi:ECO111_2042 putative cell division inhibition protein DicB; DicB family protein 2311451 11777034 EKO11_2204 Escherichia coli KO11FL DicB family protein YP_005277883.1 2311263 R 595495 CDS YP_005277884.1 378712991 11777035 2311722..2312015 1 NC_016902.1 manually curated; KEGG: etw:ECSP_1720 hypothetical protein; hypothetical protein 2312015 11777035 EKO11_2205 Escherichia coli KO11FL hypothetical protein YP_005277884.1 2311722 D 595495 CDS YP_005277885.1 378712992 11777036 complement(2312019..2312237) 1 NC_016902.1 KEGG: eoi:ECO111_1407 hypothetical protein; hypothetical protein 2312237 11777036 EKO11_2206 Escherichia coli KO11FL hypothetical protein YP_005277885.1 2312019 R 595495 CDS YP_005277886.1 378712993 11779523 complement(2312267..2312395) 1 NC_016902.1 KEGG: ebw:BWG_1391 Qin prophage; hypothetical protein; putative Qin prophage protein 2312395 11779523 EKO11_2207 Escherichia coli KO11FL putative Qin prophage protein YP_005277886.1 2312267 R 595495 CDS YP_005277887.1 378712994 11777037 complement(2312397..2312552) 1 NC_016902.1 PFAM: protein of unknown function DUF1391; KEGG: eoh:ECO103_2282 hypothetical protein; hypothetical protein 2312552 11777037 EKO11_2208 Escherichia coli KO11FL hypothetical protein YP_005277887.1 2312397 R 595495 CDS YP_005277888.1 378712995 11777038 complement(2312719..2313126) 1 NC_016902.1 KEGG: ebw:BWG_1389 transcriptional repressor DicA; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 2313126 11777038 EKO11_2209 Escherichia coli KO11FL helix-turn-helix domain-containing protein YP_005277888.1 2312719 R 595495 CDS YP_005277889.1 378712996 11779524 2313210..2313440 1 NC_016902.1 KEGG: ebw:BWG_1388 DNA-binding transcriptional regulator DicC; DNA-binding transcriptional regulator DicC 2313440 11779524 EKO11_2210 Escherichia coli KO11FL DNA-binding transcriptional regulator DicC YP_005277889.1 2313210 D 595495 CDS YP_005277890.1 378712997 11777039 2313424..2313945 1 NC_016902.1 PFAM: protein of unknown function DUF1019; KEGG: eoj:ECO26_2201 putative phage regulatory protein CII; hypothetical protein 2313945 11777039 EKO11_2211 Escherichia coli KO11FL hypothetical protein YP_005277890.1 2313424 D 595495 CDS YP_005277891.1 378712998 11777040 2313926..2314891 1 NC_016902.1 KEGG: eok:G2583_2473 phage O protein family; phage O protein family 2314891 11777040 EKO11_2212 Escherichia coli KO11FL phage O protein family YP_005277891.1 2313926 D 595495 CDS YP_005277892.1 378712999 11779525 2314932..2315354 1 NC_016902.1 PFAM: protein of unknown function DUF977; KEGG: ebr:ECB_01535 hypothetical protein; hypothetical protein 2315354 11779525 EKO11_2213 Escherichia coli KO11FL hypothetical protein YP_005277892.1 2314932 D 595495 CDS YP_005277893.1 378713000 11777044 2316860..2317039 1 NC_016902.1 KEGG: sbo:SBO_0964 hypothetical protein; hypothetical protein 2317039 11777044 EKO11_2217 Escherichia coli KO11FL hypothetical protein YP_005277893.1 2316860 D 595495 CDS YP_005277894.1 378713001 11777045 complement(2317014..2317196) 1 NC_016902.1 KEGG: sty:STY2055 hypothetical protein; hypothetical protein 2317196 11777045 EKO11_2218 Escherichia coli KO11FL hypothetical protein YP_005277894.1 2317014 R 595495 CDS YP_005277895.1 378713002 11777046 2317374..2318687 1 NC_016902.1 PFAM: Integrase catalytic region; KEGG: enc:ECL_A109 putative transposase; integrase catalytic subunit 2318687 11777046 EKO11_2219 Escherichia coli KO11FL integrase catalytic subunit YP_005277895.1 2317374 D 595495 CDS YP_005277896.1 378713003 11777047 complement(2319124..2319456) 1 NC_016902.1 KEGG: ebw:BWG_1385 Qin prophage; hypothetical protein; putative Qin prophage protein 2319456 11777047 EKO11_2220 Escherichia coli KO11FL putative Qin prophage protein YP_005277896.1 2319124 R 595495 CDS YP_005277897.1 378713004 11777048 complement(2319659..2319964) 1 NC_016902.1 manually curated; KEGG: ebw:BWG_1384 Qin prophage; hypothetical protein; putative Qin prophage protein 2319964 11777048 EKO11_2221 Escherichia coli KO11FL putative Qin prophage protein YP_005277897.1 2319659 R 595495 CDS YP_005277898.1 378713005 11777049 2319989..2320228 1 NC_016902.1 KEGG: ent:Ent638_4262 bifunctional antitoxin/transcriptional repressor RelB; TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; RelB/DinJ family addiction module antitoxin 2320228 11777049 EKO11_2222 Escherichia coli KO11FL RelB/DinJ family addiction module antitoxin YP_005277898.1 2319989 D 595495 CDS YP_005277899.1 378713006 11777050 2320228..2320515 1 NC_016902.1 KEGG: sfx:S1669 hypothetical protein; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; RelE/StbE family addiction module toxin 2320515 11777050 EKO11_2223 Escherichia coli KO11FL RelE/StbE family addiction module toxin YP_005277899.1 2320228 D 595495 CDS YP_005277900.1 378713007 11777052 2320959..2321210 1 NC_016902.1 KEGG: eoj:ECO26_2192 hypothetical protein; hypothetical protein 2321210 11777052 EKO11_2225 Escherichia coli KO11FL hypothetical protein YP_005277900.1 2320959 D 595495 CDS YP_005277901.1 378713008 11777053 2321557..2322606 1 NC_016902.1 SMART: HNH nuclease; KEGG: eoj:ECO26_2191 hypothetical protein; HNH nuclease 2322606 11777053 EKO11_2226 Escherichia coli KO11FL HNH nuclease YP_005277901.1 2321557 D 595495 CDS YP_005277902.1 378713009 11777054 2322620..2323372 1 NC_016902.1 PFAM: antitermination protein; KEGG: ebw:BWG_1378 Qin prophage; putative antitermination protein Q; antitermination protein 2323372 11777054 EKO11_2227 Escherichia coli KO11FL antitermination protein YP_005277902.1 2322620 D 595495 CDS YP_005277903.1 378713010 11777055 complement(2323794..2324006) 1 NC_016902.1 KEGG: efe:EFER_4435 cold shock protein; Qin prophage; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock protein 2324006 11777055 EKO11_2228 Escherichia coli KO11FL cold-shock protein YP_005277903.1 2323794 R 595495 CDS YP_005277904.1 378713011 11777056 2324307..2324522 1 NC_016902.1 KEGG: ebw:BWG_1376 Qin prophage; cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock protein 2324522 11777056 EKO11_2229 Escherichia coli KO11FL cold-shock protein YP_005277904.1 2324307 D 595495 CDS YP_005277905.1 378713012 11779526 complement(2325124..2325243) 1 NC_016902.1 hypothetical protein 2325243 11779526 EKO11_2230 Escherichia coli KO11FL hypothetical protein YP_005277905.1 2325124 R 595495 CDS YP_005277906.1 378713013 11777057 2325285..2325491 1 NC_016902.1 PFAM: Lysis S family protein; KEGG: eoj:ECO26_2187 putative holin protein; Lysis S family protein 2325491 11777057 EKO11_2231 Escherichia coli KO11FL Lysis S family protein YP_005277906.1 2325285 D 595495 CDS YP_005277907.1 378713014 11777058 2325496..2325807 1 NC_016902.1 PFAM: protein of unknown function DUF1327; KEGG: ebw:BWG_1374 Qin prophage; hypothetical protein; hypothetical protein 2325807 11777058 EKO11_2232 Escherichia coli KO11FL hypothetical protein YP_005277907.1 2325496 D 595495 CDS YP_005277908.1 378713015 11779527 2325804..2326337 1 NC_016902.1 KEGG: eoj:ECO26_2185 putative endolysin; PFAM: glycoside hydrolase family 24; lysozyme 2326337 11779527 EKO11_2233 Escherichia coli KO11FL lysozyme YP_005277908.1 2325804 D 595495 CDS YP_005277909.1 378713016 11777059 2326334..2326831 1 NC_016902.1 PFAM: Protein of unknown function DUF2514; KEGG: eoj:ECO26_2184 hypothetical protein; hypothetical protein 2326831 11777059 EKO11_2234 Escherichia coli KO11FL hypothetical protein YP_005277909.1 2326334 D 595495 CDS YP_005277910.1 378713017 11777060 2327014..2327172 1 NC_016902.1 manually curated; KEGG: apo:Arcpr_0966 hypothetical protein; hypothetical protein 2327172 11777060 EKO11_2235 Escherichia coli KO11FL hypothetical protein YP_005277910.1 2327014 D 595495 CDS YP_005277911.1 378713018 11777061 2327194..2327406 1 NC_016902.1 KEGG: efe:EFER_4442 cold shock protein; Qin prophage; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock protein 2327406 11777061 EKO11_2236 Escherichia coli KO11FL cold-shock protein YP_005277911.1 2327194 D 595495 CDS YP_005277912.1 378713019 11777063 2327678..2327908 1 NC_016902.1 manually curated; KEGG: eok:G2583_5204 hypothetical protein; hypothetical protein 2327908 11777063 EKO11_2238 Escherichia coli KO11FL hypothetical protein YP_005277912.1 2327678 D 595495 CDS YP_005277913.1 378713020 11777064 2328080..2328253 1 NC_016902.1 PFAM: GnsAGnsB family protein; KEGG: eoj:ECO26_2181 hypothetical protein; GnsAGnsB family protein 2328253 11777064 EKO11_2239 Escherichia coli KO11FL GnsAGnsB family protein YP_005277913.1 2328080 D 595495 CDS YP_005277914.1 378713021 11777065 complement(2328405..2328815) 1 NC_016902.1 PFAM: protein of unknown function DUF1398; KEGG: ebw:BWG_1368 Qin prophage; hypothetical protein; hypothetical protein 2328815 11777065 EKO11_2240 Escherichia coli KO11FL hypothetical protein YP_005277914.1 2328405 R 595495 CDS YP_005277915.1 378713022 11777066 2329495..2330040 1 NC_016902.1 PFAM: DNA packaging Nu1; KEGG: ssn:SSON_2431 bacteriophage DNA packaging protein; DNA packaging Nu1 2330040 11777066 EKO11_2241 Escherichia coli KO11FL DNA packaging Nu1 YP_005277915.1 2329495 D 595495 CDS YP_005277916.1 378713023 11777067 2330015..2331982 1 NC_016902.1 PFAM: terminase GpA; KEGG: eoj:ECO26_0602 putative terminase large subunit; terminase GpA 2331982 11777067 EKO11_2242 Escherichia coli KO11FL terminase GpA YP_005277916.1 2330015 D 595495 CDS YP_005277917.1 378713024 11777068 2331936..2332142 1 NC_016902.1 PFAM: Head-to-tail joining protein W gpW family protein; KEGG: ssn:SSON_2429 putative head-tail joining protein of prophage; Head-to-tail joining protein W gpW family protein 2332142 11777068 EKO11_2243 Escherichia coli KO11FL Head-to-tail joining protein W gpW family protein YP_005277917.1 2331936 D 595495 CDS YP_005277918.1 378713025 11777069 2332139..2333740 1 NC_016902.1 KEGG: ssn:SSON_2428 putative capsid structural protein of prophage; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; phage portal protein, lambda family 2333740 11777069 EKO11_2244 Escherichia coli KO11FL phage portal protein, lambda family YP_005277918.1 2332139 D 595495 CDS YP_005277919.1 378713026 11777070 2333721..2335040 1 NC_016902.1 PFAM: peptidase S49; KEGG: eoh:ECO103_0541 putative head protein/prohead protease; peptidase S49 2335040 11777070 EKO11_2245 Escherichia coli KO11FL peptidase S49 YP_005277919.1 2333721 D 595495 CDS YP_005277920.1 378713027 11777071 2335050..2335382 1 NC_016902.1 PFAM: lambda head decoration protein D HDPD; KEGG: eoj:ECO26_2239 putative head-DNA stabilization protein; lambda head decoration protein D HDPD 2335382 11777071 EKO11_2246 Escherichia coli KO11FL lambda head decoration protein D HDPD YP_005277920.1 2335050 D 595495 CDS YP_005277921.1 378713028 11779528 2335438..2336463 1 NC_016902.1 KEGG: ebd:ECBD_2868 major capsid protein E; major capsid protein E 2336463 11779528 EKO11_2247 Escherichia coli KO11FL major capsid protein E YP_005277921.1 2335438 D 595495 CDS YP_005277922.1 378713029 11777072 2336505..2336903 1 NC_016902.1 KEGG: eoh:ECO103_0544 putative DNA packaging protein; putative DNA packaging protein 2336903 11777072 EKO11_2248 Escherichia coli KO11FL putative DNA packaging protein YP_005277922.1 2336505 D 595495 CDS YP_005277923.1 378713030 11777073 2336915..2337268 1 NC_016902.1 PFAM: head-tail attachment protein; KEGG: ssn:SSON_2423 putative head-tail joining protein of prophage; head-tail attachment protein 2337268 11777073 EKO11_2249 Escherichia coli KO11FL head-tail attachment protein YP_005277923.1 2336915 D 595495 CDS YP_005277924.1 378713031 11777074 2337280..2337858 1 NC_016902.1 PFAM: Prophage minor tail Z family protein; KEGG: ebd:ECBD_2865 prophage minor tail Z family protein; prophage minor tail Z family protein 2337858 11777074 EKO11_2250 Escherichia coli KO11FL prophage minor tail Z family protein YP_005277924.1 2337280 D 595495 CDS YP_005277925.1 378713032 11777075 2337855..2338250 1 NC_016902.1 PFAM: minor tail U; KEGG: ebd:ECBD_2864 minor tail U; minor tail family protein 2338250 11777075 EKO11_2251 Escherichia coli KO11FL minor tail family protein YP_005277925.1 2337855 D 595495 CDS YP_005277926.1 378713033 11777076 2338258..2338998 1 NC_016902.1 KEGG: ebd:ECBD_2863 Ig domain protein group 2 domain protein; PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; Ig domain-containing protein group 2 domain-containing protein 2338998 11777076 EKO11_2252 Escherichia coli KO11FL Ig domain-containing protein group 2 domain-containing protein YP_005277926.1 2338258 D 595495 CDS YP_005277927.1 378713034 11777077 2339014..2339436 1 NC_016902.1 KEGG: ebd:ECBD_2862 phage minor tail protein G; TIGRFAM: phage minor tail protein G; PFAM: minor tail protein G; phage minor tail protein G 2339436 11777077 EKO11_2253 Escherichia coli KO11FL phage minor tail protein G YP_005277927.1 2339014 D 595495 CDS YP_005277928.1 378713035 11777078 2339418..2339852 1 NC_016902.1 KEGG: ebd:ECBD_2861 phage tail assembly protein T; TIGRFAM: phage tail assembly protein T; PFAM: Minor tail T family protein; phage tail assembly protein T 2339852 11777078 EKO11_2254 Escherichia coli KO11FL phage tail assembly protein T YP_005277928.1 2339418 D 595495 CDS YP_005277929.1 378713036 11779529 2339845..2342406 1 NC_016902.1 KEGG: eoj:ECO26_0619 putative tail length tape measure protein; TIGRFAM: phage tail tape measure protein, lambda family; PFAM: Prophage tail length tape measure; phage tail tape measure protein, lambda family 2342406 11779529 EKO11_2255 Escherichia coli KO11FL phage tail tape measure protein, lambda family YP_005277929.1 2339845 D 595495 CDS YP_005277930.1 378713037 11777079 2342403..2342732 1 NC_016902.1 PFAM: minor tail family protein; KEGG: ebd:ECBD_2859 minor tail family protein; minor tail family protein 2342732 11777079 EKO11_2256 Escherichia coli KO11FL minor tail family protein YP_005277930.1 2342403 D 595495 CDS YP_005277931.1 378713038 11777080 2342732..2343430 1 NC_016902.1 KEGG: eok:G2583_1922 minor tail protein; TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; phage minor tail protein L 2343430 11777080 EKO11_2257 Escherichia coli KO11FL phage minor tail protein L YP_005277931.1 2342732 D 595495 CDS YP_005277932.1 378713039 11777081 2343436..2344179 1 NC_016902.1 PFAM: NLP/P60 protein; KEGG: eok:G2583_5225 putative tail fiber component K of prophage; NLP/P60 protein 2344179 11777081 EKO11_2258 Escherichia coli KO11FL NLP/P60 protein YP_005277932.1 2343436 D 595495 CDS YP_005277933.1 378713040 11777082 2344176..2344748 1 NC_016902.1 PFAM: lambda tail assembly I; KEGG: eoj:ECO26_3159 putative tail assembly protein; lambda tail assembly I 2344748 11777082 EKO11_2259 Escherichia coli KO11FL lambda tail assembly I YP_005277933.1 2344176 D 595495 CDS YP_005277934.1 378713041 11777083 2344809..2348222 1 NC_016902.1 KEGG: etw:ECSP_0861 putative tail component of prophage CP-933K; PFAM: protein of unknown function DUF1983; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; hypothetical protein 2348222 11777083 EKO11_2260 Escherichia coli KO11FL hypothetical protein YP_005277934.1 2344809 D 595495 CDS YP_005277935.1 378713042 11777084 2348293..2348892 1 NC_016902.1 PFAM: virulence-related outer membrane protein; KEGG: eok:G2583_5229 hypothetical protein; virulence-related outer membrane protein 2348892 11777084 EKO11_2261 Escherichia coli KO11FL virulence-related outer membrane protein YP_005277935.1 2348293 D 595495 CDS YP_005277936.1 378713043 11777085 2348957..2352031 1 NC_016902.1 PFAM: Prophage tail fibre domain protein; tail fiber repeat 2 protein; Tail Collar domain protein; KEGG: ssn:SSON_2410 phage protein-related; Prophage tail fiber domain protein 2352031 11777085 EKO11_2262 Escherichia coli KO11FL Prophage tail fiber domain protein YP_005277936.1 2348957 D 595495 CDS YP_005277937.1 378713044 11777086 2352031..2352606 1 NC_016902.1 PFAM: tail assembly chaperone gp38; KEGG: ebw:BWG_1365 Qin prophage; putative tail fibre assembly protein; tail assembly chaperone gp38 2352606 11777086 EKO11_2263 Escherichia coli KO11FL tail assembly chaperone gp38 YP_005277937.1 2352031 D 595495 CDS YP_005277938.1 378713045 11777087 complement(2352704..2353294) 1 NC_016902.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: ebw:BWG_1364 Qin prophage; putative site-specific recombinase; Resolvase domain-containing protein 2353294 11777087 EKO11_2264 Escherichia coli KO11FL Resolvase domain-containing protein YP_005277938.1 2352704 R 595495 CDS YP_005277939.1 378713046 11777088 complement(2353611..2353844) 1 NC_016902.1 KEGG: ebd:ECBD_2249 uncharacterized protein YdfK; hypothetical protein 2353844 11777088 EKO11_2265 Escherichia coli KO11FL hypothetical protein YP_005277939.1 2353611 R 595495 CDS YP_005277940.1 378713047 11777089 2354631..2355914 1 NC_016902.1 KEGG: ebd:ECBD_2096 metabolite/H+ symporter, major facilitator superfamily (MFS); TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1; metabolite/H+ symporter, major facilitator superfamily (MFS) 2355914 11777089 EKO11_2266 Escherichia coli KO11FL metabolite/H+ symporter, major facilitator superfamily (MFS) YP_005277940.1 2354631 D 595495 CDS YP_005277941.1 378713048 11777090 2356003..2357463 1 NC_016902.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfx:S1678 putative oxidoreductase; mannitol dehydrogenase domain-containing protein 2357463 11777090 EKO11_2267 Escherichia coli KO11FL mannitol dehydrogenase domain-containing protein YP_005277941.1 2356003 D 595495 CDS YP_005277942.1 378713049 11777091 complement(2357499..2357702) 1 NC_016902.1 TIGRFAM: selenium-binding protein YdfZ; KEGG: sdy:SDY_1584 hypothetical protein; selenium-binding protein YdfZ 2357702 11777091 EKO11_2268 Escherichia coli KO11FL selenium-binding protein YdfZ YP_005277942.1 2357499 R 595495 CDS YP_005277943.1 378713050 11779530 complement(2357880..2358566) 1 NC_016902.1 KEGG: ssn:SSON_1588 hypothetical protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2358566 11779530 EKO11_2269 Escherichia coli KO11FL GntR family transcriptional regulator YP_005277943.1 2357880 R 595495 CDS YP_005277944.1 378713051 11779531 complement(2358655..2359401) 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbo:SBO_1613 3-hydroxy acid dehydrogenase; short-chain dehydrogenase/reductase SDR 2359401 11779531 EKO11_2270 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005277944.1 2358655 R 595495 CDS YP_005277945.1 378713052 11777092 2359538..2361583 1 NC_016902.1 KEGG: ssn:SSON_1590 dipeptidyl carboxypeptidase II; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; peptidyl-dipeptidase Dcp 2361583 11777092 EKO11_2271 Escherichia coli KO11FL peptidyl-dipeptidase Dcp YP_005277945.1 2359538 D 595495 CDS YP_005277946.1 378713053 11777093 complement(2361628..2362146) 1 NC_016902.1 PFAM: CinA domain protein; KEGG: eoi:ECO111_1940 competence damage-inducible protein A; CinA domain-containing protein 2362146 11777093 EKO11_2272 Escherichia coli KO11FL CinA domain-containing protein YP_005277946.1 2361628 R 595495 CDS YP_005277947.1 378713054 11777094 2362422..2362814 1 NC_016902.1 PFAM: protein of unknown function DUF388, OB-fold; KEGG: ebw:BWG_1356 hypothetical protein; hypothetical protein 2362814 11777094 EKO11_2273 Escherichia coli KO11FL hypothetical protein YP_005277947.1 2362422 D 595495 CDS YP_005277948.1 378713055 11777095 2363069..2363959 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ebw:BWG_1355 hypothetical protein; SMART: GGDEF domain containing protein; diguanylate cyclase 2363959 11777095 EKO11_2274 Escherichia coli KO11FL diguanylate cyclase YP_005277948.1 2363069 D 595495 CDS YP_005277949.1 378713056 11779532 complement(2364178..2364273) 1 NC_016902.1 KEGG: ebd:ECBD_2105 hypothetical protein; hypothetical protein 2364273 11779532 EKO11_2275 Escherichia coli KO11FL hypothetical protein YP_005277949.1 2364178 R 595495 CDS YP_005277950.1 378713057 11777096 complement(2364400..2365587) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoj:ECO26_2142 putative MFS-type transporter YdeE; major facilitator superfamily protein 2365587 11777096 EKO11_2276 Escherichia coli KO11FL major facilitator superfamily protein YP_005277950.1 2364400 R 595495 CDS YP_005277951.1 378713058 11777097 2365782..2366681 1 NC_016902.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: eoi:ECO111_1936 O-acetylserine/cysteine export protein; hypothetical protein 2366681 11777097 EKO11_2277 Escherichia coli KO11FL hypothetical protein YP_005277951.1 2365782 D 595495 CDS YP_005277952.1 378713059 11777098 complement(2366726..2367424) 1 NC_016902.1 KEGG: eoh:ECO103_1670 putative transcriptional regulator; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2367424 11777098 EKO11_2278 Escherichia coli KO11FL GntR family transcriptional regulator YP_005277952.1 2366726 R 595495 CDS YP_005277953.1 378713060 11777099 2367623..2367934 1 NC_016902.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: eoh:ECO103_1669 putative PTS system component, lactose/cellobiose specific IIB protein; PTS system lactose/cellobiose-specific transporter subunit IIB 2367934 11777099 EKO11_2279 Escherichia coli KO11FL PTS system lactose/cellobiose-specific transporter subunit IIB YP_005277953.1 2367623 D 595495 CDS YP_005277954.1 378713061 11777100 2368049..2369371 1 NC_016902.1 TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; KEGG: eoi:ECO111_1933 putative PTS system, cellobiose-specific IIC component; PFAM: phosphotransferase system EIIC; PTS system lactose/cellobiose family transporter subunit IIC 2369371 11777100 EKO11_2280 Escherichia coli KO11FL PTS system lactose/cellobiose family transporter subunit IIC YP_005277954.1 2368049 D 595495 CDS YP_005277955.1 378713062 11777101 2369399..2369710 1 NC_016902.1 PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: eoh:ECO103_1666 putative PTS system component, lactose/cellobiose specific IIA protein; phosphotransferase system PTS lactose/cellobiose-specific IIA subunit 2369710 11777101 EKO11_2281 Escherichia coli KO11FL phosphotransferase system PTS lactose/cellobiose-specific IIA subunit YP_005277955.1 2369399 D 595495 CDS YP_005277956.1 378713063 11777102 2369766..2371439 1 NC_016902.1 PFAM: porin LamB type; KEGG: eoh:ECO103_1665 putative outer membrane protein; LamB type porin 2371439 11777102 EKO11_2282 Escherichia coli KO11FL LamB type porin YP_005277956.1 2369766 D 595495 CDS YP_005277957.1 378713064 11777103 2371464..2372903 1 NC_016902.1 PFAM: glycoside hydrolase family 1; KEGG: ssn:SSON_1595 6-phospho-beta-glucosidase; glycoside hydrolase 2372903 11777103 EKO11_2283 Escherichia coli KO11FL glycoside hydrolase YP_005277957.1 2371464 D 595495 CDS YP_005277958.1 378713065 11777104 complement(2372960..2373178) 1 NC_016902.1 KEGG: sbo:SBO_1650 hypothetical protein; hypothetical protein 2373178 11777104 EKO11_2284 Escherichia coli KO11FL hypothetical protein YP_005277958.1 2372960 R 595495 CDS YP_005277959.1 378713066 11777105 complement(2373210..2373593) 1 NC_016902.1 KEGG: sbc:SbBS512_E1674 DNA-binding transcriptional activator MarA; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2373593 11777105 EKO11_2285 Escherichia coli KO11FL AraC family transcriptional regulator YP_005277959.1 2373210 R 595495 CDS YP_005277960.1 378713067 11777106 complement(2373613..2374047) 1 NC_016902.1 KEGG: sdy:SDY_1597 DNA-binding transcriptional repressor MarR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 2374047 11777106 EKO11_2286 Escherichia coli KO11FL MarR family transcriptional regulator YP_005277960.1 2373613 R 595495 CDS YP_005277961.1 378713068 11777107 2374259..2374924 1 NC_016902.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: sdy:SDY_1598 multiple drug resistance protein MarC; multiple antibiotic resistance (MarC)-like protein 2374924 11777107 EKO11_2287 Escherichia coli KO11FL multiple antibiotic resistance (MarC)-like protein YP_005277961.1 2374259 D 595495 CDS YP_005277962.1 378713069 11777108 complement(2374949..2376139) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_1646 sugar efflux transporter; major facilitator superfamily protein 2376139 11777108 EKO11_2288 Escherichia coli KO11FL major facilitator superfamily protein YP_005277962.1 2374949 R 595495 CDS YP_005277963.1 378713070 11777110 complement(2377481..2378362) 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eoi:ECO111_1922 putative DNA-binding transcriptional regulator, LysR-type; LysR family transcriptional regulator 2378362 11777110 EKO11_2290 Escherichia coli KO11FL LysR family transcriptional regulator YP_005277963.1 2377481 R 595495 CDS YP_005277964.1 378713071 11777111 2378463..2379851 1 NC_016902.1 PFAM: Aldehyde Dehydrogenase; KEGG: sbc:SbBS512_E1681 putative succinate semialdehyde dehydrogenase; Aldehyde Dehydrogenase 2379851 11777111 EKO11_2291 Escherichia coli KO11FL Aldehyde Dehydrogenase YP_005277964.1 2378463 D 595495 CDS YP_005277965.1 378713072 11777112 2379915..2380841 1 NC_016902.1 TIGRFAM: Glutaminase, core; KEGG: sbc:SbBS512_E1682 glutaminase; PFAM: Glutaminase, core; glutaminase 2380841 11777112 EKO11_2292 Escherichia coli KO11FL glutaminase YP_005277965.1 2379915 D 595495 CDS YP_005277966.1 378713073 11779533 2380841..2381200 1 NC_016902.1 KEGG: sbc:SbBS512_E1683 hypothetical protein; hypothetical protein 2381200 11779533 EKO11_2293 Escherichia coli KO11FL hypothetical protein YP_005277966.1 2380841 D 595495 CDS YP_005277967.1 378713074 11779534 2381339..2382757 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ebd:ECBD_2120 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 2382757 11779534 EKO11_2294 Escherichia coli KO11FL diguanylate cyclase YP_005277967.1 2381339 D 595495 CDS YP_005277968.1 378713075 11777113 2382984..2384435 1 NC_016902.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfx:S1699 altronate oxidoreductase; mannitol dehydrogenase domain-containing protein 2384435 11777113 EKO11_2295 Escherichia coli KO11FL mannitol dehydrogenase domain-containing protein YP_005277968.1 2382984 D 595495 CDS YP_005277969.1 378713076 11777114 2384642..2385556 1 NC_016902.1 manually curated; KEGG: ebw:BWG_1339 conserved inner membrane protein; hypothetical protein 2385556 11777114 EKO11_2296 Escherichia coli KO11FL hypothetical protein YP_005277969.1 2384642 D 595495 CDS YP_005277970.1 378713077 11777115 complement(2385560..2386318) 1 NC_016902.1 KEGG: eoi:ECO111_1915 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 11; Trans-aconitate 2-methyltransferase 2386318 11777115 EKO11_2297 Escherichia coli KO11FL Trans-aconitate 2-methyltransferase YP_005277970.1 2385560 R 595495 CDS YP_005277971.1 378713078 11777116 complement(2386375..2386665) 1 NC_016902.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: eoh:ECO103_1648 autoinducer-2 (AI-2) modifying protein LsrG; antibiotic biosynthesis monooxygenase 2386665 11777116 EKO11_2298 Escherichia coli KO11FL antibiotic biosynthesis monooxygenase YP_005277971.1 2386375 R 595495 CDS YP_005277972.1 378713079 11779535 complement(2386689..2387564) 1 NC_016902.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: eok:G2583_1882 hypothetical protein; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 2387564 11779535 EKO11_2299 Escherichia coli KO11FL deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_005277972.1 2386689 R 595495 CDS YP_005277973.1 378713080 11777117 complement(2387591..2388613) 1 NC_016902.1 KEGG: eoh:ECO103_1646 AI2 transporter protein LsrB, periplasmic-binding component of ABC superfamily; AI2 transporter protein LsrB, periplasmic-binding component of ABC superfamily 2388613 11777117 EKO11_2300 Escherichia coli KO11FL AI2 transporter protein LsrB, periplasmic-binding component of ABC superfamily YP_005277973.1 2387591 R 595495 CDS YP_005277974.1 378713081 11777118 complement(2388625..2389617) 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: sfv:SFV_1570 putative transport system permease protein; inner-membrane translocator 2389617 11777118 EKO11_2301 Escherichia coli KO11FL inner-membrane translocator YP_005277974.1 2388625 R 595495 CDS YP_005277975.1 378713082 11777119 complement(2389617..2390645) 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: eoh:ECO103_1644 AI2 transporter protein LsrC, membrane component of ABC superfamily; inner-membrane translocator 2390645 11777119 EKO11_2302 Escherichia coli KO11FL inner-membrane translocator YP_005277975.1 2389617 R 595495 CDS YP_005277976.1 378713083 11777120 complement(2390639..2392174) 1 NC_016902.1 KEGG: eoh:ECO103_1643 fused AI2 transporter subunits of ABC superfamily: ATP-binding components; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2392174 11777120 EKO11_2303 Escherichia coli KO11FL ABC transporter YP_005277976.1 2390639 R 595495 CDS YP_005277977.1 378713084 11777121 2392423..2393376 1 NC_016902.1 PFAM: sugar-binding domain-containing protein; KEGG: eoh:ECO103_1642 putative DNA-binding transcriptional regulator; DeoR family transcriptional regulator 2393376 11777121 EKO11_2304 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005277977.1 2392423 D 595495 CDS YP_005277978.1 378713085 11777122 2393455..2395047 1 NC_016902.1 PFAM: Carbohydrate kinase, FGGY-like; KEGG: eoh:ECO103_1641 autoinducer-2 (AI-2) kinase; Carbohydrate kinase, FGGY-like protein 2395047 11777122 EKO11_2305 Escherichia coli KO11FL Carbohydrate kinase, FGGY-like protein YP_005277978.1 2393455 D 595495 CDS YP_005277979.1 378713086 11777123 2395578..2400998 1 NC_016902.1 KEGG: eoh:ECO103_1640 putative lipoprotein/autotransporter domain-containing protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin; outer membrane autotransporter barrel domain-containing protein 2400998 11777123 EKO11_2306 Escherichia coli KO11FL outer membrane autotransporter barrel domain-containing protein YP_005277979.1 2395578 D 595495 CDS YP_005277980.1 378713087 11777124 2401026..2401118 1 NC_016902.1 KEGG: ebd:ECBD_2129 hypothetical protein; hypothetical protein 2401118 11777124 EKO11_2307 Escherichia coli KO11FL hypothetical protein YP_005277980.1 2401026 D 595495 CDS YP_005277981.1 378713088 11777125 2401207..2401473 1 NC_016902.1 KEGG: eok:G2583_1873 transcriptional regulator HipB; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 2401473 11777125 EKO11_2308 Escherichia coli KO11FL helix-turn-helix domain-containing protein YP_005277981.1 2401207 D 595495 CDS YP_005277982.1 378713089 11777126 2401473..2402795 1 NC_016902.1 KEGG: eoi:ECO111_1899 regulator with HipB; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; HipA N-terminal domain-containing protein 2402795 11777126 EKO11_2309 Escherichia coli KO11FL HipA N-terminal domain-containing protein YP_005277982.1 2401473 D 595495 CDS YP_005277983.1 378713090 11777129 2403747..2404310 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eoi:ECO111_1897 putative type 1 fimbrial protein precursor; fimbrial protein domain-containing protein 2404310 11777129 EKO11_2312 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005277983.1 2403747 D 595495 CDS YP_005277984.1 378713091 11779536 2404671..2405381 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: eoi:ECO111_1896 putative fimbrial chaperone protein precursor; Pili assembly chaperone, N-terminal protein 2405381 11779536 EKO11_2313 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005277984.1 2404671 D 595495 CDS YP_005277985.1 378713092 11779537 2405423..2408074 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoj:ECO26_2103 outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 2408074 11779537 EKO11_2314 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005277985.1 2405423 D 595495 CDS YP_005277986.1 378713093 11777130 2408088..2408618 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eok:G2583_1867 biofilm-dependent modulation protein; fimbrial protein domain-containing protein 2408618 11777130 EKO11_2315 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005277986.1 2408088 D 595495 CDS YP_005277987.1 378713094 11777131 2408631..2409134 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eok:G2583_1866 hypothetical protein; fimbrial protein domain-containing protein 2409134 11777131 EKO11_2316 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005277987.1 2408631 D 595495 CDS YP_005277988.1 378713095 11779538 2409194..2410108 1 NC_016902.1 PFAM: FimH mannose-binding protein; Fimbrial protein domain-containing protein; KEGG: ssn:SSON_1621 putative adhesin; FimH mannose-binding protein 2410108 11779538 EKO11_2317 Escherichia coli KO11FL FimH mannose-binding protein YP_005277988.1 2409194 D 595495 CDS YP_005277989.1 378713096 11779539 2410442..2412721 1 NC_016902.1 KEGG: eoh:ECO103_1628 putative oxidoreductase; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 2412721 11779539 EKO11_2318 Escherichia coli KO11FL oxidoreductase alpha (molybdopterin) subunit YP_005277989.1 2410442 D 595495 CDS YP_005277990.1 378713097 11777132 2412969..2413166 1 NC_016902.1 KEGG: sbo:SBO_1556 hypothetical protein; hypothetical protein 2413166 11777132 EKO11_2319 Escherichia coli KO11FL hypothetical protein YP_005277990.1 2412969 D 595495 CDS YP_005277991.1 378713098 11777133 2413241..2414002 1 NC_016902.1 KEGG: sbc:SbBS512_E1762 transcriptional regulator YdeO; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2414002 11777133 EKO11_2320 Escherichia coli KO11FL AraC family transcriptional regulator YP_005277991.1 2413241 D 595495 CDS YP_005277992.1 378713099 11777134 2414404..2416086 1 NC_016902.1 PFAM: sulfatase; KEGG: eoh:ECO103_1625 hypothetical protein; sulfatase 2416086 11777134 EKO11_2321 Escherichia coli KO11FL sulfatase YP_005277992.1 2414404 D 595495 CDS YP_005277993.1 378713100 11777135 2416138..2417295 1 NC_016902.1 PFAM: Radical SAM domain protein; KEGG: eoh:ECO103_1624 hypothetical protein; radical SAM protein 2417295 11777135 EKO11_2322 Escherichia coli KO11FL radical SAM protein YP_005277993.1 2416138 D 595495 CDS YP_005277994.1 378713101 11777136 2417586..2419271 1 NC_016902.1 manually curated; PFAM: ABC transporter related; ABC transporter domain-containing protein; KEGG: eoh:ECO103_1623 fused putative multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component; SMART: AAA ATPase; ABC transporter 2419271 11777136 EKO11_2323 Escherichia coli KO11FL ABC transporter YP_005277994.1 2417586 D 595495 CDS YP_005277995.1 378713102 11777137 2419309..2421681 1 NC_016902.1 PFAM: TonB-dependent receptor plug; KEGG: ebw:BWG_1316 putative porin protein; TonB-dependent receptor plug 2421681 11777137 EKO11_2324 Escherichia coli KO11FL TonB-dependent receptor plug YP_005277995.1 2419309 D 595495 CDS YP_005277996.1 378713103 11777138 2421738..2424521 1 NC_016902.1 PFAM: peptidase M16 domain protein; KEGG: eoi:ECO111_1884 putative peptidase; peptidase M16 domain-containing protein 2424521 11777138 EKO11_2325 Escherichia coli KO11FL peptidase M16 domain-containing protein YP_005277996.1 2421738 D 595495 CDS YP_005277997.1 378713104 11777139 2424883..2426283 1 NC_016902.1 TIGRFAM: glutamate decarboxylase; KEGG: sbo:SBO_1563 glutamate decarboxylase isozyme; PFAM: Pyridoxal-dependent decarboxylase; glutamate decarboxylase 2426283 11777139 EKO11_2326 Escherichia coli KO11FL glutamate decarboxylase YP_005277997.1 2424883 D 595495 CDS YP_005277998.1 378713105 11777141 2426439..2427974 1 NC_016902.1 KEGG: sbc:SbBS512_E1755 glutamate:gamma aminobutyrate antiporter; TIGRFAM: glutamate/g-aminobutyrate antiporter; PFAM: amino acid permease-associated region; glutamate/g-aminobutyrate antiporter 2427974 11777141 EKO11_2328 Escherichia coli KO11FL glutamate/g-aminobutyrate antiporter YP_005277998.1 2426439 D 595495 CDS YP_005277999.1 378713106 11777142 2428105..2429424 1 NC_016902.1 PFAM: protein of unknown function DUF187; KEGG: ssn:SSON_1633 hypothetical protein; hypothetical protein 2429424 11777142 EKO11_2329 Escherichia coli KO11FL hypothetical protein YP_005277999.1 2428105 D 595495 CDS YP_005278000.1 378713107 11777143 2429796..2431178 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ebd:ECBD_2149 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 2431178 11777143 EKO11_2330 Escherichia coli KO11FL diguanylate cyclase YP_005278000.1 2429796 D 595495 CDS YP_005278001.1 378713108 11777144 2431203..2433602 1 NC_016902.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: eok:G2583_1852 FOG: PAS/PAC domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2433602 11777144 EKO11_2331 Escherichia coli KO11FL PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_005278001.1 2431203 D 595495 CDS YP_005278002.1 378713109 11777145 2433860..2434441 1 NC_016902.1 KEGG: ssn:SSON_1636 D-alanyl-D-alanine dipeptidase; PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; D-Ala-D-Ala dipeptidase 2434441 11777145 EKO11_2332 Escherichia coli KO11FL D-Ala-D-Ala dipeptidase YP_005278002.1 2433860 D 595495 CDS YP_005278003.1 378713110 11779540 2434455..2436005 1 NC_016902.1 PFAM: extracellular solute-binding protein family 5; KEGG: eoi:ECO111_1877 D-ala-D-ala transporter subunit DdpA; family 5 extracellular solute-binding protein 2436005 11779540 EKO11_2333 Escherichia coli KO11FL family 5 extracellular solute-binding protein YP_005278003.1 2434455 D 595495 CDS YP_005278004.1 378713111 11777146 2436007..2437029 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ebw:BWG_1307 D-ala-D-ala transporter subunit; binding-protein-dependent transport system inner membrane protein 2437029 11777146 EKO11_2334 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278004.1 2436007 D 595495 CDS YP_005278005.1 378713112 11777147 2437026..2437922 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ebd:ECBD_2154 ATP-dependent peptide transporter membrane subunit; binding-protein-dependent transport system inner membrane protein 2437922 11777147 EKO11_2335 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278005.1 2437026 D 595495 CDS YP_005278006.1 378713113 11777148 2437919..2438905 1 NC_016902.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: eok:G2583_1847 ABC transporter ATP-binding protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2438905 11777148 EKO11_2336 Escherichia coli KO11FL oligopeptide/dipeptide ABC transporter ATPase YP_005278006.1 2437919 D 595495 CDS YP_005278007.1 378713114 11777149 2438898..2439824 1 NC_016902.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: eoi:ECO111_1873 D-ala-D-ala transporter subunit DdpF; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2439824 11777149 EKO11_2337 Escherichia coli KO11FL oligopeptide/dipeptide ABC transporter ATPase YP_005278007.1 2438898 D 595495 CDS YP_005278008.1 378713115 11777150 complement(2439880..2440311) 1 NC_016902.1 TIGRFAM: peroxiredoxin, OsmC subfamily; KEGG: sfv:SFV_1739 osmotically inducible protein; PFAM: OsmC family protein; OsmC subfamily peroxiredoxin 2440311 11777150 EKO11_2338 Escherichia coli KO11FL OsmC subfamily peroxiredoxin YP_005278008.1 2439880 R 595495 CDS YP_005278009.1 378713116 11777151 2440594..2440872 1 NC_016902.1 KEGG: sbc:SbBS512_E1744 biofilm-dependent modulation protein; manually curated; PFAM: Biofilm-dependent modulation protein Bdm, putative; Biofilm-dependent modulation protein Bdm, putative 2440872 11777151 EKO11_2339 Escherichia coli KO11FL Biofilm-dependent modulation protein Bdm, putative YP_005278009.1 2440594 D 595495 CDS YP_005278010.1 378713117 11777152 2440974..2441111 1 NC_016902.1 PFAM: 30S ribosomal subunit S22; KEGG: sbc:SbBS512_E1743 30S ribosomal subunit S22; 30S ribosomal subunit S22 2441111 11777152 EKO11_2340 Escherichia coli KO11FL 30S ribosomal subunit S22 YP_005278010.1 2440974 D 595495 CDS YP_005278011.1 378713118 11777153 2441268..2442965 1 NC_016902.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: sfv:SFV_1742 malate dehydrogenase; malic protein NAD-binding protein 2442965 11777153 EKO11_2341 Escherichia coli KO11FL malic protein NAD-binding protein YP_005278011.1 2441268 D 595495 CDS YP_005278012.1 378713119 11777154 2443099..2444109 1 NC_016902.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eok:G2583_1841 Zn-dependent alcohol dehydrogenase; alcohol dehydrogenase 2444109 11777154 EKO11_2342 Escherichia coli KO11FL alcohol dehydrogenase YP_005278012.1 2443099 D 595495 CDS YP_005278013.1 378713120 11777155 2444256..2444540 1 NC_016902.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E1740 addiction module antidote protein, HigA family; SMART: helix-turn-helix domain protein; plasmid maintenance system antidote protein 2444540 11777155 EKO11_2343 Escherichia coli KO11FL plasmid maintenance system antidote protein YP_005278013.1 2444256 D 595495 CDS YP_005278014.1 378713121 11777156 complement(2444591..2445244) 1 NC_016902.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sbc:SbBS512_E1739 formate dehydrogenase-N subunit gamma; formate dehydrogenase subunit gamma 2445244 11777156 EKO11_2344 Escherichia coli KO11FL formate dehydrogenase subunit gamma YP_005278014.1 2444591 R 595495 CDS YP_005278015.1 378713122 11777157 complement(2445237..2446121) 1 NC_016902.1 KEGG: sbo:SBO_1582 formate dehydrogenase N, nitrate-inducible, iron-sulfur beta subunit; TIGRFAM: formate dehydrogenase, beta subunit; PFAM: Formate dehydrogenase transmembrane domain protein; formate dehydrogenase subunit beta 2446121 11777157 EKO11_2345 Escherichia coli KO11FL formate dehydrogenase subunit beta YP_005278015.1 2445237 R 595495 CDS YP_005278016.1 378713123 11777158 complement(2446134..2448545) 1 NC_016902.1 TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: ssn:SSON_1650 formate dehydrogenase-N, nitrate-inducible, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 2448545 11777158 EKO11_2346 Escherichia coli KO11FL formate dehydrogenase subunit alpha YP_005278016.1 2446134 R 595495 CDS YP_005278017.1 378713124 11777159 complement(2448594..2449181) 1 NC_016902.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: sbo:SBO_1583 formate dehydrogenase N, nitrate-inducible, alpha subunit; molybdopterin oxidoreductase Fe4S4 region 2449181 11777159 EKO11_2347 Escherichia coli KO11FL molybdopterin oxidoreductase Fe4S4 region YP_005278017.1 2448594 R 595495 CDS YP_005278018.1 378713125 11777160 2449413..2450294 1 NC_016902.1 KEGG: eok:G2583_1836 hypothetical protein; manually curated; PFAM: protein of unknown function DUF6 transmembrane; hypothetical protein 2450294 11777160 EKO11_2348 Escherichia coli KO11FL hypothetical protein YP_005278018.1 2449413 D 595495 CDS YP_005278019.1 378713126 11777161 2450553..2450843 1 NC_016902.1 PFAM: porin Gram-negative type; KEGG: sbo:SBO_1585 putative outer membrane porin protein; porin 2450843 11777161 EKO11_2349 Escherichia coli KO11FL porin YP_005278019.1 2450553 D 595495 CDS YP_005278020.1 378713127 11777162 2450902..2452197 1 NC_016902.1 KEGG: eoi:ECO111_1861 T3SS effector-like protein EspR-homolog; leucine-rich repeat protein 2452197 11777162 EKO11_2350 Escherichia coli KO11FL leucine-rich repeat protein YP_005278020.1 2450902 D 595495 CDS YP_005278021.1 378713128 11777163 2452521..2453909 1 NC_016902.1 KEGG: eoi:ECO111_1860 nitrate/nitrite transporter NarU; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; nitrite transporter 2453909 11777163 EKO11_2351 Escherichia coli KO11FL nitrite transporter YP_005278021.1 2452521 D 595495 CDS YP_005278022.1 378713129 11777164 2453991..2457731 1 NC_016902.1 TIGRFAM: nitrate reductase, alpha subunit; KEGG: eoh:ECO103_1598 nitrate reductase 2, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 2457731 11777164 EKO11_2352 Escherichia coli KO11FL nitrate reductase subunit alpha YP_005278022.1 2453991 D 595495 CDS YP_005278023.1 378713130 11777165 2457728..2459272 1 NC_016902.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: eoi:ECO111_1858 nitrate reductase 2, beta subunit; nitrate reductase subunit beta 2459272 11777165 EKO11_2353 Escherichia coli KO11FL nitrate reductase subunit beta YP_005278023.1 2457728 D 595495 CDS YP_005278024.1 378713131 11777166 2459272..2459967 1 NC_016902.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; KEGG: ssn:SSON_1659 cryptic nitrate reductase 2, delta subunit, assembly function; PFAM: TorD-like chaperone; nitrate reductase molybdenum cofactor assembly chaperone 2459967 11777166 EKO11_2354 Escherichia coli KO11FL nitrate reductase molybdenum cofactor assembly chaperone YP_005278024.1 2459272 D 595495 CDS YP_005278025.1 378713132 11777167 2459964..2460644 1 NC_016902.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; KEGG: sdy:SDY_1653 cryptic nitrate reductase 2, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 2460644 11777167 EKO11_2355 Escherichia coli KO11FL respiratory nitrate reductase subunit gamma YP_005278025.1 2459964 D 595495 CDS YP_005278026.1 378713133 11779541 2460723..2461616 1 NC_016902.1 KEGG: eoh:ECO103_1594 hypothetical protein; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; phenazine biosynthesis protein PhzF family protein 2461616 11779541 EKO11_2356 Escherichia coli KO11FL phenazine biosynthesis protein PhzF family protein YP_005278026.1 2460723 D 595495 CDS YP_005278027.1 378713134 11777168 complement(2461712..2462557) 1 NC_016902.1 KEGG: eoi:ECO111_1854 N-hydroxyarylamine O-acetyltransferase; PFAM: N-acetyltransferase; N-hydroxyarylamine O-acetyltransferase 2462557 11777168 EKO11_2357 Escherichia coli KO11FL N-hydroxyarylamine O-acetyltransferase YP_005278027.1 2461712 R 595495 CDS YP_005278028.1 378713135 11777169 2462730..2463299 1 NC_016902.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: ebd:ECBD_2176 flavin reductase domain protein FMN-binding; flavin reductase domain-containing FMN-binding protein 2463299 11777169 EKO11_2358 Escherichia coli KO11FL flavin reductase domain-containing FMN-binding protein YP_005278028.1 2462730 D 595495 CDS YP_005278029.1 378713136 11777170 complement(2463303..2463530) 1 NC_016902.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: ebd:ECBD_2177 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 2463530 11777170 EKO11_2359 Escherichia coli KO11FL 4-oxalocrotonate tautomerase YP_005278029.1 2463303 R 595495 CDS YP_005278030.1 378713137 11779542 complement(2465273..2465668) 1 NC_016902.1 KEGG: eok:G2583_1820 DsORF-e4; hypothetical protein 2465668 11779542 EKO11_2361 Escherichia coli KO11FL hypothetical protein YP_005278030.1 2465273 R 595495 CDS YP_005278031.1 378713138 11777172 complement(2465680..2469888) 1 NC_016902.1 KEGG: eoi:ECO111_1849 RhsE core protein with extension; TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein 2469888 11777172 EKO11_2362 Escherichia coli KO11FL YD repeat protein YP_005278031.1 2465680 R 595495 CDS YP_005278032.1 378713139 11777173 complement(2469956..2472064) 1 NC_016902.1 TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; KEGG: ssn:SSON_1677 rhs element protein; ImpA family type VI secretion-associated protein 2472064 11777173 EKO11_2363 Escherichia coli KO11FL ImpA family type VI secretion-associated protein YP_005278032.1 2469956 R 595495 CDS YP_005278033.1 378713140 11777174 complement(2472881..2473093) 1 NC_016902.1 KEGG: eoi:ECO111_1847 hypothetical protein; hypothetical protein 2473093 11777174 EKO11_2364 Escherichia coli KO11FL hypothetical protein YP_005278033.1 2472881 R 595495 CDS YP_005278034.1 378713141 11777175 complement(2473169..2473786) 1 NC_016902.1 KEGG: eoi:ECO111_1846 putative enzyme; putative enzyme 2473786 11777175 EKO11_2365 Escherichia coli KO11FL putative enzyme YP_005278034.1 2473169 R 595495 CDS YP_005278035.1 378713142 11777176 2474052..2475551 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: ebd:ECBD_2186 amino acid permease-associated region; amino acid permease 2475551 11777176 EKO11_2366 Escherichia coli KO11FL amino acid permease YP_005278035.1 2474052 D 595495 CDS YP_005278036.1 378713143 11777177 complement(2475666..2476727) 1 NC_016902.1 KEGG: sbc:SbBS512_E1724 hypothetical protein; hypothetical protein 2476727 11777177 EKO11_2367 Escherichia coli KO11FL hypothetical protein YP_005278036.1 2475666 R 595495 CDS YP_005278037.1 378713144 11779543 2476969..2479071 1 NC_016902.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbo:SBO_1596 putative outer membrane receptor for iron transport; TonB-dependent receptor 2479071 11779543 EKO11_2368 Escherichia coli KO11FL TonB-dependent receptor YP_005278037.1 2476969 D 595495 CDS YP_005278038.1 378713145 11777178 complement(2479107..2479772) 1 NC_016902.1 KEGG: ebw:BWG_1276 putative DNA-binding transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2479772 11777178 EKO11_2369 Escherichia coli KO11FL GntR family transcriptional regulator YP_005278038.1 2479107 R 595495 CDS YP_005278039.1 378713146 11777179 complement(2479970..2481007) 1 NC_016902.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: eoh:ECO103_1580 putative oxidoreductase, Zn-dependent and NAD(P)-binding; alcohol dehydrogenase 2481007 11777179 EKO11_2370 Escherichia coli KO11FL alcohol dehydrogenase YP_005278039.1 2479970 R 595495 CDS YP_005278040.1 378713147 11777180 2481188..2481706 1 NC_016902.1 KEGG: ssn:SSON_1688 putative resistance protein; PFAM: GCN5-related N-acetyltransferase; phosphinothricin acetyltransferase 2481706 11777180 EKO11_2371 Escherichia coli KO11FL phosphinothricin acetyltransferase YP_005278040.1 2481188 D 595495 CDS YP_005278041.1 378713148 11777181 2481703..2482152 1 NC_016902.1 PFAM: protein of unknown function DUF606; KEGG: sbo:SBO_1601 hypothetical protein; hypothetical protein 2482152 11777181 EKO11_2372 Escherichia coli KO11FL hypothetical protein YP_005278041.1 2481703 D 595495 CDS YP_005278042.1 378713149 11779544 complement(2482153..2482386) 1 NC_016902.1 PFAM: Protein of unknown function DUF2526; KEGG: sbc:SbBS512_E1716 hypothetical protein; hypothetical protein 2482386 11779544 EKO11_2373 Escherichia coli KO11FL hypothetical protein YP_005278042.1 2482153 R 595495 CDS YP_005278043.1 378713150 11777182 complement(2482472..2482720) 1 NC_016902.1 KEGG: sdy:SDY_1729 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2566; hypothetical protein 2482720 11777182 EKO11_2374 Escherichia coli KO11FL hypothetical protein YP_005278043.1 2482472 R 595495 CDS YP_005278044.1 378713151 11777183 complement(2483032..2484456) 1 NC_016902.1 KEGG: eok:G2583_1805 gamma-aminobutyraldehyde dehydrogenase; TIGRFAM: 1-pyrroline dehydrogenase; PFAM: Aldehyde Dehydrogenase; 1-pyrroline dehydrogenase 2484456 11777183 EKO11_2375 Escherichia coli KO11FL 1-pyrroline dehydrogenase YP_005278044.1 2483032 R 595495 CDS YP_005278045.1 378713152 11777184 complement(2484478..2485272) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eoi:ECO111_1832 putative spermidine/putrescine transporter subunit; binding-protein-dependent transport system inner membrane protein 2485272 11777184 EKO11_2376 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278045.1 2484478 R 595495 CDS YP_005278046.1 378713153 11777185 complement(2485262..2486203) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eok:G2583_1803 ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein 2486203 11777185 EKO11_2377 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278046.1 2485262 R 595495 CDS YP_005278047.1 378713154 11777186 complement(2486204..2487217) 1 NC_016902.1 KEGG: ebd:ECBD_2198 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 2487217 11777186 EKO11_2378 Escherichia coli KO11FL ABC transporter YP_005278047.1 2486204 R 595495 CDS YP_005278048.1 378713155 11777187 complement(2487235..2488380) 1 NC_016902.1 PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_1697 putative transport protein; extracellular solute-binding protein 2488380 11777187 EKO11_2379 Escherichia coli KO11FL extracellular solute-binding protein YP_005278048.1 2487235 R 595495 CDS YP_005278049.1 378713156 11777188 complement(2488625..2490031) 1 NC_016902.1 KEGG: eoh:ECO103_1569 fused putative DNA-binding transcriptional regulator/putative amino transferase; PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; DeoR family transcriptional regulator 2490031 11777188 EKO11_2380 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005278049.1 2488625 R 595495 CDS YP_005278050.1 378713157 11777189 complement(2490110..2490547) 1 NC_016902.1 KEGG: ebd:ECBD_2201 transcriptional regulator, XRE family; PFAM: Uncharacterised protein family UPF0150; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; transcriptional regulator, XRE family 2490547 11777189 EKO11_2381 Escherichia coli KO11FL transcriptional regulator, XRE family YP_005278050.1 2490110 R 595495 CDS YP_005278051.1 378713158 11777190 complement(2490572..2490748) 1 NC_016902.1 PFAM: YcfA family protein; KEGG: ebd:ECBD_2202 YcfA family protein; hypothetical protein 2490748 11777190 EKO11_2382 Escherichia coli KO11FL hypothetical protein YP_005278051.1 2490572 R 595495 CDS YP_005278052.1 378713159 11779545 2490970..2491200 1 NC_016902.1 manually curated; KEGG: ssn:SSON_1702 hypothetical protein; hypothetical protein 2491200 11779545 EKO11_2383 Escherichia coli KO11FL hypothetical protein YP_005278052.1 2490970 D 595495 CDS YP_005278053.1 378713160 11779546 complement(2491292..2493295) 1 NC_016902.1 KEGG: eok:G2583_1796 peptidase, U32 family; manually curated; PFAM: peptidase U32; peptidase U32 2493295 11779546 EKO11_2384 Escherichia coli KO11FL peptidase U32 YP_005278053.1 2491292 R 595495 CDS YP_005278054.1 378713161 11777191 complement(2493326..2493862) 1 NC_016902.1 KEGG: ebd:ECBD_2205 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; transcriptional regulator, XRE family 2493862 11777191 EKO11_2385 Escherichia coli KO11FL transcriptional regulator, XRE family YP_005278054.1 2493326 R 595495 CDS YP_005278055.1 378713162 11777192 2493954..2495129 1 NC_016902.1 KEGG: ebd:ECBD_2206 benzoate transporter; TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; benzoate transporter 2495129 11777192 EKO11_2386 Escherichia coli KO11FL benzoate transporter YP_005278055.1 2493954 D 595495 CDS YP_005278056.1 378713163 11777193 complement(2495169..2496317) 1 NC_016902.1 KEGG: ssn:SSON_1709 putative virulence protein; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; transposase, IS605 OrfB family 2496317 11777193 EKO11_2387 Escherichia coli KO11FL transposase, IS605 OrfB family YP_005278056.1 2495169 R 595495 CDS YP_005278057.1 378713164 11777195 complement(2496904..2497572) 1 NC_016902.1 KEGG: ebd:ECBD_2209 uncharacterized lipoprotein YdcL; lipoprotein YdcL 2497572 11777195 EKO11_2389 Escherichia coli KO11FL lipoprotein YdcL YP_005278057.1 2496904 R 595495 CDS YP_005278058.1 378713165 11777196 complement(2497875..2498468) 1 NC_016902.1 TIGRFAM: tellurite resistance protein TehB; KEGG: sdy:SDY_1747 tellurite resistance protein TehB; tellurite resistance protein TehB 2498468 11777196 EKO11_2390 Escherichia coli KO11FL tellurite resistance protein TehB YP_005278058.1 2497875 R 595495 CDS YP_005278059.1 378713166 11777197 complement(2498465..2499457) 1 NC_016902.1 KEGG: ssn:SSON_1713 potassium-tellurite ethidium and proflavin transporter; TIGRFAM: C4-dicarboxylate transporter/malic acid transport protein; PFAM: C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 2499457 11777197 EKO11_2391 Escherichia coli KO11FL C4-dicarboxylate transporter/malic acid transport protein YP_005278059.1 2498465 R 595495 CDS YP_005278060.1 378713167 11777198 2499581..2500561 1 NC_016902.1 KEGG: eoj:ECO26_2026 putative enzyme; putative enzyme 2500561 11777198 EKO11_2392 Escherichia coli KO11FL putative enzyme YP_005278060.1 2499581 D 595495 CDS YP_005278061.1 378713168 11777199 complement(2500556..2501092) 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eoi:ECO111_1816 ribosomal-protein-L7/L12-serine acetyltransferase; N-acetyltransferase GCN5 2501092 11777199 EKO11_2393 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005278061.1 2500556 R 595495 CDS YP_005278062.1 378713169 11777200 complement(2501155..2501379) 1 NC_016902.1 PFAM: protein of unknown function DUF465; KEGG: sfv:SFV_1780 hypothetical protein; hypothetical protein 2501379 11777200 EKO11_2394 Escherichia coli KO11FL hypothetical protein YP_005278062.1 2501155 R 595495 CDS YP_005278063.1 378713170 11779547 complement(2501519..2503174) 1 NC_016902.1 KEGG: sbo:SBO_1663 glucan biosynthesis protein D; manually curated; PFAM: periplasmic glucan biosynthesis protein MdoG; periplasmic glucan biosynthesis protein MdoG 2503174 11779547 EKO11_2395 Escherichia coli KO11FL periplasmic glucan biosynthesis protein MdoG YP_005278063.1 2501519 R 595495 CDS YP_005278064.1 378713171 11779548 complement(2503400..2504743) 1 NC_016902.1 PFAM: protein of unknown function DUF1338; KEGG: ssn:SSON_1719 hypothetical protein; hypothetical protein 2504743 11779548 EKO11_2396 Escherichia coli KO11FL hypothetical protein YP_005278064.1 2503400 R 595495 CDS YP_005278065.1 378713172 11777201 2504960..2505883 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_1720 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2505883 11777201 EKO11_2397 Escherichia coli KO11FL LysR family transcriptional regulator YP_005278065.1 2504960 D 595495 CDS YP_005278066.1 378713173 11777202 complement(2505921..2507561) 1 NC_016902.1 KEGG: eoj:ECO26_2020 methyl-accepting chemotaxis protein III, riboseand galactose sensor receptor; PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 2507561 11777202 EKO11_2398 Escherichia coli KO11FL methyl-accepting chemotaxis sensory transducer YP_005278066.1 2505921 R 595495 CDS YP_005278067.1 378713174 11777203 2507902..2508069 1 NC_016902.1 KEGG: ebd:ECBD_2219 hypothetical protein; hypothetical protein 2508069 11777203 EKO11_2399 Escherichia coli KO11FL hypothetical protein YP_005278067.1 2507902 D 595495 CDS YP_005278068.1 378713175 11777204 complement(2508181..2508354) 1 NC_016902.1 KEGG: sbc:SbBS512_E1643 hypothetical protein; hypothetical protein 2508354 11777204 EKO11_2400 Escherichia coli KO11FL hypothetical protein YP_005278068.1 2508181 R 595495 CDS YP_005278069.1 378713176 11777205 complement(2508599..2509129) 1 NC_016902.1 KEGG: eoh:ECO103_1549 cytochrome b561; cytochrome b561 2509129 11777205 EKO11_2401 Escherichia coli KO11FL cytochrome b561 YP_005278069.1 2508599 R 595495 CDS YP_005278070.1 378713177 11777206 2509318..2510319 1 NC_016902.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ssn:SSON_1725 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type I 2510319 11777206 EKO11_2402 Escherichia coli KO11FL glyceraldehyde-3-phosphate dehydrogenase, type I YP_005278070.1 2509318 D 595495 CDS YP_005278071.1 378713178 11777207 complement(2510361..2511800) 1 NC_016902.1 PFAM: Aldehyde Dehydrogenase; KEGG: eok:G2583_1777 aldehyde dehydrogenase A; Aldehyde Dehydrogenase 2511800 11777207 EKO11_2403 Escherichia coli KO11FL Aldehyde Dehydrogenase YP_005278071.1 2510361 R 595495 CDS YP_005278072.1 378713179 11777208 complement(2511997..2512797) 1 NC_016902.1 PFAM: protein of unknown function DUF218; KEGG: ebd:ECBD_2226 protein of unknown function DUF218; hypothetical protein 2512797 11777208 EKO11_2404 Escherichia coli KO11FL hypothetical protein YP_005278072.1 2511997 R 595495 CDS YP_005278073.1 378713180 11777209 complement(2513069..2516971) 1 NC_016902.1 TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; helicase domain protein; protein of unknown function DUF1605; KEGG: eok:G2583_1771 HrpA-like helicase; SMART: DEAD-like helicase ; AAA ATPase; helicase domain protein; ATP-dependent helicase HrpA 2516971 11777209 EKO11_2405 Escherichia coli KO11FL ATP-dependent helicase HrpA YP_005278073.1 2513069 R 595495 CDS YP_005278074.1 378713181 11779549 2517172..2517777 1 NC_016902.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sbc:SbBS512_E1632 azoreductase; NAD(P)H dehydrogenase (quinone) 2517777 11779549 EKO11_2406 Escherichia coli KO11FL NAD(P)H dehydrogenase (quinone) YP_005278074.1 2517172 D 595495 CDS YP_005278075.1 378713182 11777210 complement(2517828..2519144) 1 NC_016902.1 KEGG: ebd:ECBD_2229 putative dual specificity phosphatase; PFAM: Dual specificity protein phosphatase; phosphoesterase PA-phosphatase related; SMART: Dual specificity phosphatase, subgroup, catalytic domain; Protein-tyrosine phosphatase, catalytic; putative dual specificity phosphatase 2519144 11777210 EKO11_2407 Escherichia coli KO11FL putative dual specificity phosphatase YP_005278075.1 2517828 R 595495 CDS YP_005278076.1 378713183 11777211 complement(2519134..2520891) 1 NC_016902.1 PFAM: alpha/beta hydrolase fold; KEGG: eoh:ECO103_1542 putative hydrolase; alpha/beta hydrolase fold protein 2520891 11777211 EKO11_2408 Escherichia coli KO11FL alpha/beta hydrolase fold protein YP_005278076.1 2519134 R 595495 CDS YP_005278077.1 378713184 11777212 complement(2520907..2521803) 1 NC_016902.1 PFAM: phosphatidate cytidylyltransferase; KEGG: eoi:ECO111_1798 putative CDP-diglyceride synthase; phosphatidate cytidylyltransferase 2521803 11777212 EKO11_2409 Escherichia coli KO11FL phosphatidate cytidylyltransferase YP_005278077.1 2520907 R 595495 CDS YP_005278078.1 378713185 11777213 complement(2521803..2522408) 1 NC_016902.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: eoh:ECO103_1540 putative inner membrane protein; CDP-alcohol phosphatidyltransferase 2522408 11777213 EKO11_2410 Escherichia coli KO11FL CDP-alcohol phosphatidyltransferase YP_005278078.1 2521803 R 595495 CDS YP_005278079.1 378713186 11779550 complement(2522579..2524885) 1 NC_016902.1 KEGG: eoh:ECO103_1539 hypothetical protein; hypothetical protein 2524885 11779550 EKO11_2411 Escherichia coli KO11FL hypothetical protein YP_005278079.1 2522579 R 595495 CDS YP_005278080.1 378713187 11777214 complement(2524949..2525809) 1 NC_016902.1 PFAM: aldo/keto reductase; KEGG: eoh:ECO103_1538 putative oxidoreductase; aldo/keto reductase 2525809 11777214 EKO11_2412 Escherichia coli KO11FL aldo/keto reductase YP_005278080.1 2524949 R 595495 CDS YP_005278081.1 378713188 11779551 complement(2526040..2526630) 1 NC_016902.1 KEGG: eoj:ECO26_2004 putative hexapeptide repeat acetyltransferase; TIGRFAM: phenylacetic acid degradation protein PaaY; PFAM: transferase hexapeptide repeat containing protein; phenylacetic acid degradation protein PaaY 2526630 11779551 EKO11_2413 Escherichia coli KO11FL phenylacetic acid degradation protein PaaY YP_005278081.1 2526040 R 595495 CDS YP_005278082.1 378713189 11779552 complement(2526612..2527562) 1 NC_016902.1 KEGG: eoi:ECO111_1793 transcriptional repressor for phenylacetic acid degradation; TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein domain; PaaX domain protein; PaaX family transcriptional regulator 2527562 11779552 EKO11_2414 Escherichia coli KO11FL PaaX family transcriptional regulator YP_005278082.1 2526612 R 595495 CDS YP_005278083.1 378713190 11777215 complement(2527663..2528976) 1 NC_016902.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: eoi:ECO111_1792 coenzyme A ligase; PFAM: AMP-dependent synthetase and ligase; phenylacetate-CoA ligase 2528976 11777215 EKO11_2415 Escherichia coli KO11FL phenylacetate-CoA ligase YP_005278083.1 2527663 R 595495 CDS YP_005278084.1 378713191 11777216 complement(2529003..2530208) 1 NC_016902.1 KEGG: eoh:ECO103_1534 beta-ketoadipyl CoA thiolase; TIGRFAM: beta-ketoadipyl CoA thiolase; acetyl-CoA acetyltransferase; PFAM: Thiolase-like; beta-ketoadipyl CoA thiolase 2530208 11777216 EKO11_2416 Escherichia coli KO11FL beta-ketoadipyl CoA thiolase YP_005278084.1 2529003 R 595495 CDS YP_005278085.1 378713192 11777217 complement(2530208..2530630) 1 NC_016902.1 KEGG: efe:EFER_1600 phenylacetate pathway hotdog-fold thioesterase; TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; phenylacetic acid degradation protein PaaD 2530630 11777217 EKO11_2417 Escherichia coli KO11FL phenylacetic acid degradation protein PaaD YP_005278085.1 2530208 R 595495 CDS YP_005278086.1 378713193 11777218 complement(2530620..2532002) 1 NC_016902.1 KEGG: eoi:ECO111_1789 3-hydroxy-acyl-CoA dehydrogenase; TIGRFAM: 3-hydroxyacyl-CoA dehydrogenase PaaC; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; 3-hydroxyacyl-CoA dehydrogenase 2532002 11777218 EKO11_2418 Escherichia coli KO11FL 3-hydroxyacyl-CoA dehydrogenase YP_005278086.1 2530620 R 595495 CDS YP_005278087.1 378713194 11779553 complement(2532049..2532837) 1 NC_016902.1 KEGG: eoi:ECO111_1788 enoyl-CoA hydratase; TIGRFAM: phenylacetate degradation, enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase; phenylacetate degradation, enoyl-CoA hydratase paaB 2532837 11779553 EKO11_2419 Escherichia coli KO11FL phenylacetate degradation, enoyl-CoA hydratase paaB YP_005278087.1 2532049 R 595495 CDS YP_005278088.1 378713195 11777219 complement(2532837..2533604) 1 NC_016902.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: eoh:ECO103_1530 enoyl-CoA hydratase-isomerase; Enoyl-CoA hydratase/isomerase 2533604 11777219 EKO11_2420 Escherichia coli KO11FL Enoyl-CoA hydratase/isomerase YP_005278088.1 2532837 R 595495 CDS YP_005278089.1 378713196 11777220 complement(2533601..2534671) 1 NC_016902.1 KEGG: eoh:ECO103_1529 ferredoxin reductase electron transfer component; TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; phenylacetate-CoA oxygenase/reductase subunit PaaK 2534671 11777220 EKO11_2421 Escherichia coli KO11FL phenylacetate-CoA oxygenase/reductase subunit PaaK YP_005278089.1 2533601 R 595495 CDS YP_005278090.1 378713197 11777221 complement(2534679..2535176) 1 NC_016902.1 KEGG: eoh:ECO103_1528 putative multicomponent oxygenase/reductase subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; phenylacetate-CoA oxygenase subunit PaaJ 2535176 11777221 EKO11_2422 Escherichia coli KO11FL phenylacetate-CoA oxygenase subunit PaaJ YP_005278090.1 2534679 R 595495 CDS YP_005278091.1 378713198 11777222 complement(2535191..2535937) 1 NC_016902.1 KEGG: eoi:ECO111_1784 putative multicomponent oxygenase/reductase subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; phenylacetate-CoA oxygenase subunit PaaI 2535937 11777222 EKO11_2423 Escherichia coli KO11FL phenylacetate-CoA oxygenase subunit PaaI YP_005278091.1 2535191 R 595495 CDS YP_005278092.1 378713199 11777223 complement(2535946..2536233) 1 NC_016902.1 KEGG: eoh:ECO103_1526 phenylacetate-CoA oxygenase subunit PaaB; TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; phenylacetate-CoA oxygenase subunit PaaH 2536233 11777223 EKO11_2424 Escherichia coli KO11FL phenylacetate-CoA oxygenase subunit PaaH YP_005278092.1 2535946 R 595495 CDS YP_005278093.1 378713200 11777224 complement(2536245..2537174) 1 NC_016902.1 KEGG: eoh:ECO103_1525 phenylacetate-CoA oxygenase subunit PaaA; TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; phenylacetate-CoA oxygenase subunit PaaG 2537174 11777224 EKO11_2425 Escherichia coli KO11FL phenylacetate-CoA oxygenase subunit PaaG YP_005278093.1 2536245 R 595495 CDS YP_005278094.1 378713201 11777225 2537459..2539504 1 NC_016902.1 KEGG: ebw:BWG_1216 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; phenylacetic acid degradation protein paaN 2539504 11777225 EKO11_2426 Escherichia coli KO11FL phenylacetic acid degradation protein paaN YP_005278094.1 2537459 D 595495 CDS YP_005278095.1 378713202 11777226 2539752..2542025 1 NC_016902.1 KEGG: eoi:ECO111_1780 tyramine oxidase; PFAM: Copper amine oxidase domain-containing protein; Copper amine oxidase N3-terminal; Copper amine oxidase N2-terminal; copper amine oxidase-like domain-containing protein; Primary-amine oxidase 2542025 11777226 EKO11_2427 Escherichia coli KO11FL Primary-amine oxidase YP_005278095.1 2539752 D 595495 CDS YP_005278096.1 378713203 11777227 complement(2542083..2543582) 1 NC_016902.1 PFAM: Aldehyde Dehydrogenase; KEGG: eoh:ECO103_1522 phenylacetaldehyde dehydrogenase; Aldehyde Dehydrogenase 2543582 11777227 EKO11_2428 Escherichia coli KO11FL Aldehyde Dehydrogenase YP_005278096.1 2542083 R 595495 CDS YP_005278097.1 378713204 11777228 2543818..2544723 1 NC_016902.1 KEGG: ebw:BWG_1213 DNA-binding transcriptional activator FeaR; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2544723 11777228 EKO11_2429 Escherichia coli KO11FL AraC family transcriptional regulator YP_005278097.1 2543818 D 595495 CDS YP_005278098.1 378713205 11777229 complement(2544895..2545221) 1 NC_016902.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: eoh:ECO103_1520 hypothetical protein; hypothetical protein 2545221 11777229 EKO11_2430 Escherichia coli KO11FL hypothetical protein YP_005278098.1 2544895 R 595495 CDS YP_005278099.1 378713206 11777230 complement(2545229..2545414) 1 NC_016902.1 KEGG: eoi:ECO111_1775 putative lipoprotein; putative lipoprotein 2545414 11777230 EKO11_2431 Escherichia coli KO11FL putative lipoprotein YP_005278099.1 2545229 R 595495 CDS YP_005278100.1 378713207 11777231 complement(2545411..2548050) 1 NC_016902.1 KEGG: eoi:ECO111_1774 hypothetical protein; hypothetical protein 2548050 11777231 EKO11_2432 Escherichia coli KO11FL hypothetical protein YP_005278100.1 2545411 R 595495 CDS YP_005278101.1 378713208 11777232 2548258..2549247 1 NC_016902.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sbc:SbBS512_E1618 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 2549247 11777232 EKO11_2433 Escherichia coli KO11FL D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_005278101.1 2548258 D 595495 CDS YP_005278102.1 378713209 11779554 2549358..2549780 1 NC_016902.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: sbc:SbBS512_E1616 heat-inducible protein; hypothetical protein 2549780 11779554 EKO11_2434 Escherichia coli KO11FL hypothetical protein YP_005278102.1 2549358 D 595495 CDS YP_005278103.1 378713210 11777233 complement(2549777..2550043) 1 NC_016902.1 PFAM: protein of unknown function DUF333; KEGG: sdy:SDY_1462 hypothetical protein; hypothetical protein 2550043 11777233 EKO11_2435 Escherichia coli KO11FL hypothetical protein YP_005278103.1 2549777 R 595495 CDS YP_005278104.1 378713211 11777234 2550317..2553841 1 NC_016902.1 KEGG: eoh:ECO103_1513 fused putative pyruvate-flavodoxin oxidoreductase: hypothetical protein/hypothetical protein/FeS binding protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; pyruvate ferredoxin/flavodoxin oxidoreductase 2553841 11777234 EKO11_2436 Escherichia coli KO11FL pyruvate ferredoxin/flavodoxin oxidoreductase YP_005278104.1 2550317 D 595495 CDS YP_005278105.1 378713212 11777235 2554207..2555340 1 NC_016902.1 PFAM: porin Gram-negative type; KEGG: ebd:ECBD_2247 porin gram-negative type; porin 2555340 11777235 EKO11_2437 Escherichia coli KO11FL porin YP_005278105.1 2554207 D 595495 CDS YP_005278106.1 378713213 11777236 2555481..2555915 1 NC_016902.1 PFAM: UspA domain-containing protein; KEGG: eoh:ECO103_1511 stress-induced protein, ATP-binding protein; UspA domain-containing protein 2555915 11777236 EKO11_2438 Escherichia coli KO11FL UspA domain-containing protein YP_005278106.1 2555481 D 595495 CDS YP_005278107.1 378713214 11777237 complement(2556199..2556342) 1 NC_016902.1 hypothetical protein 2556342 11777237 EKO11_2439 Escherichia coli KO11FL hypothetical protein YP_005278107.1 2556199 R 595495 CDS YP_005278108.1 378713215 11777238 complement(2556455..2557027) 1 NC_016902.1 KEGG: cro:ROD_02391 putative phage tail fibre protein; putative phage tail fiber protein 2557027 11777238 EKO11_2440 Escherichia coli KO11FL putative phage tail fiber protein YP_005278108.1 2556455 R 595495 CDS YP_005278109.1 378713216 11777239 complement(2557042..2560182) 1 NC_016902.1 PFAM: Prophage tail fibre domain protein; tail fiber repeat 2 protein; KEGG: sei:SPC_2700 Gifsy-2 prophage probable tail fiber protein; Prophage tail fiber domain protein 2560182 11777239 EKO11_2441 Escherichia coli KO11FL Prophage tail fiber domain protein YP_005278109.1 2557042 R 595495 CDS YP_005278110.1 378713217 11777240 complement(2560206..2560751) 1 NC_016902.1 PFAM: tail assembly chaperone gp38; KEGG: sbo:SBO_0956 putative tail fiber assembly protein; tail assembly chaperone gp38 2560751 11777240 EKO11_2442 Escherichia coli KO11FL tail assembly chaperone gp38 YP_005278110.1 2560206 R 595495 CDS YP_005278111.1 378713218 11777241 complement(2560754..2562307) 1 NC_016902.1 KEGG: sbo:SBO_0647 putative tail fiber protein; hypothetical protein 2562307 11777241 EKO11_2443 Escherichia coli KO11FL hypothetical protein YP_005278111.1 2560754 R 595495 CDS YP_005278112.1 378713219 11777242 complement(2562304..2562930) 1 NC_016902.1 KEGG: sed:SeD_A1122 hypothetical protein; hypothetical protein 2562930 11777242 EKO11_2444 Escherichia coli KO11FL hypothetical protein YP_005278112.1 2562304 R 595495 CDS YP_005278113.1 378713220 11777243 complement(2562914..2564140) 1 NC_016902.1 KEGG: sed:SeD_A1121 hypothetical protein; hypothetical protein 2564140 11777243 EKO11_2445 Escherichia coli KO11FL hypothetical protein YP_005278113.1 2562914 R 595495 CDS YP_005278114.1 378713221 11777244 2564162..2564701 1 NC_016902.1 KEGG: sbi:SORBI_10g007560 hypothetical protein; hypothetical protein 2564701 11777244 EKO11_2446 Escherichia coli KO11FL hypothetical protein YP_005278114.1 2564162 D 595495 CDS YP_005278115.1 378713222 11777245 complement(2564727..2564966) 1 NC_016902.1 hypothetical protein 2564966 11777245 EKO11_2447 Escherichia coli KO11FL hypothetical protein YP_005278115.1 2564727 R 595495 CDS YP_005278116.1 378713223 11777246 complement(2565092..2565439) 1 NC_016902.1 KEGG: sed:SeD_A1120 hypothetical protein; hypothetical protein 2565439 11777246 EKO11_2448 Escherichia coli KO11FL hypothetical protein YP_005278116.1 2565092 R 595495 CDS YP_005278117.1 378713224 11777247 complement(2565713..2565874) 1 NC_016902.1 manually curated; KEGG: stt:t1872 putative bacteriophage protein; hypothetical protein 2565874 11777247 EKO11_2449 Escherichia coli KO11FL hypothetical protein YP_005278117.1 2565713 R 595495 CDS YP_005278118.1 378713225 11777248 complement(2565829..2566026) 1 NC_016902.1 hypothetical protein 2566026 11777248 EKO11_2450 Escherichia coli KO11FL hypothetical protein YP_005278118.1 2565829 R 595495 CDS YP_005278119.1 378713226 11777249 complement(2566136..2566849) 1 NC_016902.1 KEGG: bcj:BCAM1899 putative phage baseplate protein; putative phage baseplate protein 2566849 11777249 EKO11_2451 Escherichia coli KO11FL putative phage baseplate protein YP_005278119.1 2566136 R 595495 CDS YP_005278120.1 378713227 11777250 complement(2566849..2567856) 1 NC_016902.1 KEGG: rcu:RCOM_0102660 hypothetical protein; hypothetical protein 2567856 11777250 EKO11_2452 Escherichia coli KO11FL hypothetical protein YP_005278120.1 2566849 R 595495 CDS YP_005278121.1 378713228 11779555 complement(2567856..2568122) 1 NC_016902.1 KEGG: sed:SeD_A1117 hypothetical protein; hypothetical protein 2568122 11779555 EKO11_2453 Escherichia coli KO11FL hypothetical protein YP_005278121.1 2567856 R 595495 CDS YP_005278122.1 378713229 11779556 complement(2568119..2568787) 1 NC_016902.1 KEGG: ent:Ent638_1044 hypothetical protein; hypothetical protein 2568787 11779556 EKO11_2454 Escherichia coli KO11FL hypothetical protein YP_005278122.1 2568119 R 595495 CDS YP_005278123.1 378713230 11777251 complement(2568791..2570779) 1 NC_016902.1 PFAM: Lytic transglycosylase catalytic; KEGG: see:SNSL254_A1168 lytic transglycosylase, catalytic; lytic transglycosylase 2570779 11777251 EKO11_2455 Escherichia coli KO11FL lytic transglycosylase YP_005278123.1 2568791 R 595495 CDS YP_005278124.1 378713231 11777252 complement(2570843..2571460) 1 NC_016902.1 KEGG: ent:Ent638_1042 hypothetical protein; hypothetical protein 2571460 11777252 EKO11_2456 Escherichia coli KO11FL hypothetical protein YP_005278124.1 2570843 R 595495 CDS YP_005278125.1 378713232 11777253 complement(2571457..2571900) 1 NC_016902.1 KEGG: sed:SeD_A1111 hypothetical protein; hypothetical protein 2571900 11777253 EKO11_2457 Escherichia coli KO11FL hypothetical protein YP_005278125.1 2571457 R 595495 CDS YP_005278126.1 378713233 11777254 complement(2571912..2573249) 1 NC_016902.1 KEGG: sed:SeD_A1110 hypothetical protein; hypothetical protein 2573249 11777254 EKO11_2458 Escherichia coli KO11FL hypothetical protein YP_005278126.1 2571912 R 595495 CDS YP_005278127.1 378713234 11779557 complement(2573249..2574193) 1 NC_016902.1 KEGG: ent:Ent638_1039 hypothetical protein; hypothetical protein 2574193 11779557 EKO11_2459 Escherichia coli KO11FL hypothetical protein YP_005278127.1 2573249 R 595495 CDS YP_005278128.1 378713235 11777255 complement(2574180..2574620) 1 NC_016902.1 KEGG: sed:SeD_A1108 hypothetical protein; hypothetical protein 2574620 11777255 EKO11_2460 Escherichia coli KO11FL hypothetical protein YP_005278128.1 2574180 R 595495 CDS YP_005278129.1 378713236 11777256 complement(2574617..2575057) 1 NC_016902.1 KEGG: sed:SeD_A1107 hypothetical protein; hypothetical protein 2575057 11777256 EKO11_2461 Escherichia coli KO11FL hypothetical protein YP_005278129.1 2574617 R 595495 CDS YP_005278130.1 378713237 11777257 complement(2575057..2575527) 1 NC_016902.1 KEGG: ent:Ent638_1036 hypothetical protein; hypothetical protein 2575527 11777257 EKO11_2462 Escherichia coli KO11FL hypothetical protein YP_005278130.1 2575057 R 595495 CDS YP_005278131.1 378713238 11779558 complement(2575585..2576613) 1 NC_016902.1 KEGG: spq:SPAB_01008 hypothetical protein; hypothetical protein 2576613 11779558 EKO11_2463 Escherichia coli KO11FL hypothetical protein YP_005278131.1 2575585 R 595495 CDS YP_005278132.1 378713239 11777258 complement(2576628..2577245) 1 NC_016902.1 KEGG: spq:SPAB_01007 hypothetical protein; hypothetical protein 2577245 11777258 EKO11_2464 Escherichia coli KO11FL hypothetical protein YP_005278132.1 2576628 R 595495 CDS YP_005278133.1 378713240 11777259 complement(2577238..2578560) 1 NC_016902.1 KEGG: sed:SeD_A1103 NUDIX hydrolase; NUDIX hydrolase 2578560 11777259 EKO11_2465 Escherichia coli KO11FL NUDIX hydrolase YP_005278133.1 2577238 R 595495 CDS YP_005278134.1 378713241 11777260 complement(2578541..2579374) 1 NC_016902.1 KEGG: ent:Ent638_1032 hypothetical protein; hypothetical protein 2579374 11777260 EKO11_2466 Escherichia coli KO11FL hypothetical protein YP_005278134.1 2578541 R 595495 CDS YP_005278135.1 378713242 11777261 complement(2579319..2580755) 1 NC_016902.1 KEGG: sed:SeD_A1101 hypothetical protein; hypothetical protein 2580755 11777261 EKO11_2467 Escherichia coli KO11FL hypothetical protein YP_005278135.1 2579319 R 595495 CDS YP_005278136.1 378713243 11777262 complement(2580774..2582102) 1 NC_016902.1 KEGG: spq:SPAB_01003 hypothetical protein; hypothetical protein 2582102 11777262 EKO11_2468 Escherichia coli KO11FL hypothetical protein YP_005278136.1 2580774 R 595495 CDS YP_005278137.1 378713244 11777263 complement(2582092..2583183) 1 NC_016902.1 KEGG: kva:Kvar_2100 terminase small subunit; terminase small subunit 2583183 11777263 EKO11_2469 Escherichia coli KO11FL terminase small subunit YP_005278137.1 2582092 R 595495 CDS YP_005278138.1 378713245 11777264 complement(2583187..2583438) 1 NC_016902.1 manually curated; KEGG: ypi:YpsIP31758_2229 hypothetical protein; hypothetical protein 2583438 11777264 EKO11_2470 Escherichia coli KO11FL hypothetical protein YP_005278138.1 2583187 R 595495 CDS YP_005278139.1 378713246 11777265 complement(2583374..2584306) 1 NC_016902.1 KEGG: tgo:TGME49_104650 hypothetical protein; hypothetical protein 2584306 11777265 EKO11_2471 Escherichia coli KO11FL hypothetical protein YP_005278139.1 2583374 R 595495 CDS YP_005278140.1 378713247 11777266 complement(2584299..2585087) 1 NC_016902.1 KEGG: ypi:YpsIP31758_2231 ParB family protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; ParB domain-containing protein nuclease 2585087 11777266 EKO11_2472 Escherichia coli KO11FL ParB domain-containing protein nuclease YP_005278140.1 2584299 R 595495 CDS YP_005278141.1 378713248 11779559 complement(2585211..2585318) 1 NC_016902.1 hypothetical protein 2585318 11779559 EKO11_2473 Escherichia coli KO11FL hypothetical protein YP_005278141.1 2585211 R 595495 CDS YP_005278142.1 378713249 11779560 complement(2585492..2585647) 1 NC_016902.1 KEGG: set:SEN1396 putative phage encoded exported protein; hypothetical protein 2585647 11779560 EKO11_2474 Escherichia coli KO11FL hypothetical protein YP_005278142.1 2585492 R 595495 CDS YP_005278143.1 378713250 11777267 complement(2585689..2586066) 1 NC_016902.1 KEGG: eok:G2583_2135 phage capsid scaffolding protein; phage capsid scaffolding protein 2586066 11777267 EKO11_2475 Escherichia coli KO11FL phage capsid scaffolding protein YP_005278143.1 2585689 R 595495 CDS YP_005278144.1 378713251 11777268 complement(2586069..2586344) 1 NC_016902.1 PFAM: protein of unknown function DUF754; KEGG: set:SEN1394 putative prophage membrane protein; hypothetical protein 2586344 11777268 EKO11_2476 Escherichia coli KO11FL hypothetical protein YP_005278144.1 2586069 R 595495 CDS YP_005278145.1 378713252 11777269 complement(2586334..2586726) 1 NC_016902.1 KEGG: cro:ROD_02691 putative prophage membrane protein; putative prophage membrane protein 2586726 11777269 EKO11_2477 Escherichia coli KO11FL putative prophage membrane protein YP_005278145.1 2586334 R 595495 CDS YP_005278146.1 378713253 11777272 complement(2587997..2588533) 1 NC_016902.1 PFAM: protein of unknown function DUF1133; KEGG: set:SEN1391 hypothetical protein; hypothetical protein 2588533 11777272 EKO11_2478 Escherichia coli KO11FL hypothetical protein YP_005278146.1 2587997 R 595495 CDS YP_005278147.1 378713254 11779561 complement(2588530..2588820) 1 NC_016902.1 PFAM: protein of unknown function DUF1364; KEGG: ssn:SSON_1777 putative bacteriophage protein; hypothetical protein 2588820 11779561 EKO11_2479 Escherichia coli KO11FL hypothetical protein YP_005278147.1 2588530 R 595495 CDS YP_005278148.1 378713255 11779562 complement(2588820..2589419) 1 NC_016902.1 PFAM: protein of unknown function DUF1367; KEGG: ssn:SSON_1778 unknown protein encoded within prophage; hypothetical protein 2589419 11779562 EKO11_2480 Escherichia coli KO11FL hypothetical protein YP_005278148.1 2588820 R 595495 CDS YP_005278149.1 378713256 11777273 complement(2589888..2590043) 1 NC_016902.1 PFAM: Hok/gef cell toxic protein; KEGG: sty:STY2054 hypothetical protein; Hok/gef cell toxic protein 2590043 11777273 EKO11_2481 Escherichia coli KO11FL Hok/gef cell toxic protein YP_005278149.1 2589888 R 595495 CDS YP_005278150.1 378713257 11777274 complement(2590674..2591651) 1 NC_016902.1 KEGG: dat:HRM2_15030 hypothetical protein; hypothetical protein 2591651 11777274 EKO11_2482 Escherichia coli KO11FL hypothetical protein YP_005278150.1 2590674 R 595495 CDS YP_005278151.1 378713258 11777275 complement(2591648..2592757) 1 NC_016902.1 KEGG: dat:HRM2_15020 putative ATP-dependent endonuclease (OLD family protein); putative ATP-dependent endonuclease (OLD family protein) 2592757 11777275 EKO11_2483 Escherichia coli KO11FL putative ATP-dependent endonuclease (OLD family protein) YP_005278151.1 2591648 R 595495 CDS YP_005278152.1 378713259 11777276 complement(2592750..2593877) 1 NC_016902.1 PFAM: protein of unknown function DUF262; KEGG: dat:HRM2_15010 hypothetical protein; hypothetical protein 2593877 11777276 EKO11_2484 Escherichia coli KO11FL hypothetical protein YP_005278152.1 2592750 R 595495 CDS YP_005278153.1 378713260 11777277 complement(2594061..2594483) 1 NC_016902.1 PFAM: protein of unknown function DUF977; KEGG: sbc:SbBS512_E1436 hypothetical protein; hypothetical protein 2594483 11777277 EKO11_2485 Escherichia coli KO11FL hypothetical protein YP_005278153.1 2594061 R 595495 CDS YP_005278154.1 378713261 11777278 complement(2594499..2595260) 1 NC_016902.1 PFAM: protein of unknown function DUF1627; KEGG: eoj:ECO26_1929 hypothetical protein; hypothetical protein 2595260 11777278 EKO11_2486 Escherichia coli KO11FL hypothetical protein YP_005278154.1 2594499 R 595495 CDS YP_005278155.1 378713262 11777279 complement(2595283..2596029) 1 NC_016902.1 KEGG: ebw:BWG_1195 putative replication protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB domain-containing protein ATP-binding protein 2596029 11777279 EKO11_2487 Escherichia coli KO11FL IstB domain-containing protein ATP-binding protein YP_005278155.1 2595283 R 595495 CDS YP_005278156.1 378713263 11777280 complement(2596036..2596893) 1 NC_016902.1 KEGG: ebw:BWG_1194 Rac prophage; hypothetical protein; putative Rac prophage protein 2596893 11777280 EKO11_2488 Escherichia coli KO11FL putative Rac prophage protein YP_005278156.1 2596036 R 595495 CDS YP_005278157.1 378713264 11777281 complement(2596906..2597328) 1 NC_016902.1 PFAM: protein of unknown function DUF1019; KEGG: eoj:ECO26_1926 putative phage regulatory protein CII; hypothetical protein 2597328 11777281 EKO11_2489 Escherichia coli KO11FL hypothetical protein YP_005278157.1 2596906 R 595495 CDS YP_005278158.1 378713265 11777282 complement(2597325..2597579) 1 NC_016902.1 KEGG: eoj:ECO26_1925 putative antirepressor Cro; putative antirepressor Cro 2597579 11777282 EKO11_2490 Escherichia coli KO11FL putative antirepressor Cro YP_005278158.1 2597325 R 595495 CDS YP_005278159.1 378713266 11777283 2597659..2598078 1 NC_016902.1 KEGG: sbo:SBO_0973 putative transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 2598078 11777283 EKO11_2491 Escherichia coli KO11FL helix-turn-helix domain-containing protein YP_005278159.1 2597659 D 595495 CDS YP_005278160.1 378713267 11777284 2598115..2598333 1 NC_016902.1 manually curated; KEGG: eoi:ECO111_1410 hypothetical protein; hypothetical protein 2598333 11777284 EKO11_2492 Escherichia coli KO11FL hypothetical protein YP_005278160.1 2598115 D 595495 CDS YP_005278161.1 378713268 11777285 2598509..2598661 1 NC_016902.1 PFAM: protein of unknown function DUF1391; KEGG: ebd:ECBD_2262 protein of unknown function DUF1391; hypothetical protein 2598661 11777285 EKO11_2493 Escherichia coli KO11FL hypothetical protein YP_005278161.1 2598509 D 595495 CDS YP_005278162.1 378713269 11777286 2599082..2599303 1 NC_016902.1 KEGG: eoj:ECO26_2668 FtsZ inhibitor protein; FtsZ inhibitor protein 2599303 11777286 EKO11_2494 Escherichia coli KO11FL FtsZ inhibitor protein YP_005278162.1 2599082 D 595495 CDS YP_005278163.1 378713270 11777287 2599303..2599473 1 NC_016902.1 KEGG: eoj:ECO26_2669 hypothetical protein; hypothetical protein 2599473 11777287 EKO11_2495 Escherichia coli KO11FL hypothetical protein YP_005278163.1 2599303 D 595495 CDS YP_005278164.1 378713271 11777288 2599548..2599823 1 NC_016902.1 KEGG: ebd:ECBD_2266 hypothetical protein; hypothetical protein 2599823 11777288 EKO11_2496 Escherichia coli KO11FL hypothetical protein YP_005278164.1 2599548 D 595495 CDS YP_005278165.1 378713272 11777289 2599925..2602525 1 NC_016902.1 PFAM: exodeoxyribonuclease VIII; KEGG: ebr:ECB_01327 exonuclease VIII; exodeoxyribonuclease VIII 2602525 11777289 EKO11_2497 Escherichia coli KO11FL exodeoxyribonuclease VIII YP_005278165.1 2599925 D 595495 CDS YP_005278166.1 378713273 11777290 2602518..2603327 1 NC_016902.1 KEGG: ebd:ECBD_2268 recombination and repair protein RecT; TIGRFAM: RecT protein; PFAM: DNA single-strand annealing protein RecT-like; RecT protein 2603327 11777290 EKO11_2498 Escherichia coli KO11FL RecT protein YP_005278166.1 2602518 D 595495 CDS YP_005278167.1 378713274 11777291 2603345..2603578 1 NC_016902.1 KEGG: eoj:ECO26_2673 restriction alleviation and modification protein; manually curated; TIGRFAM: restriction alleviation protein, Lar family; restriction alleviation protein, Lar family 2603578 11777291 EKO11_2499 Escherichia coli KO11FL restriction alleviation protein, Lar family YP_005278167.1 2603345 D 595495 CDS YP_005278168.1 378713275 11777292 2603559..2603780 1 NC_016902.1 KEGG: ebd:ECBD_2269 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1187; hypothetical protein 2603780 11777292 EKO11_2500 Escherichia coli KO11FL hypothetical protein YP_005278168.1 2603559 D 595495 CDS YP_005278169.1 378713276 11777293 2603859..2604074 1 NC_016902.1 PFAM: protein of unknown function DUF1233 excisionase; KEGG: ebd:ECBD_2270 protein of unknown function DUF1233 excisionase putative; hypothetical protein 2604074 11777293 EKO11_2501 Escherichia coli KO11FL hypothetical protein YP_005278169.1 2603859 D 595495 CDS YP_005278170.1 378713277 11777294 2604076..2605311 1 NC_016902.1 PFAM: integrase family protein; KEGG: ebw:BWG_1179 Rac prophage; integrase; integrase family protein 2605311 11777294 EKO11_2502 Escherichia coli KO11FL integrase family protein YP_005278170.1 2604076 D 595495 CDS YP_005278171.1 378713278 11777295 2605363..2606298 1 NC_016902.1 PFAM: PP-loop domain protein; KEGG: ssn:SSON_1787 C32 tRNA thiolase; PP-loop domain-containing protein 2606298 11777295 EKO11_2503 Escherichia coli KO11FL PP-loop domain-containing protein YP_005278171.1 2605363 D 595495 CDS YP_005278172.1 378713279 11777296 complement(2606427..2607800) 1 NC_016902.1 KEGG: eoh:ECO103_1509 ATP-dependent RNA helicase DbpA; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 2607800 11777296 EKO11_2504 Escherichia coli KO11FL DEAD/DEAH box helicase YP_005278172.1 2606427 R 595495 CDS YP_005278173.1 378713280 11777297 complement(2607830..2608003) 1 NC_016902.1 KEGG: ebd:ECBD_2274 hypothetical protein; hypothetical protein 2608003 11777297 EKO11_2505 Escherichia coli KO11FL hypothetical protein YP_005278173.1 2607830 R 595495 CDS YP_005278174.1 378713281 11777298 complement(2608278..2609261) 1 NC_016902.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: sdy:SDY_1424 zinc transporter; Mg2 transporter protein CorA family protein 2609261 11777298 EKO11_2506 Escherichia coli KO11FL Mg2 transporter protein CorA family protein YP_005278174.1 2608278 R 595495 CDS YP_005278175.1 378713282 11777299 2609516..2610748 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: ebw:BWG_1175 putative diguanylate cyclase, GGDEF domain signalling protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 2610748 11777299 EKO11_2507 Escherichia coli KO11FL PAS/PAC sensor-containing diguanylate cyclase YP_005278175.1 2609516 D 595495 CDS YP_005278176.1 378713283 11777300 complement(2610769..2611332) 1 NC_016902.1 KEGG: ssn:SSON_1791 hypothetical protein; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; Smr protein/MutS2 2611332 11777300 EKO11_2508 Escherichia coli KO11FL Smr protein/MutS2 YP_005278176.1 2610769 R 595495 CDS YP_005278177.1 378713284 11777301 complement(2611662..2612570) 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eoh:ECO103_1505 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 2612570 11777301 EKO11_2509 Escherichia coli KO11FL LysR family transcriptional regulator YP_005278177.1 2611662 R 595495 CDS YP_005278178.1 378713285 11779563 2612746..2614056 1 NC_016902.1 KEGG: eoi:ECO111_1724 putative peptidase, aminobenzoyl-glutamate utilization protein AbgA; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2614056 11779563 EKO11_2510 Escherichia coli KO11FL amidohydrolase YP_005278178.1 2612746 D 595495 CDS YP_005278179.1 378713286 11777302 2614056..2615501 1 NC_016902.1 KEGG: ssn:SSON_1794 hypothetical protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2615501 11777302 EKO11_2511 Escherichia coli KO11FL amidohydrolase YP_005278179.1 2614056 D 595495 CDS YP_005278180.1 378713287 11777303 2615538..2617064 1 NC_016902.1 KEGG: eok:G2583_1684 aminobenzoyl-glutamate transport protein; TIGRFAM: AbgT transporter family; PFAM: AbgT transporter; AbgT transporter family 2617064 11777303 EKO11_2512 Escherichia coli KO11FL AbgT transporter family YP_005278180.1 2615538 D 595495 CDS YP_005278181.1 378713288 11777304 2617075..2617590 1 NC_016902.1 KEGG: ssn:SSON_1798 O-6-alkylguanine-DNA:cysteine-protein methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; methylated-DNA--protein-cysteine methyltransferase 2617590 11777304 EKO11_2513 Escherichia coli KO11FL methylated-DNA--protein-cysteine methyltransferase YP_005278181.1 2617075 D 595495 CDS YP_005278182.1 378713289 11777305 2617785..2618537 1 NC_016902.1 KEGG: sbc:SbBS512_E1575 fumarate/nitrate reduction transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; CarD family transcriptional regulator 2618537 11777305 EKO11_2514 Escherichia coli KO11FL CarD family transcriptional regulator YP_005278182.1 2617785 D 595495 CDS YP_005278183.1 378713290 11777306 2618689..2619639 1 NC_016902.1 PFAM: UspA domain-containing protein; KEGG: ssn:SSON_1800 universal stress protein UspE; UspA domain-containing protein 2619639 11777306 EKO11_2515 Escherichia coli KO11FL UspA domain-containing protein YP_005278183.1 2618689 D 595495 CDS YP_005278184.1 378713291 11777307 complement(2619689..2619946) 1 NC_016902.1 PFAM: Protein of unknown function DUF2534; KEGG: ssn:SSON_1801 hypothetical protein; hypothetical protein 2619946 11777307 EKO11_2516 Escherichia coli KO11FL hypothetical protein YP_005278184.1 2619689 R 595495 CDS YP_005278185.1 378713292 11779564 2620190..2621221 1 NC_016902.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sbc:SbBS512_E1570 transporter, small conductance mechanosensitive ion channel family; mechanosensitive ion channel MscS 2621221 11779564 EKO11_2517 Escherichia coli KO11FL mechanosensitive ion channel MscS YP_005278185.1 2620190 D 595495 CDS YP_005278186.1 378713293 11777308 complement(2621272..2622885) 1 NC_016902.1 PFAM: extracellular solute-binding protein family 5; KEGG: ebd:ECBD_2287 extracellular solute-binding protein family 5; family 5 extracellular solute-binding protein 2622885 11777308 EKO11_2518 Escherichia coli KO11FL family 5 extracellular solute-binding protein YP_005278186.1 2621272 R 595495 CDS YP_005278187.1 378713294 11777310 complement(2623222..2624121) 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbo:SBO_1734 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2624121 11777310 EKO11_2520 Escherichia coli KO11FL LysR family transcriptional regulator YP_005278187.1 2623222 R 595495 CDS YP_005278188.1 378713295 11777311 2624259..2625179 1 NC_016902.1 KEGG: ssn:SSON_1806 hypothetical protein; hypothetical protein 2625179 11777311 EKO11_2521 Escherichia coli KO11FL hypothetical protein YP_005278188.1 2624259 D 595495 CDS YP_005278189.1 378713296 11777312 2626117..2626767 1 NC_016902.1 KEGG: eok:G2583_1674 NmrA family protein; NmrA family protein 2626767 11777312 EKO11_2523 Escherichia coli KO11FL NmrA family protein YP_005278189.1 2626117 D 595495 CDS YP_005278190.1 378713297 11777313 2627058..2627786 1 NC_016902.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: sbo:SBO_1744 murein peptide amidase A; peptidase M14 carboxypeptidase A 2627786 11777313 EKO11_2524 Escherichia coli KO11FL peptidase M14 carboxypeptidase A YP_005278190.1 2627058 D 595495 CDS YP_005278191.1 378713298 11777314 complement(2627761..2628726) 1 NC_016902.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: eoj:ECO26_1893 L-Ala-D/L-Glu epimerase; mandelate racemase/muconate lactonizing protein 2628726 11777314 EKO11_2525 Escherichia coli KO11FL mandelate racemase/muconate lactonizing protein YP_005278191.1 2627761 R 595495 CDS YP_005278192.1 378713299 11777315 2628845..2629351 1 NC_016902.1 PFAM: Redoxin domain protein; KEGG: sdy:SDY_1402 thiol peroxidase; Redoxin domain-containing protein 2629351 11777315 EKO11_2526 Escherichia coli KO11FL Redoxin domain-containing protein YP_005278192.1 2628845 D 595495 CDS YP_005278193.1 378713300 11779566 complement(2629395..2630936) 1 NC_016902.1 KEGG: eoh:ECO103_1488 DNA-binding transcriptional regulator TyrR; PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; PAS domain containing protein; transcriptional regulator TyrR 2630936 11779566 EKO11_2527 Escherichia coli KO11FL transcriptional regulator TyrR YP_005278193.1 2629395 R 595495 CDS YP_005278194.1 378713301 11777316 complement(2631084..2632145) 1 NC_016902.1 PFAM: Uncharacterised protein family UPF0283; KEGG: sbc:SbBS512_E1555 hypothetical protein; hypothetical protein 2632145 11777316 EKO11_2528 Escherichia coli KO11FL hypothetical protein YP_005278194.1 2631084 R 595495 CDS YP_005278195.1 378713302 11777317 complement(2632142..2633539) 1 NC_016902.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: eoh:ECO103_1486 hypothetical protein; hypothetical protein 2633539 11777317 EKO11_2529 Escherichia coli KO11FL hypothetical protein YP_005278195.1 2632142 R 595495 CDS YP_005278196.1 378713303 11779567 2633694..2634692 1 NC_016902.1 KEGG: eoh:ECO103_1485 putative DNA-binding transcriptional regulator, LacI-type; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator 2634692 11779567 EKO11_2530 Escherichia coli KO11FL LacI family transcriptional regulator YP_005278196.1 2633694 D 595495 CDS YP_005278197.1 378713304 11777318 complement(2634803..2635708) 1 NC_016902.1 PFAM: Outer membrane protein G; KEGG: ebd:ECBD_2298 hypothetical protein; Outer membrane protein G 2635708 11777318 EKO11_2531 Escherichia coli KO11FL Outer membrane protein G YP_005278197.1 2634803 R 595495 CDS YP_005278198.1 378713305 11777319 complement(2635753..2636835) 1 NC_016902.1 KEGG: eoh:ECO103_1482 putative sugar transporter subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 2636835 11777319 EKO11_2532 Escherichia coli KO11FL ABC transporter YP_005278198.1 2635753 R 595495 CDS YP_005278199.1 378713306 11777320 complement(2636849..2637508) 1 NC_016902.1 KEGG: eoh:ECO103_1481 putative beta-phosphoglucomutase; TIGRFAM: beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; beta-phosphoglucomutase 2637508 11777320 EKO11_2533 Escherichia coli KO11FL beta-phosphoglucomutase YP_005278199.1 2636849 R 595495 CDS YP_005278200.1 378713307 11777321 complement(2637505..2639772) 1 NC_016902.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: eoh:ECO103_1480 putative hydrolase; glycoside hydrolase family protein 2639772 11777321 EKO11_2534 Escherichia coli KO11FL glycoside hydrolase family protein YP_005278200.1 2637505 R 595495 CDS YP_005278201.1 378713308 11779568 complement(2639769..2640824) 1 NC_016902.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ebd:ECBD_2302 oxidoreductase domain protein; oxidoreductase domain-containing protein 2640824 11779568 EKO11_2535 Escherichia coli KO11FL oxidoreductase domain-containing protein YP_005278201.1 2639769 R 595495 CDS YP_005278202.1 378713309 11777322 complement(2640834..2641622) 1 NC_016902.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: ebd:ECBD_2303 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 2641622 11777322 EKO11_2536 Escherichia coli KO11FL xylose isomerase domain-containing protein YP_005278202.1 2640834 R 595495 CDS YP_005278203.1 378713310 11777323 complement(2641640..2642692) 1 NC_016902.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: sfv:SFV_1329 putative oxidoreductase; alcohol dehydrogenase 2642692 11777323 EKO11_2537 Escherichia coli KO11FL alcohol dehydrogenase YP_005278203.1 2641640 R 595495 CDS YP_005278204.1 378713311 11777324 complement(2642723..2643565) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ebd:ECBD_2305 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2643565 11777324 EKO11_2538 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278204.1 2642723 R 595495 CDS YP_005278205.1 378713312 11777325 complement(2643552..2644433) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1829 putative binding-protein dependent transport protein; binding-protein-dependent transport system inner membrane protein 2644433 11777325 EKO11_2539 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278205.1 2643552 R 595495 CDS YP_005278206.1 378713313 11777326 complement(2644454..2645746) 1 NC_016902.1 PFAM: extracellular solute-binding protein family 1; KEGG: eoi:ECO111_1694 putative sugar transporter subunit; extracellular solute-binding protein 2645746 11777326 EKO11_2540 Escherichia coli KO11FL extracellular solute-binding protein YP_005278206.1 2644454 R 595495 CDS YP_005278207.1 378713314 11777327 complement(2645760..2647439) 1 NC_016902.1 KEGG: ebd:ECBD_2308 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; alpha amylase 2647439 11777327 EKO11_2541 Escherichia coli KO11FL alpha amylase YP_005278207.1 2645760 R 595495 CDS YP_005278208.1 378713315 11777328 complement(2647652..2647966) 1 NC_016902.1 TIGRFAM: phage shock operon rhodanese PspE; PFAM: Rhodanese domain protein; KEGG: sbc:SbBS512_E1544 thiosulfate:cyanide sulfurtransferase; SMART: Rhodanese domain protein; phage shock operon rhodanese PspE 2647966 11777328 EKO11_2542 Escherichia coli KO11FL phage shock operon rhodanese PspE YP_005278208.1 2647652 R 595495 CDS YP_005278209.1 378713316 11777329 complement(2648041..2648262) 1 NC_016902.1 KEGG: sdy:SDY_1937 peripheral inner membrane phage-shock protein; TIGRFAM: phage shock protein PspD; PFAM: shock protein PspD; phage shock protein PspD 2648262 11777329 EKO11_2543 Escherichia coli KO11FL phage shock protein PspD YP_005278209.1 2648041 R 595495 CDS YP_005278210.1 378713317 11777330 complement(2648271..2648630) 1 NC_016902.1 KEGG: eoh:ECO103_1470 DNA-binding transcriptional activator PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain protein; phage shock protein C, PspC 2648630 11777330 EKO11_2544 Escherichia coli KO11FL phage shock protein C, PspC YP_005278210.1 2648271 R 595495 CDS YP_005278211.1 378713318 11777331 complement(2648630..2648854) 1 NC_016902.1 KEGG: sdy:SDY_1939 phage shock protein B; TIGRFAM: phage shock protein B; PFAM: shock B family protein; phage shock protein B 2648854 11777331 EKO11_2545 Escherichia coli KO11FL phage shock protein B YP_005278211.1 2648630 R 595495 CDS YP_005278212.1 378713319 11777332 complement(2648908..2649576) 1 NC_016902.1 KEGG: sbc:SbBS512_E1540 phage shock protein PspA; TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; phage shock protein A, PspA 2649576 11777332 EKO11_2546 Escherichia coli KO11FL phage shock protein A, PspA YP_005278212.1 2648908 R 595495 CDS YP_005278213.1 378713320 11779569 2649743..2650720 1 NC_016902.1 TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; KEGG: eok:G2583_1650 PSP operon transcriptional activator; SMART: AAA ATPase; Fis family sigma-54 specific transcriptional activator PspF 2650720 11779569 EKO11_2547 Escherichia coli KO11FL Fis family sigma-54 specific transcriptional activator PspF YP_005278213.1 2649743 D 595495 CDS YP_005278214.1 378713321 11777333 complement(2650840..2652105) 1 NC_016902.1 KEGG: sbo:SBO_1760 4-aminobutyrate transaminase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; 4-aminobutyrate aminotransferase 2652105 11777333 EKO11_2548 Escherichia coli KO11FL 4-aminobutyrate aminotransferase YP_005278214.1 2650840 R 595495 CDS YP_005278215.1 378713322 11777334 complement(2652143..2653423) 1 NC_016902.1 PFAM: FAD dependent oxidoreductase; KEGG: ebd:ECBD_2316 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2653423 11777334 EKO11_2549 Escherichia coli KO11FL FAD dependent oxidoreductase YP_005278215.1 2652143 R 595495 CDS YP_005278216.1 378713323 11777335 complement(2653425..2654912) 1 NC_016902.1 PFAM: Aldehyde Dehydrogenase; KEGG: sfv:SFV_1314 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Aldehyde Dehydrogenase 2654912 11777335 EKO11_2550 Escherichia coli KO11FL Aldehyde Dehydrogenase YP_005278216.1 2653425 R 595495 CDS YP_005278217.1 378713324 11777336 complement(2655187..2655744) 1 NC_016902.1 KEGG: sdy:SDY_1945 DNA-binding transcriptional repressor PuuR; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; cupin 2655744 11777336 EKO11_2551 Escherichia coli KO11FL cupin YP_005278217.1 2655187 R 595495 CDS YP_005278218.1 378713325 11777337 complement(2655771..2656535) 1 NC_016902.1 KEGG: eok:G2583_1645 gamma-glutamyl-gamma-aminobutyrate hydrolase; PFAM: peptidase C26; gamma-glutamyl-gamma-aminobutyrate hydrolase 2656535 11777337 EKO11_2552 Escherichia coli KO11FL gamma-glutamyl-gamma-aminobutyrate hydrolase YP_005278218.1 2655771 R 595495 CDS YP_005278219.1 378713326 11777338 2656747..2658165 1 NC_016902.1 PFAM: glutamine synthetase catalytic region; KEGG: eoi:ECO111_1680 gamma-Glu-putrescine synthase; glutamine synthetase 2658165 11777338 EKO11_2553 Escherichia coli KO11FL glutamine synthetase YP_005278219.1 2656747 D 595495 CDS YP_005278220.1 378713327 11777339 2658468..2659853 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: ebd:ECBD_2321 amino acid permease-associated region; amino acid permease 2659853 11777339 EKO11_2554 Escherichia coli KO11FL amino acid permease YP_005278220.1 2658468 D 595495 CDS YP_005278221.1 378713328 11777340 2659987..2660232 1 NC_016902.1 KEGG: sdy:SDY_1637 hypothetical protein; hypothetical protein 2660232 11777340 EKO11_2555 Escherichia coli KO11FL hypothetical protein YP_005278221.1 2659987 D 595495 CDS YP_005278222.1 378713329 11777341 2660545..2662188 1 NC_016902.1 PFAM: extracellular solute-binding protein family 5; KEGG: sbc:SbBS512_E1530 peptide ABC transporter, periplasmic peptide-binding protein; family 5 extracellular solute-binding protein 2662188 11777341 EKO11_2556 Escherichia coli KO11FL family 5 extracellular solute-binding protein YP_005278222.1 2660545 D 595495 CDS YP_005278223.1 378713330 11777342 2662185..2663150 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E1529 peptide ABC transporter, permease protein SapB; binding-protein-dependent transport system inner membrane protein 2663150 11777342 EKO11_2557 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278223.1 2662185 D 595495 CDS YP_005278224.1 378713331 11777343 2663137..2664027 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E1528 peptide ABC transporter, permease protein SapC; binding-protein-dependent transport system inner membrane protein 2664027 11777343 EKO11_2558 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278224.1 2663137 D 595495 CDS YP_005278225.1 378713332 11777344 2664027..2665019 1 NC_016902.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: sbc:SbBS512_E1527 peptide ABC transporter, ATP-binding protein SapD; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2665019 11777344 EKO11_2559 Escherichia coli KO11FL oligopeptide/dipeptide ABC transporter ATPase YP_005278225.1 2664027 D 595495 CDS YP_005278226.1 378713333 11777345 2665021..2665827 1 NC_016902.1 KEGG: sbc:SbBS512_E1526 peptide ABC transporter, ATP-binding protein SapF; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2665827 11777345 EKO11_2560 Escherichia coli KO11FL ABC transporter YP_005278226.1 2665021 D 595495 CDS YP_005278227.1 378713334 11777346 2665898..2666248 1 NC_016902.1 KEGG: eoh:ECO103_1453 hypothetical protein; hypothetical protein 2666248 11777346 EKO11_2561 Escherichia coli KO11FL hypothetical protein YP_005278227.1 2665898 D 595495 CDS YP_005278228.1 378713335 11779570 2666618..2667406 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbo:SBO_1774 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 2667406 11779570 EKO11_2562 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005278228.1 2666618 D 595495 CDS YP_005278229.1 378713336 11777347 2667551..2668678 1 NC_016902.1 KEGG: eoh:ECO103_1451 putative oxidoreductase; putative oxidoreductase 2668678 11777347 EKO11_2563 Escherichia coli KO11FL putative oxidoreductase YP_005278229.1 2667551 D 595495 CDS YP_005278230.1 378713337 11777348 2668746..2670680 1 NC_016902.1 SMART: Cold shock protein; TIGRFAM: exoribonuclease II; VacB and RNase II family 3'-5' exoribonuclease; KEGG: eoh:ECO103_1450 exoribonuclease II; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; exoribonuclease II 2670680 11777348 EKO11_2564 Escherichia coli KO11FL exoribonuclease II YP_005278230.1 2668746 D 595495 CDS YP_005278231.1 378713338 11777349 2670916..2672901 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: eoh:ECO103_1449 RNase II stability modulator; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2672901 11777349 EKO11_2565 Escherichia coli KO11FL PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_005278231.1 2670916 D 595495 CDS YP_005278232.1 378713339 11777350 2673048..2673221 1 NC_016902.1 KEGG: sdy:SDY_1362 hypothetical protein; hypothetical protein 2673221 11777350 EKO11_2566 Escherichia coli KO11FL hypothetical protein YP_005278232.1 2673048 D 595495 CDS YP_005278233.1 378713340 11777351 2673311..2674060 1 NC_016902.1 KEGG: sdy:SDY_1361 putative DeoR-type transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 2674060 11777351 EKO11_2567 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005278233.1 2673311 D 595495 CDS YP_005278234.1 378713341 11777352 2674329..2674547 1 NC_016902.1 KEGG: cro:ROD_17171 osmotically inducible lipoprotein B; osmotically inducible lipoprotein B 2674547 11777352 EKO11_2568 Escherichia coli KO11FL osmotically inducible lipoprotein B YP_005278234.1 2674329 D 595495 CDS YP_005278235.1 378713342 11777353 complement(2674673..2674999) 1 NC_016902.1 KEGG: ssn:SSON_1858 translation initiation factor SUI1; TIGRFAM: translation initiation factor SUI1; PFAM: translation initiation factor SUI1; translation initiation factor SUI1 2674999 11777353 EKO11_2569 Escherichia coli KO11FL translation initiation factor SUI1 YP_005278235.1 2674673 R 595495 CDS YP_005278236.1 378713343 11777354 complement(2674999..2675796) 1 NC_016902.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: ebd:ECBD_2338 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2675796 11777354 EKO11_2570 Escherichia coli KO11FL orotidine 5'-phosphate decarboxylase YP_005278236.1 2674999 R 595495 CDS YP_005278237.1 378713344 11777355 complement(2675929..2677098) 1 NC_016902.1 KEGG: sbc:SbBS512_E1508 tetratricopeptide repeat protein; tetratricopeptide repeat protein 2677098 11777355 EKO11_2571 Escherichia coli KO11FL tetratricopeptide repeat protein YP_005278237.1 2675929 R 595495 CDS YP_005278238.1 378713345 11777356 complement(2677105..2677413) 1 NC_016902.1 KEGG: sbc:SbBS512_E1507 hypothetical protein; hypothetical protein 2677413 11777356 EKO11_2572 Escherichia coli KO11FL hypothetical protein YP_005278238.1 2677105 R 595495 CDS YP_005278239.1 378713346 11777357 complement(2677562..2678326) 1 NC_016902.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sdy:SDY_1354 phosphatidylglycerophosphatase B; SMART: phosphoesterase PA-phosphatase related; phosphatidylglycerophosphatase 2678326 11777357 EKO11_2573 Escherichia coli KO11FL phosphatidylglycerophosphatase YP_005278239.1 2677562 R 595495 CDS YP_005278240.1 378713347 11777358 2678496..2679086 1 NC_016902.1 TIGRFAM: GTP cyclohydrolase II; KEGG: sbo:SBO_1787 GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II; GTP cyclohydrolase II 2679086 11777358 EKO11_2574 Escherichia coli KO11FL GTP cyclohydrolase II YP_005278240.1 2678496 D 595495 CDS YP_005278241.1 378713348 11777359 complement(2679150..2681825) 1 NC_016902.1 KEGG: eoi:ECO111_1657 aconitate hydratase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain-containing protein; aconitate hydratase 1 2681825 11777359 EKO11_2575 Escherichia coli KO11FL aconitate hydratase 1 YP_005278241.1 2679150 R 595495 CDS YP_005278242.1 378713349 11777360 complement(2682198..2682365) 1 NC_016902.1 KEGG: sdy:SDY_1349 hypothetical protein; hypothetical protein 2682365 11777360 EKO11_2576 Escherichia coli KO11FL hypothetical protein YP_005278242.1 2682198 R 595495 CDS YP_005278243.1 378713350 11777361 complement(2682368..2682496) 1 NC_016902.1 KEGG: sdy:SDY_1348 hypothetical protein; hypothetical protein 2682496 11777361 EKO11_2577 Escherichia coli KO11FL hypothetical protein YP_005278243.1 2682368 R 595495 CDS YP_005278244.1 378713351 11777362 complement(2682827..2683801) 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbc:SbBS512_E1501 transcriptional regulator CysB; LysR family transcriptional regulator 2683801 11777362 EKO11_2578 Escherichia coli KO11FL LysR family transcriptional regulator YP_005278244.1 2682827 R 595495 CDS YP_005278245.1 378713352 11777363 complement(2684011..2686608) 1 NC_016902.1 SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; TIGRFAM: DNA topoisomerase I; KEGG: sbo:SBO_1792 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase I zinc ribbon domain protein; DNA topoisomerase I 2686608 11777363 EKO11_2579 Escherichia coli KO11FL DNA topoisomerase I YP_005278245.1 2684011 R 595495 CDS YP_005278246.1 378713353 11779571 2686988..2687239 1 NC_016902.1 PFAM: Protein of unknown function DUF2498; KEGG: sdy:SDY_1343 hypothetical protein; hypothetical protein 2687239 11779571 EKO11_2580 Escherichia coli KO11FL hypothetical protein YP_005278246.1 2686988 D 595495 CDS YP_005278247.1 378713354 11777364 complement(2687275..2688324) 1 NC_016902.1 PFAM: Peptidase S49 domain protein; peptidase S49; KEGG: ssn:SSON_1871 putative periplasmic protease; peptidase S49 domain protein 2688324 11777364 EKO11_2581 Escherichia coli KO11FL peptidase S49 domain protein YP_005278247.1 2687275 R 595495 CDS YP_005278248.1 378713355 11777365 2688544..2689302 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eoh:ECO103_1432 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2689302 11777365 EKO11_2582 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005278248.1 2688544 D 595495 CDS YP_005278249.1 378713356 11779572 2689299..2689889 1 NC_016902.1 TIGRFAM: cob(I)alamin adenosyltransferase; KEGG: ssn:SSON_1873 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 2689889 11779572 EKO11_2583 Escherichia coli KO11FL cob(I)alamin adenosyltransferase YP_005278249.1 2689299 D 595495 CDS YP_005278250.1 378713357 11777366 complement(2689929..2690801) 1 NC_016902.1 KEGG: sbo:SBO_1797 23S rRNA pseudouridylate synthase B; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; pseudouridine synthase 2690801 11777366 EKO11_2584 Escherichia coli KO11FL pseudouridine synthase YP_005278250.1 2689929 R 595495 CDS YP_005278251.1 378713358 11777367 complement(2690902..2691522) 1 NC_016902.1 KEGG: sbc:SbBS512_E1491 hypothetical protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; Sua5/YciO/YrdC/YwlC family protein 2691522 11777367 EKO11_2585 Escherichia coli KO11FL Sua5/YciO/YrdC/YwlC family protein YP_005278251.1 2690902 R 595495 CDS YP_005278252.1 378713359 11779573 complement(2691519..2692400) 1 NC_016902.1 KEGG: eoh:ECO103_1428 hypothetical protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; PHP domain-containing protein 2692400 11779573 EKO11_2586 Escherichia coli KO11FL PHP domain-containing protein YP_005278252.1 2691519 R 595495 CDS YP_005278253.1 378713360 11777368 2692673..2694235 1 NC_016902.1 KEGG: eoh:ECO103_1426 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; anthranilate synthase component I 2694235 11777368 EKO11_2587 Escherichia coli KO11FL anthranilate synthase component I YP_005278253.1 2692673 D 595495 CDS YP_005278254.1 378713361 11777369 2694235..2695830 1 NC_016902.1 KEGG: ebd:ECBD_2359 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; glutamine amidotransferase of anthranilate synthase; PFAM: glycosyl transferase family 3; glutamine amidotransferase class-I; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 2695830 11777369 EKO11_2588 Escherichia coli KO11FL anthranilate phosphoribosyltransferase YP_005278254.1 2694235 D 595495 CDS YP_005278255.1 378713362 11777370 2695834..2697192 1 NC_016902.1 KEGG: ebd:ECBD_2360 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; PFAM: Indole-3-glycerol phosphate synthase; N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Indole-3-glycerol-phosphate synthase., Phosphoribosylanthranilate isomerase 2697192 11777370 EKO11_2589 Escherichia coli KO11FL Indole-3-glycerol-phosphate synthase., Phosphoribosylanthranilate isomerase YP_005278255.1 2695834 D 595495 CDS YP_005278256.1 378713363 11777371 2697204..2698397 1 NC_016902.1 KEGG: sfv:SFV_1275 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 2698397 11777371 EKO11_2590 Escherichia coli KO11FL tryptophan synthase subunit beta YP_005278256.1 2697204 D 595495 CDS YP_005278257.1 378713364 11777372 2698397..2699203 1 NC_016902.1 KEGG: eoh:ECO103_1422 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 2699203 11777372 EKO11_2591 Escherichia coli KO11FL tryptophan synthase subunit alpha YP_005278257.1 2698397 D 595495 CDS YP_005278258.1 378713365 11777373 2699584..2699763 1 NC_016902.1 PFAM: Stress-induced protein, KGG, repeat; KEGG: sfv:SFV_1273 hypothetical protein; Stress-induced protein, KGG, repeat 2699763 11777373 EKO11_2592 Escherichia coli KO11FL Stress-induced protein, KGG, repeat YP_005278258.1 2699584 D 595495 CDS YP_005278259.1 378713366 11777374 2699849..2700349 1 NC_016902.1 PFAM: protein of unknown function DUF892; KEGG: eok:G2583_1597 YciF protein; hypothetical protein 2700349 11777374 EKO11_2593 Escherichia coli KO11FL hypothetical protein YP_005278259.1 2699849 D 595495 CDS YP_005278260.1 378713367 11777375 2700395..2700901 1 NC_016902.1 PFAM: protein of unknown function DUF892; KEGG: eoh:ECO103_1419 hypothetical protein; hypothetical protein 2700901 11777375 EKO11_2594 Escherichia coli KO11FL hypothetical protein YP_005278260.1 2700395 D 595495 CDS YP_005278261.1 378713368 11777376 complement(2700961..2701599) 1 NC_016902.1 PFAM: OmpW family protein; KEGG: sbo:SBO_1809 outer membrane protein W; OmpW family protein 2701599 11777376 EKO11_2595 Escherichia coli KO11FL OmpW family protein YP_005278261.1 2700961 R 595495 CDS YP_005278262.1 378713369 11777377 2701956..2702699 1 NC_016902.1 PFAM: protein of unknown function UPF0259; KEGG: ssn:SSON_1911 hypothetical protein; hypothetical protein 2702699 11777377 EKO11_2596 Escherichia coli KO11FL hypothetical protein YP_005278262.1 2701956 D 595495 CDS YP_005278263.1 378713370 11777378 2702729..2703268 1 NC_016902.1 KEGG: sbc:SbBS512_E1423 intracellular septation protein A; TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; intracellular septation protein A 2703268 11777378 EKO11_2597 Escherichia coli KO11FL intracellular septation protein A YP_005278263.1 2702729 D 595495 CDS YP_005278264.1 378713371 11777379 2703373..2703771 1 NC_016902.1 PFAM: thioesterase superfamily protein; KEGG: sdy:SDY_1317 acyl-CoA thioester hydrolase; thioesterase superfamily protein 2703771 11777379 EKO11_2598 Escherichia coli KO11FL thioesterase superfamily protein YP_005278264.1 2703373 D 595495 CDS YP_005278265.1 378713372 11777380 complement(2703811..2704545) 1 NC_016902.1 KEGG: ebd:ECBD_2370 transport protein TonB; TIGRFAM: TonB family protein; PFAM: TonB domain; TonB family protein 2704545 11777380 EKO11_2599 Escherichia coli KO11FL TonB family protein YP_005278265.1 2703811 R 595495 CDS YP_005278266.1 378713373 11777381 2704754..2705050 1 NC_016902.1 PFAM: YCII-related; KEGG: sbo:SBO_1814 YciI-like protein; hypothetical protein 2705050 11777381 EKO11_2600 Escherichia coli KO11FL hypothetical protein YP_005278266.1 2704754 D 595495 CDS YP_005278267.1 378713374 11777382 2705350..2706603 1 NC_016902.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: sbo:SBO_1817 voltage-gated potassium channel; TrkA-N domain-containing protein 2706603 11777382 EKO11_2601 Escherichia coli KO11FL TrkA-N domain-containing protein YP_005278267.1 2705350 D 595495 CDS YP_005278268.1 378713375 11777383 complement(2706658..2706831) 1 NC_016902.1 manually curated; KEGG: eok:G2583_1522 hypothetical protein; hypothetical protein 2706831 11777383 EKO11_2602 Escherichia coli KO11FL hypothetical protein YP_005278268.1 2706658 R 595495 CDS YP_005278269.1 378713376 11779574 2706974..2708434 1 NC_016902.1 KEGG: ssn:SSON_1931 cardiolipin synthetase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; phospholipase D/Transphosphatidylase 2708434 11779574 EKO11_2603 Escherichia coli KO11FL phospholipase D/Transphosphatidylase YP_005278269.1 2706974 D 595495 CDS YP_005278270.1 378713377 11777384 2708469..2708798 1 NC_016902.1 PFAM: protein of unknown function DUF440; KEGG: sdy:SDY_1306 dsDNA-mimic protein; hypothetical protein 2708798 11777384 EKO11_2604 Escherichia coli KO11FL hypothetical protein YP_005278270.1 2708469 D 595495 CDS YP_005278271.1 378713378 11777385 complement(2708851..2709855) 1 NC_016902.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: sfv:SFV_1259 ATP-binding protein of oligopeptide ABC transport system; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2709855 11777385 EKO11_2605 Escherichia coli KO11FL oligopeptide/dipeptide ABC transporter ATPase YP_005278271.1 2708851 R 595495 CDS YP_005278272.1 378713379 11779575 complement(2709852..2710865) 1 NC_016902.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ebd:ECBD_2376 oligopeptide transporter ATP-binding component; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2710865 11779575 EKO11_2606 Escherichia coli KO11FL oligopeptide/dipeptide ABC transporter ATPase YP_005278272.1 2709852 R 595495 CDS YP_005278273.1 378713380 11777386 complement(2710877..2711785) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1935 oligopeptide transport permease protein-like protein; binding-protein-dependent transport system inner membrane protein 2711785 11777386 EKO11_2607 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278273.1 2710877 R 595495 CDS YP_005278274.1 378713381 11777387 complement(2711800..2712720) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_1823 oligopeptide transporter permease; binding-protein-dependent transport system inner membrane protein 2712720 11777387 EKO11_2608 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278274.1 2711800 R 595495 CDS YP_005278275.1 378713382 11777388 complement(2712806..2714437) 1 NC_016902.1 PFAM: extracellular solute-binding protein family 5; KEGG: sbo:SBO_1824 oligopeptide transport periplasmic binding protein; family 5 extracellular solute-binding protein 2714437 11777388 EKO11_2609 Escherichia coli KO11FL family 5 extracellular solute-binding protein YP_005278275.1 2712806 R 595495 CDS YP_005278276.1 378713383 11777389 2714721..2715017 1 NC_016902.1 manually curated; KEGG: ebd:ECBD_2380 hypothetical protein; hypothetical protein 2715017 11777389 EKO11_2610 Escherichia coli KO11FL hypothetical protein YP_005278276.1 2714721 D 595495 CDS YP_005278277.1 378713384 11777390 complement(2714993..2715148) 1 NC_016902.1 KEGG: ebd:ECBD_2381 hypothetical protein; hypothetical protein 2715148 11777390 EKO11_2611 Escherichia coli KO11FL hypothetical protein YP_005278277.1 2714993 R 595495 CDS YP_005278278.1 378713385 11777391 complement(2715175..2715822) 1 NC_016902.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ssn:SSON_1938 hypothetical protein; multiple antibiotic resistance (MarC)-like protein 2715822 11777391 EKO11_2612 Escherichia coli KO11FL multiple antibiotic resistance (MarC)-like protein YP_005278278.1 2715175 R 595495 CDS YP_005278279.1 378713386 11777392 2716299..2718974 1 NC_016902.1 PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: sdy:SDY_1295 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2718974 11777392 EKO11_2613 Escherichia coli KO11FL iron-containing alcohol dehydrogenase YP_005278279.1 2716299 D 595495 CDS YP_005278280.1 378713387 11777393 complement(2719276..2719893) 1 NC_016902.1 KEGG: sbo:SBO_1831 thymidine kinase; PFAM: thymidine kinase; thymidine kinase 2719893 11777393 EKO11_2614 Escherichia coli KO11FL thymidine kinase YP_005278280.1 2719276 R 595495 CDS YP_005278281.1 378713388 11777394 2720498..2720911 1 NC_016902.1 KEGG: sdy:SDY_1289 global DNA-binding transcriptional dual regulator H-NS; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 2720911 11777394 EKO11_2615 Escherichia coli KO11FL histone family protein nucleoid-structuring protein H-NS YP_005278281.1 2720498 D 595495 CDS YP_005278282.1 378713389 11777395 complement(2721055..2721963) 1 NC_016902.1 KEGG: sdy:SDY_1288 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 2721963 11777395 EKO11_2616 Escherichia coli KO11FL UTP-glucose-1-phosphate uridylyltransferase YP_005278282.1 2721055 R 595495 CDS YP_005278283.1 378713390 11777396 complement(2722165..2723178) 1 NC_016902.1 KEGG: eoi:ECO111_1563 response regulator of RpoS; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2723178 11777396 EKO11_2617 Escherichia coli KO11FL response regulator receiver protein YP_005278283.1 2722165 R 595495 CDS YP_005278284.1 378713391 11777397 complement(2723270..2724214) 1 NC_016902.1 PFAM: Patatin; KEGG: eok:G2583_1508 phospholipase, patatin family; patatin 2724214 11777397 EKO11_2618 Escherichia coli KO11FL patatin YP_005278284.1 2723270 R 595495 CDS YP_005278285.1 378713392 11777398 2724288..2724746 1 NC_016902.1 PFAM: SEC-C motif domain protein; KEGG: sbc:SbBS512_E1398 hypothetical protein; SEC-C motif domain-containing protein 2724746 11777398 EKO11_2619 Escherichia coli KO11FL SEC-C motif domain-containing protein YP_005278285.1 2724288 D 595495 CDS YP_005278286.1 378713393 11777399 2724796..2725638 1 NC_016902.1 KEGG: sbo:SBO_1837 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; formyltetrahydrofolate deformylase 2725638 11777399 EKO11_2620 Escherichia coli KO11FL formyltetrahydrofolate deformylase YP_005278286.1 2724796 D 595495 CDS YP_005278287.1 378713394 11777402 complement(2726002..2726181) 1 NC_016902.1 manually curated; KEGG: eoh:ECO103_1333 hypothetical protein; hypothetical protein 2726181 11777402 EKO11_2621 Escherichia coli KO11FL hypothetical protein YP_005278287.1 2726002 R 595495 CDS YP_005278288.1 378713395 11777403 complement(2726364..2727041) 1 NC_016902.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; KEGG: sbc:SbBS512_E1395 respiratory nitrate reductase 1, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 2727041 11777403 EKO11_2622 Escherichia coli KO11FL respiratory nitrate reductase subunit gamma YP_005278288.1 2726364 R 595495 CDS YP_005278289.1 378713396 11779576 complement(2727041..2727751) 1 NC_016902.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; KEGG: sbc:SbBS512_E1394 nitrate reductase molybdenum cofactor assembly chaperone 1; PFAM: TorD-like chaperone; nitrate reductase molybdenum cofactor assembly chaperone 2727751 11779576 EKO11_2623 Escherichia coli KO11FL nitrate reductase molybdenum cofactor assembly chaperone YP_005278289.1 2727041 R 595495 CDS YP_005278290.1 378713397 11777404 complement(2727748..2729286) 1 NC_016902.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: sbo:SBO_1841 nitrate reductase 1 beta subunit; nitrate reductase subunit beta 2729286 11777404 EKO11_2624 Escherichia coli KO11FL nitrate reductase subunit beta YP_005278290.1 2727748 R 595495 CDS YP_005278291.1 378713398 11777405 complement(2729283..2733026) 1 NC_016902.1 KEGG: eoh:ECO103_1329 nitrate reductase 1, alpha subunit; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 2733026 11777405 EKO11_2625 Escherichia coli KO11FL nitrate reductase subunit alpha YP_005278291.1 2729283 R 595495 CDS YP_005278292.1 378713399 11779577 complement(2733542..2734933) 1 NC_016902.1 KEGG: sbc:SbBS512_E1391 nitrite extrusion protein 1; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; nitrite transporter 2734933 11779577 EKO11_2626 Escherichia coli KO11FL nitrite transporter YP_005278292.1 2733542 R 595495 CDS YP_005278293.1 378713400 11777406 complement(2735028..2735246) 1 NC_016902.1 KEGG: sbc:SbBS512_E1390 hypothetical protein; hypothetical protein 2735246 11777406 EKO11_2627 Escherichia coli KO11FL hypothetical protein YP_005278293.1 2735028 R 595495 CDS YP_005278294.1 378713401 11777407 2735272..2737068 1 NC_016902.1 KEGG: sfv:SFV_1238 nitrate/nitrite sensor protein NarX; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 2737068 11777407 EKO11_2628 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005278294.1 2735272 D 595495 CDS YP_005278295.1 378713402 11779578 2737061..2737711 1 NC_016902.1 KEGG: sdy:SDY_1275 transcriptional regulator NarL; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; two component transcriptional regulator, LuxR family 2737711 11779578 EKO11_2629 Escherichia coli KO11FL two component transcriptional regulator, LuxR family YP_005278295.1 2737061 D 595495 CDS YP_005278296.1 378713403 11777408 complement(2737712..2739106) 1 NC_016902.1 KEGG: eoh:ECO103_1325 hypothetical protein; hypothetical protein 2739106 11777408 EKO11_2630 Escherichia coli KO11FL hypothetical protein YP_005278296.1 2737712 R 595495 CDS YP_005278297.1 378713404 11777409 2739291..2739644 1 NC_016902.1 PFAM: DsrE family protein; KEGG: sdy:SDY_1271 hypothetical protein; DsrE family protein 2739644 11777409 EKO11_2631 Escherichia coli KO11FL DsrE family protein YP_005278297.1 2739291 D 595495 CDS YP_005278298.1 378713405 11777410 complement(2739684..2740403) 1 NC_016902.1 PFAM: ChaC family protein; KEGG: sbc:SbBS512_E1385 ChaC protein; ChaC family protein 2740403 11777410 EKO11_2632 Escherichia coli KO11FL ChaC family protein YP_005278298.1 2739684 R 595495 CDS YP_005278299.1 378713406 11777411 complement(2740540..2740770) 1 NC_016902.1 PFAM: ChaB family protein; KEGG: sdy:SDY_1269 cation transport regulator; ChaB family protein 2740770 11777411 EKO11_2633 Escherichia coli KO11FL ChaB family protein YP_005278299.1 2740540 R 595495 CDS YP_005278300.1 378713407 11777412 2740953..2742140 1 NC_016902.1 manually curated; TIGRFAM: calcium/proton exchanger; KEGG: sfv:SFV_1232 calcium/sodium:proton antiporter; PFAM: sodium/calcium exchanger membrane region; calcium/proton exchanger 2742140 11777412 EKO11_2634 Escherichia coli KO11FL calcium/proton exchanger YP_005278300.1 2740953 D 595495 CDS YP_005278301.1 378713408 11777414 2742545..2742652 1 NC_016902.1 KEGG: ebr:ECB_01193 toxic polypeptide, small; toxic polypeptide, small 2742652 11777414 EKO11_2636 Escherichia coli KO11FL toxic polypeptide, small YP_005278301.1 2742545 D 595495 CDS YP_005278302.1 378713409 11777417 complement(2743872..2744726) 1 NC_016902.1 KEGG: sdy:SDY_1264 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase 2744726 11777417 EKO11_2639 Escherichia coli KO11FL 2-dehydro-3-deoxyphosphooctonate aldolase YP_005278302.1 2743872 R 595495 CDS YP_005278303.1 378713410 11777418 complement(2744762..2745571) 1 NC_016902.1 KEGG: sbc:SbBS512_E1378 putative transcriptional regulator; putative transcriptional regulator 2745571 11777418 EKO11_2640 Escherichia coli KO11FL putative transcriptional regulator YP_005278303.1 2744762 R 595495 CDS YP_005278304.1 378713411 11777419 complement(2745575..2745967) 1 NC_016902.1 PFAM: Invasion gene expression up-regulator SirB; KEGG: sdy:SDY_1262 putative transcriptional regulator; Invasion gene expression up-regulator SirB 2745967 11777419 EKO11_2641 Escherichia coli KO11FL Invasion gene expression up-regulator SirB YP_005278304.1 2745575 R 595495 CDS YP_005278305.1 378713412 11777420 complement(2745964..2746797) 1 NC_016902.1 KEGG: ssn:SSON_1966 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-N5) methyltransferase 2746797 11777420 EKO11_2642 Escherichia coli KO11FL protein-(glutamine-N5) methyltransferase YP_005278305.1 2745964 R 595495 CDS YP_005278306.1 378713413 11779579 complement(2746797..2747879) 1 NC_016902.1 KEGG: sdy:SDY_1260 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 1 2747879 11779579 EKO11_2643 Escherichia coli KO11FL peptide chain release factor 1 YP_005278306.1 2746797 R 595495 CDS YP_005278307.1 378713414 11777421 complement(2747921..2749246) 1 NC_016902.1 manually curated; TIGRFAM: glutamyl-tRNA reductase; KEGG: sfv:SFV_1224 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; Shikimate/quinate 5-dehydrogenase; glutamyl-tRNA reductase 2749246 11777421 EKO11_2644 Escherichia coli KO11FL glutamyl-tRNA reductase YP_005278307.1 2747921 R 595495 CDS YP_005278308.1 378713415 11777422 2749325..2750014 1 NC_016902.1 manually curated; TIGRFAM: outer membrane lipoprotein LolB; KEGG: sbo:SBO_1858 outer membrane lipoprotein LolB; PFAM: outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 2750014 11777422 EKO11_2645 Escherichia coli KO11FL outer membrane lipoprotein LolB YP_005278308.1 2749325 D 595495 CDS YP_005278309.1 378713416 11777423 2750014..2750865 1 NC_016902.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: sbc:SbBS512_E1372 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2750865 11777423 EKO11_2646 Escherichia coli KO11FL 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_005278309.1 2750014 D 595495 CDS YP_005278310.1 378713417 11777424 2751016..2751963 1 NC_016902.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: ebd:ECBD_2414 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 2751963 11777424 EKO11_2647 Escherichia coli KO11FL ribose-phosphate pyrophosphokinase YP_005278310.1 2751016 D 595495 CDS YP_005278311.1 378713418 11777425 2752115..2753767 1 NC_016902.1 KEGG: sdy:SDY_1255 putative sulfate transporter YchM; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter 2753767 11777425 EKO11_2648 Escherichia coli KO11FL sulfate transporter YP_005278311.1 2752115 D 595495 CDS YP_005278312.1 378713419 11777426 complement(2753822..2754100) 1 NC_016902.1 PFAM: Protein of unknown function DUF2583; KEGG: sbc:SbBS512_E1369 hypothetical protein; hypothetical protein 2754100 11777426 EKO11_2649 Escherichia coli KO11FL hypothetical protein YP_005278312.1 2753822 R 595495 CDS YP_005278313.1 378713420 11777427 2754378..2754962 1 NC_016902.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: ssn:SSON_1974 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 2754962 11777427 EKO11_2650 Escherichia coli KO11FL peptidyl-tRNA hydrolase YP_005278313.1 2754378 D 595495 CDS YP_005278314.1 378713421 11777428 2755079..2756170 1 NC_016902.1 KEGG: sdy:SDY_1252 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; GTP-binding protein YchF 2756170 11777428 EKO11_2651 Escherichia coli KO11FL GTP-binding protein YchF YP_005278314.1 2755079 D 595495 CDS YP_005278315.1 378713422 11777429 complement(2756463..2756666) 1 NC_016902.1 manually curated; KEGG: ssn:SSON_1976 hypothetical protein; hypothetical protein 2756666 11777429 EKO11_2652 Escherichia coli KO11FL hypothetical protein YP_005278315.1 2756463 R 595495 CDS YP_005278316.1 378713423 11777430 2757011..2759896 1 NC_016902.1 KEGG: eoi:ECO111_1531 putative adhesin; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein 2759896 11777430 EKO11_2653 Escherichia coli KO11FL outer membrane autotransporter barrel domain-containing protein YP_005278316.1 2757011 D 595495 CDS YP_005278317.1 378713424 11777431 complement(2759996..2761915) 1 NC_016902.1 KEGG: ebd:ECBD_2421 DNA-binding transcriptional regulator DhaR; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; GAF domain protein; helix-turn-helix Fis-type; SMART: PAS domain containing protein; AAA ATPase; GAF modulated Fis family sigma-54 specific transcriptional regulator 2761915 11777431 EKO11_2654 Escherichia coli KO11FL GAF modulated Fis family sigma-54 specific transcriptional regulator YP_005278317.1 2759996 R 595495 CDS YP_005278318.1 378713425 11777432 2762143..2763213 1 NC_016902.1 TIGRFAM: dihydroxyacetone kinase, DhaK subunit; KEGG: eoi:ECO111_1529 dihydroxyacetone kinase subunit DhaK; PFAM: Dak kinase; dihydroxyacetone kinase subunit DhaK 2763213 11777432 EKO11_2655 Escherichia coli KO11FL dihydroxyacetone kinase subunit DhaK YP_005278318.1 2762143 D 595495 CDS YP_005278319.1 378713426 11777433 2763224..2763856 1 NC_016902.1 KEGG: eoh:ECO103_1301 dihydroxyacetone kinase subunit DhaL; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; dihydroxyacetone kinase subunit DhaL 2763856 11777433 EKO11_2656 Escherichia coli KO11FL dihydroxyacetone kinase subunit DhaL YP_005278319.1 2763224 D 595495 CDS YP_005278320.1 378713427 11777434 2763867..2765285 1 NC_016902.1 KEGG: eoi:ECO111_1527 dihydroxyacetone kinase subunit M; TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: PEP-utilising protein domain protein; PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; PEP-utilising protein mobile region; dihydroxyacetone kinase, phosphotransfer subunit 2765285 11777434 EKO11_2657 Escherichia coli KO11FL dihydroxyacetone kinase, phosphotransfer subunit YP_005278320.1 2763867 D 595495 CDS YP_005278321.1 378713428 11777435 2765605..2767302 1 NC_016902.1 KEGG: eoh:ECO103_1299 trehalase; PFAM: glycoside hydrolase family 37; Alpha,alpha-trehalase 2767302 11777435 EKO11_2658 Escherichia coli KO11FL Alpha,alpha-trehalase YP_005278321.1 2765605 D 595495 CDS YP_005278322.1 378713429 11777436 complement(2767381..2767821) 1 NC_016902.1 manually curated; KEGG: ebd:ECBD_2426 hypothetical protein; hypothetical protein 2767821 11777436 EKO11_2659 Escherichia coli KO11FL hypothetical protein YP_005278322.1 2767381 R 595495 CDS YP_005278323.1 378713430 11777437 complement(2767999..2768253) 1 NC_016902.1 PFAM: Transglycosylase-associated protein; KEGG: ebd:ECBD_2427 transglycosylase-associated protein; transglycosylase 2768253 11777437 EKO11_2660 Escherichia coli KO11FL transglycosylase YP_005278323.1 2767999 R 595495 CDS YP_005278324.1 378713431 11777438 2768454..2769188 1 NC_016902.1 PFAM: YcgR family protein; type IV pilus assembly PilZ; KEGG: sbo:SBO_1878 hypothetical protein; YcgR family protein 2769188 11777438 EKO11_2661 Escherichia coli KO11FL YcgR family protein YP_005278324.1 2768454 D 595495 CDS YP_005278325.1 378713432 11777439 complement(2769190..2769801) 1 NC_016902.1 PFAM: Lytic transglycosylase catalytic; KEGG: sbc:SbBS512_E1351 membrane-bound lytic murein transglycosylase E; lytic transglycosylase 2769801 11777439 EKO11_2662 Escherichia coli KO11FL lytic transglycosylase YP_005278325.1 2769190 R 595495 CDS YP_005278326.1 378713433 11777440 2769901..2770815 1 NC_016902.1 KEGG: eoh:ECO103_1294 L,D-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A; Muramoyltetrapeptide carboxypeptidase 2770815 11777440 EKO11_2663 Escherichia coli KO11FL Muramoyltetrapeptide carboxypeptidase YP_005278326.1 2769901 D 595495 CDS YP_005278327.1 378713434 11777441 2770910..2772646 1 NC_016902.1 PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; transporter-associated region; KEGG: sbc:SbBS512_E1349 potassium/proton antiporter; sodium/hydrogen exchanger 2772646 11777441 EKO11_2664 Escherichia coli KO11FL sodium/hydrogen exchanger YP_005278327.1 2770910 D 595495 CDS YP_005278328.1 378713435 11777442 complement(2772780..2772929) 1 NC_016902.1 hypothetical protein 2772929 11777442 EKO11_2665 Escherichia coli KO11FL hypothetical protein YP_005278328.1 2772780 R 595495 CDS YP_005278329.1 378713436 11777443 complement(2773032..2774102) 1 NC_016902.1 TIGRFAM: alanine racemase; KEGG: eoh:ECO103_1292 alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 2774102 11777443 EKO11_2666 Escherichia coli KO11FL alanine racemase YP_005278329.1 2773032 R 595495 CDS YP_005278330.1 378713437 11779580 complement(2774112..2775410) 1 NC_016902.1 PFAM: FAD dependent oxidoreductase; KEGG: ssn:SSON_1181 D-amino acid dehydrogenase small subunit; FAD dependent oxidoreductase 2775410 11779580 EKO11_2667 Escherichia coli KO11FL FAD dependent oxidoreductase YP_005278330.1 2774112 R 595495 CDS YP_005278331.1 378713438 11777444 2775740..2777272 1 NC_016902.1 PFAM: SpoVR family protein; KEGG: ebd:ECBD_2434 SpoVR family protein; SpoVR family protein 2777272 11777444 EKO11_2668 Escherichia coli KO11FL SpoVR family protein YP_005278331.1 2775740 D 595495 CDS YP_005278332.1 378713439 11777445 complement(2777324..2778043) 1 NC_016902.1 TIGRFAM: fatty acid metabolism transcriptional regulator FadR; PFAM: fatty acid responsive transcription factor FadR domain protein; regulatory protein GntR HTH; KEGG: sdy:SDY_1224 fatty acid metabolism regulator; SMART: regulatory protein GntR HTH; fatty acid metabolism transcriptional regulator FadR 2778043 11777445 EKO11_2669 Escherichia coli KO11FL fatty acid metabolism transcriptional regulator FadR YP_005278332.1 2777324 R 595495 CDS YP_005278333.1 378713440 11777446 2778264..2779805 1 NC_016902.1 KEGG: sdy:SDY_1223 sodium/proton antiporter; TIGRFAM: Na+/H+ antiporter NhaB; PFAM: Na+H+ antiporter NhaB; Na+/H+ antiporter NhaB 2779805 11777446 EKO11_2670 Escherichia coli KO11FL Na+/H+ antiporter NhaB YP_005278333.1 2778264 D 595495 CDS YP_005278334.1 378713441 11777447 2779951..2780481 1 NC_016902.1 PFAM: Disulphide bond formation protein DsbB; KEGG: sfv:SFV_1192 disulfide bond formation protein B; disulfide bond formation protein DsbB 2780481 11777447 EKO11_2671 Escherichia coli KO11FL disulfide bond formation protein DsbB YP_005278334.1 2779951 D 595495 CDS YP_005278335.1 378713442 11777448 complement(2780527..2781795) 1 NC_016902.1 KEGG: ebd:ECBD_2438 DNA polymerase V subunit UmuC; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 2781795 11777448 EKO11_2672 Escherichia coli KO11FL DNA-directed DNA polymerase YP_005278335.1 2780527 R 595495 CDS YP_005278336.1 378713443 11777449 complement(2781795..2782214) 1 NC_016902.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: sbc:SbBS512_E1340 DNA polymerase V subunit UmuD; peptidase S24/S26A/S26B 2782214 11777449 EKO11_2673 Escherichia coli KO11FL peptidase S24/S26A/S26B YP_005278336.1 2781795 R 595495 CDS YP_005278337.1 378713444 11777451 complement(2783703..2784179) 1 NC_016902.1 KEGG: eok:G2583_1441 hypothetical protein; manually curated; PFAM: protein of unknown function UPF0153; hypothetical protein 2784179 11777451 EKO11_2675 Escherichia coli KO11FL hypothetical protein YP_005278337.1 2783703 R 595495 CDS YP_005278338.1 378713445 11777452 complement(2784241..2784900) 1 NC_016902.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sbc:SbBS512_E1335 hypothetical protein; fumarylacetoacetate (FAA) hydrolase 2784900 11777452 EKO11_2676 Escherichia coli KO11FL fumarylacetoacetate (FAA) hydrolase YP_005278338.1 2784241 R 595495 CDS YP_005278339.1 378713446 11777453 complement(2784972..2785298) 1 NC_016902.1 KEGG: sbo:SBO_1165 hypothetical protein; manually curated; PFAM: protein of unknown function DUF709; hypothetical protein 2785298 11777453 EKO11_2677 Escherichia coli KO11FL hypothetical protein YP_005278339.1 2784972 R 595495 CDS YP_005278340.1 378713447 11777454 2785507..2785908 1 NC_016902.1 PFAM: peptidase domain protein; KEGG: ssn:SSON_1167 hypothetical protein; peptidase domain-containing protein 2785908 11777454 EKO11_2678 Escherichia coli KO11FL peptidase domain-containing protein YP_005278340.1 2785507 D 595495 CDS YP_005278341.1 378713448 11777455 complement(2786028..2786396) 1 NC_016902.1 PFAM: Fels-1 Propage domain protein; KEGG: sbc:SbBS512_E1331 putative fels-1 prophage protein; Fels-1 Propage domain protein 2786396 11777455 EKO11_2679 Escherichia coli KO11FL Fels-1 Propage domain protein YP_005278341.1 2786028 R 595495 CDS YP_005278342.1 378713449 11777456 2786916..2787611 1 NC_016902.1 KEGG: sdy:SDY_1207 septum formation inhibitor; TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; septum site-determining protein MinC 2787611 11777456 EKO11_2680 Escherichia coli KO11FL septum site-determining protein MinC YP_005278342.1 2786916 D 595495 CDS YP_005278343.1 378713450 11777457 2787635..2788447 1 NC_016902.1 TIGRFAM: septum site-determining protein MinD; KEGG: sdy:SDY_1206 cell division inhibitor MinD; septum site-determining protein MinD 2788447 11777457 EKO11_2681 Escherichia coli KO11FL septum site-determining protein MinD YP_005278343.1 2787635 D 595495 CDS YP_005278344.1 378713451 11779581 2788451..2788717 1 NC_016902.1 KEGG: sdy:SDY_1205 cell division topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; cell division topological specificity factor MinE 2788717 11779581 EKO11_2682 Escherichia coli KO11FL cell division topological specificity factor MinE YP_005278344.1 2788451 D 595495 CDS YP_005278345.1 378713452 11777458 complement(2789089..2789532) 1 NC_016902.1 KEGG: eoh:ECO103_1274 hypothetical protein; manually curated; PFAM: Autotransporter beta- domain protein; Autotransporter beta domain-containing protein 2789532 11777458 EKO11_2683 Escherichia coli KO11FL Autotransporter beta domain-containing protein YP_005278345.1 2789089 R 595495 CDS YP_005278346.1 378713453 11777459 2789834..2790007 1 NC_016902.1 manually curated; KEGG: eok:G2583_1430 hypothetical protein; hypothetical protein 2790007 11777459 EKO11_2684 Escherichia coli KO11FL hypothetical protein YP_005278346.1 2789834 D 595495 CDS YP_005278347.1 378713454 11777460 2790069..2790353 1 NC_016902.1 KEGG: sbc:SbBS512_E1325 hypothetical protein; hypothetical protein 2790353 11777460 EKO11_2685 Escherichia coli KO11FL hypothetical protein YP_005278347.1 2790069 D 595495 CDS YP_005278348.1 378713455 11777461 2790363..2790692 1 NC_016902.1 KEGG: sbc:SbBS512_E1324 hypothetical protein; hypothetical protein 2790692 11777461 EKO11_2686 Escherichia coli KO11FL hypothetical protein YP_005278348.1 2790363 D 595495 CDS YP_005278349.1 378713456 11777462 complement(2793796..2794014) 1 NC_016902.1 KEGG: ebd:ECBD_2453 uncharacterized protein YmgF; hypothetical protein 2794014 11777462 EKO11_2688 Escherichia coli KO11FL hypothetical protein YP_005278349.1 2793796 R 595495 CDS YP_005278350.1 378713457 11777463 complement(2794146..2795669) 1 NC_016902.1 KEGG: eoh:ECO103_1269 hypothetical protein; PFAM: EAL domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase 2795669 11777463 EKO11_2689 Escherichia coli KO11FL diguanylate phosphodiesterase YP_005278350.1 2794146 R 595495 CDS YP_005278351.1 378713458 11779583 complement(2796001..2796249) 1 NC_016902.1 KEGG: ebd:ECBD_2455 uncharacterized protein YmgC; hypothetical protein 2796249 11779583 EKO11_2690 Escherichia coli KO11FL hypothetical protein YP_005278351.1 2796001 R 595495 CDS YP_005278352.1 378713459 11777464 complement(2796362..2796628) 1 NC_016902.1 KEGG: ebd:ECBD_2456 hypothetical protein; hypothetical protein 2796628 11777464 EKO11_2691 Escherichia coli KO11FL hypothetical protein YP_005278352.1 2796362 R 595495 CDS YP_005278353.1 378713460 11777465 complement(2796657..2796929) 1 NC_016902.1 manually curated; KEGG: eoh:ECO103_1266 hypothetical protein; hypothetical protein 2796929 11777465 EKO11_2692 Escherichia coli KO11FL hypothetical protein YP_005278353.1 2796657 R 595495 CDS YP_005278354.1 378713461 11777466 complement(2796972..2797208) 1 NC_016902.1 KEGG: eoh:ECO103_1265 hypothetical protein; hypothetical protein 2797208 11777466 EKO11_2693 Escherichia coli KO11FL hypothetical protein YP_005278354.1 2796972 R 595495 CDS YP_005278355.1 378713462 11777467 2797522..2798733 1 NC_016902.1 KEGG: eoh:ECO103_1264 putative FAD-binding phosphodiesterase; PFAM: EAL domain protein; BLUF domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase 2798733 11777467 EKO11_2694 Escherichia coli KO11FL diguanylate phosphodiesterase YP_005278355.1 2797522 D 595495 CDS YP_005278356.1 378713463 11779584 2798938..2799669 1 NC_016902.1 KEGG: sbc:SbBS512_E1317 transcriptional regulator MlrA; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 2799669 11779584 EKO11_2695 Escherichia coli KO11FL MerR family transcriptional regulator YP_005278356.1 2798938 D 595495 CDS YP_005278357.1 378713464 11777468 2799890..2800294 1 NC_016902.1 PFAM: protein of unknown function DUF1398; KEGG: ebd:ECBD_2461 protein of unknown function DUF1398; hypothetical protein 2800294 11777468 EKO11_2696 Escherichia coli KO11FL hypothetical protein YP_005278357.1 2799890 D 595495 CDS YP_005278358.1 378713465 11777469 2800990..2801313 1 NC_016902.1 manually curated; KEGG: eoh:ECO103_1261 hypothetical protein; hypothetical protein 2801313 11777469 EKO11_2697 Escherichia coli KO11FL hypothetical protein YP_005278358.1 2800990 D 595495 CDS YP_005278359.1 378713466 11777470 complement(2801416..2802666) 1 NC_016902.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: sfv:SFV_1171 isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase 2802666 11777470 EKO11_2698 Escherichia coli KO11FL isocitrate dehydrogenase YP_005278359.1 2801416 R 595495 CDS YP_005278360.1 378713467 11777471 2802838..2803491 1 NC_016902.1 PFAM: pseudouridine synthase; KEGG: eoh:ECO103_1259 23S rRNA pseudouridine synthase E; pseudouridine synthase 2803491 11777471 EKO11_2699 Escherichia coli KO11FL pseudouridine synthase YP_005278360.1 2802838 D 595495 CDS YP_005278361.1 378713468 11777472 2803501..2803962 1 NC_016902.1 PFAM: NUDIX hydrolase; KEGG: sdy:SDY_2018 putative phosphohydrolase; NUDIX hydrolase 2803962 11777472 EKO11_2700 Escherichia coli KO11FL NUDIX hydrolase YP_005278361.1 2803501 D 595495 CDS YP_005278362.1 378713469 11779585 2804016..2805122 1 NC_016902.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: ebd:ECBD_2466 tRNA-specific 2-thiouridylase MnmA; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 2805122 11779585 EKO11_2701 Escherichia coli KO11FL tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase YP_005278362.1 2804016 D 595495 CDS YP_005278363.1 378713470 11777473 2805158..2805799 1 NC_016902.1 PFAM: protein of unknown function DUF489; KEGG: sdy:SDY_2020 hypothetical protein; hypothetical protein 2805799 11777473 EKO11_2702 Escherichia coli KO11FL hypothetical protein YP_005278363.1 2805158 D 595495 CDS YP_005278364.1 378713471 11777474 2805803..2807173 1 NC_016902.1 KEGG: sbc:SbBS512_E1309 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase domain-containing protein; adenylosuccinate lyase 2807173 11777474 EKO11_2703 Escherichia coli KO11FL adenylosuccinate lyase YP_005278364.1 2805803 D 595495 CDS YP_005278365.1 378713472 11777475 2807341..2808012 1 NC_016902.1 KEGG: sdy:SDY_2022 DNA-binding transcriptional regulator PhoP; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 2808012 11777475 EKO11_2704 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005278365.1 2807341 D 595495 CDS YP_005278366.1 378713473 11777476 2808012..2809472 1 NC_016902.1 KEGG: sbc:SbBS512_E1307 sensor protein PhoQ; PFAM: PhoQ Sensor domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; integral membrane sensor signal transduction histidine kinase 2809472 11777476 EKO11_2705 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005278366.1 2808012 D 595495 CDS YP_005278367.1 378713474 11777477 2809548..2810669 1 NC_016902.1 SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: eoh:ECO103_1235 putative cytoplasmic protein; transcription factor jumonji jmjC domain-containing protein 2810669 11777477 EKO11_2706 Escherichia coli KO11FL transcription factor jumonji jmjC domain-containing protein YP_005278367.1 2809548 D 595495 CDS YP_005278368.1 378713475 11777478 complement(2810815..2812044) 1 NC_016902.1 TIGRFAM: peptidase T; KEGG: eoi:ECO111_1475 peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20; peptidase T 2812044 11777478 EKO11_2707 Escherichia coli KO11FL peptidase T YP_005278368.1 2810815 R 595495 CDS YP_005278369.1 378713476 11777479 2812294..2813430 1 NC_016902.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; KEGG: sfx:S1208 putrescine/spermidine ABC transporter ATPase protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 2813430 11777479 EKO11_2708 Escherichia coli KO11FL spermidine/putrescine ABC transporter ATPase YP_005278369.1 2812294 D 595495 CDS YP_005278370.1 378713477 11777480 2813414..2814271 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1143 spermidine/putrescine ABC transporter membrane protein; binding-protein-dependent transport system inner membrane protein 2814271 11777480 EKO11_2709 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278370.1 2813414 D 595495 CDS YP_005278371.1 378713478 11779586 2814268..2815062 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2201 spermidine/putrescine ABC transporter membrane protein; binding-protein-dependent transport system inner membrane protein 2815062 11779586 EKO11_2710 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278371.1 2814268 D 595495 CDS YP_005278372.1 378713479 11777481 2815059..2816105 1 NC_016902.1 PFAM: extracellular solute-binding protein family 1; KEGG: eoh:ECO103_1168 spermidine/putrescine ABC transporter periplasmic substrate-binding protein; extracellular solute-binding protein 2816105 11777481 EKO11_2711 Escherichia coli KO11FL extracellular solute-binding protein YP_005278372.1 2815059 D 595495 CDS YP_005278373.1 378713480 11777482 2816163..2816624 1 NC_016902.1 KEGG: eoh:ECO103_1167 putative inner membrane protein; putative inner membrane protein 2816624 11777482 EKO11_2712 Escherichia coli KO11FL putative inner membrane protein YP_005278373.1 2816163 D 595495 CDS YP_005278374.1 378713481 11777483 2816621..2817409 1 NC_016902.1 KEGG: eoh:ECO103_1166 putative inner membrane protein; putative inner membrane protein 2817409 11777483 EKO11_2713 Escherichia coli KO11FL putative inner membrane protein YP_005278374.1 2816621 D 595495 CDS YP_005278375.1 378713482 11777484 complement(2817548..2818369) 1 NC_016902.1 PFAM: Silent information regulator protein Sir2; KEGG: sbo:SBO_1941 NAD-dependent deacetylase; silent information regulator protein Sir2 2818369 11777484 EKO11_2714 Escherichia coli KO11FL silent information regulator protein Sir2 YP_005278375.1 2817548 R 595495 CDS YP_005278376.1 378713483 11777485 complement(2818385..2819296) 1 NC_016902.1 PFAM: ROK family protein; KEGG: sdy:SDY_2031 N-acetyl-D-glucosamine kinase; ROK family protein 2819296 11777485 EKO11_2715 Escherichia coli KO11FL ROK family protein YP_005278376.1 2818385 R 595495 CDS YP_005278377.1 378713484 11777486 complement(2819325..2820563) 1 NC_016902.1 KEGG: eoh:ECO103_1163 outer membrane-specific lipoprotein transporter subunit LolE; TIGRFAM: lipoprotein releasing system, transmembrane protein LolE; lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; lipoprotein releasing system, transmembrane protein LolE 2820563 11777486 EKO11_2716 Escherichia coli KO11FL lipoprotein releasing system, transmembrane protein LolE YP_005278377.1 2819325 R 595495 CDS YP_005278378.1 378713485 11777487 complement(2820569..2821270) 1 NC_016902.1 TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; KEGG: sbc:SbBS512_E2206 lipoprotein transporter ATP-binding subunit; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 2821270 11777487 EKO11_2717 Escherichia coli KO11FL lipoprotein releasing system, ATP-binding protein YP_005278378.1 2820569 R 595495 CDS YP_005278379.1 378713486 11777488 complement(2821263..2822462) 1 NC_016902.1 KEGG: eoh:ECO103_1161 outer membrane-specific lipoprotein transporter subunit LolC; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; lipoprotein releasing system transmembrane protein LolC/E family 2822462 11777488 EKO11_2718 Escherichia coli KO11FL lipoprotein releasing system transmembrane protein LolC/E family YP_005278379.1 2821263 R 595495 CDS YP_005278380.1 378713487 11777489 2822724..2823797 1 NC_016902.1 PFAM: acyltransferase 3; KEGG: ebw:BWG_0963 putative inner membrane protein; acyltransferase 3 2823797 11777489 EKO11_2719 Escherichia coli KO11FL acyltransferase 3 YP_005278380.1 2822724 D 595495 CDS YP_005278381.1 378713488 11777490 2823877..2827371 1 NC_016902.1 TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: sfv:SFV_1134 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor 2827371 11777490 EKO11_2720 Escherichia coli KO11FL transcription-repair coupling factor YP_005278381.1 2823877 D 595495 CDS YP_005278382.1 378713489 11779587 2827518..2828477 1 NC_016902.1 KEGG: eoh:ECO103_1158 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein 2828477 11779587 EKO11_2721 Escherichia coli KO11FL ErfK/YbiS/YcfS/YnhG family protein YP_005278382.1 2827518 D 595495 CDS YP_005278383.1 378713490 11777491 complement(2828560..2828817) 1 NC_016902.1 PFAM: protein of unknown function DUF1471; KEGG: sdy:SDY_2038 hypothetical protein; hypothetical protein 2828817 11777491 EKO11_2722 Escherichia coli KO11FL hypothetical protein YP_005278383.1 2828560 R 595495 CDS YP_005278384.1 378713491 11777492 2828995..2829690 1 NC_016902.1 PFAM: regulatory protein TetR; KEGG: sdy:SDY_2039 hypothetical protein; TetR family transcriptional regulator 2829690 11777492 EKO11_2723 Escherichia coli KO11FL TetR family transcriptional regulator YP_005278384.1 2828995 D 595495 CDS YP_005278385.1 378713492 11777493 complement(2829752..2830291) 1 NC_016902.1 KEGG: sdy:SDY_2040 hypothetical protein; hypothetical protein 2830291 11777493 EKO11_2724 Escherichia coli KO11FL hypothetical protein YP_005278385.1 2829752 R 595495 CDS YP_005278386.1 378713493 11777494 complement(2830501..2831805) 1 NC_016902.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eoi:ECO111_1386 respiratory NADH dehydrogenase 2/cupric reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2831805 11777494 EKO11_2725 Escherichia coli KO11FL FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005278386.1 2830501 R 595495 CDS YP_005278387.1 378713494 11777495 complement(2832213..2832755) 1 NC_016902.1 PFAM: protein of unknown function UPF0227; KEGG: sdy:SDY_2042 hypothetical protein; hypothetical protein 2832755 11777495 EKO11_2726 Escherichia coli KO11FL hypothetical protein YP_005278387.1 2832213 R 595495 CDS YP_005278388.1 378713495 11777496 complement(2832778..2833803) 1 NC_016902.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: eoi:ECO111_1384 beta-hexosaminidase; glycoside hydrolase family protein 2833803 11777496 EKO11_2727 Escherichia coli KO11FL glycoside hydrolase family protein YP_005278388.1 2832778 R 595495 CDS YP_005278389.1 378713496 11777497 complement(2833814..2834638) 1 NC_016902.1 TIGRFAM: thiamine kinase; KEGG: eoh:ECO103_1151 thiamine kinase; PFAM: aminoglycoside phosphotransferase; thiamine kinase 2834638 11777497 EKO11_2728 Escherichia coli KO11FL thiamine kinase YP_005278389.1 2833814 R 595495 CDS YP_005278390.1 378713497 11777498 complement(2834619..2835260) 1 NC_016902.1 TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: sdy:SDY_2045 hypothetical protein; membrane lipoprotein lipid attachment site 2835260 11777498 EKO11_2729 Escherichia coli KO11FL membrane lipoprotein lipid attachment site YP_005278390.1 2834619 R 595495 CDS YP_005278391.1 378713498 11777499 complement(2835274..2835651) 1 NC_016902.1 PFAM: protein of unknown function DUF1425; KEGG: eok:G2583_1364 putative outer membrane lipoprotein YcfL; hypothetical protein 2835651 11777499 EKO11_2730 Escherichia coli KO11FL hypothetical protein YP_005278391.1 2835274 R 595495 CDS YP_005278392.1 378713499 11777500 complement(2835654..2836013) 1 NC_016902.1 PFAM: histidine triad (HIT) protein; KEGG: eok:G2583_1363 hypothetical protein; histidine triad (HIT) protein 2836013 11777500 EKO11_2731 Escherichia coli KO11FL histidine triad (HIT) protein YP_005278392.1 2835654 R 595495 CDS YP_005278393.1 378713500 11777501 2836347..2838536 1 NC_016902.1 KEGG: eoh:ECO103_1147 ferric-rhodotorulic acid outer membrane transporter; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; TonB-dependent siderophore receptor 2838536 11777501 EKO11_2732 Escherichia coli KO11FL TonB-dependent siderophore receptor YP_005278393.1 2836347 D 595495 CDS YP_005278394.1 378713501 11777502 complement(2838596..2840029) 1 NC_016902.1 TIGRFAM: PTS system, glucose-specific IIBC subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-like IIB subunint; KEGG: sdy:SDY_2049 glucose-specific PTS system IIBC components; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; PTS system glucose-specific transporter subunit IIBC 2840029 11777502 EKO11_2733 Escherichia coli KO11FL PTS system glucose-specific transporter subunit IIBC YP_005278394.1 2838596 R 595495 CDS YP_005278395.1 378713502 11777503 complement(2840324..2841121) 1 NC_016902.1 KEGG: sdy:SDY_2050 putative metallodependent hydrolase; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase 2841121 11777503 EKO11_2734 Escherichia coli KO11FL TatD family hydrolase YP_005278395.1 2840324 R 595495 CDS YP_005278396.1 378713503 11777504 complement(2841132..2842136) 1 NC_016902.1 KEGG: ebd:ECBD_2502 DNA polymerase III subunit delta'; TIGRFAM: DNA polymerase III, delta prime subunit; PFAM: DNA polymerase III delta subunit; DNA polymerase III subunit delta' 2842136 11777504 EKO11_2735 Escherichia coli KO11FL DNA polymerase III subunit delta' YP_005278396.1 2841132 R 595495 CDS YP_005278397.1 378713504 11777505 complement(2842133..2842774) 1 NC_016902.1 TIGRFAM: thymidylate kinase; KEGG: sdy:SDY_2052 thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 2842774 11777505 EKO11_2736 Escherichia coli KO11FL thymidylate kinase YP_005278397.1 2842133 R 595495 CDS YP_005278398.1 378713505 11777506 complement(2842764..2843786) 1 NC_016902.1 PFAM: aminodeoxychorismate lyase; KEGG: sbc:SbBS512_E2227 hypothetical protein; aminodeoxychorismate lyase 2843786 11777506 EKO11_2737 Escherichia coli KO11FL aminodeoxychorismate lyase YP_005278398.1 2842764 R 595495 CDS YP_005278399.1 378713506 11777507 complement(2843789..2844598) 1 NC_016902.1 KEGG: ebd:ECBD_2505 4-amino-4-deoxychorismate lyase; TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV; aminodeoxychorismate lyase 2844598 11777507 EKO11_2738 Escherichia coli KO11FL aminodeoxychorismate lyase YP_005278399.1 2843789 R 595495 CDS YP_005278400.1 378713507 11777508 complement(2844718..2845959) 1 NC_016902.1 KEGG: sfv:SFV_1115 3-oxoacyl-(acyl carrier protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; 3-oxoacyl-(acyl-carrier-protein) synthase 2 2845959 11777508 EKO11_2739 Escherichia coli KO11FL 3-oxoacyl-(acyl-carrier-protein) synthase 2 YP_005278400.1 2844718 R 595495 CDS YP_005278401.1 378713508 11777510 complement(2846494..2847228) 1 NC_016902.1 KEGG: sbc:SbBS512_E2231 3-ketoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; 3-oxoacyl-(acyl-carrier-protein) reductase 2847228 11777510 EKO11_2741 Escherichia coli KO11FL 3-oxoacyl-(acyl-carrier-protein) reductase YP_005278401.1 2846494 R 595495 CDS YP_005278402.1 378713509 11779588 complement(2847241..2848170) 1 NC_016902.1 KEGG: sbc:SbBS512_E2232 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase 2848170 11779588 EKO11_2742 Escherichia coli KO11FL malonyl CoA-acyl carrier protein transacylase YP_005278402.1 2847241 R 595495 CDS YP_005278403.1 378713510 11777511 complement(2848186..2849139) 1 NC_016902.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: sbc:SbBS512_E2233 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 2849139 11777511 EKO11_2743 Escherichia coli KO11FL 3-oxoacyl-(acyl-carrier-protein) synthase III YP_005278403.1 2848186 R 595495 CDS YP_005278404.1 378713511 11777512 complement(2849207..2850247) 1 NC_016902.1 KEGG: ssn:SSON_1110 putative glycerol-3-phosphate acyltransferase PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; fatty acid/phospholipid synthesis protein PlsX 2850247 11777512 EKO11_2744 Escherichia coli KO11FL fatty acid/phospholipid synthesis protein PlsX YP_005278404.1 2849207 R 595495 CDS YP_005278405.1 378713512 11777513 complement(2850358..2850531) 1 NC_016902.1 KEGG: cro:ROD_11511 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; 50S ribosomal protein L32 2850531 11777513 EKO11_2745 Escherichia coli KO11FL 50S ribosomal protein L32 YP_005278405.1 2850358 R 595495 CDS YP_005278406.1 378713513 11777514 complement(2850583..2851104) 1 NC_016902.1 PFAM: protein of unknown function DUF177; KEGG: sdy:SDY_2062 hypothetical protein; hypothetical protein 2851104 11777514 EKO11_2746 Escherichia coli KO11FL hypothetical protein YP_005278406.1 2850583 R 595495 CDS YP_005278407.1 378713514 11777515 2851264..2851887 1 NC_016902.1 KEGG: sfv:SFV_1108 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 2851887 11777515 EKO11_2747 Escherichia coli KO11FL maf protein YP_005278407.1 2851264 D 595495 CDS YP_005278408.1 378713515 11777516 complement(2851999..2852958) 1 NC_016902.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: sfx:S1170 23S rRNA pseudouridylate synthase C; SMART: RNA-binding S4 domain protein; RluA family pseudouridine synthase 2852958 11777516 EKO11_2748 Escherichia coli KO11FL RluA family pseudouridine synthase YP_005278408.1 2851999 R 595495 CDS YP_005278409.1 378713516 11777517 2853531..2856716 1 NC_016902.1 KEGG: eoi:ECO111_1361 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; Polyribonucleotide phosphorylase-like; ribonuclease, Rne/Rng family 2856716 11777517 EKO11_2749 Escherichia coli KO11FL ribonuclease, Rne/Rng family YP_005278409.1 2853531 D 595495 CDS YP_005278410.1 378713517 11777518 complement(2856913..2857866) 1 NC_016902.1 KEGG: eoh:ECO103_1128 flagellar hook-associated protein FlgL; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; flagellar hook-associated protein 3 2857866 11777518 EKO11_2750 Escherichia coli KO11FL flagellar hook-associated protein 3 YP_005278410.1 2856913 R 595495 CDS YP_005278411.1 378713518 11779589 complement(2857878..2859521) 1 NC_016902.1 KEGG: ebd:ECBD_2518 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar hook-associated protein FlgK 2859521 11779589 EKO11_2751 Escherichia coli KO11FL flagellar hook-associated protein FlgK YP_005278411.1 2857878 R 595495 CDS YP_005278412.1 378713519 11777519 complement(2859587..2860528) 1 NC_016902.1 TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ-like; KEGG: ssn:SSON_1101 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ 2860528 11777519 EKO11_2752 Escherichia coli KO11FL flagellar rod assembly protein/muramidase FlgJ YP_005278412.1 2859587 R 595495 CDS YP_005278413.1 378713520 11777520 complement(2860528..2861625) 1 NC_016902.1 PFAM: flagellar P-ring protein; KEGG: eok:G2583_1339 flagellar basal body P-ring protein; flagellar P-ring protein 2861625 11777520 EKO11_2753 Escherichia coli KO11FL flagellar P-ring protein YP_005278413.1 2860528 R 595495 CDS YP_005278414.1 378713521 11779590 complement(2861637..2862335) 1 NC_016902.1 PFAM: flagellar L-ring protein; KEGG: ssn:SSON_1099 flagellar basal body L-ring protein; flagellar L-ring protein 2862335 11779590 EKO11_2754 Escherichia coli KO11FL flagellar L-ring protein YP_005278414.1 2861637 R 595495 CDS YP_005278415.1 378713522 11777521 complement(2862388..2863170) 1 NC_016902.1 KEGG: sfv:SFV_1100 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgG 2863170 11777521 EKO11_2755 Escherichia coli KO11FL flagellar basal-body rod protein FlgG YP_005278415.1 2862388 R 595495 CDS YP_005278416.1 378713523 11777522 complement(2863342..2864097) 1 NC_016902.1 KEGG: sfv:SFV_1099 flagellar basal body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal-body rod protein FlgF 2864097 11777522 EKO11_2756 Escherichia coli KO11FL flagellar basal-body rod protein FlgF YP_005278416.1 2863342 R 595495 CDS YP_005278417.1 378713524 11777523 complement(2864117..2865325) 1 NC_016902.1 KEGG: ebw:BWG_0924 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; fagellar hook-basal body protein 2865325 11777523 EKO11_2757 Escherichia coli KO11FL fagellar hook-basal body protein YP_005278417.1 2864117 R 595495 CDS YP_005278418.1 378713525 11777524 complement(2865350..2866045) 1 NC_016902.1 PFAM: flagellar hook capping protein; KEGG: eok:G2583_1334 flagellar hook protein FlgE; flagellar hook capping protein 2866045 11777524 EKO11_2758 Escherichia coli KO11FL flagellar hook capping protein YP_005278418.1 2865350 R 595495 CDS YP_005278419.1 378713526 11777525 complement(2866057..2866461) 1 NC_016902.1 KEGG: sbc:SbBS512_E2251 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal-body rod protein FlgC 2866461 11777525 EKO11_2759 Escherichia coli KO11FL flagellar basal-body rod protein FlgC YP_005278419.1 2866057 R 595495 CDS YP_005278420.1 378713527 11777526 complement(2866465..2866881) 1 NC_016902.1 KEGG: sbc:SbBS512_E2252 flagellar basal body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; flagellar basal-body rod protein FlgB 2866881 11777526 EKO11_2760 Escherichia coli KO11FL flagellar basal-body rod protein FlgB YP_005278420.1 2866465 R 595495 CDS YP_005278421.1 378713528 11779591 2867037..2867696 1 NC_016902.1 KEGG: eok:G2583_1331 flagellar biosynthesis; TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; flagella basal body P-ring formation protein FlgA 2867696 11779591 EKO11_2761 Escherichia coli KO11FL flagella basal body P-ring formation protein FlgA YP_005278421.1 2867037 D 595495 CDS YP_005278422.1 378713529 11777527 2867772..2868065 1 NC_016902.1 KEGG: sdy:SDY_2081 anti-sigma28 factor FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein; anti-sigma-28 factor FlgM 2868065 11777527 EKO11_2762 Escherichia coli KO11FL anti-sigma-28 factor FlgM YP_005278422.1 2867772 D 595495 CDS YP_005278423.1 378713530 11779592 2868070..2868486 1 NC_016902.1 PFAM: FlgN family protein; KEGG: sbc:SbBS512_E2256 flagella synthesis protein FlgN; FlgN family protein 2868486 11779592 EKO11_2763 Escherichia coli KO11FL FlgN family protein YP_005278423.1 2868070 D 595495 CDS YP_005278424.1 378713531 11777528 complement(2868526..2870061) 1 NC_016902.1 KEGG: sbc:SbBS512_E2257 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; integral membrane protein MviN 2870061 11777528 EKO11_2764 Escherichia coli KO11FL integral membrane protein MviN YP_005278424.1 2868526 R 595495 CDS YP_005278425.1 378713532 11777529 complement(2870171..2871094) 1 NC_016902.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ebd:ECBD_2532 virulence factor MviM-like protein; oxidoreductase domain-containing protein 2871094 11777529 EKO11_2765 Escherichia coli KO11FL oxidoreductase domain-containing protein YP_005278425.1 2870171 R 595495 CDS YP_005278426.1 378713533 11779593 complement(2871096..2871743) 1 NC_016902.1 PFAM: protein of unknown function DUF480; KEGG: ssn:SSON_1087 hypothetical protein; hypothetical protein 2871743 11779593 EKO11_2766 Escherichia coli KO11FL hypothetical protein YP_005278426.1 2871096 R 595495 CDS YP_005278427.1 378713534 11777530 complement(2871754..2872338) 1 NC_016902.1 KEGG: sbc:SbBS512_E2260 ribosomal-protein-S5-alanine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; Ribosomal-protein-alanine N-acetyltransferase 2872338 11777530 EKO11_2767 Escherichia coli KO11FL Ribosomal-protein-alanine N-acetyltransferase YP_005278427.1 2871754 R 595495 CDS YP_005278428.1 378713535 11777531 2872574..2873782 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E2261 multidrug resistance protein MdtH; major facilitator superfamily protein 2873782 11777531 EKO11_2768 Escherichia coli KO11FL major facilitator superfamily protein YP_005278428.1 2872574 D 595495 CDS YP_005278429.1 378713536 11777532 2873846..2874493 1 NC_016902.1 KEGG: sbc:SbBS512_E2262 glutaredoxin 2; TIGRFAM: glutaredoxin, GrxB family; PFAM: glutaredoxin 2 domain protein; Glutathione S-transferase domain; GrxB family glutaredoxin 2874493 11777532 EKO11_2769 Escherichia coli KO11FL GrxB family glutaredoxin YP_005278429.1 2873846 D 595495 CDS YP_005278430.1 378713537 11777533 2874627..2875187 1 NC_016902.1 KEGG: sbc:SbBS512_E2264 hypothetical protein; hypothetical protein 2875187 11777533 EKO11_2770 Escherichia coli KO11FL hypothetical protein YP_005278430.1 2874627 D 595495 CDS YP_005278431.1 378713538 11777534 2875293..2876339 1 NC_016902.1 TIGRFAM: dihydroorotase, homodimeric type; KEGG: eoh:ECO103_1107 dihydroorotase; PFAM: amidohydrolase; dihydroorotase, homodimeric type 2876339 11777534 EKO11_2771 Escherichia coli KO11FL dihydroorotase, homodimeric type YP_005278431.1 2875293 D 595495 CDS YP_005278432.1 378713539 11777535 2876413..2876658 1 NC_016902.1 PFAM: DinI family protein; KEGG: ssn:SSON_1081 DNA damage-inducible protein I; DinI family protein 2876658 11777535 EKO11_2772 Escherichia coli KO11FL DinI family protein YP_005278432.1 2876413 D 595495 CDS YP_005278433.1 378713540 11779594 2876948..2877202 1 NC_016902.1 KEGG: sbc:SbBS512_E2267 biofilm formation regulatory protein BssS; biofilm formation regulatory protein BssS 2877202 11779594 EKO11_2773 Escherichia coli KO11FL biofilm formation regulatory protein BssS YP_005278433.1 2876948 D 595495 CDS YP_005278434.1 378713541 11777536 2877317..2878435 1 NC_016902.1 KEGG: sbc:SbBS512_E2268 N-methyltryptophan oxidase; PFAM: FAD dependent oxidoreductase; sarcosine oxidase 2878435 11777536 EKO11_2774 Escherichia coli KO11FL sarcosine oxidase YP_005278434.1 2877317 D 595495 CDS YP_005278435.1 378713542 11777537 2878483..2878596 1 NC_016902.1 KEGG: sdy:SDY_2097 hypothetical protein; hypothetical protein 2878596 11777537 EKO11_2775 Escherichia coli KO11FL hypothetical protein YP_005278435.1 2878483 D 595495 CDS YP_005278436.1 378713543 11777538 2878782..2879423 1 NC_016902.1 manually curated; KEGG: sfv:SFV_1080 putative cytochrome; putative cytochrome 2879423 11777538 EKO11_2776 Escherichia coli KO11FL putative cytochrome YP_005278436.1 2878782 D 595495 CDS YP_005278437.1 378713544 11777539 2879427..2880002 1 NC_016902.1 PFAM: YceI family protein; KEGG: sbc:SbBS512_E2272 hypothetical protein; hypothetical protein 2880002 11777539 EKO11_2777 Escherichia coli KO11FL hypothetical protein YP_005278437.1 2879427 D 595495 CDS YP_005278438.1 378713545 11779595 complement(2880044..2881096) 1 NC_016902.1 KEGG: sfv:SFV_1078 hypothetical protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 2881096 11779595 EKO11_2778 Escherichia coli KO11FL Rhodanese domain-containing protein YP_005278438.1 2880044 R 595495 CDS YP_005278439.1 378713546 11777540 2881321..2882241 1 NC_016902.1 KEGG: sbc:SbBS512_E2276 lipid A biosynthesis lauroyl acyltransferase; TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 2882241 11777540 EKO11_2779 Escherichia coli KO11FL lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_005278439.1 2881321 D 595495 CDS YP_005278440.1 378713547 11777541 2882413..2883639 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: ebd:ECBD_2547 drug efflux system protein MdtG; major facilitator superfamily protein 2883639 11777541 EKO11_2780 Escherichia coli KO11FL major facilitator superfamily protein YP_005278440.1 2882413 D 595495 CDS YP_005278441.1 378713548 11777542 2883722..2884096 1 NC_016902.1 KEGG: sdy:SDY_2299 hypothetical protein; hypothetical protein 2884096 11777542 EKO11_2781 Escherichia coli KO11FL hypothetical protein YP_005278441.1 2883722 D 595495 CDS YP_005278442.1 378713549 11777543 complement(2884097..2884324) 1 NC_016902.1 PFAM: protein of unknown function DUF1375; KEGG: ssn:SSON_1064 hypothetical protein; hypothetical protein 2884324 11777543 EKO11_2782 Escherichia coli KO11FL hypothetical protein YP_005278442.1 2884097 R 595495 CDS YP_005278443.1 378713550 11777545 complement(2884497..2887040) 1 NC_016902.1 KEGG: ssn:SSON_1062 glucosyltransferase MdoH; manually curated; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase 2887040 11777545 EKO11_2784 Escherichia coli KO11FL family 2 glycosyl transferase YP_005278443.1 2884497 R 595495 CDS YP_005278444.1 378713551 11779596 complement(2887033..2888568) 1 NC_016902.1 PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: sbc:SbBS512_E2282 glucan biosynthesis protein G; periplasmic glucan biosynthesis protein MdoG 2888568 11779596 EKO11_2785 Escherichia coli KO11FL periplasmic glucan biosynthesis protein MdoG YP_005278444.1 2887033 R 595495 CDS YP_005278445.1 378713552 11777546 2888962..2890119 1 NC_016902.1 PFAM: acyltransferase 3; KEGG: ssn:SSON_1060 glucans biosynthesis protein; acyltransferase 3 2890119 11777546 EKO11_2786 Escherichia coli KO11FL acyltransferase 3 YP_005278445.1 2888962 D 595495 CDS YP_005278446.1 378713553 11777547 complement(2890127..2891608) 1 NC_016902.1 KEGG: ebd:ECBD_2553 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; phospholipase D/Transphosphatidylase 2891608 11777547 EKO11_2787 Escherichia coli KO11FL phospholipase D/Transphosphatidylase YP_005278446.1 2890127 R 595495 CDS YP_005278447.1 378713554 11777548 complement(2891550..2892083) 1 NC_016902.1 KEGG: eoh:ECO103_1091 hypothetical protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; Appr-1-p processing protein 2892083 11777548 EKO11_2788 Escherichia coli KO11FL Appr-1-p processing protein YP_005278447.1 2891550 R 595495 CDS YP_005278448.1 378713555 11777549 complement(2892178..2892489) 1 NC_016902.1 KEGG: eoh:ECO103_1090 hypothetical protein; hypothetical protein 2892489 11777549 EKO11_2789 Escherichia coli KO11FL hypothetical protein YP_005278448.1 2892178 R 595495 CDS YP_005278449.1 378713556 11777550 complement(2892610..2892942) 1 NC_016902.1 PFAM: Curli production protein CsgC; KEGG: eoh:ECO103_1089 putative autoagglutination protein; Curli production protein CsgC 2892942 11777550 EKO11_2790 Escherichia coli KO11FL Curli production protein CsgC YP_005278449.1 2892610 R 595495 CDS YP_005278450.1 378713557 11777551 complement(2893001..2893456) 1 NC_016902.1 PFAM: Curlin associated repeat-containing protein; KEGG: sbo:SBO_2026 cryptic curlin major subunit; curlin associated repeat-containing protein 2893456 11777551 EKO11_2791 Escherichia coli KO11FL curlin associated repeat-containing protein YP_005278450.1 2893001 R 595495 CDS YP_005278451.1 378713558 11777552 complement(2893497..2893952) 1 NC_016902.1 PFAM: Curlin associated repeat-containing protein; KEGG: ebd:ECBD_2558 curlin minor subunit; curlin associated repeat-containing protein 2893952 11777552 EKO11_2792 Escherichia coli KO11FL curlin associated repeat-containing protein YP_005278451.1 2893497 R 595495 CDS YP_005278452.1 378713559 11777553 2894706..2895356 1 NC_016902.1 KEGG: sfv:SFV_1051 DNA-binding transcriptional regulator CsgD; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 2895356 11777553 EKO11_2793 Escherichia coli KO11FL LuxR family transcriptional regulator YP_005278452.1 2894706 D 595495 CDS YP_005278453.1 378713560 11777554 2895361..2895750 1 NC_016902.1 PFAM: Curli assembly protein CsgE; KEGG: ssn:SSON_1048 curli assembly protein CsgE; curli assembly protein CsgE 2895750 11777554 EKO11_2794 Escherichia coli KO11FL curli assembly protein CsgE YP_005278453.1 2895361 D 595495 CDS YP_005278454.1 378713561 11777555 2895775..2896191 1 NC_016902.1 PFAM: Curli production assembly/transport component CsgF; KEGG: ssn:SSON_1047 curli assembly protein CsgF; curli production assembly/transport component CsgF 2896191 11777555 EKO11_2795 Escherichia coli KO11FL curli production assembly/transport component CsgF YP_005278454.1 2895775 D 595495 CDS YP_005278455.1 378713562 11777556 2896218..2897051 1 NC_016902.1 PFAM: Curli production assembly/transport component CsgG; KEGG: ebd:ECBD_2562 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG 2897051 11777556 EKO11_2796 Escherichia coli KO11FL curli production assembly/transport component CsgG YP_005278455.1 2896218 D 595495 CDS YP_005278456.1 378713563 11777557 complement(2897115..2897636) 1 NC_016902.1 PFAM: protein of unknown function DUF1097; KEGG: sbo:SBO_2032 hypothetical protein; hypothetical protein 2897636 11777557 EKO11_2797 Escherichia coli KO11FL hypothetical protein YP_005278456.1 2897115 R 595495 CDS YP_005278457.1 378713564 11777558 complement(2897708..2898262) 1 NC_016902.1 KEGG: sbc:SbBS512_E2294 chaperone, TorD family; chaperone, TorD family 2898262 11777558 EKO11_2798 Escherichia coli KO11FL chaperone, TorD family YP_005278457.1 2897708 R 595495 CDS YP_005278458.1 378713565 11777559 complement(2898286..2899023) 1 NC_016902.1 KEGG: sbc:SbBS512_E2295 putative hydrolase; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; PHP domain-containing protein 2899023 11777559 EKO11_2799 Escherichia coli KO11FL PHP domain-containing protein YP_005278458.1 2898286 R 595495 CDS YP_005278459.1 378713566 11777560 complement(2899078..2900016) 1 NC_016902.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ssn:SSON_1042 putative dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 2900016 11777560 EKO11_2800 Escherichia coli KO11FL D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_005278459.1 2899078 R 595495 CDS YP_005278460.1 378713567 11777562 complement(2901254..2902240) 1 NC_016902.1 KEGG: eoh:ECO103_1077 putative inner membrane protein; putative inner membrane protein 2902240 11777562 EKO11_2801 Escherichia coli KO11FL putative inner membrane protein YP_005278460.1 2901254 R 595495 CDS YP_005278461.1 378713568 11777563 complement(2902237..2902728) 1 NC_016902.1 KEGG: eok:G2583_1288 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 2902728 11777563 EKO11_2802 Escherichia coli KO11FL malonyl CoA-acyl carrier protein transacylase YP_005278461.1 2902237 R 595495 CDS YP_005278462.1 378713569 11777564 2902831..2903130 1 NC_016902.1 PFAM: transposase IS3/IS911 family protein; KEGG: cro:ROD_49861 IS3 transposase A; transposase IS3/IS911 family protein 2903130 11777564 EKO11_2803 Escherichia coli KO11FL transposase IS3/IS911 family protein YP_005278462.1 2902831 D 595495 CDS YP_005278463.1 378713570 11777565 2903127..2903993 1 NC_016902.1 PFAM: Integrase catalytic region; KEGG: cro:ROD_49871 IS3 transposase B; integrase catalytic subunit 2903993 11777565 EKO11_2804 Escherichia coli KO11FL integrase catalytic subunit YP_005278463.1 2903127 D 595495 CDS YP_005278464.1 378713571 11777566 complement(2904034..2905392) 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eoh:ECO103_1072 putative diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 2905392 11777566 EKO11_2805 Escherichia coli KO11FL diguanylate cyclase YP_005278464.1 2904034 R 595495 CDS YP_005278465.1 378713572 11777567 2905979..2908402 1 NC_016902.1 SMART: Tetratricopeptide repeat; KEGG: ebd:ECBD_2570 outer membrane protein PgaA; hypothetical protein 2908402 11777567 EKO11_2806 Escherichia coli KO11FL hypothetical protein YP_005278465.1 2905979 D 595495 CDS YP_005278466.1 378713573 11779597 2908411..2910429 1 NC_016902.1 PFAM: polysaccharide deacetylase; KEGG: ebd:ECBD_2571 outer membrane N-deacetylase; polysaccharide deacetylase 2910429 11779597 EKO11_2807 Escherichia coli KO11FL polysaccharide deacetylase YP_005278466.1 2908411 D 595495 CDS YP_005278467.1 378713574 11779598 2910422..2911747 1 NC_016902.1 PFAM: glycosyl transferase family 2; KEGG: ebd:ECBD_2572 N-glycosyltransferase; family 2 glycosyl transferase 2911747 11779598 EKO11_2808 Escherichia coli KO11FL family 2 glycosyl transferase YP_005278467.1 2910422 D 595495 CDS YP_005278468.1 378713575 11777568 2911749..2912162 1 NC_016902.1 KEGG: sfv:SFV_1032 putative PGA biosynthesis protein; putative PGA biosynthesis protein 2912162 11777568 EKO11_2809 Escherichia coli KO11FL putative PGA biosynthesis protein YP_005278468.1 2911749 D 595495 CDS YP_005278469.1 378713576 11777569 complement(2912212..2913276) 1 NC_016902.1 PFAM: PhoH family protein; KEGG: ebd:ECBD_2574 hypothetical protein; PhoH family protein 2913276 11777569 EKO11_2810 Escherichia coli KO11FL PhoH family protein YP_005278469.1 2912212 R 595495 CDS YP_005278470.1 378713577 11777570 complement(2913539..2914810) 1 NC_016902.1 KEGG: eoj:ECO26_1256 hypothetical protein; TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; dyp-type peroxidase family protein 2914810 11777570 EKO11_2811 Escherichia coli KO11FL dyp-type peroxidase family protein YP_005278470.1 2913539 R 595495 CDS YP_005278471.1 378713578 11777571 complement(2914816..2915943) 1 NC_016902.1 PFAM: Peptidase M75, Imelysin; KEGG: eoh:ECO103_1063 hypothetical protein; peptidase M75, Imelysin 2915943 11777571 EKO11_2812 Escherichia coli KO11FL peptidase M75, Imelysin YP_005278471.1 2914816 R 595495 CDS YP_005278472.1 378713579 11777572 complement(2916001..2916831) 1 NC_016902.1 KEGG: ssn:SSON_1036 high-affinity iron permease; TIGRFAM: FTR1 family protein; PFAM: iron permease FTR1; FTR1 family protein 2916831 11777572 EKO11_2813 Escherichia coli KO11FL FTR1 family protein YP_005278472.1 2916001 R 595495 CDS YP_005278473.1 378713580 11777574 complement(2917497..2919005) 1 NC_016902.1 KEGG: sbo:SBO_2042 major sodium/proline symporter; TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; sodium/proline symporter 2919005 11777574 EKO11_2815 Escherichia coli KO11FL sodium/proline symporter YP_005278473.1 2917497 R 595495 CDS YP_005278474.1 378713581 11777575 2919428..2923390 1 NC_016902.1 KEGG: eoi:ECO111_1203 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 2923390 11777575 EKO11_2816 Escherichia coli KO11FL delta-1-pyrroline-5-carboxylate dehydrogenase YP_005278474.1 2919428 D 595495 CDS YP_005278475.1 378713582 11777576 complement(2923430..2924068) 1 NC_016902.1 KEGG: sbc:SbBS512_E2305 transcriptional regulator RutR; TIGRFAM: pyrimidine utilization regulatory protein R; PFAM: Tetracycline transcriptional regulator YcdC domain-containing protein; regulatory protein TetR; TetR family transcriptional regulator 2924068 11777576 EKO11_2817 Escherichia coli KO11FL TetR family transcriptional regulator YP_005278475.1 2923430 R 595495 CDS YP_005278476.1 378713583 11777577 2924356..2925447 1 NC_016902.1 KEGG: eoh:ECO103_1058 putative monooxygenase; TIGRFAM: pyrimidine utilization protein A; PFAM: Luciferase-like, subgroup; pyrimidine utilization protein A 2925447 11777577 EKO11_2818 Escherichia coli KO11FL pyrimidine utilization protein A YP_005278476.1 2924356 D 595495 CDS YP_005278477.1 378713584 11777578 2925444..2926139 1 NC_016902.1 KEGG: ssn:SSON_1030 putative synthetase; TIGRFAM: pyrimidine utilization protein B; PFAM: isochorismatase hydrolase; pyrimidine utilization protein B 2926139 11777578 EKO11_2819 Escherichia coli KO11FL pyrimidine utilization protein B YP_005278477.1 2925444 D 595495 CDS YP_005278478.1 378713585 11777579 2926151..2926537 1 NC_016902.1 KEGG: eoi:ECO111_1199 hypothetical protein; TIGRFAM: pyrimidine utilization protein C; PFAM: Endoribonuclease L-PSP; pyrimidine utilization protein C 2926537 11777579 EKO11_2820 Escherichia coli KO11FL pyrimidine utilization protein C YP_005278478.1 2926151 D 595495 CDS YP_005278479.1 378713586 11777580 2926545..2927345 1 NC_016902.1 KEGG: eoi:ECO111_1198 putative hydrolase; TIGRFAM: pyrimidine utilization protein D; PFAM: alpha/beta hydrolase fold; pyrimidine utilization protein D 2927345 11777580 EKO11_2821 Escherichia coli KO11FL pyrimidine utilization protein D YP_005278479.1 2926545 D 595495 CDS YP_005278480.1 378713587 11777581 2927355..2927945 1 NC_016902.1 PFAM: nitroreductase; KEGG: eoi:ECO111_1197 hypothetical protein; nitroreductase 2927945 11777581 EKO11_2822 Escherichia coli KO11FL nitroreductase YP_005278480.1 2927355 D 595495 CDS YP_005278481.1 378713588 11777582 2927956..2928450 1 NC_016902.1 KEGG: ebd:ECBD_2587 flavin reductase domain protein FMN-binding; TIGRFAM: pyrimidine utilization flavin reductase protein F; PFAM: flavin reductase domain protein FMN-binding; pyrimidine utilization flavin reductase protein F 2928450 11777582 EKO11_2823 Escherichia coli KO11FL pyrimidine utilization flavin reductase protein F YP_005278481.1 2927956 D 595495 CDS YP_005278482.1 378713589 11777583 2928471..2929799 1 NC_016902.1 KEGG: eoi:ECO111_1195 putative transporter; TIGRFAM: pyrimidine utilization transport protein G; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; pyrimidine utilization transport protein G 2929799 11777583 EKO11_2824 Escherichia coli KO11FL pyrimidine utilization transport protein G YP_005278482.1 2928471 D 595495 CDS YP_005278483.1 378713590 11779599 complement(2929882..2930085) 1 NC_016902.1 KEGG: ebd:ECBD_2589 uncharacterized protein YmdF; manually curated; PFAM: Stress-induced protein, KGG, repeat; Stress-induced protein, KGG, repeat 2930085 11779599 EKO11_2825 Escherichia coli KO11FL Stress-induced protein, KGG, repeat YP_005278483.1 2929882 R 595495 CDS YP_005278484.1 378713591 11777584 2930428..2931024 1 NC_016902.1 KEGG: sfv:SFV_1016 TrpR binding protein WrbA; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; flavoprotein WrbA 2931024 11777584 EKO11_2826 Escherichia coli KO11FL flavoprotein WrbA YP_005278484.1 2930428 D 595495 CDS YP_005278485.1 378713592 11779600 2931045..2931272 1 NC_016902.1 KEGG: sdy:SDY_0979 hypothetical protein; hypothetical protein 2931272 11779600 EKO11_2827 Escherichia coli KO11FL hypothetical protein YP_005278485.1 2931045 D 595495 CDS YP_005278486.1 378713593 11779601 complement(2931310..2932551) 1 NC_016902.1 KEGG: eoh:ECO103_1048 glucose-1-phosphatase/inositol phosphatase; PFAM: histidine acid phosphatase; Glucose-1-phosphatase 2932551 11779601 EKO11_2828 Escherichia coli KO11FL Glucose-1-phosphatase YP_005278486.1 2931310 R 595495 CDS YP_005278487.1 378713594 11777586 2934361..2935281 1 NC_016902.1 KEGG: sbo:SBO_2231 curved DNA-binding protein CbpA; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; chaperone DnaJ domain-containing protein 2935281 11777586 EKO11_2830 Escherichia coli KO11FL chaperone DnaJ domain-containing protein YP_005278487.1 2934361 D 595495 CDS YP_005278488.1 378713595 11777587 2935281..2935586 1 NC_016902.1 KEGG: sbc:SbBS512_E2315 chaperone-modulator protein CbpM; chaperone-modulator protein CbpM 2935586 11777587 EKO11_2831 Escherichia coli KO11FL chaperone-modulator protein CbpM YP_005278488.1 2935281 D 595495 CDS YP_005278489.1 378713596 11777588 complement(2935679..2936278) 1 NC_016902.1 KEGG: eoi:ECO111_1109 chaperone protein TorD; chaperone protein TorD 2936278 11777588 EKO11_2832 Escherichia coli KO11FL chaperone protein TorD YP_005278489.1 2935679 R 595495 CDS YP_005278490.1 378713597 11777589 complement(2936275..2938821) 1 NC_016902.1 TIGRFAM: trimethylamine-N-oxide reductase TorA; molybdopterin guanine dinucleotide-containing S/N-oxide reductase; KEGG: eoi:ECO111_1108 trimethylamine N-oxide reductase I, catalytic subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; trimethylamine-N-oxide reductase TorA 2938821 11777589 EKO11_2833 Escherichia coli KO11FL trimethylamine-N-oxide reductase TorA YP_005278490.1 2936275 R 595495 CDS YP_005278491.1 378713598 11777590 complement(2938821..2939993) 1 NC_016902.1 KEGG: efe:EFER_1191 trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit; TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; trimethylamine-N-oxide reductase c-type cytochrome TorC 2939993 11777590 EKO11_2834 Escherichia coli KO11FL trimethylamine-N-oxide reductase c-type cytochrome TorC YP_005278491.1 2938821 R 595495 CDS YP_005278492.1 378713599 11777591 2940123..2940815 1 NC_016902.1 KEGG: sbc:SbBS512_E2320 DNA-binding transcriptional regulator TorR; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 2940815 11777591 EKO11_2835 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005278492.1 2940123 D 595495 CDS YP_005278493.1 378713600 11777592 complement(2940788..2941816) 1 NC_016902.1 KEGG: ssn:SSON_1002 TMAO reductase system periplasmic protein TorT; TIGRFAM: TMAO reductase system periplasmic protein TorT; PFAM: periplasmic binding protein/LacI transcriptional regulator; TMAO reductase system periplasmic protein TorT 2941816 11777592 EKO11_2836 Escherichia coli KO11FL TMAO reductase system periplasmic protein TorT YP_005278493.1 2940788 R 595495 CDS YP_005278494.1 378713601 11777593 2941899..2944643 1 NC_016902.1 TIGRFAM: TMAO reductase sytem sensor TorS; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; Hpt domain protein; KEGG: ebw:BWG_0847 hybrid sensory histidine kinase TorS; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; Hpt domain protein; multi-sensor hybrid histidine kinase 2944643 11777593 EKO11_2837 Escherichia coli KO11FL multi-sensor hybrid histidine kinase YP_005278494.1 2941899 D 595495 CDS YP_005278495.1 378713602 11777594 2944715..2945788 1 NC_016902.1 KEGG: ebd:ECBD_2602 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2945788 11777594 EKO11_2838 Escherichia coli KO11FL 4Fe-4S ferredoxin YP_005278495.1 2944715 D 595495 CDS YP_005278496.1 378713603 11777595 complement(2945836..2946009) 1 NC_016902.1 PFAM: GnsAGnsB family protein; KEGG: sbc:SbBS512_E2323 transcriptional regulator, GnsA/GnsB family; GnsAGnsB family protein 2946009 11777595 EKO11_2839 Escherichia coli KO11FL GnsAGnsB family protein YP_005278496.1 2945836 R 595495 CDS YP_005278497.1 378713604 11777596 complement(2945999..2946229) 1 NC_016902.1 manually curated; KEGG: eoi:ECO111_1101 cold shock gene; cold shock protein 2946229 11777596 EKO11_2840 Escherichia coli KO11FL cold shock protein YP_005278497.1 2945999 R 595495 CDS YP_005278498.1 378713605 11777597 complement(2946403..2946615) 1 NC_016902.1 KEGG: sbc:SbBS512_E2326 cold shock protein CspG; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock protein 2946615 11777597 EKO11_2841 Escherichia coli KO11FL cold-shock protein YP_005278498.1 2946403 R 595495 CDS YP_005278499.1 378713606 11777598 2946901..2947113 1 NC_016902.1 manually curated; PFAM: Cold-shock protein DNA-binding; KEGG: sdy:SDY_0964 cold shock-like protein; SMART: Cold shock protein; cold-shock protein 2947113 11777598 EKO11_2842 Escherichia coli KO11FL cold-shock protein YP_005278499.1 2946901 D 595495 CDS YP_005278500.1 378713607 11779602 2947556..2947861 1 NC_016902.1 KEGG: sbc:SbBS512_E2328 putative inner membrane protein; putative inner membrane protein 2947861 11779602 EKO11_2843 Escherichia coli KO11FL putative inner membrane protein YP_005278500.1 2947556 D 595495 CDS YP_005278501.1 378713608 11779603 2947968..2948612 1 NC_016902.1 KEGG: sbc:SbBS512_E2329 group 4 capsule (G4C) polysaccharide, lipoprotein YmcC; group 4 capsule (G4C) polysaccharide, lipoprotein YmcC 2948612 11779603 EKO11_2844 Escherichia coli KO11FL group 4 capsule (G4C) polysaccharide, lipoprotein YmcC YP_005278501.1 2947968 D 595495 CDS YP_005278502.1 378713609 11777599 2948609..2949355 1 NC_016902.1 PFAM: protein of unknown function DUF1017; KEGG: ssn:SSON_0992 hypothetical protein; hypothetical protein 2949355 11777599 EKO11_2845 Escherichia coli KO11FL hypothetical protein YP_005278502.1 2948609 D 595495 CDS YP_005278503.1 378713610 11779604 2949355..2951451 1 NC_016902.1 PFAM: protein of unknown function DUF940 membrane lipoprotein; KEGG: eoi:ECO111_1095 hypothetical protein; hypothetical protein 2951451 11779604 EKO11_2846 Escherichia coli KO11FL hypothetical protein YP_005278503.1 2949355 D 595495 CDS YP_005278504.1 378713611 11777600 2951497..2952636 1 NC_016902.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: ssn:SSON_0990 putative function in exopolysaccharide production; polysaccharide export protein 2952636 11777600 EKO11_2847 Escherichia coli KO11FL polysaccharide export protein YP_005278504.1 2951497 D 595495 CDS YP_005278505.1 378713612 11777601 2952624..2953070 1 NC_016902.1 KEGG: sdy:SDY_0958 phosphotyrosine-protein phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase 2953070 11777601 EKO11_2848 Escherichia coli KO11FL protein tyrosine phosphatase YP_005278505.1 2952624 D 595495 CDS YP_005278506.1 378713613 11777602 2953090..2955270 1 NC_016902.1 TIGRFAM: capsular exopolysaccharide family; KEGG: sbo:SBO_2249 cryptic autophosphorylating protein tyrosine kinase Etk; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family protein 2955270 11777602 EKO11_2849 Escherichia coli KO11FL capsular exopolysaccharide family protein YP_005278506.1 2953090 D 595495 CDS YP_005278507.1 378713614 11777603 complement(2955385..2956683) 1 NC_016902.1 KEGG: ssn:SSON_0987 phosphoanhydride phosphorylase; PFAM: histidine acid phosphatase; 4-phytase 2956683 11777603 EKO11_2850 Escherichia coli KO11FL 4-phytase YP_005278507.1 2955385 R 595495 CDS YP_005278508.1 378713615 11777604 complement(2956763..2956855) 1 NC_016902.1 PFAM: membrane bound YbgT family protein; KEGG: sbo:SBO_2251 hypothetical protein; membrane bound YbgT family protein 2956855 11777604 EKO11_2851 Escherichia coli KO11FL membrane bound YbgT family protein YP_005278508.1 2956763 R 595495 CDS YP_005278509.1 378713616 11777605 complement(2956868..2958004) 1 NC_016902.1 KEGG: ssn:SSON_0985 third cytochrome oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 2958004 11777605 EKO11_2852 Escherichia coli KO11FL cytochrome d ubiquinol oxidase, subunit II YP_005278509.1 2956868 R 595495 CDS YP_005278510.1 378713617 11777606 complement(2958016..2959560) 1 NC_016902.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sfv:SFV_0987 third cytochrome oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 2959560 11777606 EKO11_2853 Escherichia coli KO11FL cytochrome bd ubiquinol oxidase subunit I YP_005278510.1 2958016 R 595495 CDS YP_005278511.1 378713618 11777607 complement(2959694..2960551) 1 NC_016902.1 PFAM: HupH hydrogenase expression protein; KEGG: ebd:ECBD_2618 HupH hydrogenase expression protein; HupH hydrogenase expression protein 2960551 11777607 EKO11_2854 Escherichia coli KO11FL HupH hydrogenase expression protein YP_005278511.1 2959694 R 595495 CDS YP_005278512.1 378713619 11777608 complement(2960548..2960946) 1 NC_016902.1 PFAM: hydrogenase-1 expression HyaE; KEGG: ebd:ECBD_2619 hydrogenase-1 operon protein HyaE; hydrogenase-1 expression HyaE 2960946 11777608 EKO11_2855 Escherichia coli KO11FL hydrogenase-1 expression HyaE YP_005278512.1 2960548 R 595495 CDS YP_005278513.1 378713620 11777609 complement(2960943..2961530) 1 NC_016902.1 KEGG: sdy:SDY_0950 hydrogenase 1 maturation protease; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; hydrogenase expression/formation protein 2961530 11777609 EKO11_2856 Escherichia coli KO11FL hydrogenase expression/formation protein YP_005278513.1 2960943 R 595495 CDS YP_005278514.1 378713621 11777610 complement(2961527..2962234) 1 NC_016902.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; KEGG: sdy:SDY_0949 hydrogenase 1 b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2962234 11777610 EKO11_2857 Escherichia coli KO11FL Ni/Fe-hydrogenase, b-type cytochrome subunit YP_005278514.1 2961527 R 595495 CDS YP_005278515.1 378713622 11777611 complement(2962253..2964046) 1 NC_016902.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: sbo:SBO_2258 hydrogenase 1 large subunit; nickel-dependent hydrogenase large subunit 2964046 11777611 EKO11_2858 Escherichia coli KO11FL nickel-dependent hydrogenase large subunit YP_005278515.1 2962253 R 595495 CDS YP_005278516.1 378713623 11777612 complement(2964043..2965161) 1 NC_016902.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: eoh:ECO103_1017 hydrogenase 1, small subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 2965161 11777612 EKO11_2859 Escherichia coli KO11FL hydrogenase (NiFe) small subunit HydA YP_005278516.1 2964043 R 595495 CDS YP_005278517.1 378713624 11777614 2965882..2966541 1 NC_016902.1 PFAM: protein of unknown function UPF0005; KEGG: sdy:SDY_0945 hypothetical protein; hypothetical protein 2966541 11777614 EKO11_2860 Escherichia coli KO11FL hypothetical protein YP_005278517.1 2965882 D 595495 CDS YP_005278518.1 378713625 11777615 2966632..2966961 1 NC_016902.1 KEGG: sbc:SbBS512_E2347 sulfur transfer protein TusE; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; TusE/DsrC/DsvC family sulfur relay protein 2966961 11777615 EKO11_2861 Escherichia coli KO11FL TusE/DsrC/DsvC family sulfur relay protein YP_005278518.1 2966632 D 595495 CDS YP_005278519.1 378713626 11777616 complement(2966958..2967236) 1 NC_016902.1 PFAM: acylphosphatase; KEGG: sdy:SDY_0943 hypothetical protein; acylphosphatase 2967236 11777616 EKO11_2862 Escherichia coli KO11FL acylphosphatase YP_005278519.1 2966958 R 595495 CDS YP_005278520.1 378713627 11777617 2967331..2968521 1 NC_016902.1 manually curated; PFAM: Conserved hypothetical protein CHP00095; KEGG: ebw:BWG_0819 putative methyltransferase; SMART: PUA domain containing protein; hypothetical protein 2968521 11777617 EKO11_2863 Escherichia coli KO11FL hypothetical protein YP_005278520.1 2967331 D 595495 CDS YP_005278521.1 378713628 11777618 2968579..2968896 1 NC_016902.1 KEGG: sbc:SbBS512_E2349 heat shock protein HspQ; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; hemimethylated DNA binding protein 2968896 11777618 EKO11_2864 Escherichia coli KO11FL hemimethylated DNA binding protein YP_005278521.1 2968579 D 595495 CDS YP_005278522.1 378713629 11777619 complement(2968941..2969354) 1 NC_016902.1 PFAM: CoA-binding domain protein; KEGG: sbc:SbBS512_E2350 putative CoA-binding protein; CoA-binding protein 2969354 11777619 EKO11_2865 Escherichia coli KO11FL CoA-binding protein YP_005278522.1 2968941 R 595495 CDS YP_005278523.1 378713630 11779605 2969527..2970189 1 NC_016902.1 PFAM: Protein of unknown function DUF2057; KEGG: sdy:SDY_0939 hypothetical protein; hypothetical protein 2970189 11779605 EKO11_2866 Escherichia coli KO11FL hypothetical protein YP_005278523.1 2969527 D 595495 CDS YP_005278524.1 378713631 11779606 2970285..2970743 1 NC_016902.1 TIGRFAM: methylglyoxal synthase; KEGG: sdy:SDY_0938 methylglyoxal synthase; PFAM: MGS domain protein; methylglyoxal synthase 2970743 11779606 EKO11_2867 Escherichia coli KO11FL methylglyoxal synthase YP_005278524.1 2970285 D 595495 CDS YP_005278525.1 378713632 11777620 complement(2970775..2972829) 1 NC_016902.1 PFAM: UvrD/REP helicase; KEGG: ebd:ECBD_2632 DNA helicase IV; UvrD/REP helicase 2972829 11777620 EKO11_2868 Escherichia coli KO11FL UvrD/REP helicase YP_005278525.1 2970775 R 595495 CDS YP_005278526.1 378713633 11777621 2972952..2973398 1 NC_016902.1 PFAM: protein of unknown function DUF307; KEGG: sbc:SbBS512_E2354 hypothetical protein; hypothetical protein 2973398 11777621 EKO11_2869 Escherichia coli KO11FL hypothetical protein YP_005278526.1 2972952 D 595495 CDS YP_005278527.1 378713634 11777622 2973408..2975570 1 NC_016902.1 TIGRFAM: hypothetical protein; integral membrane protein, YccS/YhfK family; KEGG: ssn:SSON_0964 hypothetical protein; hypothetical protein 2975570 11777622 EKO11_2870 Escherichia coli KO11FL hypothetical protein YP_005278527.1 2973408 D 595495 CDS YP_005278528.1 378713635 11777623 complement(2975533..2976162) 1 NC_016902.1 PFAM: TfoX domain-containing protein; KEGG: sdy:SDY_0934 hypothetical protein; competence-specific genes regulator 2976162 11777623 EKO11_2871 Escherichia coli KO11FL competence-specific genes regulator YP_005278528.1 2975533 R 595495 CDS YP_005278529.1 378713636 11777624 2976381..2976890 1 NC_016902.1 KEGG: sbc:SbBS512_E2358 SOS cell division inhibitor; TIGRFAM: cell division inhibitor SulA; PFAM: cell division inhibitor SulA; cell division inhibitor SulA 2976890 11777624 EKO11_2872 Escherichia coli KO11FL cell division inhibitor SulA YP_005278529.1 2976381 D 595495 CDS YP_005278530.1 378713637 11777625 2977247..2978287 1 NC_016902.1 KEGG: sbc:SbBS512_E2359 outer membrane protein A; manually curated; PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2978287 11777625 EKO11_2873 Escherichia coli KO11FL OmpA/MotB domain-containing protein YP_005278530.1 2977247 D 595495 CDS YP_005278531.1 378713638 11777626 complement(2978363..2978815) 1 NC_016902.1 PFAM: protein of unknown function DUF1047; KEGG: sdy:SDY_0929 hypothetical protein; hypothetical protein 2978815 11777626 EKO11_2874 Escherichia coli KO11FL hypothetical protein YP_005278531.1 2978363 R 595495 CDS YP_005278532.1 378713639 11777627 2979001..2980761 1 NC_016902.1 KEGG: ssn:SSON_0959 putative ATP-dependent protease; putative ATP-dependent protease 2980761 11777627 EKO11_2875 Escherichia coli KO11FL putative ATP-dependent protease YP_005278532.1 2979001 D 595495 CDS YP_005278533.1 378713640 11777628 2980830..2981348 1 NC_016902.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: sdy:SDY_0927 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 2981348 11777628 EKO11_2876 Escherichia coli KO11FL beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YP_005278533.1 2980830 D 595495 CDS YP_005278534.1 378713641 11777629 complement(2981418..2981585) 1 NC_016902.1 PFAM: ribosome modulation factor; KEGG: sdy:SDY_0926 ribosome modulation factor; ribosome modulation factor 2981585 11777629 EKO11_2877 Escherichia coli KO11FL ribosome modulation factor YP_005278534.1 2981418 R 595495 CDS YP_005278535.1 378713642 11777630 complement(2981841..2982404) 1 NC_016902.1 PFAM: protein of unknown function DUF330; KEGG: eoi:ECO111_1020 hypothetical protein; hypothetical protein 2982404 11777630 EKO11_2878 Escherichia coli KO11FL hypothetical protein YP_005278535.1 2981841 R 595495 CDS YP_005278536.1 378713643 11777631 complement(2982401..2984041) 1 NC_016902.1 PFAM: Mammalian cell entry related domain protein; KEGG: ebd:ECBD_2644 paraquat-inducible protein B; Mammalian cell entry related domain-containing protein 2984041 11777631 EKO11_2879 Escherichia coli KO11FL Mammalian cell entry related domain-containing protein YP_005278536.1 2982401 R 595495 CDS YP_005278537.1 378713644 11777632 complement(2984046..2985299) 1 NC_016902.1 KEGG: sbo:SBO_2281 paraquat-inducible protein A; TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; PqiA family integral membrane protein 2985299 11777632 EKO11_2880 Escherichia coli KO11FL PqiA family integral membrane protein YP_005278537.1 2984046 R 595495 CDS YP_005278538.1 378713645 11777633 complement(2985429..2987336) 1 NC_016902.1 KEGG: ssn:SSON_0953 ABC transporter ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2987336 11777633 EKO11_2881 Escherichia coli KO11FL ABC transporter YP_005278538.1 2985429 R 595495 CDS YP_005278539.1 378713646 11777634 complement(2987347..2989455) 1 NC_016902.1 KEGG: eoh:ECO103_0994 23S rRNA m(2)G2445 methyltransferase; PFAM: RNA methylase; THUMP domain-containing protein; Conserved hypothetical protein CHP00095; rRNA (guanine-N(2)-)-methyltransferase 2989455 11777634 EKO11_2882 Escherichia coli KO11FL rRNA (guanine-N(2)-)-methyltransferase YP_005278539.1 2987347 R 595495 CDS YP_005278540.1 378713647 11777635 2989699..2990808 1 NC_016902.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; ferredoxin; KEGG: eoh:ECO103_0993 putative 2Fe-2S cluster-containing protein; MOSC domain-containing protein 2990808 11777635 EKO11_2883 Escherichia coli KO11FL MOSC domain-containing protein YP_005278540.1 2989699 D 595495 CDS YP_005278541.1 378713648 11777636 complement(2990805..2991347) 1 NC_016902.1 PFAM: protein of unknown function DUF1379; KEGG: sbc:SbBS512_E2370 hypothetical protein; hypothetical protein 2991347 11777636 EKO11_2884 Escherichia coli KO11FL hypothetical protein YP_005278541.1 2990805 R 595495 CDS YP_005278542.1 378713649 11777637 complement(2991521..2992531) 1 NC_016902.1 TIGRFAM: dihydroorotate dehydrogenase; KEGG: sbc:SbBS512_E2372 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase; dihydroorotate dehydrogenase 2992531 11777637 EKO11_2885 Escherichia coli KO11FL dihydroorotate dehydrogenase YP_005278542.1 2991521 R 595495 CDS YP_005278543.1 378713650 11777638 complement(2992641..2993330) 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ssn:SSON_0948 putativi pili assembly chaperone; Pili assembly chaperone, N-terminal protein 2993330 11777638 EKO11_2886 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005278543.1 2992641 R 595495 CDS YP_005278544.1 378713651 11777639 complement(2993344..2993907) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eok:G2583_1178 putative fimbrial-like protein; fimbrial protein domain-containing protein 2993907 11777639 EKO11_2887 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005278544.1 2993344 R 595495 CDS YP_005278545.1 378713652 11777640 complement(2993867..2994409) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sbc:SbBS512_E2375 fimbrial protein; fimbrial protein domain-containing protein 2994409 11777640 EKO11_2888 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005278545.1 2993867 R 595495 CDS YP_005278546.1 378713653 11777641 complement(2994421..2995491) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sbc:SbBS512_E2376 putative fimbrial protein; fimbrial protein domain-containing protein 2995491 11777641 EKO11_2889 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005278546.1 2994421 R 595495 CDS YP_005278547.1 378713654 11777642 complement(2995482..2998082) 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoi:ECO111_1008 putative outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 2998082 11777642 EKO11_2890 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005278547.1 2995482 R 595495 CDS YP_005278548.1 378713655 11777643 complement(2998107..2998808) 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ssn:SSON_0943 putative chaperone; Pili assembly chaperone, N-terminal protein 2998808 11777643 EKO11_2891 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005278548.1 2998107 R 595495 CDS YP_005278549.1 378713656 11779607 complement(2998891..2999433) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sbc:SbBS512_E2380 fimbrial protein; fimbrial protein domain-containing protein 2999433 11779607 EKO11_2892 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005278549.1 2998891 R 595495 CDS YP_005278550.1 378713657 11777644 2999789..3000364 1 NC_016902.1 TIGRFAM: FMN reductase; KEGG: sbc:SbBS512_E2381 NAD(P)H-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; FMN reductase 3000364 11777644 EKO11_2893 Escherichia coli KO11FL FMN reductase YP_005278550.1 2999789 D 595495 CDS YP_005278551.1 378713658 11777645 3000357..3001316 1 NC_016902.1 KEGG: ebd:ECBD_2659 alkanesulfonate transporter substrate-binding subunit; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; aliphatic sulfonate ABC transporter substrate-binding protein 3001316 11777645 EKO11_2894 Escherichia coli KO11FL aliphatic sulfonate ABC transporter substrate-binding protein YP_005278551.1 3000357 D 595495 CDS YP_005278552.1 378713659 11777646 3001313..3002458 1 NC_016902.1 KEGG: eoh:ECO103_0980 alkanesulfonate monooxygenase; TIGRFAM: alkanesulfonate monooxygenase, FMNH(2)-dependent; PFAM: Luciferase-like, subgroup; alkanesulfonate monooxygenase 3002458 11777646 EKO11_2895 Escherichia coli KO11FL alkanesulfonate monooxygenase YP_005278552.1 3001313 D 595495 CDS YP_005278553.1 378713660 11777647 3002469..3003260 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_0937 alkanesulfonate transporter permease subunit; binding-protein-dependent transport system inner membrane protein 3003260 11777647 EKO11_2896 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278553.1 3002469 D 595495 CDS YP_005278554.1 378713661 11779608 3003257..3004024 1 NC_016902.1 KEGG: ssn:SSON_0936 aliphatic sulfonates transport ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3004024 11779608 EKO11_2897 Escherichia coli KO11FL ABC transporter YP_005278554.1 3003257 D 595495 CDS YP_005278555.1 378713662 11777648 complement(3004231..3006843) 1 NC_016902.1 KEGG: eoh:ECO103_0977 aminopeptidase N; TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; aminopeptidase N 3006843 11777648 EKO11_2898 Escherichia coli KO11FL aminopeptidase N YP_005278555.1 3004231 R 595495 CDS YP_005278556.1 378713663 11777649 3007109..3008311 1 NC_016902.1 KEGG: sbo:SBO_2222 nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; nicotinate phosphoribosyltransferase 3008311 11777649 EKO11_2899 Escherichia coli KO11FL nicotinate phosphoribosyltransferase YP_005278556.1 3007109 D 595495 CDS YP_005278557.1 378713664 11777650 3008480..3009880 1 NC_016902.1 TIGRFAM: asparaginyl-tRNA synthetase; KEGG: sbc:SbBS512_E2388 asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; asparaginyl-tRNA synthetase 3009880 11777650 EKO11_2900 Escherichia coli KO11FL asparaginyl-tRNA synthetase YP_005278557.1 3008480 D 595495 CDS YP_005278558.1 378713665 11779609 3010482..3011570 1 NC_016902.1 PFAM: porin Gram-negative type; KEGG: sbc:SbBS512_E2389 outer membrane protein F; porin 3011570 11779609 EKO11_2901 Escherichia coli KO11FL porin YP_005278558.1 3010482 D 595495 CDS YP_005278559.1 378713666 11777651 3011754..3012944 1 NC_016902.1 KEGG: sdy:SDY_2329 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II; aspartate transaminase 3012944 11777651 EKO11_2902 Escherichia coli KO11FL aspartate transaminase YP_005278559.1 3011754 D 595495 CDS YP_005278560.1 378713667 11777652 complement(3013166..3013813) 1 NC_016902.1 KEGG: sbo:SBO_2218 hypothetical protein; hypothetical protein 3013813 11777652 EKO11_2903 Escherichia coli KO11FL hypothetical protein YP_005278560.1 3013166 R 595495 CDS YP_005278561.1 378713668 11777653 complement(3013840..3014388) 1 NC_016902.1 PFAM: protein of unknown function DUF882; KEGG: sdy:SDY_2331 hypothetical protein; hypothetical protein 3014388 11777653 EKO11_2904 Escherichia coli KO11FL hypothetical protein YP_005278561.1 3013840 R 595495 CDS YP_005278562.1 378713669 11777654 complement(3014569..3016416) 1 NC_016902.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: sbo:SBO_2216 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3016416 11777654 EKO11_2905 Escherichia coli KO11FL ErfK/YbiS/YcfS/YnhG family protein YP_005278562.1 3014569 R 595495 CDS YP_005278563.1 378713670 11777655 complement(3016677..3021137) 1 NC_016902.1 PFAM: chromosome segregation and condensation protein MukB domain protein; KEGG: ebw:BWG_0776 cell division protein MukB; chromosome segregation and condensation protein MukB domain protein 3021137 11777655 EKO11_2906 Escherichia coli KO11FL chromosome segregation and condensation protein MukB domain protein YP_005278563.1 3016677 R 595495 CDS YP_005278564.1 378713671 11777656 complement(3021137..3021841) 1 NC_016902.1 PFAM: chromosome segregation and condensation protein MukE; KEGG: sbc:SbBS512_E2401 condesin subunit E; chromosome segregation and condensation protein MukE 3021841 11777656 EKO11_2907 Escherichia coli KO11FL chromosome segregation and condensation protein MukE YP_005278564.1 3021137 R 595495 CDS YP_005278565.1 378713672 11777657 complement(3021822..3023144) 1 NC_016902.1 PFAM: chromosome segregation and condensation protein MukF; KEGG: sdy:SDY_2336 condesin subunit F; chromosome segregation and condensation protein MukF 3023144 11777657 EKO11_2908 Escherichia coli KO11FL chromosome segregation and condensation protein MukF YP_005278565.1 3021822 R 595495 CDS YP_005278566.1 378713673 11777658 complement(3023141..3023926) 1 NC_016902.1 PFAM: Methyltransferase type 11; KEGG: sdy:SDY_2337 putative metallothionein SmtA; type 11 methyltransferase 3023926 11777658 EKO11_2909 Escherichia coli KO11FL type 11 methyltransferase YP_005278566.1 3023141 R 595495 CDS YP_005278567.1 378713674 11777659 3024062..3024841 1 NC_016902.1 PFAM: protein of unknown function DUF218; KEGG: sfv:SFV_0921 hypothetical protein; hypothetical protein 3024841 11777659 EKO11_2910 Escherichia coli KO11FL hypothetical protein YP_005278567.1 3024062 D 595495 CDS YP_005278568.1 378713675 11777660 complement(3024818..3025711) 1 NC_016902.1 KEGG: sbc:SbBS512_E2404 hypothetical protein; hypothetical protein 3025711 11777660 EKO11_2911 Escherichia coli KO11FL hypothetical protein YP_005278568.1 3024818 R 595495 CDS YP_005278569.1 378713676 11779610 complement(3025865..3026611) 1 NC_016902.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: ebd:ECBD_2677 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 3026611 11779610 EKO11_2912 Escherichia coli KO11FL 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_005278569.1 3025865 R 595495 CDS YP_005278570.1 378713677 11777661 complement(3026608..3026790) 1 NC_016902.1 PFAM: protein of unknown function DUF343; KEGG: sdy:SDY_2341 hypothetical protein; hypothetical protein 3026790 11777661 EKO11_2913 Escherichia coli KO11FL hypothetical protein YP_005278570.1 3026608 R 595495 CDS YP_005278571.1 378713678 11777662 complement(3026842..3028074) 1 NC_016902.1 PFAM: protein of unknown function DUF1006; KEGG: eoi:ECO111_0984 hypothetical protein; hypothetical protein 3028074 11777662 EKO11_2914 Escherichia coli KO11FL hypothetical protein YP_005278571.1 3026842 R 595495 CDS YP_005278572.1 378713679 11777663 complement(3028111..3029097) 1 NC_016902.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: ssn:SSON_0917 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 3029097 11777663 EKO11_2915 Escherichia coli KO11FL tetraacyldisaccharide 4'-kinase YP_005278572.1 3028111 R 595495 CDS YP_005278573.1 378713680 11779611 complement(3029094..3030842) 1 NC_016902.1 TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; KEGG: sdy:SDY_2344 lipid transporter ATP-binding/permease protein; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 3030842 11779611 EKO11_2916 Escherichia coli KO11FL lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_005278573.1 3029094 R 595495 CDS YP_005278574.1 378713681 11777664 complement(3030879..3033143) 1 NC_016902.1 KEGG: eoj:ECO26_1039 hypothetical protein; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 3033143 11777664 EKO11_2917 Escherichia coli KO11FL DNA internalization-related competence protein ComEC/Rec2 YP_005278574.1 3030879 R 595495 CDS YP_005278575.1 378713682 11777665 complement(3033350..3033634) 1 NC_016902.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: sdy:SDY_2346 integration host factor subunit beta; SMART: histone family protein DNA-binding protein; integration host factor subunit beta 3033634 11777665 EKO11_2918 Escherichia coli KO11FL integration host factor subunit beta YP_005278575.1 3033350 R 595495 CDS YP_005278576.1 378713683 11777666 complement(3033794..3035467) 1 NC_016902.1 KEGG: sbc:SbBS512_E2417 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; 30S ribosomal protein S1 3035467 11777666 EKO11_2919 Escherichia coli KO11FL 30S ribosomal protein S1 YP_005278576.1 3033794 R 595495 CDS YP_005278577.1 378713684 11777667 complement(3035578..3036261) 1 NC_016902.1 TIGRFAM: cytidylate kinase; KEGG: sbc:SbBS512_E2418 cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 3036261 11777667 EKO11_2920 Escherichia coli KO11FL cytidylate kinase YP_005278577.1 3035578 R 595495 CDS YP_005278578.1 378713685 11779612 complement(3036434..3037198) 1 NC_016902.1 PFAM: peptidase M48 Ste24p; KEGG: ssn:SSON_0911 putative heat shock protein; peptidase M48 Ste24p 3037198 11779612 EKO11_2921 Escherichia coli KO11FL peptidase M48 Ste24p YP_005278578.1 3036434 R 595495 CDS YP_005278579.1 378713686 11779613 complement(3037367..3038650) 1 NC_016902.1 KEGG: sbc:SbBS512_E2420 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase 3038650 11779613 EKO11_2922 Escherichia coli KO11FL 3-phosphoshikimate 1-carboxyvinyltransferase YP_005278579.1 3037367 R 595495 CDS YP_005278580.1 378713687 11777668 complement(3038721..3039809) 1 NC_016902.1 TIGRFAM: phosphoserine aminotransferase; KEGG: ssn:SSON_0908 phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase 3039809 11777668 EKO11_2923 Escherichia coli KO11FL phosphoserine aminotransferase YP_005278580.1 3038721 R 595495 CDS YP_005278581.1 378713688 11777669 complement(3040008..3040700) 1 NC_016902.1 PFAM: protein of unknown function DUF421; KEGG: sbc:SbBS512_E2422 hypothetical protein; hypothetical protein 3040700 11777669 EKO11_2924 Escherichia coli KO11FL hypothetical protein YP_005278581.1 3040008 R 595495 CDS YP_005278582.1 378713689 11777670 3040830..3042590 1 NC_016902.1 PFAM: protein of unknown function DUF181; KEGG: eoh:ECO103_0948 hypothetical protein; hypothetical protein 3042590 11777670 EKO11_2925 Escherichia coli KO11FL hypothetical protein YP_005278582.1 3040830 D 595495 CDS YP_005278583.1 378713690 11777671 3043383..3045089 1 NC_016902.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: zmo:ZMO1360 thiamine pyrophosphate protein TPP binding domain-containing protein; thiamine pyrophosphate TPP-binding domain-containing protein 3045089 11777671 EKO11_2927 Escherichia coli KO11FL thiamine pyrophosphate TPP-binding domain-containing protein YP_005278583.1 3043383 D 595495 CDS YP_005278584.1 378713691 11777672 3045149..3046300 1 NC_016902.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: zmn:Za10_1617 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 3046300 11777672 EKO11_2928 Escherichia coli KO11FL iron-containing alcohol dehydrogenase YP_005278584.1 3045149 D 595495 CDS YP_005278585.1 378713692 11777673 3046776..3047435 1 NC_016902.1 KEGG: abn:AB57_0280 chloramphenicol acetyltransferase; PFAM: chloramphenicol acetyltransferase; chloramphenicol O-acetyltransferase 3047435 11777673 EKO11_2929 Escherichia coli KO11FL chloramphenicol O-acetyltransferase YP_005278585.1 3046776 D 595495 CDS YP_005278586.1 378713693 11777677 3051490..3052563 1 NC_016902.1 manually curated; TIGRFAM: formate/nitrite transporter; KEGG: sfv:SFV_0904 formate transporter; PFAM: formate/nitrite transporter; formate/nitrite transporter 3052563 11777677 EKO11_2933 Escherichia coli KO11FL formate/nitrite transporter YP_005278586.1 3051490 D 595495 CDS YP_005278587.1 378713694 11777678 3052618..3054900 1 NC_016902.1 TIGRFAM: formate acetyltransferase; KEGG: sdy:SDY_2358 formate acetyltransferase 1; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; formate acetyltransferase 3054900 11777678 EKO11_2934 Escherichia coli KO11FL formate acetyltransferase YP_005278587.1 3052618 D 595495 CDS YP_005278588.1 378713695 11777679 3055092..3055832 1 NC_016902.1 TIGRFAM: pyruvate formate-lyase activating enzyme; KEGG: sdy:SDY_2359 pyruvate formate lyase-activating enzyme 1; PFAM: Radical SAM domain protein; pyruvate formate-lyase activating enzyme 3055832 11777679 EKO11_2935 Escherichia coli KO11FL pyruvate formate-lyase activating enzyme YP_005278588.1 3055092 D 595495 CDS YP_005278589.1 378713696 11777680 complement(3055914..3056504) 1 NC_016902.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: eoh:ECO103_0944 hypothetical protein; NAD(P)H dehydrogenase (quinone) 3056504 11777680 EKO11_2936 Escherichia coli KO11FL NAD(P)H dehydrogenase (quinone) YP_005278589.1 3055914 R 595495 CDS YP_005278590.1 378713697 11777681 3056604..3057512 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eoi:ECO111_0968 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 3057512 11777681 EKO11_2937 Escherichia coli KO11FL LysR family transcriptional regulator YP_005278590.1 3056604 D 595495 CDS YP_005278591.1 378713698 11777682 complement(3057513..3058943) 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: ebd:ECBD_2696 amino acid permease-associated region; amino acid permease 3058943 11777682 EKO11_2938 Escherichia coli KO11FL amino acid permease YP_005278591.1 3057513 R 595495 CDS YP_005278592.1 378713699 11777683 complement(3059153..3060277) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_2363 putative MFS family transporter protein; major facilitator superfamily protein 3060277 11777683 EKO11_2939 Escherichia coli KO11FL major facilitator superfamily protein YP_005278592.1 3059153 R 595495 CDS YP_005278593.1 378713700 11777684 3060616..3061242 1 NC_016902.1 PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_0898 hypothetical protein; isochorismatase hydrolase 3061242 11777684 EKO11_2940 Escherichia coli KO11FL isochorismatase hydrolase YP_005278593.1 3060616 D 595495 CDS YP_005278594.1 378713701 11779614 complement(3061278..3062141) 1 NC_016902.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: eoi:ECO111_0964 dimethyl sulfoxide reductase, anaerobic, subunit C; DMSO reductase anchor subunit DmsC 3062141 11779614 EKO11_2941 Escherichia coli KO11FL DMSO reductase anchor subunit DmsC YP_005278594.1 3061278 R 595495 CDS YP_005278595.1 378713702 11777685 complement(3062143..3062760) 1 NC_016902.1 TIGRFAM: dimethylsulfoxide reductase, chain B; KEGG: sbc:SbBS512_E2433 dimethylsulfoxide reductase, B subunit; dimethylsulfoxide reductase subunit B 3062760 11777685 EKO11_2942 Escherichia coli KO11FL dimethylsulfoxide reductase subunit B YP_005278595.1 3062143 R 595495 CDS YP_005278596.1 378713703 11777686 complement(3062771..3065215) 1 NC_016902.1 KEGG: eoi:ECO111_0962 dimethyl sulfoxide reductase, anaerobic, subunit A; TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; anaerobic dimethyl sulfoxide reductase subunit A 3065215 11777686 EKO11_2943 Escherichia coli KO11FL anaerobic dimethyl sulfoxide reductase subunit A YP_005278596.1 3062771 R 595495 CDS YP_005278597.1 378713704 11777687 complement(3065454..3066746) 1 NC_016902.1 KEGG: sbo:SBO_0826 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase 3066746 11777687 EKO11_2944 Escherichia coli KO11FL seryl-tRNA synthetase YP_005278597.1 3065454 R 595495 CDS YP_005278598.1 378713705 11777688 complement(3066837..3068180) 1 NC_016902.1 KEGG: ssn:SSON_0893 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; AAA ATPase 3068180 11777688 EKO11_2945 Escherichia coli KO11FL AAA ATPase YP_005278598.1 3066837 R 595495 CDS YP_005278599.1 378713706 11777689 complement(3068191..3068802) 1 NC_016902.1 KEGG: sdy:SDY_2370 outer-membrane lipoprotein carrier protein; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 3068802 11777689 EKO11_2946 Escherichia coli KO11FL outer membrane lipoprotein carrier protein LolA YP_005278599.1 3068191 R 595495 CDS YP_005278600.1 378713707 11777690 complement(3068957..3073024) 1 NC_016902.1 PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: eoh:ECO103_0933 DNA translocase FtsK; cell division protein FtsK 3073024 11777690 EKO11_2947 Escherichia coli KO11FL cell division protein FtsK YP_005278600.1 3068957 R 595495 CDS YP_005278601.1 378713708 11777691 complement(3073159..3073653) 1 NC_016902.1 KEGG: ent:Ent638_1413 leucine-responsive transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator 3073653 11777691 EKO11_2948 Escherichia coli KO11FL AsnC family transcriptional regulator YP_005278601.1 3073159 R 595495 CDS YP_005278602.1 378713709 11777692 3074198..3075163 1 NC_016902.1 KEGG: sdy:SDY_2373 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 3075163 11777692 EKO11_2949 Escherichia coli KO11FL thioredoxin reductase YP_005278602.1 3074198 D 595495 CDS YP_005278603.1 378713710 11777693 3075286..3077052 1 NC_016902.1 TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: eoh:ECO103_0930 cysteine/glutathione ABC transporter membrane/ATP-binding component; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 3077052 11777693 EKO11_2950 Escherichia coli KO11FL cysteine ABC transporter ATP-binding protein/permease YP_005278603.1 3075286 D 595495 CDS YP_005278604.1 378713711 11777694 3077053..3078774 1 NC_016902.1 TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; KEGG: eoh:ECO103_0929 cysteine/glutathione ABC transporter membrane/ATP-binding component; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 3078774 11777694 EKO11_2951 Escherichia coli KO11FL cysteine ABC transporter ATP-binding protein/permease YP_005278604.1 3077053 D 595495 CDS YP_005278605.1 378713712 11777695 3078816..3079520 1 NC_016902.1 TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: sbc:SbBS512_E2444 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 3079520 11777695 EKO11_2952 Escherichia coli KO11FL leucyl/phenylalanyl-tRNA/protein transferase YP_005278605.1 3078816 D 595495 CDS YP_005278606.1 378713713 11777696 3079805..3080023 1 NC_016902.1 KEGG: cro:ROD_09485 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor IF-1 3080023 11777696 EKO11_2953 Escherichia coli KO11FL translation initiation factor IF-1 YP_005278606.1 3079805 D 595495 CDS YP_005278607.1 378713714 11777698 complement(3080708..3082984) 1 NC_016902.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: ssn:SSON_0883 ATP-dependent Clp protease ATP-binding subunit; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 3082984 11777698 EKO11_2954 Escherichia coli KO11FL ATP-dependent Clp protease ATP-binding protein ClpA YP_005278607.1 3080708 R 595495 CDS YP_005278608.1 378713715 11777699 complement(3083015..3083335) 1 NC_016902.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: sdy:SDY_2380 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 3083335 11777699 EKO11_2955 Escherichia coli KO11FL ATP-dependent Clp protease adaptor protein ClpS YP_005278608.1 3083015 R 595495 CDS YP_005278609.1 378713716 11777700 3083658..3083882 1 NC_016902.1 TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; KEGG: sdy:SDY_2381 stationary phase/starvation inducible regulatory protein CspD; SMART: Cold shock protein; cold-shock protein 3083882 11777700 EKO11_2956 Escherichia coli KO11FL cold-shock protein YP_005278609.1 3083658 D 595495 CDS YP_005278610.1 378713717 11777701 complement(3083955..3085901) 1 NC_016902.1 KEGG: ebd:ECBD_2715 macrolide transporter ATP-binding/permease protein; PFAM: protein of unknown function DUF214; ABC transporter related; SMART: AAA ATPase; hypothetical protein 3085901 11777701 EKO11_2957 Escherichia coli KO11FL hypothetical protein YP_005278610.1 3083955 R 595495 CDS YP_005278611.1 378713718 11777702 complement(3085898..3087013) 1 NC_016902.1 manually curated; TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sbc:SbBS512_E2451 macrolide transporter subunit MacA; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3087013 11777702 EKO11_2958 Escherichia coli KO11FL RND family efflux transporter MFP subunit YP_005278611.1 3085898 R 595495 CDS YP_005278612.1 378713719 11779615 3087128..3088120 1 NC_016902.1 PFAM: protein of unknown function DUF535; KEGG: eoi:ECO111_0946 hypothetical protein; hypothetical protein 3088120 11779615 EKO11_2959 Escherichia coli KO11FL hypothetical protein YP_005278612.1 3087128 D 595495 CDS YP_005278613.1 378713720 11779616 complement(3088117..3089775) 1 NC_016902.1 KEGG: sfx:S0876 hypothetical protein; hypothetical protein 3089775 11779616 EKO11_2960 Escherichia coli KO11FL hypothetical protein YP_005278613.1 3088117 R 595495 CDS YP_005278614.1 378713721 11777703 3090201..3090896 1 NC_016902.1 KEGG: sfv:SFV_0863 aquaporin Z; TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; MIP family channel protein 3090896 11777703 EKO11_2961 Escherichia coli KO11FL MIP family channel protein YP_005278614.1 3090201 D 595495 CDS YP_005278615.1 378713722 11777704 3091391..3092290 1 NC_016902.1 PFAM: protein of unknown function DUF340 membrane; KEGG: sbo:SBO_0807 putative surface protein; hypothetical protein 3092290 11777704 EKO11_2962 Escherichia coli KO11FL hypothetical protein YP_005278615.1 3091391 D 595495 CDS YP_005278616.1 378713723 11777705 3092434..3094086 1 NC_016902.1 KEGG: eoh:ECO103_0917 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane; hybrid cluster protein 3094086 11777705 EKO11_2963 Escherichia coli KO11FL hybrid cluster protein YP_005278616.1 3092434 D 595495 CDS YP_005278617.1 378713724 11779617 3094098..3095066 1 NC_016902.1 PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sbc:SbBS512_E2459 HCP oxidoreductase, NADH-dependent; ferredoxin 3095066 11779617 EKO11_2964 Escherichia coli KO11FL ferredoxin YP_005278617.1 3094098 D 595495 CDS YP_005278618.1 378713725 11777706 3095199..3096917 1 NC_016902.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: sbc:SbBS512_E2460 pyruvate dehydrogenase; thiamine pyrophosphate TPP-binding domain-containing protein 3096917 11777706 EKO11_2965 Escherichia coli KO11FL thiamine pyrophosphate TPP-binding domain-containing protein YP_005278618.1 3095199 D 595495 CDS YP_005278619.1 378713726 11777707 3096954..3097955 1 NC_016902.1 KEGG: sfv:SFV_0858 L-threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; threonine aldolase 3097955 11777707 EKO11_2966 Escherichia coli KO11FL threonine aldolase YP_005278619.1 3096954 D 595495 CDS YP_005278620.1 378713727 11777708 3097966..3099396 1 NC_016902.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sbc:SbBS512_E2462 NAD dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 3099396 11777708 EKO11_2967 Escherichia coli KO11FL NAD-dependent epimerase/dehydratase YP_005278620.1 3097966 D 595495 CDS YP_005278621.1 378713728 11777709 3099495..3100508 1 NC_016902.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ebd:ECBD_2726 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3100508 11777709 EKO11_2968 Escherichia coli KO11FL NAD-dependent epimerase/dehydratase YP_005278621.1 3099495 D 595495 CDS YP_005278622.1 378713729 11777710 complement(3100505..3101335) 1 NC_016902.1 KEGG: eoj:ECO26_0994 1,6-anhydro-N-acetylmuramic acid-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 3101335 11777710 EKO11_2969 Escherichia coli KO11FL N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_005278622.1 3100505 R 595495 CDS YP_005278623.1 378713730 11779618 complement(3101332..3101655) 1 NC_016902.1 PFAM: protein of unknown function DUF74; KEGG: sdy:SDY_2397 hypothetical protein; hypothetical protein 3101655 11779618 EKO11_2970 Escherichia coli KO11FL hypothetical protein YP_005278623.1 3101332 R 595495 CDS YP_005278624.1 378713731 11777711 3101781..3102296 1 NC_016902.1 KEGG: ebd:ECBD_2729 putative lipoprotein; putative lipoprotein 3102296 11777711 EKO11_2971 Escherichia coli KO11FL putative lipoprotein YP_005278624.1 3101781 D 595495 CDS YP_005278625.1 378713732 11777712 3102514..3103242 1 NC_016902.1 KEGG: sdy:SDY_2404 arginine transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3103242 11777712 EKO11_2972 Escherichia coli KO11FL ABC transporter YP_005278625.1 3102514 D 595495 CDS YP_005278626.1 378713733 11777713 3103260..3103991 1 NC_016902.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: sbc:SbBS512_E2468 arginine ABC transporter, periplasmic arginine-binding protein ArtI; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; cationic amino acid ABC transporter substrate-binding protein 3103991 11777713 EKO11_2973 Escherichia coli KO11FL cationic amino acid ABC transporter substrate-binding protein YP_005278626.1 3103260 D 595495 CDS YP_005278627.1 378713734 11777714 3103998..3104714 1 NC_016902.1 KEGG: sbo:SBO_0796 arginine transporter permease subunit ArtQ; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3104714 11777714 EKO11_2974 Escherichia coli KO11FL polar amino acid ABC transporter inner membrane subunit YP_005278627.1 3103998 D 595495 CDS YP_005278628.1 378713735 11777715 3104714..3105382 1 NC_016902.1 KEGG: sbc:SbBS512_E2470 arginine transporter permease subunit ArtM; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3105382 11777715 EKO11_2975 Escherichia coli KO11FL polar amino acid ABC transporter inner membrane subunit YP_005278628.1 3104714 D 595495 CDS YP_005278629.1 378713736 11777716 3105674..3106405 1 NC_016902.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: sbo:SBO_0794 arginine 3rd transport system periplasmic binding protein; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; cationic amino acid ABC transporter substrate-binding protein 3106405 11777716 EKO11_2976 Escherichia coli KO11FL cationic amino acid ABC transporter substrate-binding protein YP_005278629.1 3105674 D 595495 CDS YP_005278630.1 378713737 11777717 complement(3106580..3107707) 1 NC_016902.1 KEGG: eoh:ECO103_0903 23S rRNA methyluridine methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB; PFAM: (Uracil-5)-methyltransferase; 23S rRNA (uracil-5-)-methyltransferase RumB 3107707 11777717 EKO11_2977 Escherichia coli KO11FL 23S rRNA (uracil-5-)-methyltransferase RumB YP_005278630.1 3106580 R 595495 CDS YP_005278631.1 378713738 11777718 complement(3107748..3108236) 1 NC_016902.1 PFAM: Protein of unknown function DUF2593; KEGG: sdy:SDY_0737 hypothetical protein; hypothetical protein 3108236 11777718 EKO11_2978 Escherichia coli KO11FL hypothetical protein YP_005278631.1 3107748 R 595495 CDS YP_005278632.1 378713739 11777719 complement(3108296..3109141) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2474 putrescine transporter subunit: membrane component of ABC superfamily; binding-protein-dependent transport system inner membrane protein 3109141 11777719 EKO11_2979 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278632.1 3108296 R 595495 CDS YP_005278633.1 378713740 11777720 complement(3109138..3110091) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S0852 putrescine transporter subunit: membrane component of ABC superfamily; binding-protein-dependent transport system inner membrane protein 3110091 11777720 EKO11_2980 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278633.1 3109138 R 595495 CDS YP_005278634.1 378713741 11777721 complement(3110101..3111315) 1 NC_016902.1 SMART: AAA ATPase; manually curated; KEGG: eoh:ECO103_0899 putrescine transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; spermidine/putrescine ABC transporter ATPase 3111315 11777721 EKO11_2981 Escherichia coli KO11FL spermidine/putrescine ABC transporter ATPase YP_005278634.1 3110101 R 595495 CDS YP_005278635.1 378713742 11777722 complement(3111329..3112441) 1 NC_016902.1 PFAM: extracellular solute-binding protein family 1; KEGG: ebd:ECBD_2740 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; extracellular solute-binding protein 3112441 11777722 EKO11_2982 Escherichia coli KO11FL extracellular solute-binding protein YP_005278635.1 3111329 R 595495 CDS YP_005278636.1 378713743 11777723 complement(3112792..3113268) 1 NC_016902.1 PFAM: Sensory transduction regulator, putative; KEGG: sbc:SbBS512_E2479 tetratricopeptide repeat protein; Sensory transduction regulator 3113268 11777723 EKO11_2983 Escherichia coli KO11FL Sensory transduction regulator YP_005278636.1 3112792 R 595495 CDS YP_005278637.1 378713744 11777724 complement(3113356..3114258) 1 NC_016902.1 KEGG: sdy:SDY_0743 ribosomal protein S6 modification protein; TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; alpha-L-glutamate ligase 3114258 11777724 EKO11_2984 Escherichia coli KO11FL alpha-L-glutamate ligase YP_005278637.1 3113356 R 595495 CDS YP_005278638.1 378713745 11779619 complement(3114319..3115041) 1 NC_016902.1 PFAM: nitroreductase; KEGG: sbc:SbBS512_E2481 nitroreductase A; nitroreductase 3115041 11779619 EKO11_2985 Escherichia coli KO11FL nitroreductase YP_005278638.1 3114319 R 595495 CDS YP_005278639.1 378713746 11777725 complement(3115025..3115312) 1 NC_016902.1 PFAM: protein of unknown function DUF1418; KEGG: sbc:SbBS512_E2482 hypothetical protein; hypothetical protein 3115312 11777725 EKO11_2986 Escherichia coli KO11FL hypothetical protein YP_005278639.1 3115025 R 595495 CDS YP_005278640.1 378713747 11777726 3115472..3115729 1 NC_016902.1 KEGG: sbo:SBO_0783 glutaredoxin 1; TIGRFAM: glutaredoxin, GrxA family; PFAM: glutaredoxin; GrxA family glutaredoxin 3115729 11777726 EKO11_2987 Escherichia coli KO11FL GrxA family glutaredoxin YP_005278640.1 3115472 D 595495 CDS YP_005278641.1 378713748 11779620 complement(3115759..3116136) 1 NC_016902.1 KEGG: sdy:SDY_0747 hypothetical protein; hypothetical protein 3116136 11779620 EKO11_2988 Escherichia coli KO11FL hypothetical protein YP_005278641.1 3115759 R 595495 CDS YP_005278642.1 378713749 11777727 3116406..3118091 1 NC_016902.1 manually curated; TIGRFAM: YidE/YbjL duplication; KEGG: sbc:SbBS512_E2485 hypothetical protein; PFAM: YidE/YbjL duplication domain-containing protein; TrkA-C domain protein; YidE/YbjL duplication 3118091 11777727 EKO11_2989 Escherichia coli KO11FL YidE/YbjL duplication YP_005278642.1 3116406 D 595495 CDS YP_005278643.1 378713750 11777728 complement(3118327..3118545) 1 NC_016902.1 PFAM: transcriptional activator Ogr/delta; KEGG: sbc:SbBS512_E2486 phage transcriptional activator, Ogr/delta; transcriptional activator Ogr/delta 3118545 11777728 EKO11_2990 Escherichia coli KO11FL transcriptional activator Ogr/delta YP_005278643.1 3118327 R 595495 CDS YP_005278644.1 378713751 11777729 complement(3118636..3119736) 1 NC_016902.1 KEGG: stt:t3444 putative regulator of late gene expression; putative regulator of late gene expression 3119736 11777729 EKO11_2991 Escherichia coli KO11FL putative regulator of late gene expression YP_005278644.1 3118636 R 595495 CDS YP_005278645.1 378713752 11777730 complement(3119733..3120218) 1 NC_016902.1 PFAM: P2 GpU family protein; KEGG: sbc:SbBS512_E2488 phage protein gpU; P2 GpU family protein 3120218 11777730 EKO11_2992 Escherichia coli KO11FL P2 GpU family protein YP_005278645.1 3119733 R 595495 CDS YP_005278646.1 378713753 11777731 complement(3120215..3123292) 1 NC_016902.1 KEGG: stt:t2662 putative bacteriophage tail protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, TP901 family 3123292 11777731 EKO11_2993 Escherichia coli KO11FL phage tail tape measure protein, TP901 family YP_005278646.1 3120215 R 595495 CDS YP_005278647.1 378713754 11777733 complement(3123419..3123721) 1 NC_016902.1 PFAM: tail E family protein; KEGG: stt:t3440 putative phage tail protein; tail E family protein 3123721 11777733 EKO11_2995 Escherichia coli KO11FL tail E family protein YP_005278647.1 3123419 R 595495 CDS YP_005278648.1 378713755 11777734 complement(3123776..3124291) 1 NC_016902.1 KEGG: sbc:SbBS512_E2492 phage major tail tube protein FII; TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; phage major tail tube protein 3124291 11777734 EKO11_2996 Escherichia coli KO11FL phage major tail tube protein YP_005278648.1 3123776 R 595495 CDS YP_005278649.1 378713756 11777735 complement(3124301..3125473) 1 NC_016902.1 KEGG: sbc:SbBS512_E2493 major tail sheath protein; major tail sheath protein 3125473 11777735 EKO11_2997 Escherichia coli KO11FL major tail sheath protein YP_005278649.1 3124301 R 595495 CDS YP_005278650.1 378713757 11777736 complement(3125616..3126182) 1 NC_016902.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: sbo:SBO_0773 inversion of adjacent DNA; at locus of E14 element; Resolvase domain-containing protein 3126182 11777736 EKO11_2998 Escherichia coli KO11FL Resolvase domain-containing protein YP_005278650.1 3125616 R 595495 CDS YP_005278651.1 378713758 11777737 3126213..3126716 1 NC_016902.1 PFAM: Tail Collar domain protein; KEGG: ebd:ECBD_2751 tail collar domain protein; Tail Collar domain-containing protein 3126716 11777737 EKO11_2999 Escherichia coli KO11FL Tail Collar domain-containing protein YP_005278651.1 3126213 D 595495 CDS YP_005278652.1 378713759 11779621 3126716..3127321 1 NC_016902.1 PFAM: tail assembly chaperone gp38; KEGG: eoh:ECO103_3089 putative tail fiber assembly; tail assembly chaperone gp38 3127321 11779621 EKO11_3000 Escherichia coli KO11FL tail assembly chaperone gp38 YP_005278652.1 3126716 D 595495 CDS YP_005278653.1 378713760 11777738 complement(3127290..3127478) 1 NC_016902.1 KEGG: sus:Acid_5342 hypothetical protein; hypothetical protein 3127478 11777738 EKO11_3001 Escherichia coli KO11FL hypothetical protein YP_005278653.1 3127290 R 595495 CDS YP_005278654.1 378713761 11777740 complement(3128734..3130125) 1 NC_016902.1 KEGG: stt:t3433 variable tail fiber protein; hypothetical protein 3130125 11777740 EKO11_3003 Escherichia coli KO11FL hypothetical protein YP_005278654.1 3128734 R 595495 CDS YP_005278655.1 378713762 11777741 complement(3130122..3130727) 1 NC_016902.1 TIGRFAM: phage tail protein I; KEGG: ebd:ECBD_2755 phage tail protein I; phage tail protein I 3130727 11777741 EKO11_3004 Escherichia coli KO11FL phage tail protein I YP_005278655.1 3130122 R 595495 CDS YP_005278656.1 378713763 11777742 complement(3130720..3131628) 1 NC_016902.1 PFAM: Baseplate J family protein; KEGG: stt:t3431 phage baseplate assembly protein; baseplate J family protein 3131628 11777742 EKO11_3005 Escherichia coli KO11FL baseplate J family protein YP_005278656.1 3130720 R 595495 CDS YP_005278657.1 378713764 11777743 complement(3131615..3131974) 1 NC_016902.1 PFAM: GPW/gp25 family protein; KEGG: stt:t3430 phage baseplate assembly protein; GPW/gp25 family protein 3131974 11777743 EKO11_3006 Escherichia coli KO11FL GPW/gp25 family protein YP_005278657.1 3131615 R 595495 CDS YP_005278658.1 378713765 11777744 complement(3131971..3132549) 1 NC_016902.1 TIGRFAM: phage baseplate assembly protein V; KEGG: ebd:ECBD_2758 phage baseplate assembly protein V; phage baseplate assembly protein V 3132549 11777744 EKO11_3007 Escherichia coli KO11FL phage baseplate assembly protein V YP_005278658.1 3131971 R 595495 CDS YP_005278659.1 378713766 11777745 3132875..3133540 1 NC_016902.1 KEGG: cps:CPS_1939 sensory box sensor histidine kinase/response regulator; hypothetical protein 3133540 11777745 EKO11_3008 Escherichia coli KO11FL hypothetical protein YP_005278659.1 3132875 D 595495 CDS YP_005278660.1 378713767 11779622 complement(3133596..3134042) 1 NC_016902.1 TIGRFAM: phage virion morphogenesis protein; KEGG: stt:t3428 putative phage tail protein; phage virion morphogenesis protein 3134042 11779622 EKO11_3009 Escherichia coli KO11FL phage virion morphogenesis protein YP_005278660.1 3133596 R 595495 CDS YP_005278661.1 378713768 11777746 complement(3134035..3134466) 1 NC_016902.1 KEGG: sed:SeD_A3040 phage tail completion protein R; phage tail completion protein R 3134466 11777746 EKO11_3010 Escherichia coli KO11FL phage tail completion protein R YP_005278661.1 3134035 R 595495 CDS YP_005278662.1 378713769 11779623 complement(3134429..3134602) 1 NC_016902.1 manually curated; KEGG: ebr:ECB_00837 Fels-2 prophage protein; Fels-2 prophage protein 3134602 11779623 EKO11_3011 Escherichia coli KO11FL Fels-2 prophage protein YP_005278662.1 3134429 R 595495 CDS YP_005278663.1 378713770 11779624 complement(3134562..3134990) 1 NC_016902.1 TIGRFAM: phage lysis regulatory protein, LysB family; KEGG: sbo:SBO_0767 putative regulatory protein; phage lysis regulatory protein, LysB family 3134990 11779624 EKO11_3012 Escherichia coli KO11FL phage lysis regulatory protein, LysB family YP_005278663.1 3134562 R 595495 CDS YP_005278664.1 378713771 11777747 complement(3134987..3135364) 1 NC_016902.1 KEGG: stt:t3425 hypothetical protein; hypothetical protein 3135364 11777747 EKO11_3013 Escherichia coli KO11FL hypothetical protein YP_005278664.1 3134987 R 595495 CDS YP_005278665.1 378713772 11777748 complement(3135366..3135878) 1 NC_016902.1 PFAM: glycoside hydrolase family 24; KEGG: sed:SeD_A3043 phage lysozyme; glycoside hydrolase family protein 3135878 11777748 EKO11_3014 Escherichia coli KO11FL glycoside hydrolase family protein YP_005278665.1 3135366 R 595495 CDS YP_005278666.1 378713773 11777749 complement(3135859..3136074) 1 NC_016902.1 KEGG: sbo:SBO_0764 secretory protein; secretory protein 3136074 11777749 EKO11_3015 Escherichia coli KO11FL secretory protein YP_005278666.1 3135859 R 595495 CDS YP_005278667.1 378713774 11777750 complement(3136078..3136281) 1 NC_016902.1 PFAM: tail X family protein; KEGG: sbo:SBO_0763 phage tail protein; tail X family protein 3136281 11777750 EKO11_3016 Escherichia coli KO11FL tail X family protein YP_005278667.1 3136078 R 595495 CDS YP_005278668.1 378713775 11777751 complement(3136281..3136745) 1 NC_016902.1 PFAM: head completion protein; KEGG: sea:SeAg_B2864 phage head completion protein; head completion protein 3136745 11777751 EKO11_3017 Escherichia coli KO11FL head completion protein YP_005278668.1 3136281 R 595495 CDS YP_005278669.1 378713776 11777752 complement(3136841..3137491) 1 NC_016902.1 PFAM: small terminase subunit; KEGG: sed:SeD_A3047 terminase, endonuclease subunit; small terminase subunit 3137491 11777752 EKO11_3018 Escherichia coli KO11FL small terminase subunit YP_005278669.1 3136841 R 595495 CDS YP_005278670.1 378713777 11777753 complement(3137495..3138553) 1 NC_016902.1 KEGG: sed:SeD_A3048 phage major capsid protein, P2 family; TIGRFAM: phage major capsid protein, P2 family; PFAM: major capsid protein P2; phage major capsid protein, P2 family 3138553 11777753 EKO11_3019 Escherichia coli KO11FL phage major capsid protein, P2 family YP_005278670.1 3137495 R 595495 CDS YP_005278671.1 378713778 11777754 complement(3138570..3139403) 1 NC_016902.1 PFAM: capsid scaffolding; KEGG: sbo:SBO_0759 putative capsid scaffolding protein; capsid scaffolding 3139403 11777754 EKO11_3020 Escherichia coli KO11FL capsid scaffolding YP_005278671.1 3138570 R 595495 CDS YP_005278672.1 378713779 11777755 3139546..3141312 1 NC_016902.1 KEGG: stt:t3417 terminase ATPase subunit; terminase ATPase subunit 3141312 11777755 EKO11_3021 Escherichia coli KO11FL terminase ATPase subunit YP_005278672.1 3139546 D 595495 CDS YP_005278673.1 378713780 11777756 3141312..3142337 1 NC_016902.1 KEGG: ebd:ECBD_2765 phage portal protein, PBSX family; TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein; phage portal protein, PBSX family 3142337 11777756 EKO11_3022 Escherichia coli KO11FL phage portal protein, PBSX family YP_005278673.1 3141312 D 595495 CDS YP_005278674.1 378713781 11777757 complement(3142378..3144159) 1 NC_016902.1 PFAM: protein of unknown function DUF262; KEGG: rlt:Rleg2_2200 protein of unknown function DUF262; hypothetical protein 3144159 11777757 EKO11_3023 Escherichia coli KO11FL hypothetical protein YP_005278674.1 3142378 R 595495 CDS YP_005278675.1 378713782 11779625 3144692..3145027 1 NC_016902.1 KEGG: ebd:ECBD_2768 hypothetical protein; hypothetical protein 3145027 11779625 EKO11_3024 Escherichia coli KO11FL hypothetical protein YP_005278675.1 3144692 D 595495 CDS YP_005278676.1 378713783 11777758 complement(3145220..3145453) 1 NC_016902.1 PFAM: DinI family protein; KEGG: sbo:SBO_0753 putative damage-inducible protein; DinI family protein 3145453 11777758 EKO11_3025 Escherichia coli KO11FL DinI family protein YP_005278676.1 3145220 R 595495 CDS YP_005278677.1 378713784 11777759 complement(3145464..3145652) 1 NC_016902.1 KEGG: ebd:ECBD_2770 hypothetical protein; hypothetical protein 3145652 11777759 EKO11_3026 Escherichia coli KO11FL hypothetical protein YP_005278677.1 3145464 R 595495 CDS YP_005278678.1 378713785 11777760 complement(3145805..3148219) 1 NC_016902.1 PFAM: replication gene A; KEGG: ebr:ECB_00825 putative replication protein for prophage; replication protein A 3148219 11777760 EKO11_3027 Escherichia coli KO11FL replication protein A YP_005278678.1 3145805 R 595495 CDS YP_005278679.1 378713786 11777761 complement(3148216..3149073) 1 NC_016902.1 KEGG: sed:SeD_A3058 retron adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 3149073 11777761 EKO11_3028 Escherichia coli KO11FL DNA adenine methylase YP_005278679.1 3148216 R 595495 CDS YP_005278680.1 378713787 11777762 complement(3149070..3149297) 1 NC_016902.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: stt:t3408 hypothetical protein; TraR/DksA family transcriptional regulator 3149297 11777762 EKO11_3029 Escherichia coli KO11FL TraR/DksA family transcriptional regulator YP_005278680.1 3149070 R 595495 CDS YP_005278681.1 378713788 11777763 complement(3149297..3149530) 1 NC_016902.1 KEGG: ebr:ECB_00822 hypothetical protein; hypothetical protein 3149530 11777763 EKO11_3030 Escherichia coli KO11FL hypothetical protein YP_005278681.1 3149297 R 595495 CDS YP_005278682.1 378713789 11777764 complement(3149598..3149939) 1 NC_016902.1 KEGG: stt:t3406 hypothetical protein; hypothetical protein 3149939 11777764 EKO11_3031 Escherichia coli KO11FL hypothetical protein YP_005278682.1 3149598 R 595495 CDS YP_005278683.1 378713790 11777765 3150021..3150269 1 NC_016902.1 KEGG: pop:POPTR_873790 hypothetical protein; hypothetical protein 3150269 11777765 EKO11_3032 Escherichia coli KO11FL hypothetical protein YP_005278683.1 3150021 D 595495 CDS YP_005278684.1 378713791 11777766 complement(3150355..3150651) 1 NC_016902.1 KEGG: ebr:ECB_00820 hypothetical protein; hypothetical protein 3150651 11777766 EKO11_3033 Escherichia coli KO11FL hypothetical protein YP_005278684.1 3150355 R 595495 CDS YP_005278685.1 378713792 11777767 complement(3150659..3151168) 1 NC_016902.1 KEGG: eta:ETA_05560 phage regulatory protein; phage regulatory protein 3151168 11777767 EKO11_3034 Escherichia coli KO11FL phage regulatory protein YP_005278685.1 3150659 R 595495 CDS YP_005278686.1 378713793 11777768 complement(3151234..3151437) 1 NC_016902.1 KEGG: ent:Ent638_1343 putative regulator for prophage; putative regulator for prophage 3151437 11777768 EKO11_3035 Escherichia coli KO11FL putative regulator for prophage YP_005278686.1 3151234 R 595495 CDS YP_005278687.1 378713794 11777769 3151497..3152147 1 NC_016902.1 KEGG: ypy:YPK_0883 CI repressor; manually curated; PFAM: CI repressor; CI repressor 3152147 11777769 EKO11_3036 Escherichia coli KO11FL CI repressor YP_005278687.1 3151497 D 595495 CDS YP_005278688.1 378713795 11779626 3152148..3153599 1 NC_016902.1 PFAM: KAP P-loop domain protein; KEGG: sdn:Sden_3526 KAP P-loop; KAP P-loop domain-containing protein 3153599 11779626 EKO11_3037 Escherichia coli KO11FL KAP P-loop domain-containing protein YP_005278688.1 3152148 D 595495 CDS YP_005278689.1 378713796 11779627 3153680..3154732 1 NC_016902.1 PFAM: integrase family protein; KEGG: stt:t3400 bacteriophage integrase; integrase family protein 3154732 11779627 EKO11_3038 Escherichia coli KO11FL integrase family protein YP_005278689.1 3153680 D 595495 CDS YP_005278690.1 378713797 11777770 complement(3154837..3155373) 1 NC_016902.1 PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E2499 transcriptional regulator, TetR family; TetR family transcriptional regulator 3155373 11777770 EKO11_3039 Escherichia coli KO11FL TetR family transcriptional regulator YP_005278690.1 3154837 R 595495 CDS YP_005278691.1 378713798 11777771 3155457..3156665 1 NC_016902.1 KEGG: sbo:SBO_0741 putative DeoR-type transcriptional regulator; manually curated; PFAM: major facilitator superfamily MFS_1; major facilitator superfamily protein 3156665 11777771 EKO11_3040 Escherichia coli KO11FL major facilitator superfamily protein YP_005278691.1 3155457 D 595495 CDS YP_005278692.1 378713799 11777772 3156665..3157480 1 NC_016902.1 KEGG: eoh:ECO103_0888 hypothetical protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; cof family hydrolase 3157480 11777772 EKO11_3041 Escherichia coli KO11FL cof family hydrolase YP_005278692.1 3156665 D 595495 CDS YP_005278693.1 378713800 11777773 3157572..3157850 1 NC_016902.1 KEGG: sfv:SFV_0828 hypothetical protein; hypothetical protein 3157850 11777773 EKO11_3042 Escherichia coli KO11FL hypothetical protein YP_005278693.1 3157572 D 595495 CDS YP_005278694.1 378713801 11777774 complement(3157891..3159123) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoh:ECO103_0886 multidrug efflux system protein Cmr; major facilitator superfamily protein 3159123 11777774 EKO11_3043 Escherichia coli KO11FL major facilitator superfamily protein YP_005278694.1 3157891 R 595495 CDS YP_005278695.1 378713802 11777775 3159408..3160004 1 NC_016902.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sdy:SDY_0843 undecaprenyl pyrophosphate phosphatase; SMART: phosphoesterase PA-phosphatase related; undecaprenyl-diphosphatase 3160004 11777775 EKO11_3044 Escherichia coli KO11FL undecaprenyl-diphosphatase YP_005278695.1 3159408 D 595495 CDS YP_005278696.1 378713803 11777776 3160062..3160820 1 NC_016902.1 KEGG: eoh:ECO103_0884 DNA-binding transcriptional repressor DeoR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 3160820 11777776 EKO11_3045 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005278696.1 3160062 D 595495 CDS YP_005278697.1 378713804 11777777 complement(3160867..3162069) 1 NC_016902.1 KEGG: eok:G2583_1069 penicillin-binding protein 6; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Beta-lactamase 3162069 11777777 EKO11_3046 Escherichia coli KO11FL Beta-lactamase YP_005278697.1 3160867 R 595495 CDS YP_005278698.1 378713805 11777778 3162316..3162942 1 NC_016902.1 PFAM: Glutathione S-transferase domain; KEGG: sfx:S0831 putative transferase; glutathione S-transferase 3162942 11777778 EKO11_3047 Escherichia coli KO11FL glutathione S-transferase YP_005278698.1 3162316 D 595495 CDS YP_005278699.1 378713806 11777779 complement(3162939..3164054) 1 NC_016902.1 KEGG: sbo:SBO_0733 putative dehydrogenase; putative dehydrogenase 3164054 11777779 EKO11_3048 Escherichia coli KO11FL putative dehydrogenase YP_005278699.1 3162939 R 595495 CDS YP_005278700.1 378713807 11777780 complement(3164165..3164548) 1 NC_016902.1 KEGG: sbc:SbBS512_E2509 biofilm formation regulatory protein BssR; biofilm formation regulatory protein BssR 3164548 11777780 EKO11_3049 Escherichia coli KO11FL biofilm formation regulatory protein BssR YP_005278700.1 3164165 R 595495 CDS YP_005278701.1 378713808 11777781 3164761..3166086 1 NC_016902.1 TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: sbo:SBO_0727 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 3166086 11777781 EKO11_3050 Escherichia coli KO11FL MiaB-like tRNA modifying enzyme YliG YP_005278701.1 3164761 D 595495 CDS YP_005278702.1 378713809 11777782 complement(3166133..3167461) 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eok:G2583_1062 hypothetical protein; SMART: GGDEF domain containing protein; diguanylate cyclase 3167461 11777782 EKO11_3051 Escherichia coli KO11FL diguanylate cyclase YP_005278702.1 3166133 R 595495 CDS YP_005278703.1 378713810 11777783 complement(3167469..3169817) 1 NC_016902.1 KEGG: eoh:ECO103_0877 hypothetical protein; PFAM: EAL domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase 3169817 11777783 EKO11_3052 Escherichia coli KO11FL diguanylate phosphodiesterase YP_005278703.1 3167469 R 595495 CDS YP_005278704.1 378713811 11777784 complement(3169995..3170906) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2516 glutathione ABC transporter, permease protein GsiD; binding-protein-dependent transport system inner membrane protein 3170906 11777784 EKO11_3053 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278704.1 3169995 R 595495 CDS YP_005278705.1 378713812 11779628 complement(3170909..3171829) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0756 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 3171829 11779628 EKO11_3054 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005278705.1 3170909 R 595495 CDS YP_005278706.1 378713813 11777785 complement(3171847..3173385) 1 NC_016902.1 PFAM: extracellular solute-binding protein family 5; KEGG: eoi:ECO111_0898 putative peptide transporter subunit; family 5 extracellular solute-binding protein 3173385 11777785 EKO11_3055 Escherichia coli KO11FL family 5 extracellular solute-binding protein YP_005278706.1 3171847 R 595495 CDS YP_005278707.1 378713814 11777786 complement(3173405..3175276) 1 NC_016902.1 KEGG: eoh:ECO103_0873 glutathione transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; ABC transporter 3175276 11777786 EKO11_3056 Escherichia coli KO11FL ABC transporter YP_005278707.1 3173405 R 595495 CDS YP_005278708.1 378713815 11777787 complement(3175263..3176228) 1 NC_016902.1 KEGG: ebd:ECBD_2795 L-asparaginase; PFAM: peptidase T2 asparaginase 2; Beta-aspartyl-peptidase 3176228 11777787 EKO11_3057 Escherichia coli KO11FL Beta-aspartyl-peptidase YP_005278708.1 3175263 R 595495 CDS YP_005278709.1 378713816 11777788 3176432..3177667 1 NC_016902.1 KEGG: eoj:ECO26_0954 molybdopterin biosynthesis protein MoeA; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV; molybdenum cofactor synthesis domain-containing protein 3177667 11777788 EKO11_3058 Escherichia coli KO11FL molybdenum cofactor synthesis domain-containing protein YP_005278709.1 3176432 D 595495 CDS YP_005278710.1 378713817 11777789 3177667..3178416 1 NC_016902.1 KEGG: sfx:S0819 molybdopterin biosynthesis protein MoeB; TIGRFAM: molybdopterin synthase sulfurylase MoeB; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; molybdopterin synthase sulfurylase MoeB 3178416 11777789 EKO11_3059 Escherichia coli KO11FL molybdopterin synthase sulfurylase MoeB YP_005278710.1 3177667 D 595495 CDS YP_005278711.1 378713818 11777790 complement(3178492..3179154) 1 NC_016902.1 TIGRFAM: transaldolase; KEGG: eoh:ECO103_0869 fructose-6-phosphate aldolase; PFAM: Transaldolase; transaldolase 3179154 11777790 EKO11_3060 Escherichia coli KO11FL transaldolase YP_005278711.1 3178492 R 595495 CDS YP_005278712.1 378713819 11777791 3179285..3180184 1 NC_016902.1 TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: ssn:SSON_0806 putative pyruvate formate-lyase 2 activating enzyme; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family 3180184 11777791 EKO11_3061 Escherichia coli KO11FL glycyl-radical enzyme activating protein family YP_005278712.1 3179285 D 595495 CDS YP_005278713.1 378713820 11777792 3180190..3182622 1 NC_016902.1 TIGRFAM: pyruvate formate-lyase; KEGG: eoh:ECO103_0867 putative pyruvate formate lyase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; pyruvate formate-lyase 3182622 11777792 EKO11_3062 Escherichia coli KO11FL pyruvate formate-lyase YP_005278713.1 3180190 D 595495 CDS YP_005278714.1 378713821 11777793 3182768..3183583 1 NC_016902.1 KEGG: eoi:ECO111_0890 putative hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; cof family hydrolase 3183583 11777793 EKO11_3063 Escherichia coli KO11FL cof family hydrolase YP_005278714.1 3182768 D 595495 CDS YP_005278715.1 378713822 11777794 3183735..3185000 1 NC_016902.1 PFAM: protein of unknown function DUF1479; KEGG: ebd:ECBD_2802 protein of unknown function DUF1479; hypothetical protein 3185000 11777794 EKO11_3064 Escherichia coli KO11FL hypothetical protein YP_005278715.1 3183735 D 595495 CDS YP_005278716.1 378713823 11777795 complement(3185256..3186236) 1 NC_016902.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: eoh:ECO103_4940 putative IS621 transposase; transposase IS116/IS110/IS902 family protein 3186236 11777795 EKO11_3065 Escherichia coli KO11FL transposase IS116/IS110/IS902 family protein YP_005278716.1 3185256 R 595495 CDS YP_005278717.1 378713824 11779629 complement(3186515..3188107) 1 NC_016902.1 KEGG: efe:EFER_0963 putative transporter fused subunits of ABC superfamily: ATP-binding components; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3188107 11779629 EKO11_3066 Escherichia coli KO11FL ABC transporter YP_005278717.1 3186515 R 595495 CDS YP_005278718.1 378713825 11777796 3188326..3189246 1 NC_016902.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_0777 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3189246 11777796 EKO11_3067 Escherichia coli KO11FL ErfK/YbiS/YcfS/YnhG family protein YP_005278718.1 3188326 D 595495 CDS YP_005278719.1 378713826 11777797 complement(3189305..3190423) 1 NC_016902.1 PFAM: Citrate transporter; KEGG: ssn:SSON_0797 hypothetical protein; citrate transporter 3190423 11777797 EKO11_3068 Escherichia coli KO11FL citrate transporter YP_005278719.1 3189305 R 595495 CDS YP_005278720.1 378713827 11779630 complement(3190420..3190887) 1 NC_016902.1 KEGG: sbc:SbBS512_E2531 manganese transport regulator MntR; PFAM: iron dependent repressor; SMART: iron dependent repressor; DtxR family iron (metal) dependent repressor 3190887 11779630 EKO11_3069 Escherichia coli KO11FL DtxR family iron (metal) dependent repressor YP_005278720.1 3190420 R 595495 CDS YP_005278721.1 378713828 11777798 3191073..3191201 1 NC_016902.1 KEGG: ebd:ECBD_2807 hypothetical protein; hypothetical protein 3191201 11777798 EKO11_3070 Escherichia coli KO11FL hypothetical protein YP_005278721.1 3191073 D 595495 CDS YP_005278722.1 378713829 11777799 3191473..3193056 1 NC_016902.1 PFAM: sulfatase; KEGG: eoh:ECO103_0851 putative hydrolase, inner membrane; sulfatase 3193056 11777799 EKO11_3071 Escherichia coli KO11FL sulfatase YP_005278722.1 3191473 D 595495 CDS YP_005278723.1 378713830 11777800 complement(3193105..3193620) 1 NC_016902.1 PFAM: virulence-related outer membrane protein; KEGG: sdy:SDY_0781 outer membrane protein X; virulence-related outer membrane protein 3193620 11777800 EKO11_3072 Escherichia coli KO11FL virulence-related outer membrane protein YP_005278723.1 3193105 R 595495 CDS YP_005278724.1 378713831 11777801 3193973..3194860 1 NC_016902.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: eoh:ECO103_0849 threonine and homoserine efflux system; hypothetical protein 3194860 11777801 EKO11_3073 Escherichia coli KO11FL hypothetical protein YP_005278724.1 3193973 D 595495 CDS YP_005278725.1 378713832 11777802 3195159..3195662 1 NC_016902.1 PFAM: Ferritin Dps family protein; KEGG: sdy:SDY_0783 DNA starvation/stationary phase protection protein Dps; ferritin Dps family protein 3195662 11777802 EKO11_3074 Escherichia coli KO11FL ferritin Dps family protein YP_005278725.1 3195159 D 595495 CDS YP_005278726.1 378713833 11777803 3196066..3196812 1 NC_016902.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: sbo:SBO_0702 glutamine ABC transporter periplasmic protein; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; cationic amino acid ABC transporter substrate-binding protein 3196812 11777803 EKO11_3075 Escherichia coli KO11FL cationic amino acid ABC transporter substrate-binding protein YP_005278726.1 3196066 D 595495 CDS YP_005278727.1 378713834 11777804 3196951..3197610 1 NC_016902.1 KEGG: sdy:SDY_0786 glutamine ABC transporter permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3197610 11777804 EKO11_3076 Escherichia coli KO11FL polar amino acid ABC transporter inner membrane subunit YP_005278727.1 3196951 D 595495 CDS YP_005278728.1 378713835 11777805 3197607..3198329 1 NC_016902.1 KEGG: ssn:SSON_0789 glutamine ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3198329 11777805 EKO11_3077 Escherichia coli KO11FL ABC transporter YP_005278728.1 3197607 D 595495 CDS YP_005278729.1 378713836 11777806 3198446..3200671 1 NC_016902.1 PFAM: MscS Mechanosensitive ion channel; KEGG: eoi:ECO111_0869 hypothetical protein; mechanosensitive ion channel MscS 3200671 11777806 EKO11_3078 Escherichia coli KO11FL mechanosensitive ion channel MscS YP_005278729.1 3198446 D 595495 CDS YP_005278730.1 378713837 11777807 complement(3200668..3201594) 1 NC_016902.1 KEGG: sbc:SbBS512_E2543 putative SAM-dependent methyltransferase; PFAM: protein of unknown function DUF890; rRNA (adenine-N(6)-)-methyltransferase 3201594 11777807 EKO11_3079 Escherichia coli KO11FL rRNA (adenine-N(6)-)-methyltransferase YP_005278730.1 3200668 R 595495 CDS YP_005278731.1 378713838 11777808 3201870..3202130 1 NC_016902.1 KEGG: sbc:SbBS512_E2544 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1471; hypothetical protein 3202130 11777808 EKO11_3080 Escherichia coli KO11FL hypothetical protein YP_005278731.1 3201870 D 595495 CDS YP_005278732.1 378713839 11779631 3202395..3204677 1 NC_016902.1 KEGG: eoh:ECO103_0841 catecholate siderophore receptor Fiu; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; TonB-dependent siderophore receptor 3204677 11779631 EKO11_3081 Escherichia coli KO11FL TonB-dependent siderophore receptor YP_005278732.1 3202395 D 595495 CDS YP_005278733.1 378713840 11777809 3204722..3205396 1 NC_016902.1 KEGG: ebd:ECBD_2819 putative hydroxylase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; 2OG-Fe(II) oxygenase 3205396 11777809 EKO11_3082 Escherichia coli KO11FL 2OG-Fe(II) oxygenase YP_005278733.1 3204722 D 595495 CDS YP_005278734.1 378713841 11777810 3205470..3205736 1 NC_016902.1 KEGG: ssn:SSON_0782 hypothetical protein; TraR/DksA family transcriptional regulator 3205736 11777810 EKO11_3083 Escherichia coli KO11FL TraR/DksA family transcriptional regulator YP_005278734.1 3205470 D 595495 CDS YP_005278735.1 378713842 11777811 3206001..3206261 1 NC_016902.1 PFAM: protein of unknown function DUF1471; KEGG: sfv:SFV_0785 hypothetical protein; hypothetical protein 3206261 11777811 EKO11_3084 Escherichia coli KO11FL hypothetical protein YP_005278735.1 3206001 D 595495 CDS YP_005278736.1 378713843 11777812 complement(3206490..3207575) 1 NC_016902.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: ssn:SSON_0780 hypothetical protein; malate/L-lactate dehydrogenase 3207575 11777812 EKO11_3085 Escherichia coli KO11FL malate/L-lactate dehydrogenase YP_005278736.1 3206490 R 595495 CDS YP_005278737.1 378713844 11777813 complement(3207716..3208678) 1 NC_016902.1 PFAM: Glycosyl transferase, family 3-like; KEGG: eoh:ECO103_0836 glycosyl transferase family protein; glycosyl transferase family protein 3208678 11777813 EKO11_3086 Escherichia coli KO11FL glycosyl transferase family protein YP_005278737.1 3207716 R 595495 CDS YP_005278738.1 378713845 11779632 complement(3208706..3210991) 1 NC_016902.1 SMART: helicase c2; DEAD-like helicase ; Helicase-like, DEXD box c2 type; KEGG: sfv:SFV_0781 ATP-dependent DNA helicase DinG; helicase c2 3210991 11779632 EKO11_3087 Escherichia coli KO11FL helicase c2 YP_005278738.1 3208706 R 595495 CDS YP_005278739.1 378713846 11777814 3211009..3211458 1 NC_016902.1 PFAM: Conserved hypothetical protein CHP02464; KEGG: efe:EFER_2310 hypothetical protein; hypothetical protein 3211458 11777814 EKO11_3088 Escherichia coli KO11FL hypothetical protein YP_005278739.1 3211009 D 595495 CDS YP_005278740.1 378713847 11777815 complement(3211690..3213054) 1 NC_016902.1 KEGG: ebd:ECBD_2826 ATP-dependent RNA helicase RhlE; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 3213054 11777815 EKO11_3089 Escherichia coli KO11FL DEAD/DEAH box helicase YP_005278740.1 3211690 R 595495 CDS YP_005278741.1 378713848 11777816 3213283..3213954 1 NC_016902.1 PFAM: Transcriptional regulator TetR ; regulatory protein TetR; KEGG: sdy:SDY_0807 putative DNA-binding transcriptional regulator; Transcriptional regulator TetR 3213954 11777816 EKO11_3090 Escherichia coli KO11FL Transcriptional regulator TetR YP_005278741.1 3213283 D 595495 CDS YP_005278742.1 378713849 11777817 3213957..3214952 1 NC_016902.1 PFAM: secretion protein HlyD family protein; KEGG: eoh:ECO103_0831 hypothetical protein; secretion protein HlyD family protein 3214952 11777817 EKO11_3091 Escherichia coli KO11FL secretion protein HlyD family protein YP_005278742.1 3213957 D 595495 CDS YP_005278743.1 378713850 11777818 3214945..3216681 1 NC_016902.1 KEGG: eoi:ECO111_0855 fused putative transporter subunits of ABC superfamily: ATP-binding components; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3216681 11777818 EKO11_3092 Escherichia coli KO11FL ABC transporter YP_005278743.1 3214945 D 595495 CDS YP_005278744.1 378713851 11777819 3216674..3217807 1 NC_016902.1 PFAM: ABC-2 type transporter; KEGG: ssn:SSON_0772 hypothetical protein; ABC transporter 3217807 11777819 EKO11_3093 Escherichia coli KO11FL ABC transporter YP_005278744.1 3216674 D 595495 CDS YP_005278745.1 378713852 11779633 3217818..3218924 1 NC_016902.1 PFAM: ABC-2 type transporter; KEGG: sbc:SbBS512_E2561 ABC-2 type transporter, permease protein; ABC transporter 3218924 11779633 EKO11_3094 Escherichia coli KO11FL ABC transporter YP_005278745.1 3217818 D 595495 CDS YP_005278746.1 378713853 11777820 complement(3218886..3219296) 1 NC_016902.1 KEGG: sbc:SbBS512_E2560 hypothetical protein; hypothetical protein 3219296 11777820 EKO11_3095 Escherichia coli KO11FL hypothetical protein YP_005278746.1 3218886 R 595495 CDS YP_005278747.1 378713854 11777821 3219429..3220190 1 NC_016902.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ssn:SSON_0769 hypothetical protein; endonuclease/exonuclease/phosphatase 3220190 11777821 EKO11_3096 Escherichia coli KO11FL endonuclease/exonuclease/phosphatase YP_005278747.1 3219429 D 595495 CDS YP_005278748.1 378713855 11777822 3220187..3221428 1 NC_016902.1 KEGG: eok:G2583_1017 putative cardiolipin synthetase YbhO; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; phospholipase D/Transphosphatidylase 3221428 11777822 EKO11_3097 Escherichia coli KO11FL phospholipase D/Transphosphatidylase YP_005278748.1 3220187 D 595495 CDS YP_005278749.1 378713856 11777823 3221428..3222384 1 NC_016902.1 KEGG: eoh:ECO103_0824 hypothetical protein; hypothetical protein 3222384 11777823 EKO11_3098 Escherichia coli KO11FL hypothetical protein YP_005278749.1 3221428 D 595495 CDS YP_005278750.1 378713857 11777824 complement(3222420..3223133) 1 NC_016902.1 PFAM: protein of unknown function UPF0005; KEGG: eoi:ECO111_0848 hypothetical protein; hypothetical protein 3223133 11777824 EKO11_3099 Escherichia coli KO11FL hypothetical protein YP_005278750.1 3222420 R 595495 CDS YP_005278751.1 378713858 11777825 complement(3223338..3224123) 1 NC_016902.1 KEGG: sbc:SbBS512_E2566 hypothetical protein; manually curated; PFAM: protein of unknown function UPF0005; hypothetical protein 3224123 11777825 EKO11_3100 Escherichia coli KO11FL hypothetical protein YP_005278751.1 3223338 R 595495 CDS YP_005278752.1 378713859 11777826 complement(3224179..3224631) 1 NC_016902.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ssn:SSON_0764 molybdopterin guanine dinucleotide biosynthesis protein MoaE; molybdopterin biosynthesis protein MoaE 3224631 11777826 EKO11_3101 Escherichia coli KO11FL molybdopterin biosynthesis protein MoaE YP_005278752.1 3224179 R 595495 CDS YP_005278753.1 378713860 11777827 complement(3224633..3224878) 1 NC_016902.1 KEGG: sbc:SbBS512_E2568 molybdopterin synthase small subunit; TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; molybdopterin converting factor subunit 1 3224878 11777827 EKO11_3102 Escherichia coli KO11FL molybdopterin converting factor subunit 1 YP_005278753.1 3224633 R 595495 CDS YP_005278754.1 378713861 11777828 complement(3224871..3225356) 1 NC_016902.1 KEGG: sdy:SDY_0823 molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC; molybdenum cofactor biosynthesis protein C 3225356 11777828 EKO11_3103 Escherichia coli KO11FL molybdenum cofactor biosynthesis protein C YP_005278754.1 3224871 R 595495 CDS YP_005278755.1 378713862 11777829 complement(3225359..3225871) 1 NC_016902.1 KEGG: sbc:SbBS512_E2570 molybdenum cofactor biosynthesis protein B; TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; molybdenum cofactor biosynthesis protein B 3225871 11777829 EKO11_3104 Escherichia coli KO11FL molybdenum cofactor biosynthesis protein B YP_005278755.1 3225359 R 595495 CDS YP_005278756.1 378713863 11777830 complement(3225893..3226882) 1 NC_016902.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; KEGG: sbo:SBO_0668 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 3226882 11777830 EKO11_3105 Escherichia coli KO11FL molybdenum cofactor biosynthesis protein A YP_005278756.1 3225893 R 595495 CDS YP_005278757.1 378713864 11779634 3227279..3228187 1 NC_016902.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: sbc:SbBS512_E2572 hypothetical protein; hypothetical protein 3228187 11779634 EKO11_3106 Escherichia coli KO11FL hypothetical protein YP_005278757.1 3227279 D 595495 CDS YP_005278758.1 378713865 11777831 complement(3228379..3230400) 1 NC_016902.1 TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: sbc:SbBS512_E2573 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein; excinuclease ABC subunit B 3230400 11777831 EKO11_3107 Escherichia coli KO11FL excinuclease ABC subunit B YP_005278758.1 3228379 R 595495 CDS YP_005278759.1 378713866 11777832 complement(3230979..3231656) 1 NC_016902.1 TIGRFAM: dethiobiotin synthase; KEGG: ssn:SSON_0757 dithiobiotin synthetase; dethiobiotin synthase 3231656 11777832 EKO11_3108 Escherichia coli KO11FL dethiobiotin synthase YP_005278759.1 3230979 R 595495 CDS YP_005278760.1 378713867 11779635 complement(3231649..3232404) 1 NC_016902.1 KEGG: eoh:ECO103_0812 biotin biosynthesis protein BioC; TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; biotin biosynthesis protein BioC 3232404 11779635 EKO11_3109 Escherichia coli KO11FL biotin biosynthesis protein BioC YP_005278760.1 3231649 R 595495 CDS YP_005278761.1 378713868 11777833 complement(3232391..3233545) 1 NC_016902.1 TIGRFAM: 8-amino-7-oxononanoate synthase; KEGG: eoh:ECO103_0811 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase 3233545 11777833 EKO11_3110 Escherichia coli KO11FL 8-amino-7-oxononanoate synthase YP_005278761.1 3232391 R 595495 CDS YP_005278762.1 378713869 11777834 complement(3233542..3234582) 1 NC_016902.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: ssn:SSON_0754 biotin synthesis; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; biotin synthase 3234582 11777834 EKO11_3111 Escherichia coli KO11FL biotin synthase YP_005278762.1 3233542 R 595495 CDS YP_005278763.1 378713870 11777835 3234669..3235958 1 NC_016902.1 KEGG: eok:G2583_1002 adenosylmethionine-8-amino-7-oxononanoate transaminase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3235958 11777835 EKO11_3112 Escherichia coli KO11FL adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_005278763.1 3234669 D 595495 CDS YP_005278764.1 378713871 11777836 3236017..3236493 1 NC_016902.1 PFAM: PEBP family protein; KEGG: ssn:SSON_0752 putative kinase inhibitor protein; PEBP family protein 3236493 11777836 EKO11_3113 Escherichia coli KO11FL PEBP family protein YP_005278764.1 3236017 D 595495 CDS YP_005278765.1 378713872 11777837 3236645..3237928 1 NC_016902.1 PFAM: Pectinesterase; KEGG: sbc:SbBS512_E2580 putative pectinesterase; pectinesterase 3237928 11777837 EKO11_3114 Escherichia coli KO11FL pectinesterase YP_005278765.1 3236645 D 595495 CDS YP_005278766.1 378713873 11779636 complement(3238162..3240423) 1 NC_016902.1 PFAM: aconitate hydratase domain-containing protein; KEGG: eoh:ECO103_0759 hypothetical protein; aconitate hydratase domain-containing protein 3240423 11779636 EKO11_3115 Escherichia coli KO11FL aconitate hydratase domain-containing protein YP_005278766.1 3238162 R 595495 CDS YP_005278767.1 378713874 11777838 complement(3240606..3242039) 1 NC_016902.1 KEGG: eoh:ECO103_0758 putative transporter; TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; anion transporter 3242039 11777838 EKO11_3116 Escherichia coli KO11FL anion transporter YP_005278767.1 3240606 R 595495 CDS YP_005278768.1 378713875 11777839 complement(3242115..3243167) 1 NC_016902.1 PFAM: protein of unknown function DUF453; KEGG: sfv:SFV_0752 hypothetical protein; hypothetical protein 3243167 11777839 EKO11_3117 Escherichia coli KO11FL hypothetical protein YP_005278768.1 3242115 R 595495 CDS YP_005278769.1 378713876 11777840 3243288..3244304 1 NC_016902.1 KEGG: ssn:SSON_0742 putative transcriptional regulator LysR-type; manually curated; PFAM: LysR substrate-binding; regulatory protein LysR; LysR family transcriptional regulator 3244304 11777840 EKO11_3118 Escherichia coli KO11FL LysR family transcriptional regulator YP_005278769.1 3243288 D 595495 CDS YP_005278770.1 378713877 11777841 complement(3244345..3245340) 1 NC_016902.1 KEGG: sdy:SDY_2011 6-phosphogluconolactonase; 6-phosphogluconolactonase 3245340 11777841 EKO11_3119 Escherichia coli KO11FL 6-phosphogluconolactonase YP_005278770.1 3244345 R 595495 CDS YP_005278771.1 378713878 11777842 3245495..3246313 1 NC_016902.1 KEGG: eok:G2583_0932 phosphatase YbhA; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; cof family hydrolase 3246313 11777842 EKO11_3120 Escherichia coli KO11FL cof family hydrolase YP_005278771.1 3245495 D 595495 CDS YP_005278772.1 378713879 11779637 complement(3246314..3247372) 1 NC_016902.1 TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain-containing protein; KEGG: sbc:SbBS512_E0686 molybdate transporter ATP-binding protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 3247372 11779637 EKO11_3121 Escherichia coli KO11FL molybdate ABC transporter ATPase YP_005278772.1 3246314 R 595495 CDS YP_005278773.1 378713880 11777843 complement(3247375..3248064) 1 NC_016902.1 KEGG: sdy:SDY_0711 molybdate ABC transporter permease protein; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit 3248064 11777843 EKO11_3122 Escherichia coli KO11FL molybdate ABC transporter inner membrane subunit YP_005278773.1 3247375 R 595495 CDS YP_005278774.1 378713881 11777844 complement(3248064..3248837) 1 NC_016902.1 KEGG: sdy:SDY_0710 molybdate transporter periplasmic protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; molybdenum ABC transporter periplasmic molybdate-binding protein 3248837 11777844 EKO11_3123 Escherichia coli KO11FL molybdenum ABC transporter periplasmic molybdate-binding protein YP_005278774.1 3248064 R 595495 CDS YP_005278775.1 378713882 11777846 3249282..3250070 1 NC_016902.1 KEGG: sfv:SFV_0579 DNA-binding transcriptional regulator ModE; TIGRFAM: molybdate transport repressor, ModE; PFAM: TOBE domain-containing protein; regulatory protein LysR; ModE family transcriptional regulator 3250070 11777846 EKO11_3125 Escherichia coli KO11FL ModE family transcriptional regulator YP_005278775.1 3249282 D 595495 CDS YP_005278776.1 378713883 11777847 3250138..3251610 1 NC_016902.1 KEGG: eoh:ECO103_0748 putative molybdenum transport ATP-binding protein ModF; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3251610 11777847 EKO11_3126 Escherichia coli KO11FL ABC transporter YP_005278776.1 3250138 D 595495 CDS YP_005278777.1 378713884 11779638 3251873..3252889 1 NC_016902.1 KEGG: ssn:SSON_0711 UDP-galactose-4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase 3252889 11779638 EKO11_3127 Escherichia coli KO11FL UDP-glucose 4-epimerase YP_005278777.1 3251873 D 595495 CDS YP_005278778.1 378713885 11777848 3252899..3253945 1 NC_016902.1 TIGRFAM: galactose-1-phosphate uridylyltransferase; KEGG: eoi:ECO111_0768 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; galactose-1-phosphate uridylyltransferase 3253945 11777848 EKO11_3128 Escherichia coli KO11FL galactose-1-phosphate uridylyltransferase YP_005278778.1 3252899 D 595495 CDS YP_005278779.1 378713886 11777849 3253949..3255097 1 NC_016902.1 KEGG: ebr:ECB_00710 galactokinase; TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase domain protein; galactokinase 3255097 11777849 EKO11_3129 Escherichia coli KO11FL galactokinase YP_005278779.1 3253949 D 595495 CDS YP_005278780.1 378713887 11779639 3255091..3256131 1 NC_016902.1 TIGRFAM: galactose mutarotase; KEGG: sbc:SbBS512_E0677 aldose 1-epimerase; PFAM: Aldose 1-epimerase; galactose mutarotase 3256131 11779639 EKO11_3130 Escherichia coli KO11FL galactose mutarotase YP_005278780.1 3255091 D 595495 CDS YP_005278781.1 378713888 11779640 3256336..3257088 1 NC_016902.1 TIGRFAM: phosphoglycerate mutase 1 family; KEGG: sbc:SbBS512_E0676 phosphoglyceromutase; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 3257088 11779640 EKO11_3131 Escherichia coli KO11FL phosphoglycerate mutase YP_005278781.1 3256336 D 595495 CDS YP_005278782.1 378713889 11777850 complement(3257246..3258298) 1 NC_016902.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sdy:SDY_0701 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 3258298 11777850 EKO11_3132 Escherichia coli KO11FL phospho-2-dehydro-3-deoxyheptonate aldolase YP_005278782.1 3257246 R 595495 CDS YP_005278783.1 378713890 11777851 3258614..3258994 1 NC_016902.1 KEGG: sfv:SFV_0587 putative homeobox protein; putative homeobox protein 3258994 11777851 EKO11_3133 Escherichia coli KO11FL putative homeobox protein YP_005278783.1 3258614 D 595495 CDS YP_005278784.1 378713891 11777852 3259108..3260049 1 NC_016902.1 KEGG: sdy:SDY_0696 zinc transporter ZitB; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 3260049 11777852 EKO11_3134 Escherichia coli KO11FL cation diffusion facilitator family transporter YP_005278784.1 3259108 D 595495 CDS YP_005278785.1 378713892 11777853 complement(3260046..3260765) 1 NC_016902.1 KEGG: ssn:SSON_0703 required for NMN transport; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 3260765 11777853 EKO11_3135 Escherichia coli KO11FL nicotinamide mononucleotide transporter PnuC YP_005278785.1 3260046 R 595495 CDS YP_005278786.1 378713893 11777854 complement(3260803..3261846) 1 NC_016902.1 TIGRFAM: quinolinate synthetase complex, A subunit; KEGG: eoh:ECO103_0738 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A 3261846 11777854 EKO11_3136 Escherichia coli KO11FL quinolinate synthetase complex subunit A YP_005278786.1 3260803 R 595495 CDS YP_005278787.1 378713894 11777862 complement(3263415..3264206) 1 NC_016902.1 TIGRFAM: tol-pal system protein YbgF; KEGG: sbc:SbBS512_E0664 tol-pal system protein YbgF; tol-pal system protein YbgF 3264206 11777862 EKO11_3137 Escherichia coli KO11FL tol-pal system protein YbgF YP_005278787.1 3263415 R 595495 CDS YP_005278788.1 378713895 11777863 complement(3264216..3264737) 1 NC_016902.1 KEGG: sbc:SbBS512_E0663 peptidoglycan-associated outer membrane lipoprotein; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 3264737 11777863 EKO11_3138 Escherichia coli KO11FL peptidoglycan-associated lipoprotein YP_005278788.1 3264216 R 595495 CDS YP_005278789.1 378713896 11777864 complement(3264772..3266064) 1 NC_016902.1 KEGG: ssn:SSON_0692 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain-containing protein; WD40-like beta Propeller containing protein; Tol-Pal system beta propeller repeat-containing protein TolB 3266064 11777864 EKO11_3139 Escherichia coli KO11FL Tol-Pal system beta propeller repeat-containing protein TolB YP_005278789.1 3264772 R 595495 CDS YP_005278790.1 378713897 11777865 complement(3266197..3267462) 1 NC_016902.1 KEGG: ebd:ECBD_2921 cell envelope integrity inner membrane protein TolA; TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; protein TolA 3267462 11777865 EKO11_3140 Escherichia coli KO11FL protein TolA YP_005278790.1 3266197 R 595495 CDS YP_005278791.1 378713898 11777866 complement(3267527..3267955) 1 NC_016902.1 KEGG: eok:G2583_0905 hypothetical protein; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; protein TolR 3267955 11777866 EKO11_3141 Escherichia coli KO11FL protein TolR YP_005278791.1 3267527 R 595495 CDS YP_005278792.1 378713899 11777867 complement(3267959..3268651) 1 NC_016902.1 KEGG: eok:G2583_0904 inner membrane protein; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein TolQ 3268651 11777867 EKO11_3142 Escherichia coli KO11FL protein TolQ YP_005278792.1 3267959 R 595495 CDS YP_005278793.1 378713900 11779641 complement(3268648..3269052) 1 NC_016902.1 KEGG: sbo:SBO_0595 acyl-CoA thioester hydrolase YbgC; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; tol-pal system-associated acyl-CoA thioesterase 3269052 11779641 EKO11_3143 Escherichia coli KO11FL tol-pal system-associated acyl-CoA thioesterase YP_005278793.1 3268648 R 595495 CDS YP_005278794.1 378713901 11779642 complement(3269202..3269495) 1 NC_016902.1 KEGG: sdy:SDY_0683 hypothetical protein; TIGRFAM: cyd operon protein YbgE; PFAM: Cyd operon protein YbgE; cyd operon protein YbgE 3269495 11779642 EKO11_3144 Escherichia coli KO11FL cyd operon protein YbgE YP_005278794.1 3269202 R 595495 CDS YP_005278795.1 378713902 11777868 complement(3269495..3269608) 1 NC_016902.1 KEGG: sdy:SDY_0682 putative outer membrane lipoprotein; TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; cyd operon protein YbgT 3269608 11777868 EKO11_3145 Escherichia coli KO11FL cyd operon protein YbgT YP_005278795.1 3269495 R 595495 CDS YP_005278796.1 378713903 11777869 complement(3269623..3270762) 1 NC_016902.1 KEGG: sbc:SbBS512_E0655 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 3270762 11777869 EKO11_3146 Escherichia coli KO11FL cytochrome d ubiquinol oxidase, subunit II YP_005278796.1 3269623 R 595495 CDS YP_005278797.1 378713904 11777870 complement(3270778..3272346) 1 NC_016902.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sbc:SbBS512_E0654 cytochrome d ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 3272346 11777870 EKO11_3147 Escherichia coli KO11FL cytochrome bd ubiquinol oxidase subunit I YP_005278797.1 3270778 R 595495 CDS YP_005278798.1 378713905 11777871 complement(3273193..3275826) 1 NC_016902.1 PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; KEGG: eoh:ECO103_0726 alpha-mannosidase; glycoside hydrolase family protein 3275826 11777871 EKO11_3148 Escherichia coli KO11FL glycoside hydrolase family protein YP_005278798.1 3273193 R 595495 CDS YP_005278799.1 378713906 11777872 complement(3275844..3277760) 1 NC_016902.1 KEGG: ebd:ECBD_2930 PTS system 2-O-A-mannosyl-D-glycerate specific transporter subunit IIABC; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; PTS system fructose subfamily transporter subunit IIC 3277760 11777872 EKO11_3149 Escherichia coli KO11FL PTS system fructose subfamily transporter subunit IIC YP_005278799.1 3275844 R 595495 CDS YP_005278800.1 378713907 11777873 3277929..3278651 1 NC_016902.1 KEGG: sbo:SBO_0588 DNA-binding transcriptional repressor MngR; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3278651 11777873 EKO11_3150 Escherichia coli KO11FL GntR family transcriptional regulator YP_005278800.1 3277929 D 595495 CDS YP_005278801.1 378713908 11777874 complement(3278755..3279624) 1 NC_016902.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; KEGG: sbc:SbBS512_E0648 succinyl-CoA synthetase subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein; succinyl-CoA synthetase subunit alpha 3279624 11777874 EKO11_3151 Escherichia coli KO11FL succinyl-CoA synthetase subunit alpha YP_005278801.1 3278755 R 595495 CDS YP_005278802.1 378713909 11777875 complement(3279624..3280790) 1 NC_016902.1 TIGRFAM: succinyl-CoA synthetase, beta subunit; KEGG: ssn:SSON_0679 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta 3280790 11777875 EKO11_3152 Escherichia coli KO11FL succinyl-CoA synthetase subunit beta YP_005278802.1 3279624 R 595495 CDS YP_005278803.1 378713910 11777876 complement(3280884..3282101) 1 NC_016902.1 KEGG: eoh:ECO103_0720 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 3282101 11777876 EKO11_3153 Escherichia coli KO11FL 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_005278803.1 3280884 R 595495 CDS YP_005278804.1 378713911 11777877 complement(3282116..3284917) 1 NC_016902.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; KEGG: sbc:SbBS512_E0645 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component; 2-oxoglutarate dehydrogenase, E1 subunit 3284917 11777877 EKO11_3154 Escherichia coli KO11FL 2-oxoglutarate dehydrogenase, E1 subunit YP_005278804.1 3282116 R 595495 CDS YP_005278805.1 378713912 11777878 complement(3285118..3285834) 1 NC_016902.1 KEGG: sbc:SbBS512_E0643 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 3285834 11777878 EKO11_3155 Escherichia coli KO11FL succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_005278805.1 3285118 R 595495 CDS YP_005278806.1 378713913 11777879 complement(3285850..3287616) 1 NC_016902.1 KEGG: sbo:SBO_0581 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; succinate dehydrogenase, flavoprotein subunit 3287616 11777879 EKO11_3156 Escherichia coli KO11FL succinate dehydrogenase, flavoprotein subunit YP_005278806.1 3285850 R 595495 CDS YP_005278807.1 378713914 11779643 complement(3287616..3287963) 1 NC_016902.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: sdy:SDY_0660 succinate dehydrogenase cytochrome b556 small membrane subunit; succinate dehydrogenase, hydrophobic membrane anchor protein 3287963 11779643 EKO11_3157 Escherichia coli KO11FL succinate dehydrogenase, hydrophobic membrane anchor protein YP_005278807.1 3287616 R 595495 CDS YP_005278808.1 378713915 11777880 complement(3287957..3288361) 1 NC_016902.1 KEGG: sbc:SbBS512_E0640 succinate dehydrogenase cytochrome b556 large membrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit 3288361 11777880 EKO11_3158 Escherichia coli KO11FL succinate dehydrogenase, cytochrome b556 subunit YP_005278808.1 3287957 R 595495 CDS YP_005278809.1 378713916 11779644 3289055..3290338 1 NC_016902.1 KEGG: sbc:SbBS512_E0638 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 3290338 11779644 EKO11_3159 Escherichia coli KO11FL citrate synthase I YP_005278809.1 3289055 D 595495 CDS YP_005278810.1 378713917 11779645 3290729..3291295 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ssn:SSON_0670 putative fimbrial-like protein; fimbrial protein domain-containing protein 3291295 11779645 EKO11_3160 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005278810.1 3290729 D 595495 CDS YP_005278811.1 378713918 11777881 3291355..3293805 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoi:ECO111_0735 putative outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 3293805 11777881 EKO11_3161 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005278811.1 3291355 D 595495 CDS YP_005278812.1 378713919 11777882 3293820..3294551 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sbc:SbBS512_E0634 periplasmic pilus chaperone family protein; Pili assembly chaperone, N-terminal protein 3294551 11777882 EKO11_3162 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005278812.1 3293820 D 595495 CDS YP_005278813.1 378713920 11777883 3294548..3295609 1 NC_016902.1 KEGG: ssn:SSON_0667 hypothetical protein; hypothetical protein 3295609 11777883 EKO11_3163 Escherichia coli KO11FL hypothetical protein YP_005278813.1 3294548 D 595495 CDS YP_005278814.1 378713921 11777884 3295761..3296807 1 NC_016902.1 KEGG: ebw:BWG_0574 putative regulator; TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase; membrane protein AbrB 3296807 11777884 EKO11_3164 Escherichia coli KO11FL membrane protein AbrB YP_005278814.1 3295761 D 595495 CDS YP_005278815.1 378713922 11777885 complement(3296804..3297595) 1 NC_016902.1 PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: eok:G2583_0869 endonuclease VIII (DNA glycosylase/AP lyase Nei) (DNA-(apurinic or apyrimidinic site) lyase Nei); DNA glycosylase/AP lyase 3297595 11777885 EKO11_3165 Escherichia coli KO11FL DNA glycosylase/AP lyase YP_005278815.1 3296804 R 595495 CDS YP_005278816.1 378713923 11777886 complement(3297631..3298365) 1 NC_016902.1 PFAM: LamB/YcsF family protein; KEGG: sbo:SBO_0572 LamB/YcsF family protein; LamB/YcsF family protein 3298365 11777886 EKO11_3166 Escherichia coli KO11FL LamB/YcsF family protein YP_005278816.1 3297631 R 595495 CDS YP_005278817.1 378713924 11777887 complement(3298355..3299287) 1 NC_016902.1 SMART: Allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; KEGG: sbc:SbBS512_E0629 allophanate hydrolase, subunit 2; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein 3299287 11777887 EKO11_3167 Escherichia coli KO11FL urea amidolyase-like protein YP_005278817.1 3298355 R 595495 CDS YP_005278818.1 378713925 11777888 complement(3299281..3299937) 1 NC_016902.1 KEGG: ebd:ECBD_2950 allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 3299937 11777888 EKO11_3168 Escherichia coli KO11FL allophanate hydrolase subunit 1 YP_005278818.1 3299281 R 595495 CDS YP_005278819.1 378713926 11777889 complement(3299960..3300703) 1 NC_016902.1 PFAM: protein of unknown function DUF34; KEGG: sbc:SbBS512_E0627 putative hydrolase-oxidase; hypothetical protein 3300703 11777889 EKO11_3169 Escherichia coli KO11FL hypothetical protein YP_005278819.1 3299960 R 595495 CDS YP_005278820.1 378713927 11777890 3300974..3302455 1 NC_016902.1 KEGG: sfx:S0601 putative transport protein; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; amino acid/peptide transporter 3302455 11777890 EKO11_3170 Escherichia coli KO11FL amino acid/peptide transporter YP_005278820.1 3300974 D 595495 CDS YP_005278821.1 378713928 11777891 complement(3302497..3303915) 1 NC_016902.1 KEGG: ebd:ECBD_2953 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; deoxyribodipyrimidine photo-lyase 3303915 11777891 EKO11_3171 Escherichia coli KO11FL deoxyribodipyrimidine photo-lyase YP_005278821.1 3302497 R 595495 CDS YP_005278822.1 378713929 11777892 complement(3303912..3304421) 1 NC_016902.1 PFAM: protein of unknown function DUF1722; KEGG: ebd:ECBD_2954 hypothetical protein; hypothetical protein 3304421 11777892 EKO11_3172 Escherichia coli KO11FL hypothetical protein YP_005278822.1 3303912 R 595495 CDS YP_005278823.1 378713930 11777895 complement(3305936..3306505) 1 NC_016902.1 KEGG: eoj:ECO26_0766 hypothetical protein; hypothetical protein 3306505 11777895 EKO11_3175 Escherichia coli KO11FL hypothetical protein YP_005278823.1 3305936 R 595495 CDS YP_005278824.1 378713931 11777896 complement(3306502..3307935) 1 NC_016902.1 PFAM: RHS protein; YD repeat-containing protein; KEGG: ebr:ECB_00660 conserved hypothetical protein, rhs-like protein; RHS protein 3307935 11777896 EKO11_3176 Escherichia coli KO11FL RHS protein YP_005278824.1 3306502 R 595495 CDS YP_005278825.1 378713932 11777897 complement(3308053..3308379) 1 NC_016902.1 KEGG: ebd:ECBD_2959 hypothetical protein; hypothetical protein 3308379 11777897 EKO11_3177 Escherichia coli KO11FL hypothetical protein YP_005278825.1 3308053 R 595495 CDS YP_005278826.1 378713933 11777898 complement(3308379..3312572) 1 NC_016902.1 KEGG: eoj:ECO26_0763 RhsC core protein with extension; TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein 3312572 11777898 EKO11_3178 Escherichia coli KO11FL YD repeat protein YP_005278826.1 3308379 R 595495 CDS YP_005278827.1 378713934 11779646 complement(3312815..3313021) 1 NC_016902.1 PFAM: Protein of unknown function DUF2517; KEGG: sdy:SDY_0635 hypothetical protein; hypothetical protein 3313021 11779646 EKO11_3179 Escherichia coli KO11FL hypothetical protein YP_005278827.1 3312815 R 595495 CDS YP_005278828.1 378713935 11779647 3313220..3313423 1 NC_016902.1 manually curated; TIGRFAM: K+-transporting ATPase, F subunit; KEGG: sbc:SbBS512_E0550 K+-transporting ATPase, F subunit; PFAM: K+transporting ATPase F subunit; K+-transporting ATPase subunit F 3313423 11779647 EKO11_3180 Escherichia coli KO11FL K+-transporting ATPase subunit F YP_005278828.1 3313220 D 595495 CDS YP_005278829.1 378713936 11777899 3313423..3315096 1 NC_016902.1 TIGRFAM: potassium-transporting ATPase, A subunit; KEGG: ebd:ECBD_2962 potassium-transporting ATPase subunit A; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A 3315096 11777899 EKO11_3181 Escherichia coli KO11FL potassium-transporting ATPase subunit A YP_005278829.1 3313423 D 595495 CDS YP_005278830.1 378713937 11777900 3315119..3317167 1 NC_016902.1 KEGG: eoh:ECO103_0691 potassium-transporting ATPase subunit B; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; K+-transporting ATPase subunit B 3317167 11777900 EKO11_3182 Escherichia coli KO11FL K+-transporting ATPase subunit B YP_005278830.1 3315119 D 595495 CDS YP_005278831.1 378713938 11777901 3317176..3317748 1 NC_016902.1 TIGRFAM: potassium-transporting ATPase, C subunit; KEGG: ebd:ECBD_2964 potassium-transporting ATPase subunit C; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C 3317748 11777901 EKO11_3183 Escherichia coli KO11FL potassium-transporting ATPase subunit C YP_005278831.1 3317176 D 595495 CDS YP_005278832.1 378713939 11777902 3317741..3320425 1 NC_016902.1 KEGG: eoh:ECO103_0689 sensor protein KdpD; PFAM: Osmosensitive K channel His kinase sensor; UspA domain-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; osmosensitive K channel His kinase sensor 3320425 11777902 EKO11_3184 Escherichia coli KO11FL osmosensitive K channel His kinase sensor YP_005278832.1 3317741 D 595495 CDS YP_005278833.1 378713940 11777903 3320422..3321099 1 NC_016902.1 KEGG: eoh:ECO103_0688 DNA-binding transcriptional activator KdpE; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 3321099 11777903 EKO11_3185 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005278833.1 3320422 D 595495 CDS YP_005278834.1 378713941 11777904 3321374..3321478 1 NC_016902.1 KEGG: etr:ETAE_0258 hypothetical protein; hypothetical protein 3321478 11777904 EKO11_3186 Escherichia coli KO11FL hypothetical protein YP_005278834.1 3321374 D 595495 CDS YP_005278835.1 378713942 11777905 3321789..3323987 1 NC_016902.1 KEGG: eoh:ECO103_0687 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; Ornithine decarboxylase 3323987 11777905 EKO11_3187 Escherichia coli KO11FL Ornithine decarboxylase YP_005278835.1 3321789 D 595495 CDS YP_005278836.1 378713943 11777906 3323984..3325303 1 NC_016902.1 KEGG: ssn:SSON_0643 putrescine transporter; TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; arginine/ornithine antiporter 3325303 11777906 EKO11_3188 Escherichia coli KO11FL arginine/ornithine antiporter YP_005278836.1 3323984 D 595495 CDS YP_005278837.1 378713944 11777907 complement(3325359..3326999) 1 NC_016902.1 KEGG: efe:EFER_2420 phosphoglucomutase; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase, alpha-D-glucose phosphate-specific 3326999 11777907 EKO11_3189 Escherichia coli KO11FL phosphoglucomutase, alpha-D-glucose phosphate-specific YP_005278837.1 3325359 R 595495 CDS YP_005278838.1 378713945 11777908 complement(3327025..3327570) 1 NC_016902.1 PFAM: SeqA family protein; KEGG: eoh:ECO103_0684 replication initiation regulator SeqA; SeqA family protein 3327570 11777908 EKO11_3190 Escherichia coli KO11FL SeqA family protein YP_005278838.1 3327025 R 595495 CDS YP_005278839.1 378713946 11777909 3327755..3328519 1 NC_016902.1 PFAM: alpha/beta hydrolase fold; KEGG: sbo:SBO_0548 hypothetical protein; alpha/beta hydrolase fold protein 3328519 11777909 EKO11_3191 Escherichia coli KO11FL alpha/beta hydrolase fold protein YP_005278839.1 3327755 D 595495 CDS YP_005278840.1 378713947 11777910 3328590..3328952 1 NC_016902.1 KEGG: sdy:SDY_0625 LexA regulated protein; LexA regulated protein 3328952 11777910 EKO11_3192 Escherichia coli KO11FL LexA regulated protein YP_005278840.1 3328590 D 595495 CDS YP_005278841.1 378713948 11777911 3329092..3329622 1 NC_016902.1 KEGG: sdy:SDY_0624 flavodoxin FldA; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; flavodoxin 3329622 11777911 EKO11_3193 Escherichia coli KO11FL flavodoxin YP_005278841.1 3329092 D 595495 CDS YP_005278842.1 378713949 11777912 3329911..3330357 1 NC_016902.1 PFAM: ferric-uptake regulator; KEGG: sdy:SDY_0623 ferric uptake regulator; ferric uptake regulator family protein 3330357 11777912 EKO11_3194 Escherichia coli KO11FL ferric uptake regulator family protein YP_005278842.1 3329911 D 595495 CDS YP_005278843.1 378713950 11777913 complement(3330441..3330767) 1 NC_016902.1 KEGG: eoh:ECO103_0678 putative lipoprotein; putative lipoprotein 3330767 11777913 EKO11_3195 Escherichia coli KO11FL putative lipoprotein YP_005278843.1 3330441 R 595495 CDS YP_005278844.1 378713951 11777914 complement(3330817..3332223) 1 NC_016902.1 PFAM: outer membrane porin; KEGG: ebd:ECBD_2980 outer membrane porin; outer membrane porin 3332223 11777914 EKO11_3196 Escherichia coli KO11FL outer membrane porin YP_005278844.1 3330817 R 595495 CDS YP_005278845.1 378713952 11777915 complement(3332669..3334333) 1 NC_016902.1 KEGG: ssn:SSON_0634 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; glutaminyl-tRNA synthetase 3334333 11777915 EKO11_3197 Escherichia coli KO11FL glutaminyl-tRNA synthetase YP_005278845.1 3332669 R 595495 CDS YP_005278846.1 378713953 11777916 complement(3334535..3336481) 1 NC_016902.1 TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-like IIB subunint; PTS system, glucose subfamily, IIA subunit; KEGG: eoi:ECO111_0698 PTS system N-acetyl glucosamine specific transporter subunits IIABC; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; sugar-specific permease EIIA 1 domain; PTS system N-acetylglucosamine-specific transporter subunit IIBC 3336481 11777916 EKO11_3198 Escherichia coli KO11FL PTS system N-acetylglucosamine-specific transporter subunit IIBC YP_005278846.1 3334535 R 595495 CDS YP_005278847.1 378713954 11779648 3336814..3337614 1 NC_016902.1 KEGG: sbc:SbBS512_E0573 glucosamine-6-phosphate deaminase; TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 3337614 11779648 EKO11_3199 Escherichia coli KO11FL glucosamine-6-phosphate isomerase YP_005278847.1 3336814 D 595495 CDS YP_005278848.1 378713955 11779649 3337673..3338821 1 NC_016902.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: eok:G2583_0838 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 3338821 11779649 EKO11_3200 Escherichia coli KO11FL N-acetylglucosamine-6-phosphate deacetylase YP_005278848.1 3337673 D 595495 CDS YP_005278849.1 378713956 11777917 3338830..3340050 1 NC_016902.1 PFAM: ROK family protein; regulatory protein MarR; KEGG: sdy:SDY_0610 transcriptional repressor of N-acetylglucosamine operon; ROK family protein 3340050 11777917 EKO11_3201 Escherichia coli KO11FL ROK family protein YP_005278849.1 3338830 D 595495 CDS YP_005278850.1 378713957 11777918 3340098..3340850 1 NC_016902.1 KEGG: sdy:SDY_0609 UMP phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 3340850 11777918 EKO11_3202 Escherichia coli KO11FL HAD-superfamily hydrolase YP_005278850.1 3340098 D 595495 CDS YP_005278851.1 378713958 11777919 3341107..3342771 1 NC_016902.1 KEGG: sfv:SFV_0657 asparagine synthetase B; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; asparagine synthase 3342771 11777919 EKO11_3203 Escherichia coli KO11FL asparagine synthase YP_005278851.1 3341107 D 595495 CDS YP_005278852.1 378713959 11777926 complement(3344009..3345184) 1 NC_016902.1 KEGG: eoh:ECO103_0669 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase 3345184 11777926 EKO11_3204 Escherichia coli KO11FL UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase YP_005278852.1 3344009 R 595495 CDS YP_005278853.1 378713960 11777927 3345330..3346754 1 NC_016902.1 TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: sdy:SDY_0597 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase enzyme MiaB 3346754 11777927 EKO11_3205 Escherichia coli KO11FL tRNA-i(6)A37 thiotransferase enzyme MiaB YP_005278853.1 3345330 D 595495 CDS YP_005278854.1 378713961 11777928 3346868..3347947 1 NC_016902.1 PFAM: PhoH family protein; KEGG: sdy:SDY_0596 putative ATP-binding protein in pho regulon; PhoH family protein 3347947 11777928 EKO11_3206 Escherichia coli KO11FL PhoH family protein YP_005278854.1 3346868 D 595495 CDS YP_005278855.1 378713962 11777929 3347944..3348411 1 NC_016902.1 PFAM: protein of unknown function UPF0054; KEGG: sbo:SBO_0523 putative metalloprotease; hypothetical protein 3348411 11777929 EKO11_3207 Escherichia coli KO11FL hypothetical protein YP_005278855.1 3347944 D 595495 CDS YP_005278856.1 378713963 11777930 3348501..3349379 1 NC_016902.1 PFAM: transporter-associated region; CBS domain containing protein; KEGG: sdy:SDY_0594 putative transport protein; transporter-associated protein 3349379 11777930 EKO11_3208 Escherichia coli KO11FL transporter-associated protein YP_005278856.1 3348501 D 595495 CDS YP_005278857.1 378713964 11779651 3349404..3350942 1 NC_016902.1 KEGG: eoh:ECO103_0664 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 3350942 11779651 EKO11_3209 Escherichia coli KO11FL apolipoprotein N-acyltransferase YP_005278857.1 3349404 D 595495 CDS YP_005278858.1 378713965 11777932 3353351..3354259 1 NC_016902.1 KEGG: sdy:SDY_0592 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 3354259 11777932 EKO11_3211 Escherichia coli KO11FL family 3 extracellular solute-binding protein YP_005278858.1 3353351 D 595495 CDS YP_005278859.1 378713966 11777933 3354429..3355169 1 NC_016902.1 KEGG: ssn:SSON_0608 glutamate/aspartate transport system permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3355169 11777933 EKO11_3212 Escherichia coli KO11FL polar amino acid ABC transporter inner membrane subunit YP_005278859.1 3354429 D 595495 CDS YP_005278860.1 378713967 11779652 3355169..3355843 1 NC_016902.1 KEGG: sdy:SDY_0588 glutamate/aspartate transport system permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3355843 11779652 EKO11_3213 Escherichia coli KO11FL polar amino acid ABC transporter inner membrane subunit YP_005278860.1 3355169 D 595495 CDS YP_005278861.1 378713968 11777934 3355843..3356568 1 NC_016902.1 KEGG: ssn:SSON_0606 ATP-binding protein of glutamate/aspartate transport system; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3356568 11777934 EKO11_3214 Escherichia coli KO11FL ABC transporter YP_005278861.1 3355843 D 595495 CDS YP_005278862.1 378713969 11777935 3356686..3357621 1 NC_016902.1 KEGG: ssn:SSON_0605 ribonucleoside hydrolase 1; PFAM: Inosine/uridine-preferring nucleoside hydrolase; ribosylpyrimidine nucleosidase 3357621 11777935 EKO11_3215 Escherichia coli KO11FL ribosylpyrimidine nucleosidase YP_005278862.1 3356686 D 595495 CDS YP_005278863.1 378713970 11779653 3357705..3359375 1 NC_016902.1 PFAM: Heat shock protein 70; KEGG: sfv:SFV_0676 putative DnaK protein; Heat shock protein 70 3359375 11779653 EKO11_3216 Escherichia coli KO11FL Heat shock protein 70 YP_005278863.1 3357705 D 595495 CDS YP_005278864.1 378713971 11777936 complement(3359435..3360886) 1 NC_016902.1 PFAM: heat shock protein DnaJ domain protein; KEGG: eoh:ECO103_0656 Hsc56 co-chaperone of HscC; heat shock protein DnaJ domain-containing protein 3360886 11777936 EKO11_3217 Escherichia coli KO11FL heat shock protein DnaJ domain-containing protein YP_005278864.1 3359435 R 595495 CDS YP_005278865.1 378713972 11777937 complement(3360883..3361590) 1 NC_016902.1 KEGG: eoh:ECO103_0655 putative tRNA ligase; putative tRNA ligase 3361590 11777937 EKO11_3218 Escherichia coli KO11FL putative tRNA ligase YP_005278865.1 3360883 R 595495 CDS YP_005278866.1 378713973 11777938 3361691..3362245 1 NC_016902.1 KEGG: eoh:ECO103_0654 hypothetical protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 3362245 11777938 EKO11_3219 Escherichia coli KO11FL Sel1 domain-containing protein repeat-containing protein YP_005278866.1 3361691 D 595495 CDS YP_005278867.1 378713974 11777939 complement(3362255..3363682) 1 NC_016902.1 KEGG: ssn:SSON_0600 putative enzyme of polynucleotide modification; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 3363682 11777939 EKO11_3220 Escherichia coli KO11FL heat shock protein DnaJ domain-containing protein YP_005278867.1 3362255 R 595495 CDS YP_005278868.1 378713975 11777940 complement(3363679..3364386) 1 NC_016902.1 KEGG: ebw:BWG_0516 hypothetical protein; hypothetical protein 3364386 11777940 EKO11_3221 Escherichia coli KO11FL hypothetical protein YP_005278868.1 3363679 R 595495 CDS YP_005278869.1 378713976 11779654 3364550..3365527 1 NC_016902.1 KEGG: sbo:SBO_0508 hypothetical protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 3365527 11779654 EKO11_3222 Escherichia coli KO11FL Sel1 domain-containing protein repeat-containing protein YP_005278869.1 3364550 D 595495 CDS YP_005278870.1 378713977 11777941 complement(3365597..3366079) 1 NC_016902.1 PFAM: protein of unknown function DUF1451; KEGG: sdy:SDY_0567 hypothetical protein; hypothetical protein 3366079 11777941 EKO11_3223 Escherichia coli KO11FL hypothetical protein YP_005278870.1 3365597 R 595495 CDS YP_005278871.1 378713978 11777942 3366314..3368896 1 NC_016902.1 KEGG: efe:EFER_2464 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; leucyl-tRNA synthetase 3368896 11777942 EKO11_3224 Escherichia coli KO11FL leucyl-tRNA synthetase YP_005278871.1 3366314 D 595495 CDS YP_005278872.1 378713979 11777943 3368911..3369492 1 NC_016902.1 PFAM: Rare lipoprotein B; KEGG: sbc:SbBS512_E0610 LPS-assembly lipoprotein RlpB; Rare lipoprotein B 3369492 11777943 EKO11_3225 Escherichia coli KO11FL Rare lipoprotein B YP_005278872.1 3368911 D 595495 CDS YP_005278873.1 378713980 11779655 3369492..3370523 1 NC_016902.1 TIGRFAM: DNA polymerase III, delta subunit; KEGG: eok:G2583_0803 DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta 3370523 11779655 EKO11_3226 Escherichia coli KO11FL DNA polymerase III subunit delta YP_005278873.1 3369492 D 595495 CDS YP_005278874.1 378713981 11777944 3370525..3371166 1 NC_016902.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: ssn:SSON_0593 nicotinic acid mononucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 3371166 11777944 EKO11_3227 Escherichia coli KO11FL nicotinate (nicotinamide) nucleotide adenylyltransferase YP_005278874.1 3370525 D 595495 CDS YP_005278875.1 378713982 11777945 3371190..3371801 1 NC_016902.1 KEGG: eoh:ECO103_0645 putative alpha-ribazole-5'-P phosphatase; TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; alpha-ribazole phosphatase 3371801 11777945 EKO11_3228 Escherichia coli KO11FL alpha-ribazole phosphatase YP_005278875.1 3371190 D 595495 CDS YP_005278876.1 378713983 11777946 3372061..3372378 1 NC_016902.1 KEGG: sbc:SbBS512_E0614 hypothetical protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap family protein 3372378 11777946 EKO11_3229 Escherichia coli KO11FL iojap family protein YP_005278876.1 3372061 D 595495 CDS YP_005278877.1 378713984 11777947 3372382..3372849 1 NC_016902.1 PFAM: protein of unknown function DUF163; KEGG: sdy:SDY_0558 rRNA large subunit methyltransferase; hypothetical protein 3372849 11777947 EKO11_3230 Escherichia coli KO11FL hypothetical protein YP_005278877.1 3372382 D 595495 CDS YP_005278878.1 378713985 11777948 3372880..3374781 1 NC_016902.1 TIGRFAM: penicillin-binding protein 2; KEGG: ebd:ECBD_3016 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3374781 11777948 EKO11_3231 Escherichia coli KO11FL penicillin-binding protein 2 YP_005278878.1 3372880 D 595495 CDS YP_005278879.1 378713986 11777949 3374784..3375896 1 NC_016902.1 KEGG: sbc:SbBS512_E0617 cell wall shape-determining protein; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; rod shape-determining protein RodA 3375896 11777949 EKO11_3232 Escherichia coli KO11FL rod shape-determining protein RodA YP_005278879.1 3374784 D 595495 CDS YP_005278880.1 378713987 11779656 3375907..3376995 1 NC_016902.1 KEGG: eoi:ECO111_0663 rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein; rare lipoprotein A 3376995 11779656 EKO11_3233 Escherichia coli KO11FL rare lipoprotein A YP_005278880.1 3375907 D 595495 CDS YP_005278881.1 378713988 11777950 3377135..3378346 1 NC_016902.1 KEGG: sdy:SDY_0554 D-alanyl-D-alanine carboxypeptidase fraction A; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Beta-lactamase 3378346 11777950 EKO11_3234 Escherichia coli KO11FL Beta-lactamase YP_005278881.1 3377135 D 595495 CDS YP_005278882.1 378713989 11777951 3378457..3378720 1 NC_016902.1 PFAM: protein of unknown function DUF493; KEGG: sdy:SDY_0553 hypothetical protein; hypothetical protein 3378720 11777951 EKO11_3235 Escherichia coli KO11FL hypothetical protein YP_005278882.1 3378457 D 595495 CDS YP_005278883.1 378713990 11777952 3378821..3379462 1 NC_016902.1 TIGRFAM: lipoate-protein ligase B; KEGG: sdy:SDY_0552 lipoyltransferase; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B 3379462 11777952 EKO11_3236 Escherichia coli KO11FL lipoate-protein ligase B YP_005278883.1 3378821 D 595495 CDS YP_005278884.1 378713991 11777953 3379721..3380674 1 NC_016902.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eoi:ECO111_0659 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 3380674 11777953 EKO11_3237 Escherichia coli KO11FL LysR family transcriptional regulator YP_005278884.1 3379721 D 595495 CDS YP_005278885.1 378713992 11777954 3380883..3381848 1 NC_016902.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lipoic acid synthetase; KEGG: sdy:SDY_0550 lipoyl synthase; PFAM: Radical SAM domain protein; lipoic acid synthetase 3381848 11777954 EKO11_3238 Escherichia coli KO11FL lipoic acid synthetase YP_005278885.1 3380883 D 595495 CDS YP_005278886.1 378713993 11777955 complement(3381949..3382152) 1 NC_016902.1 KEGG: sdy:SDY_0549 twin arginine translocase protein E; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, TatA/E family subunit 3382152 11777955 EKO11_3239 Escherichia coli KO11FL twin-arginine translocation protein, TatA/E family subunit YP_005278886.1 3381949 R 595495 CDS YP_005278887.1 378713994 11777956 complement(3382281..3383069) 1 NC_016902.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ebd:ECBD_3025 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3383069 11777956 EKO11_3240 Escherichia coli KO11FL nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_005278887.1 3382281 R 595495 CDS YP_005278888.1 378713995 11777957 3383162..3383545 1 NC_016902.1 KEGG: sdy:SDY_0547 hypothetical protein; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; CrcB protein 3383545 11777957 EKO11_3241 Escherichia coli KO11FL CrcB protein YP_005278888.1 3383162 D 595495 CDS YP_005278889.1 378713996 11777958 complement(3383599..3383808) 1 NC_016902.1 KEGG: cko:CKO_02534 cold shock protein CspE; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock protein 3383808 11777958 EKO11_3242 Escherichia coli KO11FL cold-shock protein YP_005278889.1 3383599 R 595495 CDS YP_005278890.1 378713997 11777959 complement(3383983..3384543) 1 NC_016902.1 PFAM: Antimicrobial peptide resistance and lipid A acylation PagP; KEGG: ebd:ECBD_3028 palmitoyl transferase; antimicrobial peptide resistance and lipid A acylation PagP 3384543 11777959 EKO11_3243 Escherichia coli KO11FL antimicrobial peptide resistance and lipid A acylation PagP YP_005278890.1 3383983 R 595495 CDS YP_005278891.1 378713998 11777960 3385131..3386516 1 NC_016902.1 KEGG: sbo:SBO_0486 C4-dicarboxylate transporter DcuC; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like; anaerobic c4-dicarboxylate antiporter 3386516 11777960 EKO11_3244 Escherichia coli KO11FL anaerobic c4-dicarboxylate antiporter YP_005278891.1 3385131 D 595495 CDS YP_005278892.1 378713999 11777961 complement(3386557..3387237) 1 NC_016902.1 KEGG: sbc:SbBS512_E0535 two-component response regulator DpiA; PFAM: response regulator receiver; SMART: response regulator receiver; fused response regulator receiver/hypothetical protein 3387237 11777961 EKO11_3245 Escherichia coli KO11FL fused response regulator receiver/hypothetical protein YP_005278892.1 3386557 R 595495 CDS YP_005278893.1 378714000 11777962 complement(3387206..3388864) 1 NC_016902.1 KEGG: eok:G2583_0783 sensor histidine kinase DpiB; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; signal transduction histidine kinase regulating citrate/malate metabolism 3388864 11777962 EKO11_3246 Escherichia coli KO11FL signal transduction histidine kinase regulating citrate/malate metabolism YP_005278893.1 3387206 R 595495 CDS YP_005278894.1 378714001 11777963 3389244..3390302 1 NC_016902.1 SMART: Citrate lyase ligase domain protein; TIGRFAM: citrate lyase ligase; cytidyltransferase-related domain protein; KEGG: eoi:ECO111_0649 citrate lyase synthetase; PFAM: Citrate lyase ligase domain protein; GCN5-related N-acetyltransferase; citrate lyase ligase 3390302 11777963 EKO11_3247 Escherichia coli KO11FL citrate lyase ligase YP_005278894.1 3389244 D 595495 CDS YP_005278895.1 378714002 11777964 3390317..3390613 1 NC_016902.1 TIGRFAM: citrate lyase acyl carrier protein; KEGG: ssn:SSON_0569 citrate lyase subunit gamma; citrate lyase acyl carrier protein 3390613 11777964 EKO11_3248 Escherichia coli KO11FL citrate lyase acyl carrier protein YP_005278895.1 3390317 D 595495 CDS YP_005278896.1 378714003 11777965 3390610..3391518 1 NC_016902.1 TIGRFAM: citrate lyase, beta subunit; KEGG: sbc:SbBS512_E0530 citrate (pro-3S)-lyase, beta subunit; PFAM: HpcH/HpaI aldolase; citrate lyase subunit beta 3391518 11777965 EKO11_3249 Escherichia coli KO11FL citrate lyase subunit beta YP_005278896.1 3390610 D 595495 CDS YP_005278897.1 378714004 11777966 3391529..3393061 1 NC_016902.1 TIGRFAM: citrate lyase, alpha subunit; KEGG: ebd:ECBD_3037 citrate lyase, alpha subunit; PFAM: Citrate lyase alpha subunit; citrate lyase subunit alpha 3393061 11777966 EKO11_3250 Escherichia coli KO11FL citrate lyase subunit alpha YP_005278897.1 3391529 D 595495 CDS YP_005278898.1 378714005 11777967 3393065..3393616 1 NC_016902.1 TIGRFAM: holo-ACP synthase CitX; KEGG: sbc:SbBS512_E0528 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase; PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; holo-ACP synthase CitX 3393616 11777967 EKO11_3251 Escherichia coli KO11FL holo-ACP synthase CitX YP_005278898.1 3393065 D 595495 CDS YP_005278899.1 378714006 11779657 3393591..3394469 1 NC_016902.1 TIGRFAM: triphosphoribosyl-dephospho-CoA synthase CitG; KEGG: ebd:ECBD_3039 triphosphoribosyl-dephospho-CoA synthase; PFAM: triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA synthase CitG 3394469 11779657 EKO11_3252 Escherichia coli KO11FL triphosphoribosyl-dephospho-CoA synthase CitG YP_005278899.1 3393591 D 595495 CDS YP_005278900.1 378714007 11777968 3394520..3395983 1 NC_016902.1 KEGG: ebd:ECBD_3040 anion transporter; TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; anion transporter 3395983 11777968 EKO11_3253 Escherichia coli KO11FL anion transporter YP_005278900.1 3394520 D 595495 CDS YP_005278901.1 378714008 11777969 3396097..3396903 1 NC_016902.1 KEGG: eok:G2583_0775 ribonuclease I; PFAM: ribonuclease T2; ribonuclease 3396903 11777969 EKO11_3254 Escherichia coli KO11FL ribonuclease YP_005278901.1 3396097 D 595495 CDS YP_005278902.1 378714009 11777970 3397133..3397543 1 NC_016902.1 KEGG: sbc:SbBS512_E0524 nucleoside diphosphate kinase regulator; GreA/GreB family elongation factor 3397543 11777970 EKO11_3255 Escherichia coli KO11FL GreA/GreB family elongation factor YP_005278902.1 3397133 D 595495 CDS YP_005278903.1 378714010 11777971 complement(3397774..3399012) 1 NC_016902.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: eok:G2583_0772 oxidoreductase, zinc-binding dehydrogenase family; alcohol dehydrogenase GroES domain-containing protein 3399012 11777971 EKO11_3256 Escherichia coli KO11FL alcohol dehydrogenase GroES domain-containing protein YP_005278903.1 3397774 R 595495 CDS YP_005278904.1 378714011 11777972 3399233..3399661 1 NC_016902.1 PFAM: UspA domain-containing protein; KEGG: sdy:SDY_0542 hypothetical protein; UspA domain-containing protein 3399661 11777972 EKO11_3257 Escherichia coli KO11FL UspA domain-containing protein YP_005278904.1 3399233 D 595495 CDS YP_005278905.1 378714012 11777973 complement(3399782..3401377) 1 NC_016902.1 KEGG: sbc:SbBS512_E0520 alkyl hydroperoxide reductase subunit F; TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alkyl hydroperoxide reductase 3401377 11777973 EKO11_3258 Escherichia coli KO11FL alkyl hydroperoxide reductase YP_005278905.1 3399782 R 595495 CDS YP_005278906.1 378714013 11777974 complement(3401518..3402081) 1 NC_016902.1 KEGG: sbc:SbBS512_E0519 alkyl hydroperoxide reductase subunit C; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; peroxiredoxin 3402081 11777974 EKO11_3259 Escherichia coli KO11FL peroxiredoxin YP_005278906.1 3401518 R 595495 CDS YP_005278907.1 378714014 11777975 3402453..3403199 1 NC_016902.1 manually curated; KEGG: ebw:BWG_0478 disulfide isomerase/thiol-disulfide oxidase; disulfide isomerase/thiol-disulfide oxidase 3403199 11777975 EKO11_3260 Escherichia coli KO11FL disulfide isomerase/thiol-disulfide oxidase YP_005278907.1 3402453 D 595495 CDS YP_005278908.1 378714015 11777976 3403408..3404310 1 NC_016902.1 PFAM: regulatory protein LysR; KEGG: ebw:BWG_0477 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 3404310 11777976 EKO11_3261 Escherichia coli KO11FL LysR family transcriptional regulator YP_005278908.1 3403408 D 595495 CDS YP_005278909.1 378714016 11777977 3404457..3405677 1 NC_016902.1 PFAM: PP-loop domain protein; KEGG: eok:G2583_0766 phosphoadenosine phosphosulfate reductase family protein; PP-loop domain-containing protein 3405677 11777977 EKO11_3262 Escherichia coli KO11FL PP-loop domain-containing protein YP_005278909.1 3404457 D 595495 CDS YP_005278910.1 378714017 11777978 3405650..3406279 1 NC_016902.1 KEGG: ssn:SSON_0553 hypothetical protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; ParB domain-containing protein nuclease 3406279 11777978 EKO11_3263 Escherichia coli KO11FL ParB domain-containing protein nuclease YP_005278910.1 3405650 D 595495 CDS YP_005278911.1 378714018 11777979 complement(3406280..3407440) 1 NC_016902.1 PFAM: aminotransferase class I and II; KEGG: sfv:SFV_0549 putative aminotransferase; class I and II aminotransferase 3407440 11777979 EKO11_3264 Escherichia coli KO11FL class I and II aminotransferase YP_005278911.1 3406280 R 595495 CDS YP_005278912.1 378714019 11777980 3407549..3408637 1 NC_016902.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: eoh:ECO103_0608 hypothetical protein; iron-containing alcohol dehydrogenase 3408637 11777980 EKO11_3265 Escherichia coli KO11FL iron-containing alcohol dehydrogenase YP_005278912.1 3407549 D 595495 CDS YP_005278913.1 378714020 11777981 complement(3408647..3408844) 1 NC_016902.1 PFAM: protein of unknown function DUF466; KEGG: sdy:SDY_0530 hypothetical protein; hypothetical protein 3408844 11777981 EKO11_3266 Escherichia coli KO11FL hypothetical protein YP_005278913.1 3408647 R 595495 CDS YP_005278914.1 378714021 11777982 complement(3409026..3411131) 1 NC_016902.1 PFAM: carbon starvation protein CstA; KEGG: efe:EFER_2496 carbon starvation protein; carbon starvation protein CstA 3411131 11777982 EKO11_3267 Escherichia coli KO11FL carbon starvation protein CstA YP_005278914.1 3409026 R 595495 CDS YP_005278915.1 378714022 11777983 complement(3411312..3411725) 1 NC_016902.1 PFAM: thioesterase superfamily protein; KEGG: sdy:SDY_0528 hypothetical protein; thioesterase superfamily protein 3411725 11777983 EKO11_3268 Escherichia coli KO11FL thioesterase superfamily protein YP_005278915.1 3411312 R 595495 CDS YP_005278916.1 378714023 11779658 complement(3411728..3412474) 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ebw:BWG_0469 2,3-dihydroxybenzoate-2,3-dehydrogenase; short-chain dehydrogenase/reductase SDR 3412474 11779658 EKO11_3269 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005278916.1 3411728 R 595495 CDS YP_005278917.1 378714024 11777984 complement(3412474..3413331) 1 NC_016902.1 KEGG: sfl:SF0509 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase; PFAM: isochorismatase hydrolase; phosphopantetheine-binding; isochorismatase 3413331 11777984 EKO11_3270 Escherichia coli KO11FL isochorismatase YP_005278917.1 3412474 R 595495 CDS YP_005278918.1 378714025 11777985 complement(3413345..3414955) 1 NC_016902.1 KEGG: eoi:ECO111_0624 enterobactin synthase subunit E; TIGRFAM: 2,3-dihydroxybenzoate-AMP ligase; PFAM: AMP-dependent synthetase and ligase; 2,3-dihydroxybenzoate-AMP ligase 3414955 11777985 EKO11_3271 Escherichia coli KO11FL 2,3-dihydroxybenzoate-AMP ligase YP_005278918.1 3413345 R 595495 CDS YP_005278919.1 378714026 11779659 complement(3414965..3416140) 1 NC_016902.1 KEGG: eoh:ECO103_0601 isochorismate synthase 1; TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; isochorismate synthase 3416140 11779659 EKO11_3272 Escherichia coli KO11FL isochorismate synthase YP_005278919.1 3414965 R 595495 CDS YP_005278920.1 378714027 11777986 3416515..3417471 1 NC_016902.1 PFAM: periplasmic binding protein; KEGG: ebd:ECBD_3063 iron-enterobactin transporter periplasmic binding protein; periplasmic binding protein 3417471 11777986 EKO11_3273 Escherichia coli KO11FL periplasmic binding protein YP_005278920.1 3416515 D 595495 CDS YP_005278921.1 378714028 11777987 complement(3417475..3418725) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_0542 enterobactin exporter EntS; major facilitator superfamily protein 3418725 11777987 EKO11_3274 Escherichia coli KO11FL major facilitator superfamily protein YP_005278921.1 3417475 R 595495 CDS YP_005278922.1 378714029 11777988 3418836..3419840 1 NC_016902.1 PFAM: transport system permease protein; KEGG: ebd:ECBD_3065 iron-enterobactin transporter membrane protein; transport system permease 3419840 11777988 EKO11_3275 Escherichia coli KO11FL transport system permease YP_005278922.1 3418836 D 595495 CDS YP_005278923.1 378714030 11779660 3419837..3420829 1 NC_016902.1 PFAM: transport system permease protein; KEGG: sfv:SFV_0537 iron-enterobactin transporter permease; transport system permease 3420829 11779660 EKO11_3276 Escherichia coli KO11FL transport system permease YP_005278923.1 3419837 D 595495 CDS YP_005278924.1 378714031 11779661 3420826..3421641 1 NC_016902.1 KEGG: sdy:SDY_0519 iron-enterobactin transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3421641 11779661 EKO11_3277 Escherichia coli KO11FL ABC transporter YP_005278924.1 3420826 D 595495 CDS YP_005278925.1 378714032 11777989 complement(3421638..3422771) 1 NC_016902.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: ssn:SSON_0538 ferric enterobactin transport protein FepE; lipopolysaccharide biosynthesis protein 3422771 11777989 EKO11_3278 Escherichia coli KO11FL lipopolysaccharide biosynthesis protein YP_005278925.1 3421638 R 595495 CDS YP_005278926.1 378714033 11777990 complement(3422987..3426868) 1 NC_016902.1 KEGG: eoi:ECO111_0616 enterobactin synthase subunit F; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase; amino acid adenylation protein 3426868 11777990 EKO11_3279 Escherichia coli KO11FL amino acid adenylation protein YP_005278926.1 3422987 R 595495 CDS YP_005278927.1 378714034 11777991 complement(3426865..3427083) 1 NC_016902.1 PFAM: MbtH domain protein; KEGG: eoh:ECO103_0593 hypothetical protein; MbtH domain-containing protein 3427083 11777991 EKO11_3280 Escherichia coli KO11FL MbtH domain-containing protein YP_005278927.1 3426865 R 595495 CDS YP_005278928.1 378714035 11777992 complement(3427086..3428210) 1 NC_016902.1 KEGG: eoi:ECO111_0614 enterobactin/ferric enterobactin esterase; manually curated; PFAM: esterase; esterase 3428210 11777992 EKO11_3281 Escherichia coli KO11FL esterase YP_005278928.1 3427086 R 595495 CDS YP_005278929.1 378714036 11777993 3428531..3430771 1 NC_016902.1 KEGG: eoi:ECO111_0613 outer membrane receptor FepA; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; TonB-dependent siderophore receptor 3430771 11777993 EKO11_3282 Escherichia coli KO11FL TonB-dependent siderophore receptor YP_005278929.1 3428531 D 595495 CDS YP_005278930.1 378714037 11777994 3430937..3431566 1 NC_016902.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sbo:SBO_0443 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; 4'-phosphopantetheinyl transferase 3431566 11777994 EKO11_3283 Escherichia coli KO11FL 4'-phosphopantetheinyl transferase YP_005278930.1 3430937 D 595495 CDS YP_005278931.1 378714038 11779662 3432785..3433903 1 NC_016902.1 PFAM: glutamate--cysteine ligase GCS2; KEGG: eoh:ECO103_0586 carboxylate-amine ligase; glutamate--cysteine ligase 3433903 11779662 EKO11_3286 Escherichia coli KO11FL glutamate--cysteine ligase YP_005278931.1 3432785 D 595495 CDS YP_005278932.1 378714039 11777997 3433969..3434217 1 NC_016902.1 PFAM: protein of unknown function DUF1158; KEGG: sbc:SbBS512_E0474 putative lipoprotein; hypothetical protein 3434217 11777997 EKO11_3287 Escherichia coli KO11FL hypothetical protein YP_005278932.1 3433969 D 595495 CDS YP_005278933.1 378714040 11777998 3434282..3434650 1 NC_016902.1 KEGG: sdy:SDY_0492 hypothetical protein; hypothetical protein 3434650 11777998 EKO11_3288 Escherichia coli KO11FL hypothetical protein YP_005278933.1 3434282 D 595495 CDS YP_005278934.1 378714041 11777999 3434744..3435397 1 NC_016902.1 KEGG: sbo:SBO_0439 dihydropteridine reductase; PFAM: nitroreductase; 6,7-dihydropteridine reductase 3435397 11777999 EKO11_3289 Escherichia coli KO11FL 6,7-dihydropteridine reductase YP_005278934.1 3434744 D 595495 CDS YP_005278935.1 378714042 11778000 3435505..3436752 1 NC_016902.1 PFAM: MscS Mechanosensitive ion channel; KEGG: eoh:ECO103_0582 putative mechanosensitive channel; mechanosensitive ion channel MscS 3436752 11778000 EKO11_3290 Escherichia coli KO11FL mechanosensitive ion channel MscS YP_005278935.1 3435505 D 595495 CDS YP_005278936.1 378714043 11779663 complement(3436820..3438196) 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: sfv:SFV_0516 phenylalanine transporter; amino acid permease 3438196 11779663 EKO11_3291 Escherichia coli KO11FL amino acid permease YP_005278936.1 3436820 R 595495 CDS YP_005278937.1 378714044 11778001 complement(3438298..3441441) 1 NC_016902.1 KEGG: eoh:ECO103_0580 copper/silver efflux system protein CusA; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux pump 3441441 11778001 EKO11_3292 Escherichia coli KO11FL CzcA family heavy metal efflux pump YP_005278937.1 3438298 R 595495 CDS YP_005278938.1 378714045 11778002 complement(3441453..3442676) 1 NC_016902.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: eoi:ECO111_0601 copper/silver efflux system membrane fusion protein CusB; RND family efflux transporter MFP subunit 3442676 11778002 EKO11_3293 Escherichia coli KO11FL RND family efflux transporter MFP subunit YP_005278938.1 3441453 R 595495 CDS YP_005278939.1 378714046 11778003 complement(3442692..3443024) 1 NC_016902.1 KEGG: ebd:ECBD_3089 periplasmic copper-binding protein; copper-binding protein 3443024 11778003 EKO11_3294 Escherichia coli KO11FL copper-binding protein YP_005278939.1 3442692 R 595495 CDS YP_005278940.1 378714047 11778004 complement(3443048..3444430) 1 NC_016902.1 KEGG: eoh:ECO103_0577 copper/silver efflux system outer membrane protein CusC; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 3444430 11778004 EKO11_3295 Escherichia coli KO11FL NodT family RND efflux system outer membrane lipoprotein YP_005278940.1 3443048 R 595495 CDS YP_005278941.1 378714048 11778005 3444587..3445270 1 NC_016902.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: ebd:ECBD_3091 DNA-binding transcriptional activator CusR; SMART: response regulator receiver; two component heavy metal response transcriptional regulator, winged helix family 3445270 11778005 EKO11_3296 Escherichia coli KO11FL two component heavy metal response transcriptional regulator, winged helix family YP_005278941.1 3444587 D 595495 CDS YP_005278942.1 378714049 11778006 3445260..3446708 1 NC_016902.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ebd:ECBD_3092 sensor kinase CusS; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; heavy metal sensor signal transduction histidine kinase 3446708 11778006 EKO11_3297 Escherichia coli KO11FL heavy metal sensor signal transduction histidine kinase YP_005278942.1 3445260 D 595495 CDS YP_005278943.1 378714050 11778007 3447445..3449346 1 NC_016902.1 TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; KEGG: eoj:ECO26_0641 putative Vgr protein; ImpA family type VI secretion-associated protein 3449346 11778007 EKO11_3298 Escherichia coli KO11FL ImpA family type VI secretion-associated protein YP_005278943.1 3447445 D 595495 CDS YP_005278944.1 378714051 11778008 3449374..3449835 1 NC_016902.1 KEGG: ssn:SSON_0519 hypothetical protein; hypothetical protein 3449835 11778008 EKO11_3299 Escherichia coli KO11FL hypothetical protein YP_005278944.1 3449374 D 595495 CDS YP_005278945.1 378714052 11778009 3449855..3454675 1 NC_016902.1 KEGG: eok:G2583_0728 rhs core protein with extension; TIGRFAM: YD repeat protein; PFAM: PAAR repeat-containing protein; YD repeat-containing protein; YD repeat protein 3454675 11778009 EKO11_3300 Escherichia coli KO11FL YD repeat protein YP_005278945.1 3449855 D 595495 CDS YP_005278946.1 378714053 11778010 3454663..3455202 1 NC_016902.1 KEGG: bxe:Bxe_B1289 hypothetical protein; hypothetical protein 3455202 11778010 EKO11_3301 Escherichia coli KO11FL hypothetical protein YP_005278946.1 3454663 D 595495 CDS YP_005278947.1 378714054 11778011 3455329..3457473 1 NC_016902.1 KEGG: ssn:SSON_0517 rhs core protein with extension; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; YD repeat protein 3457473 11778011 EKO11_3302 Escherichia coli KO11FL YD repeat protein YP_005278947.1 3455329 D 595495 CDS YP_005278948.1 378714055 11778012 3457473..3457886 1 NC_016902.1 KEGG: plm:Plim_0975 hypothetical protein; hypothetical protein 3457886 11778012 EKO11_3303 Escherichia coli KO11FL hypothetical protein YP_005278948.1 3457473 D 595495 CDS YP_005278949.1 378714056 11778013 3458133..3459932 1 NC_016902.1 PFAM: YD repeat-containing protein; KEGG: ssn:SSON_0517 rhs core protein with extension; YD repeat-containing protein 3459932 11778013 EKO11_3304 Escherichia coli KO11FL YD repeat-containing protein YP_005278949.1 3458133 D 595495 CDS YP_005278950.1 378714057 11778014 3459959..3460180 1 NC_016902.1 KEGG: eok:G2583_0725 hypothetical protein; hypothetical protein 3460180 11778014 EKO11_3305 Escherichia coli KO11FL hypothetical protein YP_005278950.1 3459959 D 595495 CDS YP_005278951.1 378714058 11778015 3460710..3461846 1 NC_016902.1 PFAM: transposase IS4 family protein; KEGG: eoi:ECO111_0591 putative H repeat-associated protein; transposase IS4 family protein 3461846 11778015 EKO11_3307 Escherichia coli KO11FL transposase IS4 family protein YP_005278951.1 3460710 D 595495 CDS YP_005278952.1 378714059 11778016 3462115..3464352 1 NC_016902.1 PFAM: General secretory system II protein E domain protein; KEGG: eoj:ECO26_0635 bacteriophage N4 adsorption protein B; General secretory system II protein E domain-containing protein 3464352 11778016 EKO11_3308 Escherichia coli KO11FL General secretory system II protein E domain-containing protein YP_005278952.1 3462115 D 595495 CDS YP_005278953.1 378714060 11778017 3464339..3467311 1 NC_016902.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: eoh:ECO103_0569 bacteriophage N4 receptor, outer membrane subunit; hypothetical protein 3467311 11778017 EKO11_3309 Escherichia coli KO11FL hypothetical protein YP_005278953.1 3464339 D 595495 CDS YP_005278954.1 378714061 11778018 3467312..3468202 1 NC_016902.1 KEGG: eoi:ECO111_0588 hypothetical protein; hypothetical protein 3468202 11778018 EKO11_3310 Escherichia coli KO11FL hypothetical protein YP_005278954.1 3467312 D 595495 CDS YP_005278955.1 378714062 11779665 3468385..3469146 1 NC_016902.1 KEGG: eoh:ECO103_0567 DNA-binding transcriptional activator EnvY of porin biosynthesis; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 3469146 11779665 EKO11_3311 Escherichia coli KO11FL AraC family transcriptional regulator YP_005278955.1 3468385 D 595495 CDS YP_005278956.1 378714063 11778020 3469448..3470143 1 NC_016902.1 manually curated; PFAM: response regulator receiver; regulatory protein LuxR; KEGG: eok:G2583_0655 fimbrial Z protein; SMART: response regulator receiver; regulatory protein LuxR; two component transcriptional regulator, LuxR family 3470143 11778020 EKO11_3312 Escherichia coli KO11FL two component transcriptional regulator, LuxR family YP_005278956.1 3469448 D 595495 CDS YP_005278957.1 378714064 11778021 complement(3470146..3470661) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eoh:ECO103_0506 putative fimbrial protein; fimbrial protein domain-containing protein 3470661 11778021 EKO11_3313 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005278957.1 3470146 R 595495 CDS YP_005278958.1 378714065 11778022 complement(3470672..3471679) 1 NC_016902.1 KEGG: eok:G2583_0653 involved in fimbrial asembly precursor; involved in fimbrial asembly precursor 3471679 11778022 EKO11_3314 Escherichia coli KO11FL involved in fimbrial asembly precursor YP_005278958.1 3470672 R 595495 CDS YP_005278959.1 378714066 11778024 complement(3474331..3475023) 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: eoh:ECO103_0503 pilin chaperone SfmC, periplasmic; Pili assembly chaperone, N-terminal protein 3475023 11778024 EKO11_3316 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005278959.1 3474331 R 595495 CDS YP_005278960.1 378714067 11778025 complement(3475243..3475785) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ebd:ECBD_3128 fimbrial protein; fimbrial protein domain-containing protein 3475785 11778025 EKO11_3317 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005278960.1 3475243 R 595495 CDS YP_005278961.1 378714068 11778026 3476266..3477132 1 NC_016902.1 KEGG: eoi:ECO111_0561 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methylenetetrahydrofolate dehydrogenase 3477132 11778026 EKO11_3318 Escherichia coli KO11FL methylenetetrahydrofolate dehydrogenase YP_005278961.1 3476266 D 595495 CDS YP_005278962.1 378714069 11778027 3477134..3477346 1 NC_016902.1 KEGG: sdy:SDY_0280 hypothetical protein; hypothetical protein 3477346 11778027 EKO11_3319 Escherichia coli KO11FL hypothetical protein YP_005278962.1 3477134 D 595495 CDS YP_005278963.1 378714070 11778028 3477454..3477975 1 NC_016902.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: sbc:SbBS512_E0447 hypothetical protein; membrane-bound metal-dependent hydrolase 3477975 11778028 EKO11_3320 Escherichia coli KO11FL membrane-bound metal-dependent hydrolase YP_005278963.1 3477454 D 595495 CDS YP_005278964.1 378714071 11778029 complement(3478011..3479396) 1 NC_016902.1 TIGRFAM: cysteinyl-tRNA synthetase; KEGG: sfv:SFV_0484 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; cysteinyl-tRNA synthetase 3479396 11778029 EKO11_3321 Escherichia coli KO11FL cysteinyl-tRNA synthetase YP_005278964.1 3478011 R 595495 CDS YP_005278965.1 378714072 11778030 3479570..3480064 1 NC_016902.1 KEGG: ebd:ECBD_3133 peptidyl-prolyl cis-trans isomerase B (rotamase B); PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; peptidylprolyl isomerase 3480064 11778030 EKO11_3322 Escherichia coli KO11FL peptidylprolyl isomerase YP_005278965.1 3479570 D 595495 CDS YP_005278966.1 378714073 11778031 3480067..3480789 1 NC_016902.1 KEGG: sbc:SbBS512_E0450 UDP-2,3-diacylglucosamine hydrolase; TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; UDP-2,3-diacylglucosamine hydrolase 3480789 11778031 EKO11_3323 Escherichia coli KO11FL UDP-2,3-diacylglucosamine hydrolase YP_005278966.1 3480067 D 595495 CDS YP_005278967.1 378714074 11778032 3480907..3481416 1 NC_016902.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: sbo:SBO_0420 phosphoribosylaminoimidazole carboxylase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 3481416 11778032 EKO11_3324 Escherichia coli KO11FL phosphoribosylaminoimidazole carboxylase catalytic subunit YP_005278967.1 3480907 D 595495 CDS YP_005278968.1 378714075 11778033 3481413..3482480 1 NC_016902.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: ebd:ECBD_3136 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase ATPase subunit 3482480 11778033 EKO11_3325 Escherichia coli KO11FL phosphoribosylaminoimidazole carboxylase ATPase subunit YP_005278968.1 3481413 D 595495 CDS YP_005278969.1 378714076 11778034 complement(3482617..3483510) 1 NC_016902.1 TIGRFAM: carbamate kinase; KEGG: ssn:SSON_0497 carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; carbamate kinase 3483510 11778034 EKO11_3326 Escherichia coli KO11FL carbamate kinase YP_005278969.1 3482617 R 595495 CDS YP_005278970.1 378714077 11779666 complement(3483507..3484322) 1 NC_016902.1 PFAM: Protein of unknown function DUF2877; KEGG: eok:G2583_0640 putative carboxylase; hypothetical protein 3484322 11779666 EKO11_3327 Escherichia coli KO11FL hypothetical protein YP_005278970.1 3483507 R 595495 CDS YP_005278971.1 378714078 11778035 complement(3484333..3485592) 1 NC_016902.1 PFAM: protein of unknown function DUF1116; KEGG: ebd:ECBD_3139 protein of unknown function DUF1116; hypothetical protein 3485592 11778035 EKO11_3328 Escherichia coli KO11FL hypothetical protein YP_005278971.1 3484333 R 595495 CDS YP_005278972.1 378714079 11778036 complement(3485602..3487269) 1 NC_016902.1 PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein; KEGG: ebd:ECBD_3140 membrane protein FdrA; ATP-citrate lyase/succinyl-CoA ligase 3487269 11778036 EKO11_3329 Escherichia coli KO11FL ATP-citrate lyase/succinyl-CoA ligase YP_005278972.1 3485602 R 595495 CDS YP_005278973.1 378714080 11778037 3487586..3488635 1 NC_016902.1 KEGG: eoh:ECO103_0489 ureidoglycolate dehydrogenase; TIGRFAM: ureidoglycolate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; ureidoglycolate dehydrogenase 3488635 11778037 EKO11_3330 Escherichia coli KO11FL ureidoglycolate dehydrogenase YP_005278973.1 3487586 D 595495 CDS YP_005278974.1 378714081 11778038 3488657..3489892 1 NC_016902.1 TIGRFAM: allantoate amidohydrolase; amidase, hydantoinase/carbamoylase family; KEGG: ebd:ECBD_3142 allantoate amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; allantoate amidohydrolase 3489892 11778038 EKO11_3331 Escherichia coli KO11FL allantoate amidohydrolase YP_005278974.1 3488657 D 595495 CDS YP_005278975.1 378714082 11779667 3489903..3490688 1 NC_016902.1 KEGG: ebd:ECBD_3143 hypothetical protein; TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; allantoin catabolism protein 3490688 11779667 EKO11_3332 Escherichia coli KO11FL allantoin catabolism protein YP_005278975.1 3489903 D 595495 CDS YP_005278976.1 378714083 11779668 complement(3490817..3491962) 1 NC_016902.1 TIGRFAM: glycerate kinase; KEGG: eoh:ECO103_0486 glycerate kinase II; PFAM: glycerate kinase; glycerate kinase 3491962 11779668 EKO11_3333 Escherichia coli KO11FL glycerate kinase YP_005278976.1 3490817 R 595495 CDS YP_005278977.1 378714084 11778039 complement(3491984..3493285) 1 NC_016902.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: ebd:ECBD_3145 putative purine permease YbbY; xanthine/uracil/vitamin C permease 3493285 11778039 EKO11_3334 Escherichia coli KO11FL xanthine/uracil/vitamin C permease YP_005278977.1 3491984 R 595495 CDS YP_005278978.1 378714085 11778040 complement(3493342..3494703) 1 NC_016902.1 KEGG: eoi:ECO111_0544 allantoinase; TIGRFAM: allantoinase; PFAM: amidohydrolase; allantoinase 3494703 11778040 EKO11_3335 Escherichia coli KO11FL allantoinase YP_005278978.1 3493342 R 595495 CDS YP_005278979.1 378714086 11778041 complement(3494763..3496217) 1 NC_016902.1 KEGG: eoh:ECO103_0483 allantoin permease; TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; NCS1 nucleoside transporter family 3496217 11778041 EKO11_3336 Escherichia coli KO11FL NCS1 nucleoside transporter family YP_005278979.1 3494763 R 595495 CDS YP_005278980.1 378714087 11778042 complement(3496386..3497264) 1 NC_016902.1 KEGG: eoh:ECO103_0482 tartronate semialdehyde reductase, NADH-dependent; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 3497264 11778042 EKO11_3337 Escherichia coli KO11FL 2-hydroxy-3-oxopropionate reductase YP_005278980.1 3496386 R 595495 CDS YP_005278981.1 378714088 11778043 complement(3497364..3498140) 1 NC_016902.1 TIGRFAM: hydroxypyruvate isomerase; KEGG: eok:G2583_0628 glyoxylate-induced protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; hydroxypyruvate isomerase 3498140 11778043 EKO11_3338 Escherichia coli KO11FL hydroxypyruvate isomerase YP_005278981.1 3497364 R 595495 CDS YP_005278982.1 378714089 11778044 complement(3498153..3499934) 1 NC_016902.1 KEGG: ebd:ECBD_3150 glyoxylate carboligase; TIGRFAM: glyoxylate carboligase; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; glyoxylate carboligase 3499934 11778044 EKO11_3339 Escherichia coli KO11FL glyoxylate carboligase YP_005278982.1 3498153 R 595495 CDS YP_005278983.1 378714090 11778045 complement(3500024..3500839) 1 NC_016902.1 KEGG: sbo:SBO_0410 DNA-binding transcriptional repressor AllR; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; IclR family transcriptional regulator 3500839 11778045 EKO11_3340 Escherichia coli KO11FL IclR family transcriptional regulator YP_005278983.1 3500024 R 595495 CDS YP_005278984.1 378714091 11778046 complement(3500917..3501399) 1 NC_016902.1 KEGG: eoh:ECO103_0478 ureidoglycolate hydrolase; PFAM: Ureidoglycolate hydrolase; ureidoglycolate hydrolase 3501399 11778046 EKO11_3341 Escherichia coli KO11FL ureidoglycolate hydrolase YP_005278984.1 3500917 R 595495 CDS YP_005278985.1 378714092 11778047 3501629..3502555 1 NC_016902.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eoh:ECO103_0477 DNA-binding transcriptional activator AllS; LysR family transcriptional regulator 3502555 11778047 EKO11_3342 Escherichia coli KO11FL LysR family transcriptional regulator YP_005278985.1 3501629 D 595495 CDS YP_005278986.1 378714093 11778048 3502624..3503718 1 NC_016902.1 KEGG: eoh:ECO103_0476 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; tRNA 2-selenouridine synthase 3503718 11778048 EKO11_3343 Escherichia coli KO11FL tRNA 2-selenouridine synthase YP_005278986.1 3502624 D 595495 CDS YP_005278987.1 378714094 11778049 3503834..3504205 1 NC_016902.1 KEGG: sdy:SDY_0400 hypothetical protein; hypothetical protein 3504205 11778049 EKO11_3344 Escherichia coli KO11FL hypothetical protein YP_005278987.1 3503834 D 595495 CDS YP_005278988.1 378714095 11778051 complement(3504720..3505211) 1 NC_016902.1 KEGG: eoh:ECO103_0474 hypothetical protein; hypothetical protein 3505211 11778051 EKO11_3346 Escherichia coli KO11FL hypothetical protein YP_005278988.1 3504720 R 595495 CDS YP_005278989.1 378714096 11778052 complement(3505192..3505902) 1 NC_016902.1 PFAM: RHS protein; KEGG: ebd:ECBD_3157 rhs protein; RHS protein 3505902 11778052 EKO11_3347 Escherichia coli KO11FL RHS protein YP_005278989.1 3505192 R 595495 CDS YP_005278990.1 378714097 11778053 complement(3505902..3506270) 1 NC_016902.1 KEGG: ebd:ECBD_3158 hypothetical protein; hypothetical protein 3506270 11778053 EKO11_3348 Escherichia coli KO11FL hypothetical protein YP_005278990.1 3505902 R 595495 CDS YP_005278991.1 378714098 11778054 complement(3506310..3510599) 1 NC_016902.1 KEGG: ebw:BWG_0378 RhsD element protein; TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein 3510599 11778054 EKO11_3349 Escherichia coli KO11FL YD repeat protein YP_005278991.1 3506310 R 595495 CDS YP_005278992.1 378714099 11778055 complement(3511029..3513443) 1 NC_016902.1 PFAM: protein of unknown function DUF214; KEGG: ebw:BWG_0377 putative inner membrane protein; hypothetical protein 3513443 11778055 EKO11_3350 Escherichia coli KO11FL hypothetical protein YP_005278992.1 3511029 R 595495 CDS YP_005278993.1 378714100 11778056 complement(3513440..3514126) 1 NC_016902.1 KEGG: sbc:SbBS512_E0430 putative ABC transporter ATP-binding protein YbbA; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3514126 11778056 EKO11_3351 Escherichia coli KO11FL ABC transporter YP_005278993.1 3513440 R 595495 CDS YP_005278994.1 378714101 11779669 3514094..3514720 1 NC_016902.1 manually curated; KEGG: efe:EFER_0552 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; PFAM: lipolytic protein G-D-S-L family; lysophospholipase 3514720 11779669 EKO11_3352 Escherichia coli KO11FL lysophospholipase YP_005278994.1 3514094 D 595495 CDS YP_005278995.1 378714102 11779670 3514749..3515519 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ssn:SSON_0482 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3515519 11779670 EKO11_3353 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005278995.1 3514749 D 595495 CDS YP_005278996.1 378714103 11778057 3515580..3516434 1 NC_016902.1 PFAM: Thioredoxin domain-containing protein; KEGG: sdy:SDY_0407 putative thioredoxin-like protein; thioredoxin domain-containing protein 3516434 11778057 EKO11_3354 Escherichia coli KO11FL thioredoxin domain-containing protein YP_005278996.1 3515580 D 595495 CDS YP_005278997.1 378714104 11778058 complement(3516497..3517276) 1 NC_016902.1 PFAM: Conserved hypothetical protein CHP00245; KEGG: ssn:SSON_0480 putative metal resistance protein; hypothetical protein 3517276 11778058 EKO11_3355 Escherichia coli KO11FL hypothetical protein YP_005278997.1 3516497 R 595495 CDS YP_005278998.1 378714105 11778059 complement(3517263..3517940) 1 NC_016902.1 KEGG: ebd:ECBD_3166 putative ABC transporter ATP-binding protein YbbL; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3517940 11778059 EKO11_3356 Escherichia coli KO11FL ABC transporter YP_005278998.1 3517263 R 595495 CDS YP_005278999.1 378714106 11778060 3518086..3519003 1 NC_016902.1 KEGG: sbo:SBO_0391 putative protease; PFAM: band 7 protein; SMART: band 7 protein; hypothetical protein 3519003 11778060 EKO11_3357 Escherichia coli KO11FL hypothetical protein YP_005278999.1 3518086 D 595495 CDS YP_005279000.1 378714107 11778061 3519000..3519458 1 NC_016902.1 PFAM: protein of unknown function DUF107; KEGG: ebw:BWG_0369 conserved inner membrane protein; hypothetical protein 3519458 11778061 EKO11_3358 Escherichia coli KO11FL hypothetical protein YP_005279000.1 3519000 D 595495 CDS YP_005279001.1 378714108 11779671 complement(3519459..3519866) 1 NC_016902.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: sbc:SbBS512_E0422 DNA-binding transcriptional regulator CueR; SMART: regulatory protein MerR; MerR family transcriptional regulator 3519866 11779671 EKO11_3359 Escherichia coli KO11FL MerR family transcriptional regulator YP_005279001.1 3519459 R 595495 CDS YP_005279002.1 378714109 11778063 complement(3519991..3521283) 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: ssn:SSON_0475 putative amino acid/amine transport protein; amino acid permease 3521283 11778063 EKO11_3361 Escherichia coli KO11FL amino acid permease YP_005279002.1 3519991 R 595495 CDS YP_005279003.1 378714110 11778064 complement(3521286..3522218) 1 NC_016902.1 TIGRFAM: Glutaminase, core; KEGG: ssn:SSON_0474 glutaminase; PFAM: Glutaminase, core; glutaminase 3522218 11778064 EKO11_3362 Escherichia coli KO11FL glutaminase YP_005279003.1 3521286 R 595495 CDS YP_005279004.1 378714111 11778065 3522480..3524984 1 NC_016902.1 KEGG: eoi:ECO111_0519 copper exporting ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; copper-translocating P-type ATPase 3524984 11778065 EKO11_3363 Escherichia coli KO11FL copper-translocating P-type ATPase YP_005279004.1 3522480 D 595495 CDS YP_005279005.1 378714112 11778066 complement(3525098..3525493) 1 NC_016902.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: ssn:SSON_0472 hypothetical protein; SMART: helix-turn-helix domain protein; plasmid maintenance system antidote protein 3525493 11778066 EKO11_3364 Escherichia coli KO11FL plasmid maintenance system antidote protein YP_005279005.1 3525098 R 595495 CDS YP_005279006.1 378714113 11778067 3525577..3526371 1 NC_016902.1 PFAM: GumN family protein; KEGG: eoi:ECO111_0517 hypothetical protein; GumN family protein 3526371 11778067 EKO11_3365 Escherichia coli KO11FL GumN family protein YP_005279006.1 3525577 D 595495 CDS YP_005279007.1 378714114 11778068 3526575..3527054 1 NC_016902.1 KEGG: sdy:SDY_0437 hypothetical protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; ybaK/ebsC protein 3527054 11778068 EKO11_3366 Escherichia coli KO11FL ybaK/ebsC protein YP_005279007.1 3526575 D 595495 CDS YP_005279008.1 378714115 11778069 complement(3527091..3528743) 1 NC_016902.1 PFAM: 5'-Nucleotidase domain-containing protein; metallophosphoesterase; KEGG: eoh:ECO103_0456 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; 5'-nucleotidase 3528743 11778069 EKO11_3367 Escherichia coli KO11FL 5'-nucleotidase YP_005279008.1 3527091 R 595495 CDS YP_005279009.1 378714116 11778070 3528961..3530181 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoi:ECO111_0514 putative fosmidomycin efflux system protein Fsr; major facilitator superfamily protein 3530181 11778070 EKO11_3368 Escherichia coli KO11FL major facilitator superfamily protein YP_005279009.1 3528961 D 595495 CDS YP_005279010.1 378714117 11778071 3530419..3532095 1 NC_016902.1 KEGG: eoi:ECO111_0513 putative cation:proton antiport protein; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; potassium efflux system protein 3532095 11778071 EKO11_3369 Escherichia coli KO11FL potassium efflux system protein YP_005279010.1 3530419 D 595495 CDS YP_005279011.1 378714118 11778072 complement(3532228..3533532) 1 NC_016902.1 KEGG: sbc:SbBS512_E0409 inosine kinase; PFAM: PfkB domain protein; Inosine kinase 3533532 11778072 EKO11_3370 Escherichia coli KO11FL Inosine kinase YP_005279011.1 3532228 R 595495 CDS YP_005279012.1 378714119 11778073 3533684..3534643 1 NC_016902.1 KEGG: eoh:ECO103_0452 acetyl esterase; acetyl esterase 3534643 11778073 EKO11_3371 Escherichia coli KO11FL acetyl esterase YP_005279012.1 3533684 D 595495 CDS YP_005279013.1 378714120 11779672 complement(3534640..3535602) 1 NC_016902.1 TIGRFAM: ferrochelatase; KEGG: eoh:ECO103_0451 ferrochelatase; PFAM: ferrochelatase; ferrochelatase 3535602 11779672 EKO11_3372 Escherichia coli KO11FL ferrochelatase YP_005279013.1 3534640 R 595495 CDS YP_005279014.1 378714121 11778074 complement(3535838..3536542) 1 NC_016902.1 manually curated; TIGRFAM: adenylate kinase; KEGG: eok:G2583_0586 adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain-containing protein; adenylate kinase 3536542 11778074 EKO11_3373 Escherichia coli KO11FL adenylate kinase YP_005279014.1 3535838 R 595495 CDS YP_005279015.1 378714122 11778075 complement(3536663..3538537) 1 NC_016902.1 KEGG: eoh:ECO103_0449 heat shock protein 90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; Heat shock protein Hsp90-like protein 3538537 11778075 EKO11_3374 Escherichia coli KO11FL Heat shock protein Hsp90-like protein YP_005279015.1 3536663 R 595495 CDS YP_005279016.1 378714123 11779673 complement(3538647..3539252) 1 NC_016902.1 TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain-containing protein; Zinc finger C4-type, RecR; KEGG: sbc:SbBS512_E0404 recombination protein RecR; SMART: Toprim sub domain-containing protein; recombination protein RecR 3539252 11779673 EKO11_3375 Escherichia coli KO11FL recombination protein RecR YP_005279016.1 3538647 R 595495 CDS YP_005279017.1 378714124 11778076 complement(3539252..3539581) 1 NC_016902.1 PFAM: Uncharacterised protein family UPF0133; KEGG: sdy:SDY_0448 hypothetical protein; hypothetical protein 3539581 11778076 EKO11_3376 Escherichia coli KO11FL hypothetical protein YP_005279017.1 3539252 R 595495 CDS YP_005279018.1 378714125 11778077 complement(3539634..3541565) 1 NC_016902.1 TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; KEGG: eoh:ECO103_0446 DNA polymerase III subunits gamma and tau; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 3541565 11778077 EKO11_3377 Escherichia coli KO11FL DNA polymerase III subunits gamma and tau YP_005279018.1 3539634 R 595495 CDS YP_005279019.1 378714126 11778078 complement(3541694..3542245) 1 NC_016902.1 KEGG: sdy:SDY_0450 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 3542245 11778078 EKO11_3378 Escherichia coli KO11FL adenine phosphoribosyltransferase YP_005279019.1 3541694 R 595495 CDS YP_005279020.1 378714127 11778079 complement(3542398..3542775) 1 NC_016902.1 PFAM: protein of unknown function DUF454; KEGG: sdy:SDY_0451 hypothetical protein; hypothetical protein 3542775 11778079 EKO11_3379 Escherichia coli KO11FL hypothetical protein YP_005279020.1 3542398 R 595495 CDS YP_005279021.1 378714128 11778080 3542845..3543372 1 NC_016902.1 PFAM: Primosomal replication priB and priC; KEGG: sbc:SbBS512_E0399 primosomal replication protein N''; primosomal replication priB and priC 3543372 11778080 EKO11_3380 Escherichia coli KO11FL primosomal replication priB and priC YP_005279021.1 3542845 D 595495 CDS YP_005279022.1 378714129 11778081 3543386..3543547 1 NC_016902.1 PFAM: Protein of unknown function DUF2496, YbaM-related; KEGG: sbc:SbBS512_E0398 hypothetical protein; hypothetical protein 3543547 11778081 EKO11_3381 Escherichia coli KO11FL hypothetical protein YP_005279022.1 3543386 D 595495 CDS YP_005279023.1 378714130 11778082 complement(3543759..3547121) 1 NC_016902.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ssn:SSON_0452 potassium efflux protein KefA; mechanosensitive ion channel MscS 3547121 11778082 EKO11_3382 Escherichia coli KO11FL mechanosensitive ion channel MscS YP_005279023.1 3543759 R 595495 CDS YP_005279024.1 378714131 11778083 complement(3547249..3547896) 1 NC_016902.1 PFAM: Tetracycline transcriptional repressor MAATS-type domain-containing protein; regulatory protein TetR; KEGG: sdy:SDY_0455 DNA-binding transcriptional repressor AcrR; TetR family transcriptional regulator 3547896 11778083 EKO11_3383 Escherichia coli KO11FL TetR family transcriptional regulator YP_005279024.1 3547249 R 595495 CDS YP_005279025.1 378714132 11778084 3548038..3549231 1 NC_016902.1 KEGG: ebd:ECBD_3193 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3549231 11778084 EKO11_3384 Escherichia coli KO11FL RND family efflux transporter MFP subunit YP_005279025.1 3548038 D 595495 CDS YP_005279026.1 378714133 11778085 3549254..3552403 1 NC_016902.1 KEGG: sbo:SBO_0362 acridine efflux pump; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3552403 11778085 EKO11_3385 Escherichia coli KO11FL hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_005279026.1 3549254 D 595495 CDS YP_005279027.1 378714134 11778086 3552949..3553323 1 NC_016902.1 PFAM: Biofilm formation regulator YbaJ; KEGG: sdy:SDY_0458 hypothetical protein; Biofilm formation regulator YbaJ 3553323 11778086 EKO11_3386 Escherichia coli KO11FL Biofilm formation regulator YbaJ YP_005279027.1 3552949 D 595495 CDS YP_005279028.1 378714135 11778087 3553349..3553567 1 NC_016902.1 PFAM: Haemolysin expression modulating family protein; KEGG: sdy:SDY_0459 hemolysin expression-modulating protein; hemolysin expression modulating family protein 3553567 11778087 EKO11_3387 Escherichia coli KO11FL hemolysin expression modulating family protein YP_005279028.1 3553349 D 595495 CDS YP_005279029.1 378714136 11778088 3553739..3554290 1 NC_016902.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sdy:SDY_0460 maltose O-acetyltransferase; transferase hexapeptide repeat containing protein 3554290 11778088 EKO11_3388 Escherichia coli KO11FL transferase hexapeptide repeat containing protein YP_005279029.1 3553739 D 595495 CDS YP_005279030.1 378714137 11778089 3554406..3554876 1 NC_016902.1 PFAM: Extracytoplasmic function sigma factor YlaC; KEGG: sdy:SDY_0461 hypothetical protein; Extracytoplasmic function sigma factor YlaC 3554876 11778089 EKO11_3389 Escherichia coli KO11FL Extracytoplasmic function sigma factor YlaC YP_005279030.1 3554406 D 595495 CDS YP_005279031.1 378714138 11778090 3555040..3556590 1 NC_016902.1 KEGG: eoh:ECO103_0433 hypothetical protein; PFAM: EAL domain protein; SMART: EAL domain protein; EAL domain-containing protein 3556590 11778090 EKO11_3390 Escherichia coli KO11FL EAL domain-containing protein YP_005279031.1 3555040 D 595495 CDS YP_005279032.1 378714139 11778091 complement(3556632..3556985) 1 NC_016902.1 PFAM: protein of unknown function DUF1428; KEGG: sdy:SDY_0392 hypothetical protein; hypothetical protein 3556985 11778091 EKO11_3391 Escherichia coli KO11FL hypothetical protein YP_005279032.1 3556632 R 595495 CDS YP_005279033.1 378714140 11779674 3557364..3557675 1 NC_016902.1 KEGG: sdy:SDY_0391 hypothetical protein; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 3557675 11779674 EKO11_3392 Escherichia coli KO11FL methylated-DNA--protein-cysteine methyltransferase YP_005279033.1 3557364 D 595495 CDS YP_005279034.1 378714141 11778093 complement(3557706..3558278) 1 NC_016902.1 KEGG: sbo:SBO_0348 glycoprotein/polysaccharide metabolism; glycoprotein/polysaccharide metabolism 3558278 11778093 EKO11_3393 Escherichia coli KO11FL glycoprotein/polysaccharide metabolism YP_005279034.1 3557706 R 595495 CDS YP_005279035.1 378714142 11778094 3558496..3559356 1 NC_016902.1 KEGG: ssn:SSON_0440 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 3559356 11778094 EKO11_3394 Escherichia coli KO11FL acyl-CoA thioesterase II YP_005279035.1 3558496 D 595495 CDS YP_005279036.1 378714143 11778095 complement(3559404..3560690) 1 NC_016902.1 KEGG: ssn:SSON_0439 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter; ammonium transporter 3560690 11778095 EKO11_3395 Escherichia coli KO11FL ammonium transporter YP_005279036.1 3559404 R 595495 CDS YP_005279037.1 378714144 11778096 complement(3560720..3561196) 1 NC_016902.1 KEGG: sfv:SFV_0424 nitrogen regulatory protein P-II 2; manually curated; PFAM: nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3561196 11778096 EKO11_3396 Escherichia coli KO11FL nitrogen regulatory protein P-II YP_005279037.1 3560720 R 595495 CDS YP_005279038.1 378714145 11778097 complement(3561239..3563020) 1 NC_016902.1 KEGG: sbo:SBO_0344 putative multidrug transporter membrane\ATP-binding components; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; ABC transporter 3563020 11778097 EKO11_3397 Escherichia coli KO11FL ABC transporter YP_005279038.1 3561239 R 595495 CDS YP_005279039.1 378714146 11778098 complement(3563013..3564785) 1 NC_016902.1 KEGG: ebd:ECBD_3207 putative multidrug transporter membrane\ATP-binding components; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; ABC transporter 3564785 11778098 EKO11_3398 Escherichia coli KO11FL ABC transporter YP_005279039.1 3563013 R 595495 CDS YP_005279040.1 378714147 11778099 complement(3564815..3565501) 1 NC_016902.1 manually curated; PFAM: Transcription regulator AsnC-type-like; KEGG: eok:G2583_0559 putative transcriptional regulator YbaO; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator 3565501 11778099 EKO11_3399 Escherichia coli KO11FL AsnC family transcriptional regulator YP_005279040.1 3564815 R 595495 CDS YP_005279041.1 378714148 11779675 complement(3565426..3566256) 1 NC_016902.1 manually curated; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; KEGG: ssn:SSON_0434 hypothetical protein; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; cof family hydrolase 3566256 11779675 EKO11_3400 Escherichia coli KO11FL cof family hydrolase YP_005279041.1 3565426 R 595495 CDS YP_005279042.1 378714149 11778100 3566344..3568044 1 NC_016902.1 PFAM: extracellular solute-binding protein family 5; KEGG: sbc:SbBS512_E0368 extracellular solute-binding protein; family 5 extracellular solute-binding protein 3568044 11778100 EKO11_3401 Escherichia coli KO11FL family 5 extracellular solute-binding protein YP_005279042.1 3566344 D 595495 CDS YP_005279043.1 378714150 11778101 3568109..3568804 1 NC_016902.1 KEGG: sbc:SbBS512_E0367 queuosine biosynthesis protein QueC; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like; exsB protein 3568804 11778101 EKO11_3402 Escherichia coli KO11FL exsB protein YP_005279043.1 3568109 D 595495 CDS YP_005279044.1 378714151 11778102 complement(3568856..3569254) 1 NC_016902.1 PFAM: thioesterase superfamily protein; KEGG: sbc:SbBS512_E0366 thioesterase family protein; thioesterase superfamily protein 3569254 11778102 EKO11_3403 Escherichia coli KO11FL thioesterase superfamily protein YP_005279044.1 3568856 R 595495 CDS YP_005279045.1 378714152 11778103 complement(3569348..3569719) 1 NC_016902.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: sdy:SDY_0290 hypothetical protein; competence protein ComEA 3569719 11778103 EKO11_3404 Escherichia coli KO11FL competence protein ComEA YP_005279045.1 3569348 R 595495 CDS YP_005279046.1 378714153 11778104 complement(3569870..3571741) 1 NC_016902.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sbo:SBO_0335 peptidyl-prolyl cis-trans isomerase (rotamase D); PpiC-type peptidyl-prolyl cis-trans isomerase 3571741 11778104 EKO11_3405 Escherichia coli KO11FL PpiC-type peptidyl-prolyl cis-trans isomerase YP_005279046.1 3569870 R 595495 CDS YP_005279047.1 378714154 11778105 complement(3571933..3572205) 1 NC_016902.1 KEGG: sdy:SDY_0292 transcriptional regulator HU subunit beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 3572205 11778105 EKO11_3406 Escherichia coli KO11FL histone family protein DNA-binding protein YP_005279047.1 3571933 R 595495 CDS YP_005279048.1 378714155 11778106 complement(3572414..3574768) 1 NC_016902.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: ssn:SSON_0422 DNA-binding ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATP-dependent protease La 3574768 11778106 EKO11_3407 Escherichia coli KO11FL ATP-dependent protease La YP_005279048.1 3572414 R 595495 CDS YP_005279049.1 378714156 11778107 complement(3574956..3576230) 1 NC_016902.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: sdy:SDY_0294 ATP-dependent protease ATP-binding subunit ClpX; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 3576230 11778107 EKO11_3408 Escherichia coli KO11FL ATP-dependent Clp protease ATP-binding subunit ClpX YP_005279049.1 3574956 R 595495 CDS YP_005279050.1 378714157 11778108 complement(3576356..3576979) 1 NC_016902.1 TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: sdy:SDY_0295 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 3576979 11778108 EKO11_3409 Escherichia coli KO11FL ATP-dependent Clp protease, proteolytic subunit ClpP YP_005279050.1 3576356 R 595495 CDS YP_005279051.1 378714158 11778109 complement(3577225..3578523) 1 NC_016902.1 KEGG: ssn:SSON_0419 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type; trigger factor 3578523 11778109 EKO11_3410 Escherichia coli KO11FL trigger factor YP_005279051.1 3577225 R 595495 CDS YP_005279052.1 378714159 11779676 complement(3578867..3579181) 1 NC_016902.1 PFAM: BolA family protein; KEGG: sdy:SDY_0298 transcriptional regulator BolA; BolA family protein 3579181 11779676 EKO11_3411 Escherichia coli KO11FL BolA family protein YP_005279052.1 3578867 R 595495 CDS YP_005279053.1 378714160 11778110 3579387..3580067 1 NC_016902.1 KEGG: sfv:SFV_0409 hypothetical protein; manually curated; PFAM: Uncharacterized lipoprotein; lipoprotein 3580067 11778110 EKO11_3412 Escherichia coli KO11FL lipoprotein YP_005279053.1 3579387 D 595495 CDS YP_005279054.1 378714161 11778111 3580111..3581586 1 NC_016902.1 KEGG: sbc:SbBS512_E0355 muropeptide transporter; TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1; AmpG-related permease 3581586 11778111 EKO11_3413 Escherichia coli KO11FL AmpG-related permease YP_005279054.1 3580111 D 595495 CDS YP_005279055.1 378714162 11779677 3582046..3582993 1 NC_016902.1 KEGG: ebd:ECBD_3226 cytochrome o ubiquinol oxidase subunit II; TIGRFAM: ubiquinol oxidase, subunit II; PFAM: COX aromatic rich domain protein; cytochrome c oxidase subunit II; ubiquinol oxidase subunit II 3582993 11779677 EKO11_3414 Escherichia coli KO11FL ubiquinol oxidase subunit II YP_005279055.1 3582046 D 595495 CDS YP_005279056.1 378714163 11779678 3583015..3585006 1 NC_016902.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; KEGG: ssn:SSON_0414 cytochrome o ubiquinol oxidase subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 3585006 11779678 EKO11_3415 Escherichia coli KO11FL cytochrome o ubiquinol oxidase subunit I YP_005279056.1 3583015 D 595495 CDS YP_005279057.1 378714164 11778112 3584996..3585610 1 NC_016902.1 KEGG: ssn:SSON_0413 cytochrome o ubiquinol oxidase subunit III; TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 3585610 11778112 EKO11_3416 Escherichia coli KO11FL cytochrome o ubiquinol oxidase subunit III YP_005279057.1 3584996 D 595495 CDS YP_005279058.1 378714165 11778113 3585610..3585939 1 NC_016902.1 KEGG: sbo:SBO_0323 cytochrome o ubiquinol oxidase subunit IV; TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 3585939 11778113 EKO11_3417 Escherichia coli KO11FL cytochrome o ubiquinol oxidase subunit IV YP_005279058.1 3585610 D 595495 CDS YP_005279059.1 378714166 11779679 3585951..3586841 1 NC_016902.1 KEGG: sbo:SBO_0322 protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 3586841 11779679 EKO11_3418 Escherichia coli KO11FL protoheme IX farnesyltransferase YP_005279059.1 3585951 D 595495 CDS YP_005279060.1 378714167 11778114 3587026..3587337 1 NC_016902.1 PFAM: protein of unknown function DUF1778; KEGG: ssn:SSON_0410 hypothetical protein; hypothetical protein 3587337 11778114 EKO11_3419 Escherichia coli KO11FL hypothetical protein YP_005279060.1 3587026 D 595495 CDS YP_005279061.1 378714168 11779680 3587321..3587863 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSON_0409 putative acetyltransferase; N-acetyltransferase GCN5 3587863 11779680 EKO11_3420 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005279061.1 3587321 D 595495 CDS YP_005279062.1 378714169 11778116 3589251..3590615 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: ebd:ECBD_3234 major facilitator superfamily MFS_1; major facilitator superfamily protein 3590615 11778116 EKO11_3422 Escherichia coli KO11FL major facilitator superfamily protein YP_005279062.1 3589251 D 595495 CDS YP_005279063.1 378714170 11778117 complement(3590743..3591234) 1 NC_016902.1 KEGG: sbc:SbBS512_E0348 putative nucleotide-binding protein; manually curated; PFAM: protein of unknown function DUF520; hypothetical protein 3591234 11778117 EKO11_3423 Escherichia coli KO11FL hypothetical protein YP_005279063.1 3590743 R 595495 CDS YP_005279064.1 378714171 11778118 3591402..3592313 1 NC_016902.1 TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: ebd:ECBD_3236 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 3592313 11778118 EKO11_3424 Escherichia coli KO11FL 2-dehydropantoate 2-reductase YP_005279064.1 3591402 D 595495 CDS YP_005279065.1 378714172 11778119 3592276..3592866 1 NC_016902.1 KEGG: sbc:SbBS512_E0346 DJ-1 family protein; TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain-containing protein; DJ-1 family protein 3592866 11778119 EKO11_3425 Escherichia coli KO11FL DJ-1 family protein YP_005279065.1 3592276 D 595495 CDS YP_005279066.1 378714173 11778120 complement(3592920..3594368) 1 NC_016902.1 KEGG: eoh:ECO103_0397 thiamine biosynthesis protein ThiI; TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: Thiamine biosynthesis protein-like; THUMP domain-containing protein; thiamine biosynthesis/tRNA modification protein ThiI 3594368 11778120 EKO11_3426 Escherichia coli KO11FL thiamine biosynthesis/tRNA modification protein ThiI YP_005279066.1 3592920 R 595495 CDS YP_005279067.1 378714174 11778121 3594574..3594816 1 NC_016902.1 KEGG: sdy:SDY_0308 exodeoxyribonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 3594816 11778121 EKO11_3427 Escherichia coli KO11FL exodeoxyribonuclease VII small subunit YP_005279067.1 3594574 D 595495 CDS YP_005279068.1 378714175 11778122 3594816..3595715 1 NC_016902.1 PFAM: Polyprenyl synthetase; KEGG: eoh:ECO103_0395 geranyltranstransferase; polyprenyl synthetase 3595715 11778122 EKO11_3428 Escherichia coli KO11FL polyprenyl synthetase YP_005279068.1 3594816 D 595495 CDS YP_005279069.1 378714176 11778123 3595740..3597602 1 NC_016902.1 KEGG: eoi:ECO111_0450 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein; deoxyxylulose-5-phosphate synthase 3597602 11778123 EKO11_3429 Escherichia coli KO11FL deoxyxylulose-5-phosphate synthase YP_005279069.1 3595740 D 595495 CDS YP_005279070.1 378714177 11778124 3597782..3598756 1 NC_016902.1 PFAM: aldo/keto reductase; KEGG: ebw:BWG_0301 2-carboxybenzaldehyde reductase; aldo/keto reductase 3598756 11778124 EKO11_3430 Escherichia coli KO11FL aldo/keto reductase YP_005279070.1 3597782 D 595495 CDS YP_005279071.1 378714178 11779681 complement(3598810..3599328) 1 NC_016902.1 KEGG: sbc:SbBS512_E0339 phosphatidylglycerophosphatase A; PFAM: phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 3599328 11779681 EKO11_3431 Escherichia coli KO11FL phosphatidylglycerophosphatase YP_005279071.1 3598810 R 595495 CDS YP_005279072.1 378714179 11778125 complement(3599306..3600283) 1 NC_016902.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: eoh:ECO103_0391 thiamine monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 3600283 11778125 EKO11_3432 Escherichia coli KO11FL thiamine-monophosphate kinase YP_005279072.1 3599306 R 595495 CDS YP_005279073.1 378714180 11778126 complement(3600361..3600780) 1 NC_016902.1 KEGG: sdy:SDY_0318 transcription antitermination protein NusB; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; NusB antitermination factor 3600780 11778126 EKO11_3433 Escherichia coli KO11FL NusB antitermination factor YP_005279073.1 3600361 R 595495 CDS YP_005279074.1 378714181 11778127 complement(3600800..3601270) 1 NC_016902.1 KEGG: cko:CKO_02746 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 3601270 11778127 EKO11_3434 Escherichia coli KO11FL 6,7-dimethyl-8-ribityllumazine synthase YP_005279074.1 3600800 R 595495 CDS YP_005279075.1 378714182 11778128 complement(3601359..3602462) 1 NC_016902.1 TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: eoi:ECO111_0444 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein RibD 3602462 11778128 EKO11_3435 Escherichia coli KO11FL riboflavin biosynthesis protein RibD YP_005279075.1 3601359 R 595495 CDS YP_005279076.1 378714183 11779682 complement(3602466..3602915) 1 NC_016902.1 PFAM: ATP-cone domain protein; KEGG: sdy:SDY_0321 transcriptional regulator NrdR; ATP-cone domain-containing protein 3602915 11779682 EKO11_3436 Escherichia coli KO11FL ATP-cone domain-containing protein YP_005279076.1 3602466 R 595495 CDS YP_005279077.1 378714184 11778129 3603066..3603605 1 NC_016902.1 KEGG: eoi:ECO111_0442 hypothetical protein; hypothetical protein 3603605 11778129 EKO11_3437 Escherichia coli KO11FL hypothetical protein YP_005279077.1 3603066 D 595495 CDS YP_005279078.1 378714185 11778130 3603904..3604788 1 NC_016902.1 PFAM: Nucleoside-specific channel-forming protein, Tsx-like; KEGG: sdy:SDY_0323 nucleoside channel; Nucleoside-specific channel-forming protein, Tsx-like protein 3604788 11778130 EKO11_3438 Escherichia coli KO11FL Nucleoside-specific channel-forming protein, Tsx-like protein YP_005279078.1 3603904 D 595495 CDS YP_005279079.1 378714186 11778131 complement(3604965..3605312) 1 NC_016902.1 KEGG: sdy:SDY_0324 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 3605312 11778131 EKO11_3439 Escherichia coli KO11FL HNH endonuclease YP_005279079.1 3604965 R 595495 CDS YP_005279080.1 378714187 11778132 complement(3605441..3606412) 1 NC_016902.1 KEGG: sbc:SbBS512_E0328 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecF 3606412 11778132 EKO11_3440 Escherichia coli KO11FL protein-export membrane protein SecF YP_005279080.1 3605441 R 595495 CDS YP_005279081.1 378714188 11778133 complement(3606423..3608237) 1 NC_016902.1 KEGG: sdy:SDY_0326 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecD 3608237 11778133 EKO11_3441 Escherichia coli KO11FL protein-export membrane protein SecD YP_005279081.1 3606423 R 595495 CDS YP_005279082.1 378714189 11778134 complement(3608298..3608630) 1 NC_016902.1 KEGG: sdy:SDY_0327 preprotein translocase subunit YajC; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; preprotein translocase subunit YajC 3608630 11778134 EKO11_3442 Escherichia coli KO11FL preprotein translocase subunit YajC YP_005279082.1 3608298 R 595495 CDS YP_005279083.1 378714190 11778135 complement(3608653..3609780) 1 NC_016902.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: sdy:SDY_0328 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 3609780 11778135 EKO11_3443 Escherichia coli KO11FL queuine tRNA-ribosyltransferase YP_005279083.1 3608653 R 595495 CDS YP_005279084.1 378714191 11778136 complement(3609836..3610906) 1 NC_016902.1 KEGG: sdy:SDY_0329 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 3610906 11778136 EKO11_3444 Escherichia coli KO11FL S-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_005279084.1 3609836 R 595495 CDS YP_005279085.1 378714192 11778137 3610999..3611580 1 NC_016902.1 KEGG: ssn:SSON_0381 acyl carrier protein phosphodiesterase; PFAM: protein of unknown function DUF479; ACP phosphodiesterase 3611580 11778137 EKO11_3445 Escherichia coli KO11FL ACP phosphodiesterase YP_005279085.1 3610999 D 595495 CDS YP_005279086.1 378714193 11778138 complement(3611585..3613402) 1 NC_016902.1 KEGG: eoj:ECO26_0435 maltodextrin glucosidase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; SMART: alpha amylase catalytic sub domain; alpha amylase 3613402 11778138 EKO11_3446 Escherichia coli KO11FL alpha amylase YP_005279086.1 3611585 R 595495 CDS YP_005279087.1 378714194 11778139 complement(3613558..3614931) 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_0335 putative proline-specific permease; amino acid permease 3614931 11778139 EKO11_3447 Escherichia coli KO11FL amino acid permease YP_005279087.1 3613558 R 595495 CDS YP_005279088.1 378714195 11778140 complement(3615007..3616326) 1 NC_016902.1 KEGG: sdy:SDY_0336 branched chain amino acid transport system II carrier protein; TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 3616326 11778140 EKO11_3448 Escherichia coli KO11FL branched-chain amino acid transport system II carrier protein YP_005279088.1 3615007 R 595495 CDS YP_005279089.1 378714196 11778141 complement(3616733..3618028) 1 NC_016902.1 TIGRFAM: phosphate regulon sensor kinase PhoR; PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: ebw:BWG_0282 phosphate regulon sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 3618028 11778141 EKO11_3449 Escherichia coli KO11FL PAS/PAC sensor signal transduction histidine kinase YP_005279089.1 3616733 R 595495 CDS YP_005279090.1 378714197 11778142 complement(3618086..3618775) 1 NC_016902.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: sbc:SbBS512_E0318 transcriptional regulator PhoB; SMART: response regulator receiver; winged helix family two component transcriptional regulator PhoB 3618775 11778142 EKO11_3450 Escherichia coli KO11FL winged helix family two component transcriptional regulator PhoB YP_005279090.1 3618086 R 595495 CDS YP_005279091.1 378714198 11778143 3618965..3620167 1 NC_016902.1 KEGG: ebd:ECBD_3263 exonuclease subunit SbcD; TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; nuclease SbcCD subunit D 3620167 11778143 EKO11_3451 Escherichia coli KO11FL nuclease SbcCD subunit D YP_005279091.1 3618965 D 595495 CDS YP_005279092.1 378714199 11778144 3620164..3623307 1 NC_016902.1 KEGG: etw:ECSP_0459 exonuclease subunit SbcC; TIGRFAM: exonuclease SbcC; PFAM: SMC domain protein; exonuclease SbcC 3623307 11778144 EKO11_3452 Escherichia coli KO11FL exonuclease SbcC YP_005279092.1 3620164 D 595495 CDS YP_005279093.1 378714200 11778145 3623349..3624617 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eok:G2583_0504 protein AraJ; major facilitator superfamily protein 3624617 11778145 EKO11_3453 Escherichia coli KO11FL major facilitator superfamily protein YP_005279093.1 3623349 D 595495 CDS YP_005279094.1 378714201 11779683 complement(3624760..3625668) 1 NC_016902.1 PFAM: ROK family protein; KEGG: eoi:ECO111_0424 fructokinase; ROK family protein 3625668 11779683 EKO11_3454 Escherichia coli KO11FL ROK family protein YP_005279094.1 3624760 R 595495 CDS YP_005279095.1 378714202 11778146 3625727..3626704 1 NC_016902.1 PFAM: exonuclease RdgC; KEGG: ebd:ECBD_3268 putative exonuclease RdgC; exonuclease RdgC 3626704 11778146 EKO11_3455 Escherichia coli KO11FL exonuclease RdgC YP_005279095.1 3625727 D 595495 CDS YP_005279096.1 378714203 11778147 complement(3626862..3627143) 1 NC_016902.1 manually curated; KEGG: sbc:SbBS512_E0310 hypothetical protein; hypothetical protein 3627143 11778147 EKO11_3456 Escherichia coli KO11FL hypothetical protein YP_005279096.1 3626862 R 595495 CDS YP_005279097.1 378714204 11779684 complement(3627351..3627635) 1 NC_016902.1 PFAM: protein of unknown function DUF1255; KEGG: sbc:SbBS512_E0308 hypothetical protein; hypothetical protein 3627635 11779684 EKO11_3457 Escherichia coli KO11FL hypothetical protein YP_005279097.1 3627351 R 595495 CDS YP_005279098.1 378714205 11778148 complement(3627707..3628384) 1 NC_016902.1 PFAM: AroM family protein; KEGG: sbc:SbBS512_E0307 hypothetical protein; AroM family protein 3628384 11778148 EKO11_3458 Escherichia coli KO11FL AroM family protein YP_005279098.1 3627707 R 595495 CDS YP_005279099.1 378714206 11779685 complement(3628642..3628833) 1 NC_016902.1 KEGG: sbc:SbBS512_E0306 hypothetical protein; hypothetical protein 3628833 11779685 EKO11_3459 Escherichia coli KO11FL hypothetical protein YP_005279099.1 3628642 R 595495 CDS YP_005279100.1 378714207 11778149 complement(3628883..3629407) 1 NC_016902.1 KEGG: sbo:SBO_0283 shikimate kinase II; PFAM: shikimate kinase; shikimate kinase 3629407 11778149 EKO11_3460 Escherichia coli KO11FL shikimate kinase YP_005279100.1 3628883 R 595495 CDS YP_005279101.1 378714208 11778150 complement(3629590..3630048) 1 NC_016902.1 PFAM: protein of unknown function DUF188; KEGG: sdy:SDY_0357 hypothetical protein; hypothetical protein 3630048 11778150 EKO11_3461 Escherichia coli KO11FL hypothetical protein YP_005279101.1 3629590 R 595495 CDS YP_005279102.1 378714209 11778151 3630168..3630977 1 NC_016902.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: sfx:S0330 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase 3630977 11778151 EKO11_3462 Escherichia coli KO11FL pyrroline-5-carboxylate reductase YP_005279102.1 3630168 D 595495 CDS YP_005279103.1 378714210 11778152 complement(3630994..3632109) 1 NC_016902.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; KEGG: sbo:SBO_0280 diguanylate cyclase AdrA; SMART: GGDEF domain containing protein; diguanylate cyclase 3632109 11778152 EKO11_3463 Escherichia coli KO11FL diguanylate cyclase YP_005279103.1 3630994 R 595495 CDS YP_005279104.1 378714211 11778153 complement(3632211..3632531) 1 NC_016902.1 PFAM: PsiF repeat-containing protein; KEGG: eoh:ECO103_0359 hypothetical protein; PsiF repeat-containing protein 3632531 11778153 EKO11_3464 Escherichia coli KO11FL PsiF repeat-containing protein YP_005279104.1 3632211 R 595495 CDS YP_005279105.1 378714212 11778154 complement(3632650..3634065) 1 NC_016902.1 PFAM: Alkaline phosphatase; KEGG: ebw:BWG_0267 alkaline phosphatase; SMART: Alkaline phosphatase; alkaline phosphatase 3634065 11778154 EKO11_3465 Escherichia coli KO11FL alkaline phosphatase YP_005279105.1 3632650 R 595495 CDS YP_005279106.1 378714213 11778155 complement(3634166..3634426) 1 NC_016902.1 PFAM: Sigma-S stabilisation anti-adaptor protein; KEGG: ssn:SSON_0357 hypothetical protein; Sigma-S stabilization anti-adaptor protein 3634426 11778155 EKO11_3466 Escherichia coli KO11FL Sigma-S stabilization anti-adaptor protein YP_005279106.1 3634166 R 595495 CDS YP_005279107.1 378714214 11778156 3634889..3635983 1 NC_016902.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: sfx:S0254 D-alanyl-alanine synthetase A; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 3635983 11778156 EKO11_3467 Escherichia coli KO11FL D-alanine--D-alanine ligase YP_005279107.1 3634889 D 595495 CDS YP_005279108.1 378714215 11778157 complement(3636007..3636288) 1 NC_016902.1 manually curated; KEGG: sbc:SbBS512_E0297 hypothetical protein; hypothetical protein 3636288 11778157 EKO11_3468 Escherichia coli KO11FL hypothetical protein YP_005279108.1 3636007 R 595495 CDS YP_005279109.1 378714216 11778158 3636479..3636787 1 NC_016902.1 KEGG: sbc:SbBS512_E0296 hypothetical protein; hypothetical protein 3636787 11778158 EKO11_3469 Escherichia coli KO11FL hypothetical protein YP_005279109.1 3636479 D 595495 CDS YP_005279110.1 378714217 11778159 complement(3636846..3637940) 1 NC_016902.1 PFAM: protein of unknown function DUF1615; KEGG: sbo:SBO_0273 hypothetical protein; hypothetical protein 3637940 11778159 EKO11_3470 Escherichia coli KO11FL hypothetical protein YP_005279110.1 3636846 R 595495 CDS YP_005279111.1 378714218 11778160 complement(3637953..3639173) 1 NC_016902.1 PFAM: SbmABacA family protein; KEGG: ebd:ECBD_3287 transport protein; SbmABacA family protein 3639173 11778160 EKO11_3471 Escherichia coli KO11FL SbmABacA family protein YP_005279111.1 3637953 R 595495 CDS YP_005279112.1 378714219 11778161 3639378..3639479 1 NC_016902.1 KEGG: ebd:ECBD_3288 hypothetical protein; hypothetical protein 3639479 11778161 EKO11_3472 Escherichia coli KO11FL hypothetical protein YP_005279112.1 3639378 D 595495 CDS YP_005279113.1 378714220 11778162 3639525..3640682 1 NC_016902.1 PFAM: beta-lactamase; KEGG: sbc:SbBS512_E0293 beta-lactam binding protein AmpH; beta-lactamase 3640682 11778162 EKO11_3473 Escherichia coli KO11FL beta-lactamase YP_005279113.1 3639525 D 595495 CDS YP_005279114.1 378714221 11779686 complement(3640683..3641306) 1 NC_016902.1 KEGG: ssn:SSON_0350 putative DNA-binding transcriptional regulator; putative DNA-binding transcriptional regulator 3641306 11779686 EKO11_3474 Escherichia coli KO11FL putative DNA-binding transcriptional regulator YP_005279114.1 3640683 R 595495 CDS YP_005279115.1 378714222 11778163 complement(3641394..3644372) 1 NC_016902.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: eok:G2583_0482 putative flagellin structural protein; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein 3644372 11778163 EKO11_3475 Escherichia coli KO11FL outer membrane autotransporter barrel domain-containing protein YP_005279115.1 3641394 R 595495 CDS YP_005279116.1 378714223 11778164 3644894..3645868 1 NC_016902.1 KEGG: sdy:SDY_0501 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; porphobilinogen synthase 3645868 11778164 EKO11_3476 Escherichia coli KO11FL porphobilinogen synthase YP_005279116.1 3644894 D 595495 CDS YP_005279117.1 378714224 11779687 complement(3645975..3646826) 1 NC_016902.1 KEGG: eoh:ECO103_0347 taurine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA; taurine dioxygenase 3646826 11779687 EKO11_3477 Escherichia coli KO11FL taurine dioxygenase YP_005279117.1 3645975 R 595495 CDS YP_005279118.1 378714225 11778165 complement(3646823..3647650) 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_0331 taurine transporter subunit; binding-protein-dependent transport system inner membrane protein 3647650 11778165 EKO11_3478 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005279118.1 3646823 R 595495 CDS YP_005279119.1 378714226 11779688 complement(3647647..3648414) 1 NC_016902.1 KEGG: ssn:SSON_0344 taurine transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3648414 11779688 EKO11_3479 Escherichia coli KO11FL ABC transporter YP_005279119.1 3647647 R 595495 CDS YP_005279120.1 378714227 11778166 complement(3648427..3649389) 1 NC_016902.1 TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ebd:ECBD_3296 taurine transporter substrate binding subunit; SMART: extracellular solute-binding protein family 3; taurine ABC transporter substrate-binding protein 3649389 11778166 EKO11_3480 Escherichia coli KO11FL taurine ABC transporter substrate-binding protein YP_005279120.1 3648427 R 595495 CDS YP_005279121.1 378714228 11778167 3650005..3650676 1 NC_016902.1 PFAM: LmbE family protein; KEGG: eoh:ECO103_0343 hypothetical protein; LmbE family protein 3650676 11778167 EKO11_3481 Escherichia coli KO11FL LmbE family protein YP_005279121.1 3650005 D 595495 CDS YP_005279122.1 378714229 11778168 3650686..3651882 1 NC_016902.1 PFAM: glycosyl transferase family 2; KEGG: eoj:ECO26_0396 putative glucosyltransferase; family 2 glycosyl transferase 3651882 11778168 EKO11_3482 Escherichia coli KO11FL family 2 glycosyl transferase YP_005279122.1 3650686 D 595495 CDS YP_005279123.1 378714230 11778169 3651749..3652441 1 NC_016902.1 KEGG: eoh:ECO103_0341 putative transferase; manually curated; PFAM: transferase hexapeptide repeat containing protein; transferase hexapeptide repeat containing protein 3652441 11778169 EKO11_3483 Escherichia coli KO11FL transferase hexapeptide repeat containing protein YP_005279123.1 3651749 D 595495 CDS YP_005279124.1 378714231 11778170 3652443..3653216 1 NC_016902.1 KEGG: sbc:SbBS512_E0274 hypothetical protein; hypothetical protein 3653216 11778170 EKO11_3484 Escherichia coli KO11FL hypothetical protein YP_005279124.1 3652443 D 595495 CDS YP_005279125.1 378714232 11778171 3653401..3653676 1 NC_016902.1 PFAM: protein of unknown function DUF156; KEGG: sbc:SbBS512_E0272 regulator protein FrmR; hypothetical protein 3653676 11778171 EKO11_3485 Escherichia coli KO11FL hypothetical protein YP_005279125.1 3653401 D 595495 CDS YP_005279126.1 378714233 11778172 3653711..3654820 1 NC_016902.1 KEGG: sbc:SbBS512_E0271 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3654820 11778172 EKO11_3486 Escherichia coli KO11FL S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_005279126.1 3653711 D 595495 CDS YP_005279127.1 378714234 11778173 3654913..3655746 1 NC_016902.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: ssn:SSON_0334 putative esterase; PFAM: esterase; S-formylglutathione hydrolase 3655746 11778173 EKO11_3487 Escherichia coli KO11FL S-formylglutathione hydrolase YP_005279127.1 3654913 D 595495 CDS YP_005279128.1 378714235 11778174 complement(3655972..3656511) 1 NC_016902.1 PFAM: Protein of unknown function DUF2058; KEGG: ebd:ECBD_3303 hypothetical protein; hypothetical protein 3656511 11778174 EKO11_3488 Escherichia coli KO11FL hypothetical protein YP_005279128.1 3655972 R 595495 CDS YP_005279129.1 378714236 11778175 complement(3656613..3657824) 1 NC_016902.1 KEGG: eoj:ECO26_0389 putative 3-hydroxyphenylpropionic transporter MhpT; TIGRFAM: benzoate transport; PFAM: major facilitator superfamily MFS_1; benzoate transport 3657824 11778175 EKO11_3489 Escherichia coli KO11FL benzoate transport YP_005279129.1 3656613 R 595495 CDS YP_005279130.1 378714237 11778176 complement(3658000..3659013) 1 NC_016902.1 KEGG: eoh:ECO103_0334 4-hydroxy-2-ketovalerate aldolase; TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; PFAM: pyruvate carboxyltransferase; DmpG communication domain protein; 4-hydroxy-2-oxovalerate aldolase 3659013 11778176 EKO11_3490 Escherichia coli KO11FL 4-hydroxy-2-oxovalerate aldolase YP_005279130.1 3658000 R 595495 CDS YP_005279131.1 378714238 11778177 complement(3659010..3659960) 1 NC_016902.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: ssn:SSON_0330 acetaldehyde dehydrogenase; PFAM: Acetaldehyde dehydrogenase ; Semialdehyde dehydrogenase NAD - binding; acetaldehyde dehydrogenase 3659960 11778177 EKO11_3491 Escherichia coli KO11FL acetaldehyde dehydrogenase YP_005279131.1 3659010 R 595495 CDS YP_005279132.1 378714239 11778178 complement(3659957..3660766) 1 NC_016902.1 KEGG: eoi:ECO111_0386 2-keto-4-pentenoate hydratase; PFAM: fumarylacetoacetate (FAA) hydrolase; 2-oxopent-4-enoate hydratase 3660766 11778178 EKO11_3492 Escherichia coli KO11FL 2-oxopent-4-enoate hydratase YP_005279132.1 3659957 R 595495 CDS YP_005279133.1 378714240 11778179 complement(3660776..3661642) 1 NC_016902.1 PFAM: alpha/beta hydrolase fold; KEGG: ebd:ECBD_3308 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein 3661642 11778179 EKO11_3493 Escherichia coli KO11FL alpha/beta hydrolase fold protein YP_005279133.1 3660776 R 595495 CDS YP_005279134.1 378714241 11778180 complement(3661660..3662604) 1 NC_016902.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: eoi:ECO111_0384 3-(2,3-dihydroxyphenyl)propionate dioxygenase; extradiol ring-cleavage dioxygenase class III protein subunit B 3662604 11778180 EKO11_3494 Escherichia coli KO11FL extradiol ring-cleavage dioxygenase class III protein subunit B YP_005279134.1 3661660 R 595495 CDS YP_005279135.1 378714242 11778181 complement(3662606..3664270) 1 NC_016902.1 PFAM: monooxygenase FAD-binding; KEGG: eoi:ECO111_0383 3-(3-hydroxyphenyl)propionate hydroxylase; monooxygenase FAD-binding protein 3664270 11778181 EKO11_3495 Escherichia coli KO11FL monooxygenase FAD-binding protein YP_005279135.1 3662606 R 595495 CDS YP_005279136.1 378714243 11778182 3664461..3665294 1 NC_016902.1 KEGG: eok:G2583_0459 DNA-binding protein transcriptional activator, 3HPP-binding protein; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; IclR family transcriptional regulator 3665294 11778182 EKO11_3496 Escherichia coli KO11FL IclR family transcriptional regulator YP_005279136.1 3664461 D 595495 CDS YP_005279137.1 378714244 11778183 3665362..3666453 1 NC_016902.1 KEGG: ebd:ECBD_3312 lac repressor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator 3666453 11778183 EKO11_3497 Escherichia coli KO11FL LacI family transcriptional regulator YP_005279137.1 3665362 D 595495 CDS YP_005279138.1 378714245 11778184 3666576..3669650 1 NC_016902.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 42 domain 5 loop region; KEGG: ebd:ECBD_3313 beta-D-galactosidase; glycoside hydrolase family protein 3669650 11778184 EKO11_3498 Escherichia coli KO11FL glycoside hydrolase family protein YP_005279138.1 3666576 D 595495 CDS YP_005279139.1 378714246 11778185 3669702..3670955 1 NC_016902.1 TIGRFAM: oligosaccharide/H+ symporter, major facilitator superfamily (MFS); KEGG: ebd:ECBD_3314 galactoside permease; oligosaccharide/H+ symporter, major facilitator superfamily (MFS) 3670955 11778185 EKO11_3499 Escherichia coli KO11FL oligosaccharide/H+ symporter, major facilitator superfamily (MFS) YP_005279139.1 3669702 D 595495 CDS YP_005279140.1 378714247 11779689 3671012..3671632 1 NC_016902.1 KEGG: eoh:ECO103_0324 galactoside O-acetyltransferase; galactoside O-acetyltransferase 3671632 11779689 EKO11_3500 Escherichia coli KO11FL galactoside O-acetyltransferase YP_005279140.1 3671012 D 595495 CDS YP_005279141.1 378714248 11778186 complement(3671735..3672916) 1 NC_016902.1 KEGG: ebd:ECBD_3316 putative cyanate transporter; TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; cyanate transporter 3672916 11778186 EKO11_3501 Escherichia coli KO11FL cyanate transporter YP_005279141.1 3671735 R 595495 CDS YP_005279142.1 378714249 11779690 complement(3672922..3673392) 1 NC_016902.1 TIGRFAM: cyanate lyase; KEGG: eoh:ECO103_0322 cyanate hydratase; PFAM: Cyanate lyase domain protein; cyanate lyase 3673392 11779690 EKO11_3502 Escherichia coli KO11FL cyanate lyase YP_005279142.1 3672922 R 595495 CDS YP_005279143.1 378714250 11778187 complement(3673423..3674082) 1 NC_016902.1 KEGG: ebd:ECBD_3318 carbonate dehydratase; PFAM: carbonic anhydrase; carbonate dehydratase 3674082 11778187 EKO11_3503 Escherichia coli KO11FL carbonate dehydratase YP_005279143.1 3673423 R 595495 CDS YP_005279144.1 378714251 11778188 3674192..3675091 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eoi:ECO111_0375 DNA-binding transcriptional regulator CynR; LysR family transcriptional regulator 3675091 11778188 EKO11_3504 Escherichia coli KO11FL LysR family transcriptional regulator YP_005279144.1 3674192 D 595495 CDS YP_005279145.1 378714252 11779691 complement(3675131..3676414) 1 NC_016902.1 KEGG: eoh:ECO103_0319 cytosine deaminase; PFAM: Amidohydrolase 3; cytosine deaminase 3676414 11779691 EKO11_3505 Escherichia coli KO11FL cytosine deaminase YP_005279145.1 3675131 R 595495 CDS YP_005279146.1 378714253 11778189 complement(3676404..3677663) 1 NC_016902.1 KEGG: ebd:ECBD_3321 cytosine permease; TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; NCS1 nucleoside transporter family 3677663 11778189 EKO11_3506 Escherichia coli KO11FL NCS1 nucleoside transporter family YP_005279146.1 3676404 R 595495 CDS YP_005279147.1 378714254 11778190 complement(3677900..3679786) 1 NC_016902.1 KEGG: eoh:ECO103_0317 propionyl-CoA synthetase; TIGRFAM: propionate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; propionate/CoA ligase 3679786 11778190 EKO11_3507 Escherichia coli KO11FL propionate/CoA ligase YP_005279147.1 3677900 R 595495 CDS YP_005279148.1 378714255 11778191 complement(3679826..3681277) 1 NC_016902.1 TIGRFAM: 2-methylcitrate dehydratase; KEGG: eoh:ECO103_0316 2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein; 2-methylcitrate dehydratase 3681277 11778191 EKO11_3508 Escherichia coli KO11FL 2-methylcitrate dehydratase YP_005279148.1 3679826 R 595495 CDS YP_005279149.1 378714256 11778192 complement(3681311..3682480) 1 NC_016902.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: ebd:ECBD_3324 methylcitrate synthase; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 3682480 11778192 EKO11_3509 Escherichia coli KO11FL 2-methylcitrate synthase/citrate synthase II YP_005279149.1 3681311 R 595495 CDS YP_005279150.1 378714257 11778193 complement(3682525..3683415) 1 NC_016902.1 KEGG: eoh:ECO103_0314 2-methylisocitrate lyase; TIGRFAM: methylisocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; methylisocitrate lyase 3683415 11778193 EKO11_3510 Escherichia coli KO11FL methylisocitrate lyase YP_005279150.1 3682525 R 595495 CDS YP_005279151.1 378714258 11778194 3683654..3685240 1 NC_016902.1 TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; Propionate catabolism activator domain-containing protein; helix-turn-helix Fis-type; KEGG: eoh:ECO103_0313 DNA-binding transcriptional activator PrpR; SMART: AAA ATPase; Fis family proprionate catabolism activator 3685240 11778194 EKO11_3511 Escherichia coli KO11FL Fis family proprionate catabolism activator YP_005279151.1 3683654 D 595495 CDS YP_005279152.1 378714259 11778195 complement(3685341..3685616) 1 NC_016902.1 PFAM: protein of unknown function DUF1471; KEGG: eok:G2583_0440 hypothetical protein; hypothetical protein 3685616 11778195 EKO11_3512 Escherichia coli KO11FL hypothetical protein YP_005279152.1 3685341 R 595495 CDS YP_005279153.1 378714260 11778196 3685763..3686434 1 NC_016902.1 manually curated; TIGRFAM: homoserine/threonine efflux pump; KEGG: ebr:ECB_00283 neutral amino-acid efflux system; PFAM: Lysine exporter protein (LYSE/YGGA); homoserine/threonine efflux pump 3686434 11778196 EKO11_3513 Escherichia coli KO11FL homoserine/threonine efflux pump YP_005279153.1 3685763 D 595495 CDS YP_005279154.1 378714261 11778198 complement(3687109..3687924) 1 NC_016902.1 KEGG: eoi:ECO111_0365 hypothetical protein; hypothetical protein 3687924 11778198 EKO11_3514 Escherichia coli KO11FL hypothetical protein YP_005279154.1 3687109 R 595495 CDS YP_005279155.1 378714262 11778199 complement(3688167..3689216) 1 NC_016902.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ebd:ECBD_3332 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase 3689216 11778199 EKO11_3515 Escherichia coli KO11FL alcohol dehydrogenase YP_005279155.1 3688167 R 595495 CDS YP_005279156.1 378714263 11778200 complement(3689303..3690259) 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: eok:G2583_0434 putative permease of transport system; inner-membrane translocator 3690259 11778200 EKO11_3516 Escherichia coli KO11FL inner-membrane translocator YP_005279156.1 3689303 R 595495 CDS YP_005279157.1 378714264 11778201 complement(3690256..3691227) 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: eok:G2583_0433 putative permease of transport system probably ribose specific; inner-membrane translocator 3691227 11778201 EKO11_3517 Escherichia coli KO11FL inner-membrane translocator YP_005279157.1 3690256 R 595495 CDS YP_005279158.1 378714265 11778202 complement(3691220..3692704) 1 NC_016902.1 KEGG: eoh:ECO103_0304 putative ATP-binding component of sugar ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3692704 11778202 EKO11_3518 Escherichia coli KO11FL ABC transporter YP_005279158.1 3691220 R 595495 CDS YP_005279159.1 378714266 11778203 complement(3692753..3693739) 1 NC_016902.1 KEGG: eoh:ECO103_0303 putative sugar-binding protein; putative sugar-binding protein 3693739 11778203 EKO11_3519 Escherichia coli KO11FL putative sugar-binding protein YP_005279159.1 3692753 R 595495 CDS YP_005279160.1 378714267 11779692 complement(3693990..3694400) 1 NC_016902.1 PFAM: protein of unknown function DUF437; KEGG: eoh:ECO103_0302 hypothetical protein; hypothetical protein 3694400 11779692 EKO11_3520 Escherichia coli KO11FL hypothetical protein YP_005279160.1 3693990 R 595495 CDS YP_005279161.1 378714268 11778204 complement(3694699..3696081) 1 NC_016902.1 PFAM: Amidohydrolase 3; KEGG: eoi:ECO111_0358 putative deaminase; amidohydrolase 3696081 11778204 EKO11_3521 Escherichia coli KO11FL amidohydrolase YP_005279161.1 3694699 R 595495 CDS YP_005279162.1 378714269 11778205 complement(3696091..3697041) 1 NC_016902.1 KEGG: eoh:ECO103_0300 putative carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; Carbamate kinase 3697041 11778205 EKO11_3522 Escherichia coli KO11FL Carbamate kinase YP_005279162.1 3696091 R 595495 CDS YP_005279163.1 378714270 11778206 complement(3697184..3698602) 1 NC_016902.1 PFAM: protein of unknown function DUF1116; KEGG: eoh:ECO103_0299 hypothetical protein; hypothetical protein 3698602 11778206 EKO11_3523 Escherichia coli KO11FL hypothetical protein YP_005279163.1 3697184 R 595495 CDS YP_005279164.1 378714271 11778207 complement(3698602..3700149) 1 NC_016902.1 KEGG: eoh:ECO103_0298 putative acyl-CoA synthetase; putative acyl-CoA synthetase 3700149 11778207 EKO11_3524 Escherichia coli KO11FL putative acyl-CoA synthetase YP_005279164.1 3698602 R 595495 CDS YP_005279165.1 378714272 11778208 complement(3700139..3701002) 1 NC_016902.1 KEGG: eoj:ECO26_0354 hypothetical protein; hypothetical protein 3701002 11778208 EKO11_3525 Escherichia coli KO11FL hypothetical protein YP_005279165.1 3700139 R 595495 CDS YP_005279166.1 378714273 11778209 complement(3701042..3701647) 1 NC_016902.1 KEGG: ebd:ECBD_3339 ankyrin; ankyrin 3701647 11778209 EKO11_3526 Escherichia coli KO11FL ankyrin YP_005279166.1 3701042 R 595495 CDS YP_005279167.1 378714274 11778210 3701905..3702402 1 NC_016902.1 PFAM: protein of unknown function DUF1097; KEGG: ebd:ECBD_3340 protein of unknown function DUF1097; hypothetical protein 3702402 11778210 EKO11_3527 Escherichia coli KO11FL hypothetical protein YP_005279167.1 3701905 D 595495 CDS YP_005279168.1 378714275 11778211 3702494..3703426 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ebd:ECBD_3341 transcriptional regulator, LysR family; LysR family transcriptional regulator 3703426 11778211 EKO11_3528 Escherichia coli KO11FL LysR family transcriptional regulator YP_005279168.1 3702494 D 595495 CDS YP_005279169.1 378714276 11778212 complement(3703468..3704556) 1 NC_016902.1 KEGG: eoh:ECO103_0293 putative DNA-binding transcriptional regulator; PFAM: EAL domain protein; regulatory protein LuxR; SMART: EAL domain protein; regulatory protein LuxR; diguanylate phosphodiesterase 3704556 11778212 EKO11_3529 Escherichia coli KO11FL diguanylate phosphodiesterase YP_005279169.1 3703468 R 595495 CDS YP_005279170.1 378714277 11778213 complement(3704698..3708747) 1 NC_016902.1 manually curated; TIGRFAM: outer membrane autotransporter barrel domain protein; KEGG: eok:G2583_0419 AidA-I adhesin-like protein; PFAM: Autotransporter beta- domain protein; Pertactin; outer membrane autotransporter barrel domain-containing protein 3708747 11778213 EKO11_3530 Escherichia coli KO11FL outer membrane autotransporter barrel domain-containing protein YP_005279170.1 3704698 R 595495 CDS YP_005279171.1 378714278 11778214 complement(3709254..3711287) 1 NC_016902.1 KEGG: ebd:ECBD_3344 choline transport protein BetT; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter 3711287 11778214 EKO11_3531 Escherichia coli KO11FL choline/carnitine/betaine transporter YP_005279171.1 3709254 R 595495 CDS YP_005279172.1 378714279 11778215 3711416..3712003 1 NC_016902.1 KEGG: sfv:SFV_0324 transcriptional regulator BetI; TIGRFAM: transcriptional repressor BetI; PFAM: regulatory protein TetR; TetR family transcriptional regulator 3712003 11778215 EKO11_3532 Escherichia coli KO11FL TetR family transcriptional regulator YP_005279172.1 3711416 D 595495 CDS YP_005279173.1 378714280 11778216 3712017..3713489 1 NC_016902.1 KEGG: ebd:ECBD_3346 betaine aldehyde dehydrogenase; TIGRFAM: betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; betaine aldehyde dehydrogenase 3713489 11778216 EKO11_3533 Escherichia coli KO11FL betaine aldehyde dehydrogenase YP_005279173.1 3712017 D 595495 CDS YP_005279174.1 378714281 11778217 3713503..3715173 1 NC_016902.1 KEGG: eoh:ECO103_0288 choline dehydrogenase; TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; choline dehydrogenase 3715173 11778217 EKO11_3534 Escherichia coli KO11FL choline dehydrogenase YP_005279174.1 3713503 D 595495 CDS YP_005279175.1 378714282 11778218 3715386..3716054 1 NC_016902.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: eoi:ECO111_0344 putative inner membrane protein; lipopolysaccharide biosynthesis protein 3716054 11778218 EKO11_3535 Escherichia coli KO11FL lipopolysaccharide biosynthesis protein YP_005279175.1 3715386 D 595495 CDS YP_005279176.1 378714283 11778219 complement(3716297..3716992) 1 NC_016902.1 PFAM: protein of unknown function DUF162; KEGG: sfv:SFV_0319 putative transporter; hypothetical protein 3716992 11778219 EKO11_3536 Escherichia coli KO11FL hypothetical protein YP_005279176.1 3716297 R 595495 CDS YP_005279177.1 378714284 11778220 complement(3716985..3718412) 1 NC_016902.1 KEGG: ssn:SSON_0317 hypothetical protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; iron-sulfur cluster binding protein 3718412 11778220 EKO11_3537 Escherichia coli KO11FL iron-sulfur cluster binding protein YP_005279177.1 3716985 R 595495 CDS YP_005279178.1 378714285 11778221 complement(3718423..3719142) 1 NC_016902.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ssn:SSON_0318 putative dehydrogenase subunit; hypothetical protein 3719142 11778221 EKO11_3538 Escherichia coli KO11FL hypothetical protein YP_005279178.1 3718423 R 595495 CDS YP_005279179.1 378714286 11778222 complement(3719659..3720513) 1 NC_016902.1 KEGG: eoh:ECO103_0281 putative DNA-binding transcriptional regulator, AraC-type; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 3720513 11778222 EKO11_3539 Escherichia coli KO11FL AraC family transcriptional regulator YP_005279179.1 3719659 R 595495 CDS YP_005279180.1 378714287 11778223 3720739..3722064 1 NC_016902.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ssn:SSON_0320 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3722064 11778223 EKO11_3540 Escherichia coli KO11FL FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005279180.1 3720739 D 595495 CDS YP_005279181.1 378714288 11779693 3722173..3722409 1 NC_016902.1 KEGG: ebd:ECBD_3355 protein of unknown function DUF1471; manually curated; PFAM: protein of unknown function DUF1471; hypothetical protein 3722409 11779693 EKO11_3541 Escherichia coli KO11FL hypothetical protein YP_005279181.1 3722173 D 595495 CDS YP_005279182.1 378714289 11778224 3722421..3723014 1 NC_016902.1 PFAM: protein of unknown function DUF417; KEGG: ebd:ECBD_3356 protein of unknown function DUF417; hypothetical protein 3723014 11778224 EKO11_3542 Escherichia coli KO11FL hypothetical protein YP_005279182.1 3722421 D 595495 CDS YP_005279183.1 378714290 11778225 complement(3723174..3724043) 1 NC_016902.1 PFAM: aldo/keto reductase; KEGG: sbc:SbBS512_E0266 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 3724043 11778225 EKO11_3543 Escherichia coli KO11FL aldo/keto reductase YP_005279183.1 3723174 R 595495 CDS YP_005279184.1 378714291 11778226 3724292..3725149 1 NC_016902.1 KEGG: eok:G2583_0398 putative AraC-like transcriptional regulator; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 3725149 11778226 EKO11_3544 Escherichia coli KO11FL AraC family transcriptional regulator YP_005279184.1 3724292 D 595495 CDS YP_005279185.1 378714292 11778227 complement(3725270..3729523) 1 NC_016902.1 KEGG: eoh:ECO103_0275 putative invasin; PFAM: Ig domain protein group 1 domain protein; SMART: Ig domain protein group 1 domain protein; Ig domain-containing protein group 1 domain-containing protein 3729523 11778227 EKO11_3545 Escherichia coli KO11FL Ig domain-containing protein group 1 domain-containing protein YP_005279185.1 3725270 R 595495 CDS YP_005279186.1 378714293 11778228 3730395..3730514 1 NC_016902.1 hypothetical protein 3730514 11778228 EKO11_3547 Escherichia coli KO11FL hypothetical protein YP_005279186.1 3730395 D 595495 CDS YP_005279187.1 378714294 11778229 3730639..3730740 1 NC_016902.1 KEGG: ebd:ECBD_3359 hypothetical protein; hypothetical protein 3730740 11778229 EKO11_3548 Escherichia coli KO11FL hypothetical protein YP_005279187.1 3730639 D 595495 CDS YP_005279188.1 378714295 11778230 3731100..3731366 1 NC_016902.1 KEGG: ebd:ECBD_3360 50S ribosomal protein L31 type B; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; 50S ribosomal protein L31 3731366 11778230 EKO11_3549 Escherichia coli KO11FL 50S ribosomal protein L31 YP_005279188.1 3731100 D 595495 CDS YP_005279189.1 378714296 11779695 3731366..3731506 1 NC_016902.1 KEGG: ebd:ECBD_3361 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; 50S ribosomal protein L36 3731506 11779695 EKO11_3550 Escherichia coli KO11FL 50S ribosomal protein L36 YP_005279189.1 3731366 D 595495 CDS YP_005279190.1 378714297 11778231 3732591..3733133 1 NC_016902.1 KEGG: sbo:SBO_0225 putative regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; regulatory protein LuxR 3733133 11778231 EKO11_3551 Escherichia coli KO11FL regulatory protein LuxR YP_005279190.1 3732591 D 595495 CDS YP_005279191.1 378714298 11778232 3733208..3733795 1 NC_016902.1 KEGG: eok:G2583_0385 hypothetical protein; hypothetical protein 3733795 11778232 EKO11_3552 Escherichia coli KO11FL hypothetical protein YP_005279191.1 3733208 D 595495 CDS YP_005279192.1 378714299 11778233 3733853..3734521 1 NC_016902.1 KEGG: sbo:SBO_0227 hypothetical protein; hypothetical protein 3734521 11778233 EKO11_3553 Escherichia coli KO11FL hypothetical protein YP_005279192.1 3733853 D 595495 CDS YP_005279193.1 378714300 11778234 3734547..3737072 1 NC_016902.1 KEGG: eoj:ECO26_0326 putative outer membrane usher protein; putative outer membrane usher protein 3737072 11778234 EKO11_3554 Escherichia coli KO11FL putative outer membrane usher protein YP_005279193.1 3734547 D 595495 CDS YP_005279194.1 378714301 11778235 3737062..3738705 1 NC_016902.1 KEGG: eoj:ECO26_0325 hypothetical protein; hypothetical protein 3738705 11778235 EKO11_3555 Escherichia coli KO11FL hypothetical protein YP_005279194.1 3737062 D 595495 CDS YP_005279195.1 378714302 11779696 3738674..3739384 1 NC_016902.1 KEGG: eoj:ECO26_0324 putative chaperone; putative chaperone 3739384 11779696 EKO11_3556 Escherichia coli KO11FL putative chaperone YP_005279195.1 3738674 D 595495 CDS YP_005279196.1 378714303 11778236 3739697..3740026 1 NC_016902.1 KEGG: ebd:ECBD_3369 protein of unknown function UPF0153; manually curated; PFAM: protein of unknown function UPF0153; hypothetical protein 3740026 11778236 EKO11_3557 Escherichia coli KO11FL hypothetical protein YP_005279196.1 3739697 D 595495 CDS YP_005279197.1 378714304 11778238 3741304..3741993 1 NC_016902.1 PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: ebd:ECBD_3371 putative xanthine dehydrogenase iron-sulfur-binding subunit; (2Fe-2S)-binding domain-containing protein 3741993 11778238 EKO11_3559 Escherichia coli KO11FL (2Fe-2S)-binding domain-containing protein YP_005279197.1 3741304 D 595495 CDS YP_005279198.1 378714305 11778239 3741990..3742946 1 NC_016902.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: eoh:ECO103_0262 putative oxidoreductase; molybdopterin dehydrogenase FAD-binding protein 3742946 11778239 EKO11_3560 Escherichia coli KO11FL molybdopterin dehydrogenase FAD-binding protein YP_005279198.1 3741990 D 595495 CDS YP_005279199.1 378714306 11779697 3742943..3745141 1 NC_016902.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: eoh:ECO103_0261 putative oxidoreductase; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 3745141 11779697 EKO11_3561 Escherichia coli KO11FL aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_005279199.1 3742943 D 595495 CDS YP_005279200.1 378714307 11778240 3745151..3746107 1 NC_016902.1 PFAM: protein of unknown function DUF182; KEGG: eoh:ECO103_0260 hypothetical protein; hypothetical protein 3746107 11778240 EKO11_3562 Escherichia coli KO11FL hypothetical protein YP_005279200.1 3745151 D 595495 CDS YP_005279201.1 378714308 11778241 3746086..3746496 1 NC_016902.1 PFAM: LysR substrate-binding; KEGG: eoh:ECO103_0259 putative transcriptional regulator LysR-type; LysR substrate-binding protein 3746496 11778241 EKO11_3563 Escherichia coli KO11FL LysR substrate-binding protein YP_005279201.1 3746086 D 595495 CDS YP_005279202.1 378714309 11779698 complement(3746813..3748066) 1 NC_016902.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: eoh:ECO103_0258 gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; gamma-glutamyl phosphate reductase 3748066 11779698 EKO11_3564 Escherichia coli KO11FL gamma-glutamyl phosphate reductase YP_005279202.1 3746813 R 595495 CDS YP_005279203.1 378714310 11778243 complement(3748078..3749181) 1 NC_016902.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: sdy:SDY_0474 gamma-glutamyl kinase; SMART: PUA domain containing protein; glutamate 5-kinase 3749181 11778243 EKO11_3565 Escherichia coli KO11FL glutamate 5-kinase YP_005279203.1 3748078 R 595495 CDS YP_005279204.1 378714311 11778244 3749469..3750524 1 NC_016902.1 PFAM: porin Gram-negative type; KEGG: eok:G2583_0277 outer membrane protein (porin); porin 3750524 11778244 EKO11_3566 Escherichia coli KO11FL porin YP_005279204.1 3749469 D 595495 CDS YP_005279205.1 378714312 11778245 complement(3750563..3750964) 1 NC_016902.1 PFAM: transcriptional regulator Crl; KEGG: sbc:SbBS512_E0237 DNA-binding transcriptional regulator Crl; transcriptional regulator Crl 3750964 11778245 EKO11_3567 Escherichia coli KO11FL transcriptional regulator Crl YP_005279205.1 3750563 R 595495 CDS YP_005279206.1 378714313 11778246 complement(3751022..3752266) 1 NC_016902.1 KEGG: eoh:ECO103_0254 fermentation/respiration switch protein; fermentation/respiration switch protein 3752266 11778246 EKO11_3568 Escherichia coli KO11FL fermentation/respiration switch protein YP_005279206.1 3751022 R 595495 CDS YP_005279207.1 378714314 11779699 complement(3752358..3752816) 1 NC_016902.1 KEGG: sdy:SDY_0479 xanthine-guanine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; xanthine phosphoribosyltransferase 3752816 11779699 EKO11_3569 Escherichia coli KO11FL xanthine phosphoribosyltransferase YP_005279207.1 3752358 R 595495 CDS YP_005279208.1 378714315 11778247 3753077..3754534 1 NC_016902.1 TIGRFAM: aminoacyl-histidine dipeptidase; KEGG: eoi:ECO111_0299 aminoacyl-histidine dipeptidase; PFAM: peptidase dimerisation domain protein; peptidase M20; aminoacyl-histidine dipeptidase 3754534 11778247 EKO11_3570 Escherichia coli KO11FL aminoacyl-histidine dipeptidase YP_005279208.1 3753077 D 595495 CDS YP_005279209.1 378714316 11778248 complement(3754591..3755205) 1 NC_016902.1 KEGG: sbc:SbBS512_E0233 peptide chain release factor-like protein; TIGRFAM: peptide chain release factor H; PFAM: Class I peptide chain release factor; peptide chain release factor H 3755205 11778248 EKO11_3571 Escherichia coli KO11FL peptide chain release factor H YP_005279209.1 3754591 R 595495 CDS YP_005279210.1 378714317 11778249 complement(3755202..3756341) 1 NC_016902.1 KEGG: eoh:ECO103_0250 hypothetical protein; TIGRFAM: release factor H-coupled RctB family protein; PFAM: protein of unknown function UPF0027; release factor H-coupled RctB family protein 3756341 11778249 EKO11_3572 Escherichia coli KO11FL release factor H-coupled RctB family protein YP_005279210.1 3755202 R 595495 CDS YP_005279211.1 378714318 11778250 complement(3756587..3757039) 1 NC_016902.1 KEGG: sbc:SbBS512_E0229 hypothetical protein; manually curated; PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3757039 11778250 EKO11_3573 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005279211.1 3756587 R 595495 CDS YP_005279212.1 378714319 11778251 complement(3757036..3758091) 1 NC_016902.1 KEGG: eoh:ECO103_0248 DNA polymerase IV; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 3758091 11778251 EKO11_3574 Escherichia coli KO11FL DNA-directed DNA polymerase YP_005279212.1 3757036 R 595495 CDS YP_005279213.1 378714320 11778252 complement(3758162..3759085) 1 NC_016902.1 PFAM: OmpA/MotB domain protein; KEGG: eoi:ECO111_0294 hypothetical protein; OmpA/MotB domain-containing protein 3759085 11778252 EKO11_3575 Escherichia coli KO11FL OmpA/MotB domain-containing protein YP_005279213.1 3758162 R 595495 CDS YP_005279214.1 378714321 11778253 complement(3759088..3759951) 1 NC_016902.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: eoj:ECO26_0287 flagellar motor protein MotA; MotA/TolQ/ExbB proton channel 3759951 11778253 EKO11_3576 Escherichia coli KO11FL MotA/TolQ/ExbB proton channel YP_005279214.1 3759088 R 595495 CDS YP_005279215.1 378714322 11778254 complement(3759964..3760680) 1 NC_016902.1 KEGG: eoj:ECO26_0286 flagellar biosynthesis sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; RNA polymerase sigma 28 subunit FliA/WhiG 3760680 11778254 EKO11_3577 Escherichia coli KO11FL RNA polymerase sigma 28 subunit FliA/WhiG YP_005279215.1 3759964 R 595495 CDS YP_005279216.1 378714323 11778255 complement(3760700..3761167) 1 NC_016902.1 PFAM: flagellar basal body-associated protein FliL; KEGG: eoi:ECO111_0291 putative lateral flagellar biogenesis protein; flagellar basal body-associated protein FliL 3761167 11778255 EKO11_3578 Escherichia coli KO11FL flagellar basal body-associated protein FliL YP_005279216.1 3760700 R 595495 CDS YP_005279217.1 378714324 11778256 complement(3761175..3762236) 1 NC_016902.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: eoj:ECO26_0284 putative lateral flagellar hook-length control protein; flagellar hook-length control protein-like protein 3762236 11778256 EKO11_3579 Escherichia coli KO11FL flagellar hook-length control protein-like protein YP_005279217.1 3761175 R 595495 CDS YP_005279218.1 378714325 11778257 complement(3762233..3762544) 1 NC_016902.1 KEGG: eoi:ECO111_0289 putative lateral flagellar chaperone protein; putative lateral flagellar chaperone protein 3762544 11778257 EKO11_3580 Escherichia coli KO11FL putative lateral flagellar chaperone protein YP_005279218.1 3762233 R 595495 CDS YP_005279219.1 378714326 11778258 complement(3762549..3762941) 1 NC_016902.1 KEGG: eoi:ECO111_0288 putative lateral flagellar protein, potentiates polymerization; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; flagellar protein FliS 3762941 11778258 EKO11_3581 Escherichia coli KO11FL flagellar protein FliS YP_005279219.1 3762549 R 595495 CDS YP_005279220.1 378714327 11778259 complement(3762964..3764280) 1 NC_016902.1 PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; KEGG: eoi:ECO111_0287 putative lateral flagellar filament capping protein; flagellar hook-associated 2 domain-containing protein 3764280 11778259 EKO11_3582 Escherichia coli KO11FL flagellar hook-associated 2 domain-containing protein YP_005279220.1 3762964 R 595495 CDS YP_005279221.1 378714328 11778260 complement(3764487..3765401) 1 NC_016902.1 PFAM: flagellin domain protein; KEGG: eoi:ECO111_0286 putative lateral flagellin; flagellin domain-containing protein 3765401 11778260 EKO11_3583 Escherichia coli KO11FL flagellin domain-containing protein YP_005279221.1 3764487 R 595495 CDS YP_005279222.1 378714329 11778261 3765887..3766729 1 NC_016902.1 PFAM: transcriptional regulator domain-containing protein; KEGG: eoi:ECO111_0285 putative lateral flagellar putative transmembrane regulator; transcriptional regulator CadC 3766729 11778261 EKO11_3584 Escherichia coli KO11FL transcriptional regulator CadC YP_005279222.1 3765887 D 595495 CDS YP_005279223.1 378714330 11778262 complement(3766788..3767765) 1 NC_016902.1 KEGG: eoj:ECO26_0278 putative lateral flagellar hook associated protein; putative lateral flagellar hook associated protein 3767765 11778262 EKO11_3585 Escherichia coli KO11FL putative lateral flagellar hook associated protein YP_005279223.1 3766788 R 595495 CDS YP_005279224.1 378714331 11779700 complement(3767782..3768711) 1 NC_016902.1 KEGG: eoi:ECO111_0283 putative lateral flagellar hook-filament junction protein; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; flagellar hook-associated protein 3 3768711 11779700 EKO11_3586 Escherichia coli KO11FL flagellar hook-associated protein 3 YP_005279224.1 3767782 R 595495 CDS YP_005279225.1 378714332 11778263 complement(3768726..3770102) 1 NC_016902.1 KEGG: eoj:ECO26_0276 putative lateral flagellar hook-filament junction protein; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar hook-associated protein FlgK 3770102 11778263 EKO11_3587 Escherichia coli KO11FL flagellar hook-associated protein FlgK YP_005279225.1 3768726 R 595495 CDS YP_005279226.1 378714333 11778264 complement(3770285..3770584) 1 NC_016902.1 PFAM: Flagellar protein FlgJ-like; KEGG: eoi:ECO111_0280 putative lateral flagellar peptidoglycan hydrolase; Flagellar protein FlgJ-like protein 3770584 11778264 EKO11_3588 Escherichia coli KO11FL Flagellar protein FlgJ-like protein YP_005279226.1 3770285 R 595495 CDS YP_005279227.1 378714334 11779701 complement(3770584..3771684) 1 NC_016902.1 PFAM: flagellar P-ring protein; KEGG: eoi:ECO111_0279 flagellar basal body P-ring protein; flagellar P-ring protein 3771684 11779701 EKO11_3589 Escherichia coli KO11FL flagellar P-ring protein YP_005279227.1 3770584 R 595495 CDS YP_005279228.1 378714335 11778265 complement(3771699..3772442) 1 NC_016902.1 PFAM: flagellar L-ring protein; KEGG: eoi:ECO111_0278 flagellar basal body L-ring protein; flagellar L-ring protein 3772442 11778265 EKO11_3590 Escherichia coli KO11FL flagellar L-ring protein YP_005279228.1 3771699 R 595495 CDS YP_005279229.1 378714336 11778266 complement(3772636..3773421) 1 NC_016902.1 KEGG: eoj:ECO26_0272 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgG 3773421 11778266 EKO11_3591 Escherichia coli KO11FL flagellar basal-body rod protein FlgG YP_005279229.1 3772636 R 595495 CDS YP_005279230.1 378714337 11778267 complement(3773500..3774237) 1 NC_016902.1 KEGG: eoi:ECO111_0276 flagellar basal body rod protein FlgF; TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; fagellar hook-basal body protein 3774237 11778267 EKO11_3592 Escherichia coli KO11FL fagellar hook-basal body protein YP_005279230.1 3773500 R 595495 CDS YP_005279231.1 378714338 11778268 complement(3774237..3775439) 1 NC_016902.1 KEGG: eoi:ECO111_0275 putative lateral flagellar hook protein; TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; fagellar hook-basal body protein 3775439 11778268 EKO11_3593 Escherichia coli KO11FL fagellar hook-basal body protein YP_005279231.1 3774237 R 595495 CDS YP_005279232.1 378714339 11778269 complement(3775524..3776237) 1 NC_016902.1 PFAM: flagellar hook capping protein; KEGG: eoi:ECO111_0274 putative lateral flagellar hook assembly protein; flagellar hook capping protein 3776237 11778269 EKO11_3594 Escherichia coli KO11FL flagellar hook capping protein YP_005279232.1 3775524 R 595495 CDS YP_005279233.1 378714340 11778270 complement(3776237..3776668) 1 NC_016902.1 KEGG: eoi:ECO111_0273 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal-body rod protein FlgC 3776668 11778270 EKO11_3595 Escherichia coli KO11FL flagellar basal-body rod protein FlgC YP_005279233.1 3776237 R 595495 CDS YP_005279234.1 378714341 11778271 complement(3776671..3777006) 1 NC_016902.1 TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: eoi:ECO111_0272 putative lateral flagellar rod protein; flagellar basal-body rod protein FlgB 3777006 11778271 EKO11_3596 Escherichia coli KO11FL flagellar basal-body rod protein FlgB YP_005279234.1 3776671 R 595495 CDS YP_005279235.1 378714342 11778272 3777088..3777825 1 NC_016902.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; KEGG: eoi:ECO111_0271 putative lateral flagellar P-ring addition protein; flagella basal body P-ring formation protein FlgA 3777825 11778272 EKO11_3597 Escherichia coli KO11FL flagella basal body P-ring formation protein FlgA YP_005279235.1 3777088 D 595495 CDS YP_005279236.1 378714343 11778273 3777906..3778184 1 NC_016902.1 KEGG: eoi:ECO111_0270 putative lateral flagellar anti-sigma factor 28 protein; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein; anti-sigma-28 factor FlgM family protein 3778184 11778273 EKO11_3598 Escherichia coli KO11FL anti-sigma-28 factor FlgM family protein YP_005279236.1 3777906 D 595495 CDS YP_005279237.1 378714344 11778274 3778197..3778625 1 NC_016902.1 PFAM: FlgN family protein; KEGG: eoi:ECO111_0269 putative lateral flagellar chaperone protein; FlgN family protein 3778625 11778274 EKO11_3599 Escherichia coli KO11FL FlgN family protein YP_005279237.1 3778197 D 595495 CDS YP_005279238.1 378714345 11778275 3778752..3779681 1 NC_016902.1 KEGG: eoi:ECO111_0268 putative lateral flagellar associated protein; putative lateral flagellar associated protein 3779681 11778275 EKO11_3600 Escherichia coli KO11FL putative lateral flagellar associated protein YP_005279238.1 3778752 D 595495 CDS YP_005279239.1 378714346 11778276 3779860..3782304 1 NC_016902.1 PFAM: glycosyl transferase family 2; KEGG: eoi:ECO111_0267 putative glycosyltransferase; family 2 glycosyl transferase 3782304 11778276 EKO11_3601 Escherichia coli KO11FL family 2 glycosyl transferase YP_005279239.1 3779860 D 595495 CDS YP_005279240.1 378714347 11778277 complement(3782726..3783316) 1 NC_016902.1 PFAM: MuA-transposase/repressor protein CI DNA-binding; KEGG: ebw:BWG_3689 repressor protein CI; MuA-transposase/repressor protein CI DNA-binding protein 3783316 11778277 EKO11_3602 Escherichia coli KO11FL MuA-transposase/repressor protein CI DNA-binding protein YP_005279240.1 3782726 R 595495 CDS YP_005279241.1 378714348 11778278 3783486..3783713 1 NC_016902.1 KEGG: pay:PAU_01004 putative phage transcriptional regulator; putative transcriptional regulator, Nlp 3783713 11778278 EKO11_3603 Escherichia coli KO11FL putative transcriptional regulator, Nlp YP_005279241.1 3783486 D 595495 CDS YP_005279242.1 378714349 11778279 3783715..3785706 1 NC_016902.1 PFAM: Mu transposase; Transposase-like Mu ; MuA-transposase/repressor protein CI DNA-binding; KEGG: sfv:SFV_0707 putative phage transposase; Mu transposase 3785706 11778279 EKO11_3604 Escherichia coli KO11FL Mu transposase YP_005279242.1 3783715 D 595495 CDS YP_005279243.1 378714350 11778280 3785745..3786683 1 NC_016902.1 PFAM: B transposition protein domain protein; ATPase associated with various cellular activities AAA_5; KEGG: xne:XNC1_3358 DNA transposition protein; B transposition protein domain protein 3786683 11778280 EKO11_3605 Escherichia coli KO11FL B transposition protein domain protein YP_005279243.1 3785745 D 595495 CDS YP_005279244.1 378714351 11778281 3786699..3786926 1 NC_016902.1 KEGG: acp:A2cp1_0644 FkbM family methyltransferase; hypothetical protein 3786926 11778281 EKO11_3606 Escherichia coli KO11FL hypothetical protein YP_005279244.1 3786699 D 595495 CDS YP_005279245.1 378714352 11778282 3786929..3787159 1 NC_016902.1 KEGG: glo:Glov_1237 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; hypothetical protein 3787159 11778282 EKO11_3607 Escherichia coli KO11FL hypothetical protein YP_005279245.1 3786929 D 595495 CDS YP_005279246.1 378714353 11778283 3787171..3787434 1 NC_016902.1 KEGG: bdu:BDU_4026 vlp protein, gamma subfamily; vlp protein, gamma subfamily 3787434 11778283 EKO11_3608 Escherichia coli KO11FL vlp protein, gamma subfamily YP_005279246.1 3787171 D 595495 CDS YP_005279247.1 378714354 11778284 3787449..3787868 1 NC_016902.1 KEGG: bth:BT_0327 glutamine ABC transporter, periplasmic glutamine-binding protein (GlnH); hypothetical protein 3787868 11778284 EKO11_3609 Escherichia coli KO11FL hypothetical protein YP_005279247.1 3787449 D 595495 CDS YP_005279248.1 378714355 11778285 3787869..3788168 1 NC_016902.1 KEGG: ypb:YPTS_3265 phage-like protein; phage-like protein 3788168 11778285 EKO11_3610 Escherichia coli KO11FL phage-like protein YP_005279248.1 3787869 D 595495 CDS YP_005279249.1 378714356 11778286 3788188..3788712 1 NC_016902.1 KEGG: pag:PLES_15581 COG4396: Mu-like prophage host-nuclease inhibitor protein Gam; hypothetical protein 3788712 11778286 EKO11_3611 Escherichia coli KO11FL hypothetical protein YP_005279249.1 3788188 D 595495 CDS YP_005279250.1 378714357 11778287 3788811..3789341 1 NC_016902.1 KEGG: cro:ROD_47011 putative prophage DNA binding protein; putative prophage DNA binding protein 3789341 11778287 EKO11_3612 Escherichia coli KO11FL putative prophage DNA binding protein YP_005279250.1 3788811 D 595495 CDS YP_005279251.1 378714358 11778288 3789341..3789871 1 NC_016902.1 KEGG: cro:ROD_47021 hypothetical protein; hypothetical protein 3789871 11778288 EKO11_3613 Escherichia coli KO11FL hypothetical protein YP_005279251.1 3789341 D 595495 CDS YP_005279252.1 378714359 11778289 3789858..3790040 1 NC_016902.1 KEGG: cro:ROD_47051 hypothetical protein; hypothetical protein 3790040 11778289 EKO11_3614 Escherichia coli KO11FL hypothetical protein YP_005279252.1 3789858 D 595495 CDS YP_005279253.1 378714360 11778290 3790042..3790344 1 NC_016902.1 KEGG: cro:ROD_47061 hypothetical protein; hypothetical protein 3790344 11778290 EKO11_3615 Escherichia coli KO11FL hypothetical protein YP_005279253.1 3790042 D 595495 CDS YP_005279254.1 378714361 11778291 complement(3790283..3790549) 1 NC_016902.1 KEGG: gau:GAU_2969 putative serine/threonine protein kinase; hypothetical protein 3790549 11778291 EKO11_3616 Escherichia coli KO11FL hypothetical protein YP_005279254.1 3790283 R 595495 CDS YP_005279255.1 378714362 11778292 3790620..3791171 1 NC_016902.1 KEGG: xne:XNC1_3365 hypothetical protein; hypothetical protein 3791171 11778292 EKO11_3617 Escherichia coli KO11FL hypothetical protein YP_005279255.1 3790620 D 595495 CDS YP_005279256.1 378714363 11778293 3791168..3791557 1 NC_016902.1 PFAM: Mor transcription activator domain protein; KEGG: vco:VC0395_A0772 positive regulator of late transcription; Mor transcription activator domain-containing protein 3791557 11778293 EKO11_3618 Escherichia coli KO11FL Mor transcription activator domain-containing protein YP_005279256.1 3791168 D 595495 CDS YP_005279257.1 378714364 11779702 3791635..3791853 1 NC_016902.1 KEGG: son:SO_2672 hypothetical protein; hypothetical protein 3791853 11779702 EKO11_3619 Escherichia coli KO11FL hypothetical protein YP_005279257.1 3791635 D 595495 CDS YP_005279258.1 378714365 11778294 3791846..3792208 1 NC_016902.1 KEGG: aau:AAur_2862 hypothetical protein; hypothetical protein 3792208 11778294 EKO11_3620 Escherichia coli KO11FL hypothetical protein YP_005279258.1 3791846 D 595495 CDS YP_005279259.1 378714366 11778295 3792218..3792337 1 NC_016902.1 hypothetical protein 3792337 11778295 EKO11_3621 Escherichia coli KO11FL hypothetical protein YP_005279259.1 3792218 D 595495 CDS YP_005279260.1 378714367 11779703 3792350..3792772 1 NC_016902.1 PFAM: Mor transcription activator domain protein; KEGG: tau:Tola_0729 Mor transcription activator domain protein; Mor transcription activator domain-containing protein 3792772 11779703 EKO11_3622 Escherichia coli KO11FL Mor transcription activator domain-containing protein YP_005279260.1 3792350 D 595495 CDS YP_005279261.1 378714368 11778296 3792867..3793382 1 NC_016902.1 KEGG: yps:YPTB1805 endolysin (lysis protein) (lysozyme); PFAM: glycoside hydrolase family 24; lysozyme 3793382 11778296 EKO11_3623 Escherichia coli KO11FL lysozyme YP_005279261.1 3792867 D 595495 CDS YP_005279262.1 378714369 11778297 3793366..3793752 1 NC_016902.1 KEGG: sed:SeD_A2275 putative Rz lytic protein; putative Rz lytic protein 3793752 11778297 EKO11_3624 Escherichia coli KO11FL putative Rz lytic protein YP_005279262.1 3793366 D 595495 CDS YP_005279263.1 378714370 11778298 3793733..3793954 1 NC_016902.1 manually curated; KEGG: kpe:KPK_4147 hypothetical protein; hypothetical protein 3793954 11778298 EKO11_3625 Escherichia coli KO11FL hypothetical protein YP_005279263.1 3793733 D 595495 CDS YP_005279264.1 378714371 11778299 3793911..3794105 1 NC_016902.1 KEGG: htu:Htur_4338 hypothetical protein; hypothetical protein 3794105 11778299 EKO11_3626 Escherichia coli KO11FL hypothetical protein YP_005279264.1 3793911 D 595495 CDS YP_005279265.1 378714372 11778300 3794105..3794404 1 NC_016902.1 KEGG: cro:ROD_47131 putative prophage membrane protein; putative prophage membrane protein 3794404 11778300 EKO11_3627 Escherichia coli KO11FL putative prophage membrane protein YP_005279265.1 3794105 D 595495 CDS YP_005279266.1 378714373 11778301 3794401..3794691 1 NC_016902.1 KEGG: tau:Tola_0736 hypothetical protein; hypothetical protein 3794691 11778301 EKO11_3628 Escherichia coli KO11FL hypothetical protein YP_005279266.1 3794401 D 595495 CDS YP_005279267.1 378714374 11778302 3794703..3795278 1 NC_016902.1 KEGG: tau:Tola_0737 hypothetical protein; hypothetical protein 3795278 11778302 EKO11_3629 Escherichia coli KO11FL hypothetical protein YP_005279267.1 3794703 D 595495 CDS YP_005279268.1 378714375 11778303 3795286..3796941 1 NC_016902.1 KEGG: cro:ROD_47161 putative terminase large subunit; putative terminase large subunit 3796941 11778303 EKO11_3630 Escherichia coli KO11FL putative terminase large subunit YP_005279268.1 3795286 D 595495 CDS YP_005279269.1 378714376 11778304 3796941..3798479 1 NC_016902.1 PFAM: protein of unknown function DUF935; KEGG: cro:ROD_47171 putative phage portal protein; hypothetical protein 3798479 11778304 EKO11_3631 Escherichia coli KO11FL hypothetical protein YP_005279269.1 3796941 D 595495 CDS YP_005279270.1 378714377 11778305 3798460..3799779 1 NC_016902.1 KEGG: cro:ROD_47181 putative phage head assembly protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; phage head morphogenesis protein 3799779 11778305 EKO11_3632 Escherichia coli KO11FL phage head morphogenesis protein YP_005279270.1 3798460 D 595495 CDS YP_005279271.1 378714378 11778306 3799776..3800246 1 NC_016902.1 TIGRFAM: phage virion morphogenesis protein; KEGG: cro:ROD_47191 hypothetical protein; phage virion morphogenesis protein 3800246 11778306 EKO11_3633 Escherichia coli KO11FL phage virion morphogenesis protein YP_005279271.1 3799776 D 595495 CDS YP_005279272.1 378714379 11778307 3800443..3801528 1 NC_016902.1 PFAM: Mu-like prophage I protein; KEGG: hin:HI1504 I protein; Mu-like prophage I protein 3801528 11778307 EKO11_3634 Escherichia coli KO11FL Mu-like prophage I protein YP_005279272.1 3800443 D 595495 CDS YP_005279273.1 378714380 11778308 3801525..3802442 1 NC_016902.1 KEGG: cro:ROD_47221 phage major head subunit; phage major head subunit 3802442 11778308 EKO11_3635 Escherichia coli KO11FL phage major head subunit YP_005279273.1 3801525 D 595495 CDS YP_005279274.1 378714381 11778309 3802509..3802919 1 NC_016902.1 KEGG: son:SO_0676 hypothetical protein; hypothetical protein 3802919 11778309 EKO11_3636 Escherichia coli KO11FL hypothetical protein YP_005279274.1 3802509 D 595495 CDS YP_005279275.1 378714382 11778310 3802916..3803341 1 NC_016902.1 PFAM: protein of unknown function DUF1320; KEGG: cro:ROD_47241 putative prophage membrane protein; hypothetical protein 3803341 11778310 EKO11_3637 Escherichia coli KO11FL hypothetical protein YP_005279275.1 3802916 D 595495 CDS YP_005279276.1 378714383 11778311 3803341..3803889 1 NC_016902.1 PFAM: Domain of unknown function DUF1834; KEGG: cro:ROD_47251 hypothetical protein; hypothetical protein 3803889 11778311 EKO11_3638 Escherichia coli KO11FL hypothetical protein YP_005279276.1 3803341 D 595495 CDS YP_005279277.1 378714384 11779704 3803873..3804079 1 NC_016902.1 KEGG: cro:ROD_47261 hypothetical protein; hypothetical protein 3804079 11779704 EKO11_3639 Escherichia coli KO11FL hypothetical protein YP_005279277.1 3803873 D 595495 CDS YP_005279278.1 378714385 11778312 3804076..3805563 1 NC_016902.1 KEGG: cro:ROD_47271 phage tail sheath protein; phage tail sheath protein 3805563 11778312 EKO11_3640 Escherichia coli KO11FL phage tail sheath protein YP_005279278.1 3804076 D 595495 CDS YP_005279279.1 378714386 11778313 3805573..3805929 1 NC_016902.1 PFAM: Tail tube protein, bacteriophage; KEGG: cro:ROD_47281 phage tail tube protein; Tail tube protein, bacteriophage 3805929 11778313 EKO11_3641 Escherichia coli KO11FL Tail tube protein, bacteriophage YP_005279279.1 3805573 D 595495 CDS YP_005279280.1 378714387 11779705 3805939..3806373 1 NC_016902.1 PFAM: Mu-like prophage FluMu protein gp41; KEGG: cro:ROD_47291 hypothetical protein; Mu-like prophage FluMu protein gp41 3806373 11779705 EKO11_3642 Escherichia coli KO11FL Mu-like prophage FluMu protein gp41 YP_005279280.1 3805939 D 595495 CDS YP_005279281.1 378714388 11779706 3806518..3808590 1 NC_016902.1 TIGRFAM: phage tape measure protein; KEGG: cro:ROD_47301 phage tail tape measure protein; phage tape measure protein 3808590 11779706 EKO11_3643 Escherichia coli KO11FL phage tape measure protein YP_005279281.1 3806518 D 595495 CDS YP_005279282.1 378714389 11778314 3808595..3810082 1 NC_016902.1 PFAM: DNA circulation family protein; KEGG: cro:ROD_47311 phage DNA circularisation protein; DNA circulation family protein 3810082 11778314 EKO11_3644 Escherichia coli KO11FL DNA circulation family protein YP_005279282.1 3808595 D 595495 CDS YP_005279283.1 378714390 11778315 3810075..3811214 1 NC_016902.1 KEGG: cro:ROD_47321 putative phage baseplate protein; putative phage baseplate protein 3811214 11778315 EKO11_3645 Escherichia coli KO11FL putative phage baseplate protein YP_005279283.1 3810075 D 595495 CDS YP_005279284.1 378714391 11779707 3811202..3811795 1 NC_016902.1 KEGG: cro:ROD_47331 phage baseplate assembly protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; phage baseplate assembly protein V 3811795 11779707 EKO11_3646 Escherichia coli KO11FL phage baseplate assembly protein V YP_005279284.1 3811202 D 595495 CDS YP_005279285.1 378714392 11778316 3811792..3812229 1 NC_016902.1 PFAM: GP46 family protein; KEGG: cro:ROD_47341 hypothetical protein; GP46 family protein 3812229 11778316 EKO11_3647 Escherichia coli KO11FL GP46 family protein YP_005279285.1 3811792 D 595495 CDS YP_005279286.1 378714393 11779708 3812230..3813312 1 NC_016902.1 PFAM: Baseplate J family protein; KEGG: cro:ROD_47351 hypothetical protein; baseplate J family protein 3813312 11779708 EKO11_3648 Escherichia coli KO11FL baseplate J family protein YP_005279286.1 3812230 D 595495 CDS YP_005279287.1 378714394 11778317 3813303..3813845 1 NC_016902.1 KEGG: cro:ROD_47361 hypothetical protein; hypothetical protein 3813845 11778317 EKO11_3649 Escherichia coli KO11FL hypothetical protein YP_005279287.1 3813303 D 595495 CDS YP_005279288.1 378714395 11778318 3813845..3815359 1 NC_016902.1 PFAM: tail fiber repeat 2 protein; KEGG: sbo:SBO_1394 putative bacteriophage tail protein; tail fiber repeat 2 protein 3815359 11778318 EKO11_3650 Escherichia coli KO11FL tail fiber repeat 2 protein YP_005279288.1 3813845 D 595495 CDS YP_005279289.1 378714396 11778319 3815362..3815889 1 NC_016902.1 PFAM: tail assembly chaperone gp38; KEGG: sbo:SBO_1393 putative tail fiber assembly protein; tail assembly chaperone gp38 3815889 11778319 EKO11_3651 Escherichia coli KO11FL tail assembly chaperone gp38 YP_005279289.1 3815362 D 595495 CDS YP_005279290.1 378714397 11778320 complement(3815918..3816451) 1 NC_016902.1 PFAM: tail assembly chaperone gp38; KEGG: cro:ROD_36601 phage tail fibre assembly protein; tail assembly chaperone gp38 3816451 11778320 EKO11_3652 Escherichia coli KO11FL tail assembly chaperone gp38 YP_005279290.1 3815918 R 595495 CDS YP_005279291.1 378714398 11778321 complement(3816454..3817449) 1 NC_016902.1 KEGG: eoh:ECO103_1890 putative bacteriophage tail protein; putative bacteriophage tail protein 3817449 11778321 EKO11_3653 Escherichia coli KO11FL putative bacteriophage tail protein YP_005279291.1 3816454 R 595495 CDS YP_005279292.1 378714399 11778322 3817479..3818060 1 NC_016902.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: sdy:SDY_1916 putative DNA-invertase; Resolvase domain-containing protein 3818060 11778322 EKO11_3654 Escherichia coli KO11FL Resolvase domain-containing protein YP_005279292.1 3817479 D 595495 CDS YP_005279293.1 378714400 11778323 3818155..3818343 1 NC_016902.1 KEGG: cro:ROD_19792 putative prophage DNA modification regulator; hypothetical protein 3818343 11778323 EKO11_3655 Escherichia coli KO11FL hypothetical protein YP_005279293.1 3818155 D 595495 CDS YP_005279294.1 378714401 11778324 3818294..3818989 1 NC_016902.1 KEGG: sdy:SDY_1915 phage Mu Mom-like protein; phage Mu Mom-like protein 3818989 11778324 EKO11_3656 Escherichia coli KO11FL phage Mu Mom-like protein YP_005279294.1 3818294 D 595495 CDS YP_005279295.1 378714402 11778325 complement(3819144..3819539) 1 NC_016902.1 TIGRFAM: cytidyltransferase-related domain protein; KEGG: eoi:ECO111_0266 putative glycerol-3-phosphate cytidylyltransferase; PFAM: cytidylyltransferase; cytidyltransferase 3819539 11778325 EKO11_3657 Escherichia coli KO11FL cytidyltransferase YP_005279295.1 3819144 R 595495 CDS YP_005279296.1 378714403 11778326 complement(3819542..3819976) 1 NC_016902.1 TIGRFAM: flagellar export protein FliJ; KEGG: eoi:ECO111_0265 putative lateral flagellar export/assembly protein; flagellar export protein FliJ 3819976 11778326 EKO11_3658 Escherichia coli KO11FL flagellar export protein FliJ YP_005279296.1 3819542 R 595495 CDS YP_005279297.1 378714404 11778327 complement(3819979..3821316) 1 NC_016902.1 TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: eoi:ECO111_0264 putative lateral flagellum-specific ATP synthase; SMART: AAA ATPase; FliI/YscN family ATPase 3821316 11778327 EKO11_3659 Escherichia coli KO11FL FliI/YscN family ATPase YP_005279297.1 3819979 R 595495 CDS YP_005279298.1 378714405 11778328 complement(3821309..3822019) 1 NC_016902.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: eoi:ECO111_0263 flagellar assembly protein H; flagellar assembly protein FliH/type III secretion system HrpE 3822019 11778328 EKO11_3660 Escherichia coli KO11FL flagellar assembly protein FliH/type III secretion system HrpE YP_005279298.1 3821309 R 595495 CDS YP_005279299.1 378714406 11778329 complement(3822023..3823033) 1 NC_016902.1 PFAM: flagellar motor switch protein FliG; KEGG: eoj:ECO26_0256 flagellar motor switch protein G; flagellar motor switch protein FliG 3823033 11778329 EKO11_3661 Escherichia coli KO11FL flagellar motor switch protein FliG YP_005279299.1 3822023 R 595495 CDS YP_005279300.1 378714407 11778330 complement(3823011..3824657) 1 NC_016902.1 KEGG: eoj:ECO26_0255 flagellar MS-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; flagellar M-ring protein FliF 3824657 11778330 EKO11_3662 Escherichia coli KO11FL flagellar M-ring protein FliF YP_005279300.1 3823011 R 595495 CDS YP_005279301.1 378714408 11778331 complement(3824662..3825003) 1 NC_016902.1 PFAM: flagellar hook-basal body complex protein FliE; KEGG: eoi:ECO111_0260 putative lateral flagellar basal-body component protein; flagellar hook-basal body complex protein FliE 3825003 11778331 EKO11_3663 Escherichia coli KO11FL flagellar hook-basal body complex protein FliE YP_005279301.1 3824662 R 595495 CDS YP_005279302.1 378714409 11778332 complement(3825018..3826004) 1 NC_016902.1 KEGG: eoi:ECO111_0259 putative lateral flagellar RpoN-interacting regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; Fis family sigma-54 specific transcriptional regulator 3826004 11778332 EKO11_3664 Escherichia coli KO11FL Fis family sigma-54 specific transcriptional regulator YP_005279302.1 3825018 R 595495 CDS YP_005279303.1 378714410 11778333 3826391..3827242 1 NC_016902.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: eoi:ECO111_0258 putative lateral flagellar export/assembly protein; surface presentation of antigens (SPOA) protein 3827242 11778333 EKO11_3665 Escherichia coli KO11FL surface presentation of antigens (SPOA) protein YP_005279303.1 3826391 D 595495 CDS YP_005279304.1 378714411 11778334 3827235..3827606 1 NC_016902.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: eoi:ECO111_0257 putative lateral flagellar motor switching and energizing component; surface presentation of antigens (SPOA) protein 3827606 11778334 EKO11_3666 Escherichia coli KO11FL surface presentation of antigens (SPOA) protein YP_005279304.1 3827235 D 595495 CDS YP_005279305.1 378714412 11778335 3827603..3828355 1 NC_016902.1 KEGG: eoi:ECO111_0256 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP 3828355 11778335 EKO11_3667 Escherichia coli KO11FL flagellar biosynthetic protein FliP YP_005279305.1 3827603 D 595495 CDS YP_005279306.1 378714413 11779709 3828355..3828630 1 NC_016902.1 PFAM: export protein FliQ family 3; KEGG: eoj:ECO26_0249 putative lateral flagellar biosynthesis protein; export protein FliQ family 3 3828630 11779709 EKO11_3668 Escherichia coli KO11FL export protein FliQ family 3 YP_005279306.1 3828355 D 595495 CDS YP_005279307.1 378714414 11778336 3828632..3829414 1 NC_016902.1 KEGG: eoj:ECO26_0248 putative lateral flagellar export pore protein; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; flagellar biosynthetic protein FliR 3829414 11778336 EKO11_3669 Escherichia coli KO11FL flagellar biosynthetic protein FliR YP_005279307.1 3828632 D 595495 CDS YP_005279308.1 378714415 11778337 3829404..3830543 1 NC_016902.1 PFAM: type III secretion exporter; KEGG: eoi:ECO111_0253 flagellar biosynthesis protein FlhB; type III secretion exporter 3830543 11778337 EKO11_3670 Escherichia coli KO11FL type III secretion exporter YP_005279308.1 3829404 D 595495 CDS YP_005279309.1 378714416 11778338 3830527..3832620 1 NC_016902.1 PFAM: type III secretion FHIPEP protein; KEGG: eoi:ECO111_0252 putative lateral flagellar system protein; type III secretion FHIPEP protein 3832620 11778338 EKO11_3671 Escherichia coli KO11FL type III secretion FHIPEP protein YP_005279309.1 3830527 D 595495 CDS YP_005279310.1 378714417 11778339 3832725..3833003 1 NC_016902.1 KEGG: eoh:ECO103_0245 putative HicA; putative HicA 3833003 11778339 EKO11_3672 Escherichia coli KO11FL putative HicA YP_005279310.1 3832725 D 595495 CDS YP_005279311.1 378714418 11778340 3832996..3833352 1 NC_016902.1 KEGG: eoh:ECO103_0244 putative HicB; putative HicB 3833352 11778340 EKO11_3673 Escherichia coli KO11FL putative HicB YP_005279311.1 3832996 D 595495 CDS YP_005279312.1 378714419 11778341 complement(3833409..3834182) 1 NC_016902.1 PFAM: NLP/P60 protein; KEGG: eoj:ECO26_0243 putative lipoprotein and C40 family peptidase; NLP/P60 protein 3834182 11778341 EKO11_3674 Escherichia coli KO11FL NLP/P60 protein YP_005279312.1 3833409 R 595495 CDS YP_005279313.1 378714420 11778342 3834368..3834628 1 NC_016902.1 KEGG: ssn:SSON_0268 damage-inducible protein J; TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; RelB/DinJ family addiction module antitoxin 3834628 11778342 EKO11_3675 Escherichia coli KO11FL RelB/DinJ family addiction module antitoxin YP_005279313.1 3834368 D 595495 CDS YP_005279314.1 378714421 11778343 3834631..3834909 1 NC_016902.1 KEGG: ssn:SSON_0267 hypothetical protein; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; RelE/StbE family addiction module toxin 3834909 11778343 EKO11_3676 Escherichia coli KO11FL RelE/StbE family addiction module toxin YP_005279314.1 3834631 D 595495 CDS YP_005279315.1 378714422 11779710 3835065..3835805 1 NC_016902.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_0250 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3835805 11779710 EKO11_3677 Escherichia coli KO11FL ErfK/YbiS/YcfS/YnhG family protein YP_005279315.1 3835065 D 595495 CDS YP_005279316.1 378714423 11778344 complement(3835776..3836543) 1 NC_016902.1 PFAM: glutamine amidotransferase class-II; KEGG: sbc:SbBS512_E0220 glutamine amidotransferase, class II; glutamine amidotransferase 3836543 11778344 EKO11_3678 Escherichia coli KO11FL glutamine amidotransferase YP_005279316.1 3835776 R 595495 CDS YP_005279317.1 378714424 11778345 complement(3836749..3837327) 1 NC_016902.1 KEGG: sbc:SbBS512_E0218 phosphoheptose isomerase; TIGRFAM: phosphoheptose isomerase; PFAM: sugar isomerase (SIS); phosphoheptose isomerase 3837327 11778345 EKO11_3679 Escherichia coli KO11FL phosphoheptose isomerase YP_005279317.1 3836749 R 595495 CDS YP_005279318.1 378714425 11779711 3837489..3840011 1 NC_016902.1 KEGG: eoh:ECO103_0237 acyl-CoA dehydrogenase; manually curated; PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain-containing protein; hypothetical protein 3840011 11779711 EKO11_3680 Escherichia coli KO11FL hypothetical protein YP_005279318.1 3837489 D 595495 CDS YP_005279319.1 378714426 11778346 complement(3840054..3840527) 1 NC_016902.1 KEGG: sbc:SbBS512_E0216 C-lysozyme inhibitor; manually curated; PFAM: Inhibitor of vertebrate lysozyme; lysozyme inhibitor 3840527 11778346 EKO11_3681 Escherichia coli KO11FL lysozyme inhibitor YP_005279319.1 3840054 R 595495 CDS YP_005279320.1 378714427 11778347 3840681..3841451 1 NC_016902.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sdy:SDY_0245 hypothetical protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3841451 11778347 EKO11_3682 Escherichia coli KO11FL nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_005279320.1 3840681 D 595495 CDS YP_005279321.1 378714428 11778348 complement(3841493..3842629) 1 NC_016902.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 putative receptor; transposase IS4 family protein 3842629 11778348 EKO11_3683 Escherichia coli KO11FL transposase IS4 family protein YP_005279321.1 3841493 R 595495 CDS YP_005279322.1 378714429 11779712 complement(3843499..3843936) 1 NC_016902.1 KEGG: mmz:MmarC7_0114 TPR repeat-containing protein; hypothetical protein 3843936 11779712 EKO11_3685 Escherichia coli KO11FL hypothetical protein YP_005279322.1 3843499 R 595495 CDS YP_005279323.1 378714430 11778350 complement(3843896..3847945) 1 NC_016902.1 KEGG: etw:ECSP_0241 hypothetical protein; TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein 3847945 11778350 EKO11_3686 Escherichia coli KO11FL YD repeat protein YP_005279323.1 3843896 R 595495 CDS YP_005279324.1 378714431 11778351 complement(3848021..3850162) 1 NC_016902.1 TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; KEGG: eoh:ECO103_0230 VgrG protein; ImpA family type VI secretion-associated protein 3850162 11778351 EKO11_3687 Escherichia coli KO11FL ImpA family type VI secretion-associated protein YP_005279324.1 3848021 R 595495 CDS YP_005279325.1 378714432 11778352 complement(3850372..3850890) 1 NC_016902.1 KEGG: efe:EFER_1977 hypothetical protein; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; type VI secretion system effector 3850890 11778352 EKO11_3688 Escherichia coli KO11FL type VI secretion system effector YP_005279325.1 3850372 R 595495 CDS YP_005279326.1 378714433 11778353 3851588..3852088 1 NC_016902.1 KEGG: ssn:SSON_0254 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Uncharacterised conserved protein UCP028301; type VI secretion protein 3852088 11778353 EKO11_3689 Escherichia coli KO11FL type VI secretion protein YP_005279326.1 3851588 D 595495 CDS YP_005279327.1 378714434 11779713 3852123..3852347 1 NC_016902.1 KEGG: ssn:SSON_0253 hypothetical protein; hypothetical protein 3852347 11779713 EKO11_3690 Escherichia coli KO11FL hypothetical protein YP_005279327.1 3852123 D 595495 CDS YP_005279328.1 378714435 11778354 3852398..3853873 1 NC_016902.1 KEGG: eoi:ECO111_0232 hypothetical protein; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; type VI secretion protein EvpB 3853873 11778354 EKO11_3691 Escherichia coli KO11FL type VI secretion protein EvpB YP_005279328.1 3852398 D 595495 CDS YP_005279329.1 378714436 11779714 3853880..3854293 1 NC_016902.1 KEGG: eok:G2583_0237 hypothetical protein; TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; type VI secretion system lysozyme-like protein 3854293 11779714 EKO11_3692 Escherichia coli KO11FL type VI secretion system lysozyme-like protein YP_005279329.1 3853880 D 595495 CDS YP_005279330.1 378714437 11778355 3854297..3856147 1 NC_016902.1 KEGG: eok:G2583_0236 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; type VI secretion protein 3856147 11778355 EKO11_3693 Escherichia coli KO11FL type VI secretion protein YP_005279330.1 3854297 D 595495 CDS YP_005279331.1 378714438 11778356 3856111..3857193 1 NC_016902.1 KEGG: eoh:ECO103_0223 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; type VI secretion protein 3857193 11778356 EKO11_3694 Escherichia coli KO11FL type VI secretion protein YP_005279331.1 3856111 D 595495 CDS YP_005279332.1 378714439 11778357 3857218..3858498 1 NC_016902.1 TIGRFAM: type VI secretion system FHA domain protein; KEGG: eoh:ECO103_0222 hypothetical protein; putative FHA domain-containing protein 3858498 11778357 EKO11_3695 Escherichia coli KO11FL putative FHA domain-containing protein YP_005279332.1 3857218 D 595495 CDS YP_005279333.1 378714440 11778358 3858495..3859019 1 NC_016902.1 TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: eoh:ECO103_0221 putative lipoprotein; type VI secretion lipoprotein 3859019 11778358 EKO11_3696 Escherichia coli KO11FL type VI secretion lipoprotein YP_005279333.1 3858495 D 595495 CDS YP_005279334.1 378714441 11779715 3859022..3860353 1 NC_016902.1 KEGG: eoi:ECO111_0225 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; type VI secretion protein 3860353 11779715 EKO11_3697 Escherichia coli KO11FL type VI secretion protein YP_005279334.1 3859022 D 595495 CDS YP_005279335.1 378714442 11778359 3860358..3861119 1 NC_016902.1 KEGG: eoj:ECO26_0225 hypothetical protein; TIGRFAM: type IV / VI secretion system protein, DotU family; PFAM: Type IV / VI secretion system, DotU; DotU family type IV / VI secretion system protein 3861119 11778359 EKO11_3698 Escherichia coli KO11FL DotU family type IV / VI secretion system protein YP_005279335.1 3860358 D 595495 CDS YP_005279336.1 378714443 11778360 3861128..3863935 1 NC_016902.1 TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: eoi:ECO111_0223 putative ATP-dependent Clp proteinase ATP-binding chain; SMART: AAA ATPase; type VI secretion ATPase, ClpV1 family 3863935 11778360 EKO11_3699 Escherichia coli KO11FL type VI secretion ATPase, ClpV1 family YP_005279336.1 3861128 D 595495 CDS YP_005279337.1 378714444 11778361 3863932..3864675 1 NC_016902.1 TIGRFAM: type VI secretion-associated protein, VC_A0118 family; KEGG: eoi:ECO111_0222 hypothetical protein; type VI secretion-associated protein 3864675 11778361 EKO11_3700 Escherichia coli KO11FL type VI secretion-associated protein YP_005279337.1 3863932 D 595495 CDS YP_005279338.1 378714445 11778362 3864680..3866092 1 NC_016902.1 KEGG: eoh:ECO103_0216 hypothetical protein; TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; type VI secretion-associated protein 3866092 11778362 EKO11_3701 Escherichia coli KO11FL type VI secretion-associated protein YP_005279338.1 3864680 D 595495 CDS YP_005279339.1 378714446 11778363 3866111..3869635 1 NC_016902.1 KEGG: eoj:ECO26_0220 IcmF-like protein; TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; type VI secretion protein IcmF 3869635 11778363 EKO11_3702 Escherichia coli KO11FL type VI secretion protein IcmF YP_005279339.1 3866111 D 595495 CDS YP_005279340.1 378714447 11778364 3869646..3870998 1 NC_016902.1 PFAM: ImpA domain protein; KEGG: eoh:ECO103_0214 hypothetical protein; ImpA domain-containing protein 3870998 11778364 EKO11_3703 Escherichia coli KO11FL ImpA domain-containing protein YP_005279340.1 3869646 D 595495 CDS YP_005279341.1 378714448 11778365 3871022..3871504 1 NC_016902.1 KEGG: ssn:SSON_0233 Hcp-like protein; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; type VI secretion system effector 3871504 11778365 EKO11_3704 Escherichia coli KO11FL type VI secretion system effector YP_005279341.1 3871022 D 595495 CDS YP_005279342.1 378714449 11778366 3871548..3872462 1 NC_016902.1 KEGG: eoh:ECO103_0212 hypothetical protein; hypothetical protein 3872462 11778366 EKO11_3705 Escherichia coli KO11FL hypothetical protein YP_005279342.1 3871548 D 595495 CDS YP_005279343.1 378714450 11778367 3872472..3872951 1 NC_016902.1 KEGG: eoh:ECO103_0211 hypothetical protein; hypothetical protein 3872951 11778367 EKO11_3706 Escherichia coli KO11FL hypothetical protein YP_005279343.1 3872472 D 595495 CDS YP_005279344.1 378714451 11778368 complement(3873088..3873873) 1 NC_016902.1 KEGG: eoh:ECO103_0210 putative aminopeptidase; putative aminopeptidase 3873873 11778368 EKO11_3707 Escherichia coli KO11FL putative aminopeptidase YP_005279344.1 3873088 R 595495 CDS YP_005279345.1 378714452 11779716 complement(3874413..3875153) 1 NC_016902.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: ebd:ECBD_3409 DNA polymerase III subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; DNA polymerase III subunit epsilon 3875153 11779716 EKO11_3708 Escherichia coli KO11FL DNA polymerase III subunit epsilon YP_005279345.1 3874413 R 595495 CDS YP_005279346.1 378714453 11778370 3875209..3875676 1 NC_016902.1 KEGG: sdy:SDY_0233 ribonuclease H; PFAM: ribonuclease H; Ribonuclease H 3875676 11778370 EKO11_3709 Escherichia coli KO11FL Ribonuclease H YP_005279346.1 3875209 D 595495 CDS YP_005279347.1 378714454 11778371 complement(3875673..3876395) 1 NC_016902.1 PFAM: Methyltransferase type 11; KEGG: eoh:ECO103_0207 putative S-adenosyl-L-methionine-dependent methyltransferase; type 11 methyltransferase 3876395 11778371 EKO11_3710 Escherichia coli KO11FL type 11 methyltransferase YP_005279347.1 3875673 R 595495 CDS YP_005279348.1 378714455 11778372 3876429..3877184 1 NC_016902.1 KEGG: eok:G2583_0216 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 3877184 11778372 EKO11_3711 Escherichia coli KO11FL hydroxyacylglutathione hydrolase YP_005279348.1 3876429 D 595495 CDS YP_005279349.1 378714456 11778373 3877256..3878614 1 NC_016902.1 manually curated; PFAM: MLTD_N domain protein; Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; KEGG: ssn:SSON_0225 membrane-bound lytic murein transglycosylase D; SMART: Peptidoglycan-binding LysM; MLTD_N domain-containing protein 3878614 11778373 EKO11_3712 Escherichia coli KO11FL MLTD_N domain-containing protein YP_005279349.1 3877256 D 595495 CDS YP_005279350.1 378714457 11778374 complement(3878662..3879432) 1 NC_016902.1 PFAM: Methyltransferase type 11; KEGG: eoi:ECO111_0207 putative S-adenosyl-L-methionine-dependent methyltransferase; type 11 methyltransferase 3879432 11778374 EKO11_3713 Escherichia coli KO11FL type 11 methyltransferase YP_005279350.1 3878662 R 595495 CDS YP_005279351.1 378714458 11778375 complement(3879510..3880289) 1 NC_016902.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sbc:SbBS512_E0205 hypothetical protein; endonuclease/exonuclease/phosphatase 3880289 11778375 EKO11_3714 Escherichia coli KO11FL endonuclease/exonuclease/phosphatase YP_005279351.1 3879510 R 595495 CDS YP_005279352.1 378714459 11778376 3880551..3881465 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_0222 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 3881465 11778376 EKO11_3715 Escherichia coli KO11FL LysR family transcriptional regulator YP_005279352.1 3880551 D 595495 CDS YP_005279353.1 378714460 11778377 complement(3881462..3882265) 1 NC_016902.1 PFAM: aldo/keto reductase; KEGG: ssn:SSON_0221 2,5-diketo-D-gluconate reductase B; aldo/keto reductase 3882265 11778377 EKO11_3716 Escherichia coli KO11FL aldo/keto reductase YP_005279353.1 3881462 R 595495 CDS YP_005279354.1 378714461 11778384 complement(3888024..3888599) 1 NC_016902.1 KEGG: ssn:SSON_0214 D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; D,D-heptose 1,7-bisphosphate phosphatase 3888599 11778384 EKO11_3717 Escherichia coli KO11FL D,D-heptose 1,7-bisphosphate phosphatase YP_005279354.1 3888024 R 595495 CDS YP_005279355.1 378714462 11778385 3888787..3889818 1 NC_016902.1 TIGRFAM: D-methionine ABC transporter, ATPase subunit; PFAM: ABC transporter related; NIL domain; KEGG: sbc:SbBS512_E0193 DL-methionine transporter ATP-binding subunit; SMART: AAA ATPase; D-methionine ABC transporter ATPase 3889818 11778385 EKO11_3718 Escherichia coli KO11FL D-methionine ABC transporter ATPase YP_005279355.1 3888787 D 595495 CDS YP_005279356.1 378714463 11778386 3889811..3890464 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_0187 DL-methionine transporter permease subunit; binding-protein-dependent transport system inner membrane protein 3890464 11778386 EKO11_3719 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005279356.1 3889811 D 595495 CDS YP_005279357.1 378714464 11779717 3890504..3891319 1 NC_016902.1 KEGG: sbc:SbBS512_E0191 DL-methionine transporter substrate-binding subunit; TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; lipoprotein 3891319 11779717 EKO11_3720 Escherichia coli KO11FL lipoprotein YP_005279357.1 3890504 D 595495 CDS YP_005279358.1 378714465 11778387 3891437..3891841 1 NC_016902.1 KEGG: sdy:SDY_0215 outer membrane lipoprotein; outer membrane lipoprotein 3891841 11778387 EKO11_3721 Escherichia coli KO11FL outer membrane lipoprotein YP_005279358.1 3891437 D 595495 CDS YP_005279359.1 378714466 11778388 3891838..3892545 1 NC_016902.1 PFAM: Uncharacterised protein family UPF0066; KEGG: ssn:SSON_0209 hypothetical protein; hypothetical protein 3892545 11778388 EKO11_3722 Escherichia coli KO11FL hypothetical protein YP_005279359.1 3891838 D 595495 CDS YP_005279360.1 378714467 11778389 3892656..3894374 1 NC_016902.1 KEGG: sbc:SbBS512_E0188 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; prolyl-tRNA synthetase 3894374 11778389 EKO11_3723 Escherichia coli KO11FL prolyl-tRNA synthetase YP_005279360.1 3892656 D 595495 CDS YP_005279361.1 378714468 11778390 3894428..3895252 1 NC_016902.1 KEGG: ebw:BWG_0186 hypothetical protein; hypothetical protein 3895252 11778390 EKO11_3724 Escherichia coli KO11FL hypothetical protein YP_005279361.1 3894428 D 595495 CDS YP_005279362.1 378714469 11779718 complement(3895407..3896117) 1 NC_016902.1 KEGG: ssn:SSON_0206 lipoprotein involved with copper homeostasis and adhesion; lipoprotein involved with copper homeostasis and adhesion 3896117 11779718 EKO11_3725 Escherichia coli KO11FL lipoprotein involved with copper homeostasis and adhesion YP_005279362.1 3895407 R 595495 CDS YP_005279363.1 378714470 11778391 complement(3896131..3896553) 1 NC_016902.1 PFAM: Class I peptide chain release factor; KEGG: sbc:SbBS512_E0185 peptidyl-tRNA hydrolase domain protein; class I peptide chain release factor 3896553 11778391 EKO11_3726 Escherichia coli KO11FL class I peptide chain release factor YP_005279363.1 3896131 R 595495 CDS YP_005279364.1 378714471 11778392 complement(3896550..3897095) 1 NC_016902.1 PFAM: YaeQ family protein; KEGG: sbc:SbBS512_E0184 hypothetical protein; YaeQ family protein 3897095 11778392 EKO11_3727 Escherichia coli KO11FL YaeQ family protein YP_005279364.1 3896550 R 595495 CDS YP_005279365.1 378714472 11778393 3897261..3897461 1 NC_016902.1 PFAM: protein of unknown function UPF0253; KEGG: sdy:SDY_0208 hypothetical protein; hypothetical protein 3897461 11778393 EKO11_3728 Escherichia coli KO11FL hypothetical protein YP_005279365.1 3897261 D 595495 CDS YP_005279366.1 378714473 11778394 3897448..3897708 1 NC_016902.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: sdy:SDY_0207 Rho-binding antiterminator; transcriptional antiterminator Rof 3897708 11778394 EKO11_3729 Escherichia coli KO11FL transcriptional antiterminator Rof YP_005279366.1 3897448 D 595495 CDS YP_005279367.1 378714474 11779719 complement(3897757..3899055) 1 NC_016902.1 KEGG: sbc:SbBS512_E0181 tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; tRNA(Ile)-lysidine synthetase 3899055 11779719 EKO11_3730 Escherichia coli KO11FL tRNA(Ile)-lysidine synthetase YP_005279367.1 3897757 R 595495 CDS YP_005279368.1 378714475 11778395 complement(3899120..3899509) 1 NC_016902.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sbc:SbBS512_E0180 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3899509 11778395 EKO11_3731 Escherichia coli KO11FL Glyoxalase/bleomycin resistance protein/dioxygenase YP_005279368.1 3899120 R 595495 CDS YP_005279369.1 378714476 11779720 complement(3899566..3901707) 1 NC_016902.1 KEGG: eoi:ECO111_0187 lysine decarboxylase 2, constitutive; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; lysine decarboxylase 3901707 11779720 EKO11_3732 Escherichia coli KO11FL lysine decarboxylase YP_005279369.1 3899566 R 595495 CDS YP_005279370.1 378714477 11778396 complement(3901806..3902765) 1 NC_016902.1 KEGG: sdy:SDY_0201 acetyl-CoA carboxylase carboxyltransferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 3902765 11778396 EKO11_3733 Escherichia coli KO11FL acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_005279370.1 3901806 R 595495 CDS YP_005279371.1 378714478 11778397 complement(3902778..3906260) 1 NC_016902.1 SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: eoh:ECO103_0182 DNA polymerase III subunit alpha; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III subunit alpha 3906260 11778397 EKO11_3734 Escherichia coli KO11FL DNA polymerase III subunit alpha YP_005279371.1 3902778 R 595495 CDS YP_005279372.1 378714479 11778398 complement(3906297..3906893) 1 NC_016902.1 KEGG: ssn:SSON_0195 ribonuclease HII; PFAM: ribonuclease HII/HIII; Ribonuclease H 3906893 11778398 EKO11_3735 Escherichia coli KO11FL Ribonuclease H YP_005279372.1 3906297 R 595495 CDS YP_005279373.1 378714480 11778399 complement(3906890..3908038) 1 NC_016902.1 TIGRFAM: lipid-A-disaccharide synthase; KEGG: eoh:ECO103_0180 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 3908038 11778399 EKO11_3736 Escherichia coli KO11FL lipid-A-disaccharide synthase YP_005279373.1 3906890 R 595495 CDS YP_005279374.1 378714481 11779721 complement(3908038..3908826) 1 NC_016902.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: sdy:SDY_0197 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase 3908826 11779721 EKO11_3737 Escherichia coli KO11FL acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase YP_005279374.1 3908038 R 595495 CDS YP_005279375.1 378714482 11778400 complement(3908830..3909285) 1 NC_016902.1 KEGG: sfv:SFV_0163 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 3909285 11778400 EKO11_3738 Escherichia coli KO11FL beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_005279375.1 3908830 R 595495 CDS YP_005279376.1 378714483 11778401 complement(3909390..3910415) 1 NC_016902.1 KEGG: sdy:SDY_0195 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 3910415 11778401 EKO11_3739 Escherichia coli KO11FL UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_005279376.1 3909390 R 595495 CDS YP_005279377.1 378714484 11778402 complement(3910419..3910904) 1 NC_016902.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: sdy:SDY_0194 periplasmic chaperone; outer membrane chaperone Skp 3910904 11778402 EKO11_3740 Escherichia coli KO11FL outer membrane chaperone Skp YP_005279377.1 3910419 R 595495 CDS YP_005279378.1 378714485 11778403 complement(3911026..3913458) 1 NC_016902.1 KEGG: sbc:SbBS512_E0170 outer membrane protein assembly factor YaeT; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; outer membrane protein assembly complex, YaeT protein 3913458 11778403 EKO11_3741 Escherichia coli KO11FL outer membrane protein assembly complex, YaeT protein YP_005279378.1 3911026 R 595495 CDS YP_005279379.1 378714486 11778404 complement(3913488..3914840) 1 NC_016902.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: sfv:SFV_0159 zinc metallopeptidase RseP; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease 3914840 11778404 EKO11_3742 Escherichia coli KO11FL membrane-associated zinc metalloprotease YP_005279379.1 3913488 R 595495 CDS YP_005279380.1 378714487 11778405 complement(3914852..3915709) 1 NC_016902.1 KEGG: sbc:SbBS512_E0168 CDP-diglyceride synthase; manually curated; PFAM: phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3915709 11778405 EKO11_3743 Escherichia coli KO11FL phosphatidate cytidylyltransferase YP_005279380.1 3914852 R 595495 CDS YP_005279381.1 378714488 11778406 complement(3915722..3916480) 1 NC_016902.1 TIGRFAM: undecaprenyl diphosphate synthase; KEGG: sdy:SDY_0190 undecaprenyl pyrophosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 3916480 11778406 EKO11_3744 Escherichia coli KO11FL undecaprenyl diphosphate synthase YP_005279381.1 3915722 R 595495 CDS YP_005279382.1 378714489 11778407 complement(3916669..3917865) 1 NC_016902.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: sbc:SbBS512_E0166 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3917865 11778407 EKO11_3745 Escherichia coli KO11FL 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_005279382.1 3916669 R 595495 CDS YP_005279383.1 378714490 11778408 complement(3917957..3918514) 1 NC_016902.1 KEGG: sdy:SDY_0188 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; ribosome recycling factor 3918514 11778408 EKO11_3746 Escherichia coli KO11FL ribosome recycling factor YP_005279383.1 3917957 R 595495 CDS YP_005279384.1 378714491 11778409 complement(3918806..3919531) 1 NC_016902.1 KEGG: sbc:SbBS512_E0164 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase 3919531 11778409 EKO11_3747 Escherichia coli KO11FL uridylate kinase YP_005279384.1 3918806 R 595495 CDS YP_005279385.1 378714492 11778410 complement(3919678..3920529) 1 NC_016902.1 KEGG: sdy:SDY_0186 elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; translation elongation factor Ts 3920529 11778410 EKO11_3748 Escherichia coli KO11FL translation elongation factor Ts YP_005279385.1 3919678 R 595495 CDS YP_005279386.1 378714493 11779722 complement(3920787..3921512) 1 NC_016902.1 KEGG: sbc:SbBS512_E0162 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; 30S ribosomal protein S2 3921512 11779722 EKO11_3749 Escherichia coli KO11FL 30S ribosomal protein S2 YP_005279386.1 3920787 R 595495 CDS YP_005279387.1 378714494 11778411 3921880..3922674 1 NC_016902.1 KEGG: sdy:SDY_0184 methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 3922674 11778411 EKO11_3750 Escherichia coli KO11FL methionine aminopeptidase YP_005279387.1 3921880 D 595495 CDS YP_005279388.1 378714495 11778412 3922736..3925408 1 NC_016902.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: eoj:ECO26_0169 PII uridylyl-transferase; PFAM: GlnD PII-uridylyltransferase; DNA polymerase beta domain protein region; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; UTP-GlnB uridylyltransferase, GlnD 3925408 11778412 EKO11_3751 Escherichia coli KO11FL UTP-GlnB uridylyltransferase, GlnD YP_005279388.1 3922736 D 595495 CDS YP_005279389.1 378714496 11778413 3925439..3926263 1 NC_016902.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: ssn:SSON_0178 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3926263 11778413 EKO11_3752 Escherichia coli KO11FL 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_005279389.1 3925439 D 595495 CDS YP_005279390.1 378714497 11778414 3926575..3926961 1 NC_016902.1 KEGG: sdy:SDY_0181 hypothetical protein; hypothetical protein 3926961 11778414 EKO11_3753 Escherichia coli KO11FL hypothetical protein YP_005279390.1 3926575 D 595495 CDS YP_005279391.1 378714498 11778415 complement(3927050..3928207) 1 NC_016902.1 PFAM: sugar diacid recognition domain protein; KEGG: ssn:SSON_0175 carbohydrate diacid transcriptional activator CdaR; transcriptional regulator CdaR 3928207 11778415 EKO11_3754 Escherichia coli KO11FL transcriptional regulator CdaR YP_005279391.1 3927050 R 595495 CDS YP_005279392.1 378714499 11778416 complement(3928362..3929786) 1 NC_016902.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: sbc:SbBS512_E0154 serine endoprotease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 3929786 11778416 EKO11_3755 Escherichia coli KO11FL protease Do YP_005279392.1 3928362 R 595495 CDS YP_005279393.1 378714500 11778417 complement(3929916..3931433) 1 NC_016902.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; KEGG: sfv:SFV_0145 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; deoxyguanosinetriphosphate triphosphohydrolase 3931433 11778417 EKO11_3756 Escherichia coli KO11FL deoxyguanosinetriphosphate triphosphohydrolase YP_005279393.1 3929916 R 595495 CDS YP_005279394.1 378714501 11778418 3931517..3932215 1 NC_016902.1 TIGRFAM: MTA/SAH nucleosidase; KEGG: sdy:SDY_0175 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1; MTA/SAH nucleosidase 3932215 11778418 EKO11_3757 Escherichia coli KO11FL MTA/SAH nucleosidase YP_005279394.1 3931517 D 595495 CDS YP_005279395.1 378714502 11778419 3932208..3933008 1 NC_016902.1 PFAM: periplasmic binding protein; KEGG: ssn:SSON_0170 vitamin B12-transporter protein BtuF; periplasmic binding protein 3933008 11778419 EKO11_3758 Escherichia coli KO11FL periplasmic binding protein YP_005279395.1 3932208 D 595495 CDS YP_005279396.1 378714503 11778420 3933046..3933669 1 NC_016902.1 PFAM: Uncharacterised protein family UPF0126; KEGG: sbc:SbBS512_E0149 hypothetical protein; hypothetical protein 3933669 11778420 EKO11_3759 Escherichia coli KO11FL hypothetical protein YP_005279396.1 3933046 D 595495 CDS YP_005279397.1 378714504 11779723 complement(3933716..3934060) 1 NC_016902.1 KEGG: sdy:SDY_0172 iron-sulfur cluster insertion protein ErpA; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly accessory protein 3934060 11779723 EKO11_3760 Escherichia coli KO11FL iron-sulfur cluster assembly accessory protein YP_005279397.1 3933716 R 595495 CDS YP_005279398.1 378714505 11778421 complement(3934142..3935563) 1 NC_016902.1 PFAM: Cl- channel voltage-gated family protein; KEGG: ssn:SSON_0167 chloride channel protein; Cl- channel voltage-gated family protein 3935563 11778421 EKO11_3761 Escherichia coli KO11FL Cl- channel voltage-gated family protein YP_005279398.1 3934142 R 595495 CDS YP_005279399.1 378714506 11778422 3935788..3937068 1 NC_016902.1 KEGG: ebd:ECBD_3464 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; glutamate-1-semialdehyde-2,1-aminomutase 3937068 11778422 EKO11_3762 Escherichia coli KO11FL glutamate-1-semialdehyde-2,1-aminomutase YP_005279399.1 3935788 D 595495 CDS YP_005279400.1 378714507 11778423 complement(3937103..3939085) 1 NC_016902.1 PFAM: transport system permease protein; KEGG: eoj:ECO26_0156 iron-hydroxamate transporter permease subunit; transport system permease 3939085 11778423 EKO11_3763 Escherichia coli KO11FL transport system permease YP_005279400.1 3937103 R 595495 CDS YP_005279401.1 378714508 11778424 complement(3939082..3939972) 1 NC_016902.1 PFAM: periplasmic binding protein; KEGG: eoh:ECO103_0152 iron-hydroxamate transporter substrate-binding subunit; periplasmic binding protein 3939972 11778424 EKO11_3764 Escherichia coli KO11FL periplasmic binding protein YP_005279401.1 3939082 R 595495 CDS YP_005279402.1 378714509 11778425 complement(3939972..3940769) 1 NC_016902.1 KEGG: ebw:BWG_0144 iron-hydroxamate transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3940769 11778425 EKO11_3765 Escherichia coli KO11FL ABC transporter YP_005279402.1 3939972 R 595495 CDS YP_005279403.1 378714510 11778426 complement(3940820..3943063) 1 NC_016902.1 KEGG: eoh:ECO103_0150 ferrichrome outer membrane transporter; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; TonB-dependent siderophore receptor 3943063 11778426 EKO11_3766 Escherichia coli KO11FL TonB-dependent siderophore receptor YP_005279403.1 3940820 R 595495 CDS YP_005279404.1 378714511 11778427 complement(3943283..3945817) 1 NC_016902.1 TIGRFAM: penicillin-binding protein 1B; KEGG: sfv:SFV_0134 penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B 3945817 11778427 EKO11_3767 Escherichia coli KO11FL penicillin-binding protein 1B YP_005279404.1 3943283 R 595495 CDS YP_005279405.1 378714512 11779724 complement(3946013..3948442) 1 NC_016902.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; helicase-associated domain protein; KEGG: ebw:BWG_0141 ATP-dependent RNA helicase HrpB; SMART: DEAD-like helicase ; helicase domain protein; ATP-dependent helicase HrpB 3948442 11779724 EKO11_3768 Escherichia coli KO11FL ATP-dependent helicase HrpB YP_005279405.1 3946013 R 595495 CDS YP_005279406.1 378714513 11779725 3948516..3949046 1 NC_016902.1 KEGG: ssn:SSON_0159 hypothetical protein; TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; 2'-5' RNA ligase 3949046 11779725 EKO11_3769 Escherichia coli KO11FL 2'-5' RNA ligase YP_005279406.1 3948516 D 595495 CDS YP_005279407.1 378714514 11778428 3949061..3949765 1 NC_016902.1 KEGG: eok:G2583_0150 sugar fermentation stimulation protein A; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; sugar fermentation stimulation protein 3949765 11778428 EKO11_3770 Escherichia coli KO11FL sugar fermentation stimulation protein YP_005279407.1 3949061 D 595495 CDS YP_005279408.1 378714515 11778429 3949943..3950398 1 NC_016902.1 TIGRFAM: RNA polymerase-binding protein DksA; KEGG: ctu:Ctu_07760 RNA polymerase-binding transcription factor; TraR/DksA family transcriptional regulator 3950398 11778429 EKO11_3771 Escherichia coli KO11FL TraR/DksA family transcriptional regulator YP_005279408.1 3949943 D 595495 CDS YP_005279409.1 378714516 11778430 3950435..3951361 1 NC_016902.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: eoi:ECO111_0146 glutamyl-Q tRNA(Asp) synthetase; glutamyl/glutaminyl-tRNA synthetase 3951361 11778430 EKO11_3772 Escherichia coli KO11FL glutamyl/glutaminyl-tRNA synthetase YP_005279409.1 3950435 D 595495 CDS YP_005279410.1 378714517 11778431 3951421..3952818 1 NC_016902.1 manually curated; TIGRFAM: poly(A) polymerase; KEGG: sbo:SBO_0132 poly(A) polymerase I; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 3952818 11778431 EKO11_3773 Escherichia coli KO11FL poly(A) polymerase YP_005279410.1 3951421 D 595495 CDS YP_005279411.1 378714518 11779726 3952815..3953294 1 NC_016902.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: ebd:ECBD_3477 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3953294 11779726 EKO11_3774 Escherichia coli KO11FL 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_005279411.1 3952815 D 595495 CDS YP_005279412.1 378714519 11778432 3953664..3954248 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ssn:SSON_0153 putative fimbrial-like protein; fimbrial protein domain-containing protein 3954248 11778432 EKO11_3775 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005279412.1 3953664 D 595495 CDS YP_005279413.1 378714520 11778433 3954353..3955093 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ebd:ECBD_3479 putative chaperone protein EcpD; Pili assembly chaperone, N-terminal protein 3955093 11778433 EKO11_3776 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005279413.1 3954353 D 595495 CDS YP_005279414.1 378714521 11778434 3955128..3957728 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoj:ECO26_0142 putative outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 3957728 11778434 EKO11_3777 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005279414.1 3955128 D 595495 CDS YP_005279415.1 378714522 11778435 3957745..3958314 1 NC_016902.1 KEGG: ebd:ECBD_3481 putative fimbrial-like adhesin exported protein; putative fimbrial-like adhesin exported protein 3958314 11778435 EKO11_3778 Escherichia coli KO11FL putative fimbrial-like adhesin exported protein YP_005279415.1 3957745 D 595495 CDS YP_005279416.1 378714523 11778436 3958329..3958931 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ebd:ECBD_3482 fimbrial protein; fimbrial protein domain-containing protein 3958931 11778436 EKO11_3779 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005279416.1 3958329 D 595495 CDS YP_005279417.1 378714524 11778437 3958958..3959554 1 NC_016902.1 KEGG: ssn:SSON_0145 putative fimbrial protein; putative fimbrial protein 3959554 11778437 EKO11_3780 Escherichia coli KO11FL putative fimbrial protein YP_005279417.1 3958958 D 595495 CDS YP_005279418.1 378714525 11778438 3959607..3960881 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ebd:ECBD_3484 putative fimbrial-like adhesin protein; fimbrial protein domain-containing protein 3960881 11778438 EKO11_3781 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005279418.1 3959607 D 595495 CDS YP_005279419.1 378714526 11778439 3960994..3961788 1 NC_016902.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: eoh:ECO103_0134 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3961788 11778439 EKO11_3782 Escherichia coli KO11FL 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_005279419.1 3960994 D 595495 CDS YP_005279420.1 378714527 11778440 3961800..3962651 1 NC_016902.1 KEGG: eoh:ECO103_0133 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 3962651 11778440 EKO11_3783 Escherichia coli KO11FL pantoate--beta-alanine ligase YP_005279420.1 3961800 D 595495 CDS YP_005279421.1 378714528 11778441 complement(3962725..3963684) 1 NC_016902.1 PFAM: transposase YhgA family protein; KEGG: ssn:SSON_0140 hypothetical protein; transposase YhgA family protein 3963684 11778441 EKO11_3784 Escherichia coli KO11FL transposase YhgA family protein YP_005279421.1 3962725 R 595495 CDS YP_005279422.1 378714529 11778442 3963901..3964281 1 NC_016902.1 TIGRFAM: aspartate 1-decarboxylase; KEGG: sdy:SDY_0041 aspartate alpha-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase 3964281 11778442 EKO11_3785 Escherichia coli KO11FL aspartate 1-decarboxylase YP_005279422.1 3963901 D 595495 CDS YP_005279423.1 378714530 11779727 complement(3964285..3965514) 1 NC_016902.1 PFAM: polysaccharide deacetylase; KEGG: eoh:ECO103_0130 putative polysaccharide deacetylase lipoprotein; polysaccharide deacetylase 3965514 11779727 EKO11_3786 Escherichia coli KO11FL polysaccharide deacetylase YP_005279423.1 3964285 R 595495 CDS YP_005279424.1 378714531 11778443 complement(3965578..3966018) 1 NC_016902.1 PFAM: PTS system fructose subfamily IIA component; KEGG: eoi:ECO111_0130 putative PTS enzyme IIA; PTS system fructose subfamily transporter subunit IIA 3966018 11778443 EKO11_3787 Escherichia coli KO11FL PTS system fructose subfamily transporter subunit IIA YP_005279424.1 3965578 R 595495 CDS YP_005279425.1 378714532 11778444 complement(3966123..3966893) 1 NC_016902.1 PFAM: ABC-2 type transporter; KEGG: sdy:SDY_0037 hypothetical protein; ABC transporter 3966893 11778444 EKO11_3788 Escherichia coli KO11FL ABC transporter YP_005279425.1 3966123 R 595495 CDS YP_005279426.1 378714533 11778445 complement(3966890..3967816) 1 NC_016902.1 KEGG: ssn:SSON_0135 putative ATP-binding component of a transport system; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3967816 11778445 EKO11_3789 Escherichia coli KO11FL ABC transporter YP_005279426.1 3966890 R 595495 CDS YP_005279427.1 378714534 11778446 3967925..3968587 1 NC_016902.1 KEGG: ssn:SSON_0134 carbonic anhydrase; PFAM: carbonic anhydrase; carbonate dehydratase 3968587 11778446 EKO11_3790 Escherichia coli KO11FL carbonate dehydratase YP_005279427.1 3967925 D 595495 CDS YP_005279428.1 378714535 11778447 complement(3968628..3969164) 1 NC_016902.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: sdy:SDY_0034 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 3969164 11778447 EKO11_3791 Escherichia coli KO11FL hypoxanthine phosphoribosyltransferase YP_005279428.1 3968628 R 595495 CDS YP_005279429.1 378714536 11778448 3969370..3971760 1 NC_016902.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; KEGG: ebw:BWG_0117 glucose dehydrogenase; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone repeat-containing protein; membrane-bound PQQ-dependent dehydrogenase 3971760 11778448 EKO11_3792 Escherichia coli KO11FL membrane-bound PQQ-dependent dehydrogenase YP_005279429.1 3969370 D 595495 CDS YP_005279430.1 378714537 11778449 complement(3971807..3973357) 1 NC_016902.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: ebw:BWG_0116 multicopper oxidase; multicopper oxidase type 3 3973357 11778449 EKO11_3793 Escherichia coli KO11FL multicopper oxidase type 3 YP_005279430.1 3971807 R 595495 CDS YP_005279431.1 378714538 11778450 3973523..3973870 1 NC_016902.1 KEGG: sdy:SDY_0029 hypothetical protein; hypothetical protein 3973870 11778450 EKO11_3794 Escherichia coli KO11FL hypothetical protein YP_005279431.1 3973523 D 595495 CDS YP_005279432.1 378714539 11778451 3973976..3974842 1 NC_016902.1 KEGG: ebd:ECBD_3498 spermidine synthase; TIGRFAM: spermidine synthase; PFAM: Spermine synthase; spermidine synthase 3974842 11778451 EKO11_3795 Escherichia coli KO11FL spermidine synthase YP_005279432.1 3973976 D 595495 CDS YP_005279433.1 378714540 11779728 3974858..3975652 1 NC_016902.1 TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; KEGG: sbc:SbBS512_E0113 S-adenosylmethionine decarboxylase; PFAM: S-adenosylmethionine decarboxylase related; S-adenosylmethionine decarboxylase 3975652 11779728 EKO11_3796 Escherichia coli KO11FL S-adenosylmethionine decarboxylase YP_005279433.1 3974858 D 595495 CDS YP_005279434.1 378714541 11779729 complement(3975690..3976052) 1 NC_016902.1 PFAM: Uncharacterised conserved protein UCP006287; KEGG: sdy:SDY_0026 hypothetical protein; hypothetical protein 3976052 11779729 EKO11_3797 Escherichia coli KO11FL hypothetical protein YP_005279434.1 3975690 R 595495 CDS YP_005279435.1 378714542 11778452 complement(3976228..3978825) 1 NC_016902.1 KEGG: sbo:SBO_0107 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: aconitate hydratase 2; PFAM: Aconitase B; aconitate hydratase domain-containing protein; aconitate hydratase 2 3978825 11778452 EKO11_3798 Escherichia coli KO11FL aconitate hydratase 2 YP_005279435.1 3976228 R 595495 CDS YP_005279436.1 378714543 11778453 3979180..3980937 1 NC_016902.1 KEGG: ssn:SSON_0125 hypothetical protein; hypothetical protein 3980937 11778453 EKO11_3799 Escherichia coli KO11FL hypothetical protein YP_005279436.1 3979180 D 595495 CDS YP_005279437.1 378714544 11778454 complement(3981008..3982432) 1 NC_016902.1 KEGG: sbc:SbBS512_E0109 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 3982432 11778454 EKO11_3800 Escherichia coli KO11FL dihydrolipoamide dehydrogenase YP_005279437.1 3981008 R 595495 CDS YP_005279438.1 378714545 11778455 complement(3982757..3984649) 1 NC_016902.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; KEGG: sbc:SbBS512_E0108 dihydrolipoamide acetyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 3984649 11778455 EKO11_3801 Escherichia coli KO11FL pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_005279438.1 3982757 R 595495 CDS YP_005279439.1 378714546 11778456 complement(3984664..3987327) 1 NC_016902.1 KEGG: eok:G2583_0118 pyruvate dehydrogenase E1 component; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: Transketolase domain-containing protein; 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 3987327 11778456 EKO11_3802 Escherichia coli KO11FL 2-oxo-acid dehydrogenase E1 subunit, homodimeric type YP_005279439.1 3984664 R 595495 CDS YP_005279440.1 378714547 11778457 complement(3987488..3988252) 1 NC_016902.1 KEGG: sbc:SbBS512_E0106 transcriptional regulator PdhR; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; regulatory protein GntR HTH 3988252 11778457 EKO11_3803 Escherichia coli KO11FL regulatory protein GntR HTH YP_005279440.1 3987488 R 595495 CDS YP_005279441.1 378714548 11778458 3988796..3990166 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: efe:EFER_0132 aromatic amino acid transporter; amino acid permease 3990166 11778458 EKO11_3804 Escherichia coli KO11FL amino acid permease YP_005279441.1 3988796 D 595495 CDS YP_005279442.1 378714549 11778459 complement(3990209..3991063) 1 NC_016902.1 KEGG: ssn:SSON_0119 regulatory protein AmpE; signaling modulator of AmpD, AmpE 3991063 11778459 EKO11_3805 Escherichia coli KO11FL signaling modulator of AmpD, AmpE YP_005279442.1 3990209 R 595495 CDS YP_005279443.1 378714550 11778460 complement(3991060..3991611) 1 NC_016902.1 KEGG: ebd:ECBD_3509 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 3991611 11778460 EKO11_3806 Escherichia coli KO11FL N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_005279443.1 3991060 R 595495 CDS YP_005279444.1 378714551 11778461 3991699..3992592 1 NC_016902.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: ebd:ECBD_3510 quinolinate phosphoribosyltransferase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 3992592 11778461 EKO11_3807 Escherichia coli KO11FL nicotinate-nucleotide pyrophosphorylase YP_005279444.1 3991699 D 595495 CDS YP_005279445.1 378714552 11779730 3992795..3993235 1 NC_016902.1 KEGG: ebd:ECBD_3511 putative major pilin subunit; putative major pilin subunit 3993235 11779730 EKO11_3808 Escherichia coli KO11FL putative major pilin subunit YP_005279445.1 3992795 D 595495 CDS YP_005279446.1 378714553 11779731 3993245..3994630 1 NC_016902.1 PFAM: type II secretion system protein E; KEGG: ebd:ECBD_3512 hypothetical protein; type II secretion system protein E 3994630 11779731 EKO11_3809 Escherichia coli KO11FL type II secretion system protein E YP_005279446.1 3993245 D 595495 CDS YP_005279447.1 378714554 11778462 3994620..3995822 1 NC_016902.1 PFAM: Type II secretion system F domain; KEGG: sbc:SbBS512_E0098 type IV pilin biogenesis protein; type II secretion system F domain-containing protein 3995822 11778462 EKO11_3810 Escherichia coli KO11FL type II secretion system F domain-containing protein YP_005279447.1 3994620 D 595495 CDS YP_005279448.1 378714555 11778463 complement(3995857..3996900) 1 NC_016902.1 KEGG: ssn:SSON_0112 guanosine 5'-monophosphate oxidoreductase; TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; guanosine monophosphate reductase 3996900 11778463 EKO11_3811 Escherichia coli KO11FL guanosine monophosphate reductase YP_005279448.1 3995857 R 595495 CDS YP_005279449.1 378714556 11778464 3997125..3997745 1 NC_016902.1 TIGRFAM: dephospho-CoA kinase; KEGG: sdy:SDY_0133 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 3997745 11778464 EKO11_3812 Escherichia coli KO11FL dephospho-CoA kinase YP_005279449.1 3997125 D 595495 CDS YP_005279450.1 378714557 11778465 3997745..3998488 1 NC_016902.1 PFAM: protein of unknown function DUF1342; KEGG: ssn:SSON_0110 hypothetical protein; hypothetical protein 3998488 11778465 EKO11_3813 Escherichia coli KO11FL hypothetical protein YP_005279450.1 3997745 D 595495 CDS YP_005279451.1 378714558 11778466 3998498..3998695 1 NC_016902.1 PFAM: protein of unknown function DUF329; KEGG: sdy:SDY_0131 zinc-binding protein; hypothetical protein 3998695 11778466 EKO11_3814 Escherichia coli KO11FL hypothetical protein YP_005279451.1 3998498 D 595495 CDS YP_005279452.1 378714559 11778467 complement(3998795..3999184) 1 NC_016902.1 KEGG: ssn:SSON_0107 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; mutator MutT protein 3999184 11778467 EKO11_3815 Escherichia coli KO11FL mutator MutT protein YP_005279452.1 3998795 R 595495 CDS YP_005279453.1 378714560 11778468 complement(3999244..4001949) 1 NC_016902.1 KEGG: sbc:SbBS512_E0092 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein; Preprotein translocase subunit SecA 4001949 11778468 EKO11_3816 Escherichia coli KO11FL Preprotein translocase subunit SecA YP_005279453.1 3999244 R 595495 CDS YP_005279454.1 378714561 11778469 complement(4002011..4002694) 1 NC_016902.1 KEGG: eok:G2583_0101 secretion monitor protein; manually curated; PFAM: secretion monitor family proten; secretion monitor family proten 4002694 11778469 EKO11_3817 Escherichia coli KO11FL secretion monitor family proten YP_005279454.1 4002011 R 595495 CDS YP_005279455.1 378714562 11778470 complement(4002753..4003670) 1 NC_016902.1 KEGG: sdy:SDY_0126 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 4003670 11778470 EKO11_3818 Escherichia coli KO11FL UDP-3-0-acyl N-acetylglucosamine deacetylase YP_005279455.1 4002753 R 595495 CDS YP_005279456.1 378714563 11778471 complement(4003771..4004922) 1 NC_016902.1 KEGG: sdy:SDY_0125 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; cell division protein FtsZ 4004922 11778471 EKO11_3819 Escherichia coli KO11FL cell division protein FtsZ YP_005279456.1 4003771 R 595495 CDS YP_005279457.1 378714564 11778472 complement(4004983..4006245) 1 NC_016902.1 KEGG: sdy:SDY_0124 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; cell division protein FtsA 4006245 11778472 EKO11_3820 Escherichia coli KO11FL cell division protein FtsA YP_005279457.1 4004983 R 595495 CDS YP_005279458.1 378714565 11778473 complement(4006242..4007072) 1 NC_016902.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: sbc:SbBS512_E0086 cell division protein FtsQ; cell division protein FtsQ 4007072 11778473 EKO11_3821 Escherichia coli KO11FL cell division protein FtsQ YP_005279458.1 4006242 R 595495 CDS YP_005279459.1 378714566 11778474 complement(4007074..4007994) 1 NC_016902.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: ssn:SSON_0100 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 4007994 11778474 EKO11_3822 Escherichia coli KO11FL D-alanine--D-alanine ligase YP_005279459.1 4007074 R 595495 CDS YP_005279460.1 378714567 11778475 complement(4007987..4009462) 1 NC_016902.1 KEGG: ebd:ECBD_3526 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; UDP-N-acetylmuramate--L-alanine ligase 4009462 11778475 EKO11_3823 Escherichia coli KO11FL UDP-N-acetylmuramate--L-alanine ligase YP_005279460.1 4007987 R 595495 CDS YP_005279461.1 378714568 11778476 complement(4009516..4010583) 1 NC_016902.1 KEGG: sbo:SBO_0078 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 4010583 11778476 EKO11_3824 Escherichia coli KO11FL UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase YP_005279461.1 4009516 R 595495 CDS YP_005279462.1 378714569 11778477 complement(4010580..4011824) 1 NC_016902.1 KEGG: sdy:SDY_0119 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; cell division protein FtsW 4011824 11778477 EKO11_3825 Escherichia coli KO11FL cell division protein FtsW YP_005279462.1 4010580 R 595495 CDS YP_005279463.1 378714570 11778478 complement(4011824..4013140) 1 NC_016902.1 KEGG: sbo:SBO_0076 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramoylalanine--D-glutamate ligase 4013140 11778478 EKO11_3826 Escherichia coli KO11FL UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_005279463.1 4011824 R 595495 CDS YP_005279464.1 378714571 11778479 complement(4013143..4014225) 1 NC_016902.1 KEGG: sbc:SbBS512_E0080 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-N-acetylmuramoyl-pentapeptide- transferase 4014225 11778479 EKO11_3827 Escherichia coli KO11FL phospho-N-acetylmuramoyl-pentapeptide- transferase YP_005279464.1 4013143 R 595495 CDS YP_005279465.1 378714572 11778480 complement(4014219..4015577) 1 NC_016902.1 KEGG: sbc:SbBS512_E0079 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 4015577 11778480 EKO11_3828 Escherichia coli KO11FL UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase YP_005279465.1 4014219 R 595495 CDS YP_005279466.1 378714573 11778481 complement(4015574..4017061) 1 NC_016902.1 KEGG: eoh:ECO103_0087 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramyl tripeptide synthetase 4017061 11778481 EKO11_3829 Escherichia coli KO11FL UDP-N-acetylmuramyl tripeptide synthetase YP_005279466.1 4015574 R 595495 CDS YP_005279467.1 378714574 11778482 complement(4017048..4018814) 1 NC_016902.1 KEGG: sdy:SDY_0114 penicillin-binding protein 3; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; peptidoglycan glycosyltransferase 4018814 11778482 EKO11_3830 Escherichia coli KO11FL peptidoglycan glycosyltransferase YP_005279467.1 4017048 R 595495 CDS YP_005279468.1 378714575 11778483 complement(4018830..4019195) 1 NC_016902.1 KEGG: sdy:SDY_0113 cell division protein FtsL; TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; cell division protein FtsL 4019195 11778483 EKO11_3831 Escherichia coli KO11FL cell division protein FtsL YP_005279468.1 4018830 R 595495 CDS YP_005279469.1 378714576 11778484 complement(4019192..4020133) 1 NC_016902.1 KEGG: sbc:SbBS512_E0075 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW 4020133 11778484 EKO11_3832 Escherichia coli KO11FL S-adenosyl-methyltransferase MraW YP_005279469.1 4019192 R 595495 CDS YP_005279470.1 378714577 11778485 complement(4020135..4020593) 1 NC_016902.1 KEGG: sbc:SbBS512_E0074 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain; MraZ protein 4020593 11778485 EKO11_3833 Escherichia coli KO11FL MraZ protein YP_005279470.1 4020135 R 595495 CDS YP_005279471.1 378714578 11778486 complement(4021195..4022199) 1 NC_016902.1 TIGRFAM: D-fructose-responsive transcription factor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E0073 DNA-binding transcriptional regulator FruR; SMART: regulatory protein LacI; LacI family transcriptional regulator 4022199 11778486 EKO11_3834 Escherichia coli KO11FL LacI family transcriptional regulator YP_005279471.1 4021195 R 595495 CDS YP_005279472.1 378714579 11778487 complement(4022281..4022376) 1 NC_016902.1 manually curated; KEGG: eok:G2583_0083 FruR leader peptide; FruR leader peptide 4022376 11778487 EKO11_3835 Escherichia coli KO11FL FruR leader peptide YP_005279472.1 4022281 R 595495 CDS YP_005279473.1 378714580 11778488 complement(4022379..4022870) 1 NC_016902.1 TIGRFAM: acetolactate synthase, small subunit; KEGG: sfv:SFV_0069 acetolactate synthase 3 regulatory subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; acetolactate synthase small subunit 4022870 11778488 EKO11_3836 Escherichia coli KO11FL acetolactate synthase small subunit YP_005279473.1 4022379 R 595495 CDS YP_005279474.1 378714581 11778489 complement(4022873..4024597) 1 NC_016902.1 KEGG: ssn:SSON_0084 acetolactate synthase 3 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; acetolactate synthase large subunit 4024597 11778489 EKO11_3837 Escherichia coli KO11FL acetolactate synthase large subunit YP_005279474.1 4022873 R 595495 CDS YP_005279475.1 378714582 11778490 complement(4024915..4025859) 1 NC_016902.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_0083 leucine transcriptional activator; LysR family transcriptional regulator 4025859 11778490 EKO11_3838 Escherichia coli KO11FL LysR family transcriptional regulator YP_005279475.1 4024915 R 595495 CDS YP_005279476.1 378714583 11778491 4026698..4028269 1 NC_016902.1 KEGG: sbc:SbBS512_E0068 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; 2-isopropylmalate synthase 4028269 11778491 EKO11_3839 Escherichia coli KO11FL 2-isopropylmalate synthase YP_005279476.1 4026698 D 595495 CDS YP_005279477.1 378714584 11778492 4028269..4029360 1 NC_016902.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: ebd:ECBD_3543 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 4029360 11778492 EKO11_3840 Escherichia coli KO11FL 3-isopropylmalate dehydrogenase YP_005279477.1 4028269 D 595495 CDS YP_005279478.1 378714585 11778493 4029363..4030763 1 NC_016902.1 KEGG: sbc:SbBS512_E0066 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase large subunit 4030763 11778493 EKO11_3841 Escherichia coli KO11FL 3-isopropylmalate dehydratase large subunit YP_005279478.1 4029363 D 595495 CDS YP_005279479.1 378714586 11778494 4030774..4031379 1 NC_016902.1 KEGG: sbc:SbBS512_E0065 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase small subunit 4031379 11778494 EKO11_3842 Escherichia coli KO11FL 3-isopropylmalate dehydratase small subunit YP_005279479.1 4030774 D 595495 CDS YP_005279480.1 378714587 11778495 complement(4031428..4032606) 1 NC_016902.1 KEGG: eoh:ECO103_0072 broad specificity sugar efflux system SetA; TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; sugar efflux transporter 4032606 11778495 EKO11_3843 Escherichia coli KO11FL sugar efflux transporter YP_005279480.1 4031428 R 595495 CDS YP_005279481.1 378714588 11778496 complement(4032708..4032839) 1 NC_016902.1 KEGG: ebd:ECBD_3547 hypothetical protein; hypothetical protein 4032839 11778496 EKO11_3844 Escherichia coli KO11FL hypothetical protein YP_005279481.1 4032708 R 595495 CDS YP_005279482.1 378714589 11778497 4032928..4034583 1 NC_016902.1 PFAM: extracellular solute-binding protein family 5; KEGG: sbc:SbBS512_E0062 transcriptional regulator SgrR; family 5 extracellular solute-binding protein 4034583 11778497 EKO11_3845 Escherichia coli KO11FL family 5 extracellular solute-binding protein YP_005279482.1 4032928 D 595495 CDS YP_005279483.1 378714590 11779732 4034747..4035730 1 NC_016902.1 KEGG: eoh:ECO103_0069 thiamine transporter substrate binding subunit; TIGRFAM: thiamine ABC transporter, periplasmic binding protein; ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1; thiamine ABC transporter, periplasmic binding protein 4035730 11779732 EKO11_3846 Escherichia coli KO11FL thiamine ABC transporter, periplasmic binding protein YP_005279483.1 4034747 D 595495 CDS YP_005279484.1 378714591 11778498 4035706..4037316 1 NC_016902.1 KEGG: sfx:S0064 thiamine transporter membrane protein; TIGRFAM: thiamine ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; thiamine ABC transporter, inner membrane subunit 4037316 11778498 EKO11_3847 Escherichia coli KO11FL thiamine ABC transporter, inner membrane subunit YP_005279484.1 4035706 D 595495 CDS YP_005279485.1 378714592 11778499 4037300..4037998 1 NC_016902.1 TIGRFAM: ABC transporter, ATPase subunit, ThiQ subfamily; PFAM: ABC transporter related; KEGG: ssn:SSON_0072 thiamine transporter ATP-binding subunit; SMART: AAA ATPase; ABC transporter ATPase 4037998 11778499 EKO11_3848 Escherichia coli KO11FL ABC transporter ATPase YP_005279485.1 4037300 D 595495 CDS YP_005279486.1 378714593 11778500 complement(4038100..4038864) 1 NC_016902.1 PFAM: SNARE associated Golgi protein; KEGG: sbo:SBO_0052 hypothetical protein; hypothetical protein 4038864 11778500 EKO11_3849 Escherichia coli KO11FL hypothetical protein YP_005279486.1 4038100 R 595495 CDS YP_005279487.1 378714594 11778501 complement(4038950..4039828) 1 NC_016902.1 KEGG: sbo:SBO_0051 DNA-binding transcriptional regulator AraC; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 4039828 11778501 EKO11_3850 Escherichia coli KO11FL AraC family transcriptional regulator YP_005279487.1 4038950 R 595495 CDS YP_005279488.1 378714595 11779733 4040167..4041867 1 NC_016902.1 KEGG: ebd:ECBD_3554 ribulokinase; TIGRFAM: L-ribulokinase; PFAM: Carbohydrate kinase, FGGY-like; L-ribulokinase 4041867 11779733 EKO11_3851 Escherichia coli KO11FL L-ribulokinase YP_005279488.1 4040167 D 595495 CDS YP_005279489.1 378714596 11778502 4041878..4043380 1 NC_016902.1 KEGG: sbo:SBO_0049 L-arabinose isomerase; PFAM: L-arabinose isomerase; L-arabinose isomerase 4043380 11778502 EKO11_3852 Escherichia coli KO11FL L-arabinose isomerase YP_005279489.1 4041878 D 595495 CDS YP_005279490.1 378714597 11778503 4043549..4044244 1 NC_016902.1 KEGG: ssn:SSON_0067 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; L-ribulose-5-phosphate 4-epimerase 4044244 11778503 EKO11_3853 Escherichia coli KO11FL L-ribulose-5-phosphate 4-epimerase YP_005279490.1 4043549 D 595495 CDS YP_005279491.1 378714598 11778504 4044319..4046670 1 NC_016902.1 KEGG: eoh:ECO103_0061 DNA polymerase II; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; SMART: DNA-directed DNA polymerase B; DNA polymerase B region 4046670 11778504 EKO11_3854 Escherichia coli KO11FL DNA polymerase B region YP_005279491.1 4044319 D 595495 CDS YP_005279492.1 378714599 11778505 4046835..4049741 1 NC_016902.1 KEGG: ebd:ECBD_3558 ATP-dependent helicase HepA; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SNF2-related protein 4049741 11778505 EKO11_3855 Escherichia coli KO11FL SNF2-related protein YP_005279492.1 4046835 D 595495 CDS YP_005279493.1 378714600 11778506 4049753..4050412 1 NC_016902.1 PFAM: pseudouridine synthase; KEGG: sdy:SDY_0082 23S rRNA/tRNA pseudouridine synthase A; pseudouridine synthase 4050412 11778506 EKO11_3856 Escherichia coli KO11FL pseudouridine synthase YP_005279493.1 4049753 D 595495 CDS YP_005279494.1 378714601 11778507 complement(4050529..4051389) 1 NC_016902.1 manually curated; PFAM: heat shock protein DnaJ domain protein; KEGG: sdy:SDY_0080 Dna-J like membrane chaperone protein; SMART: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 4051389 11778507 EKO11_3857 Escherichia coli KO11FL heat shock protein DnaJ domain-containing protein YP_005279494.1 4050529 R 595495 CDS YP_005279495.1 378714602 11778508 4051599..4053953 1 NC_016902.1 PFAM: Organic solvent tolerance protein; OstA family protein; KEGG: ebd:ECBD_3561 organic solvent tolerance protein; organic solvent tolerance protein 4053953 11778508 EKO11_3858 Escherichia coli KO11FL organic solvent tolerance protein YP_005279495.1 4051599 D 595495 CDS YP_005279496.1 378714603 11778509 4054006..4055292 1 NC_016902.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sbo:SBO_0042 peptidyl-prolyl cis-trans isomerase SurA; SurA domain-containing protein 4055292 11778509 EKO11_3859 Escherichia coli KO11FL SurA domain-containing protein YP_005279496.1 4054006 D 595495 CDS YP_005279497.1 378714604 11778510 4055292..4056281 1 NC_016902.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: eok:G2583_0056 4-hydroxythreonine-4-phosphate dehydrogenase (4-(phosphohydroxy)-L-threonine dehydrogenase); PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 4056281 11778510 EKO11_3860 Escherichia coli KO11FL 4-hydroxythreonine-4-phosphate dehydrogenase YP_005279497.1 4055292 D 595495 CDS YP_005279498.1 378714605 11778511 4056278..4057099 1 NC_016902.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: sbo:SBO_0040 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase-like; dimethyladenosine transferase 4057099 11778511 EKO11_3861 Escherichia coli KO11FL dimethyladenosine transferase YP_005279498.1 4056278 D 595495 CDS YP_005279499.1 378714606 11778512 4057102..4057479 1 NC_016902.1 PFAM: ApaG domain protein; KEGG: sdy:SDY_0075 ApaG; ApaG protein 4057479 11778512 EKO11_3862 Escherichia coli KO11FL ApaG protein YP_005279499.1 4057102 D 595495 CDS YP_005279500.1 378714607 11778513 4057486..4058328 1 NC_016902.1 KEGG: sfv:SFV_0043 diadenosine tetraphosphatase; TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); PFAM: metallophosphoesterase; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 4058328 11778513 EKO11_3863 Escherichia coli KO11FL bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YP_005279500.1 4057486 D 595495 CDS YP_005279501.1 378714608 11778514 complement(4058406..4058885) 1 NC_016902.1 manually curated; KEGG: sbc:SbBS512_E0042 dihydrofolate reductase; PFAM: dihydrofolate reductase region; Dihydrofolate reductase 4058885 11778514 EKO11_3864 Escherichia coli KO11FL Dihydrofolate reductase YP_005279501.1 4058406 R 595495 CDS YP_005279502.1 378714609 11778515 complement(4059077..4060939) 1 NC_016902.1 KEGG: sbc:SbBS512_E0041 glutathione-regulated potassium-efflux system protein KefC; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; potassium efflux system protein 4060939 11778515 EKO11_3865 Escherichia coli KO11FL potassium efflux system protein YP_005279502.1 4059077 R 595495 CDS YP_005279503.1 378714610 11779734 complement(4060932..4061462) 1 NC_016902.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: ebd:ECBD_3569 glutathione-regulated potassium-efflux system ancillary protein KefF; NAD(P)H dehydrogenase (quinone) 4061462 11779734 EKO11_3866 Escherichia coli KO11FL NAD(P)H dehydrogenase (quinone) YP_005279503.1 4060932 R 595495 CDS YP_005279504.1 378714611 11778516 complement(4061570..4062901) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: ebd:ECBD_3570 major facilitator superfamily MFS_1; major facilitator superfamily protein 4062901 11778516 EKO11_3867 Escherichia coli KO11FL major facilitator superfamily protein YP_005279504.1 4061570 R 595495 CDS YP_005279505.1 378714612 11778517 complement(4062960..4063247) 1 NC_016902.1 KEGG: sdy:SDY_0066 putative ferredoxin; putative ferredoxin 4063247 11778517 EKO11_3868 Escherichia coli KO11FL putative ferredoxin YP_005279505.1 4062960 R 595495 CDS YP_005279506.1 378714613 11778518 complement(4063244..4064530) 1 NC_016902.1 PFAM: FAD dependent oxidoreductase; KEGG: ebd:ECBD_3572 putative oxidoreductase FixC; FAD dependent oxidoreductase 4064530 11778518 EKO11_3869 Escherichia coli KO11FL FAD dependent oxidoreductase YP_005279506.1 4063244 R 595495 CDS YP_005279507.1 378714614 11778519 complement(4064581..4065522) 1 NC_016902.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: ssn:SSON_0050 putative electron transfer flavoprotein FixB; electron transfer flavoprotein subunit alpha 4065522 11778519 EKO11_3870 Escherichia coli KO11FL electron transfer flavoprotein subunit alpha YP_005279507.1 4064581 R 595495 CDS YP_005279508.1 378714615 11779735 complement(4065537..4066307) 1 NC_016902.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: sfv:SFV_0035 putative electron transfer flavoprotein FixA; electron transfer flavoprotein subunit alpha/beta 4066307 11779735 EKO11_3871 Escherichia coli KO11FL electron transfer flavoprotein subunit alpha/beta YP_005279508.1 4065537 R 595495 CDS YP_005279509.1 378714616 11778520 4066781..4068295 1 NC_016902.1 KEGG: ssn:SSON_0048 L-carnitine/gamma-butyrobetaine antiporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter 4068295 11778520 EKO11_3872 Escherichia coli KO11FL choline/carnitine/betaine transporter YP_005279509.1 4066781 D 595495 CDS YP_005279510.1 378714617 11778521 4068326..4069468 1 NC_016902.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: sdy:SDY_0061 crotonobetainyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4069468 11778521 EKO11_3873 Escherichia coli KO11FL acyl-CoA dehydrogenase domain-containing protein YP_005279510.1 4068326 D 595495 CDS YP_005279511.1 378714618 11778522 4069597..4070814 1 NC_016902.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sfx:S0037 crotonobetainyl-CoA:carnitine CoA-transferase; L-carnitine dehydratase/bile acid-inducible protein F 4070814 11778522 EKO11_3874 Escherichia coli KO11FL L-carnitine dehydratase/bile acid-inducible protein F YP_005279511.1 4069597 D 595495 CDS YP_005279512.1 378714619 11778523 4070888..4072441 1 NC_016902.1 PFAM: AMP-dependent synthetase and ligase; KEGG: eoi:ECO111_0038 putative crotonobetaine/carnitine-CoA ligase; AMP-dependent synthetase and ligase 4072441 11778523 EKO11_3875 Escherichia coli KO11FL AMP-dependent synthetase and ligase YP_005279512.1 4070888 D 595495 CDS YP_005279513.1 378714620 11778524 4072550..4073335 1 NC_016902.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: eoi:ECO111_0037 carnitinyl-CoA dehydratase; Enoyl-CoA hydratase/isomerase 4073335 11778524 EKO11_3876 Escherichia coli KO11FL Enoyl-CoA hydratase/isomerase YP_005279513.1 4072550 D 595495 CDS YP_005279514.1 378714621 11778525 4073341..4073931 1 NC_016902.1 KEGG: ssn:SSON_0041 carnitine operon protein CaiE; carnitine operon protein CaiE 4073931 11778525 EKO11_3877 Escherichia coli KO11FL carnitine operon protein CaiE YP_005279514.1 4073341 D 595495 CDS YP_005279515.1 378714622 11778526 complement(4074017..4074412) 1 NC_016902.1 KEGG: eoh:ECO103_0036 DNA-binding transcriptional activator CaiF; DNA-binding transcriptional activator CaiF 4074412 11778526 EKO11_3878 Escherichia coli KO11FL DNA-binding transcriptional activator CaiF YP_005279515.1 4074017 R 595495 CDS YP_005279516.1 378714623 11778527 4074447..4074665 1 NC_016902.1 KEGG: eoh:ECO103_0035 hypothetical protein; hypothetical protein 4074665 11778527 EKO11_3879 Escherichia coli KO11FL hypothetical protein YP_005279516.1 4074447 D 595495 CDS YP_005279517.1 378714624 11778528 complement(4074673..4077894) 1 NC_016902.1 KEGG: sbo:SBO_0032 carbamoyl phosphate synthase large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; carbamoyl-phosphate synthase large subunit 4077894 11778528 EKO11_3880 Escherichia coli KO11FL carbamoyl-phosphate synthase large subunit YP_005279517.1 4074673 R 595495 CDS YP_005279518.1 378714625 11778529 complement(4077912..4079060) 1 NC_016902.1 KEGG: sbc:SbBS512_E0036 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; carbamoyl-phosphate synthase small subunit 4079060 11778529 EKO11_3881 Escherichia coli KO11FL carbamoyl-phosphate synthase small subunit YP_005279518.1 4077912 R 595495 CDS YP_005279519.1 378714626 11778530 complement(4079516..4080337) 1 NC_016902.1 KEGG: enc:ECL_00838 hypothetical protein; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 4080337 11778530 EKO11_3882 Escherichia coli KO11FL dihydrodipicolinate reductase YP_005279519.1 4079516 R 595495 CDS YP_005279520.1 378714627 11778531 complement(4080504..4081418) 1 NC_016902.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: eoh:ECO103_0031 ribonucleoside hydrolase RihC; inosine/uridine-preferring nucleoside hydrolase 4081418 11778531 EKO11_3883 Escherichia coli KO11FL inosine/uridine-preferring nucleoside hydrolase YP_005279520.1 4080504 R 595495 CDS YP_005279521.1 378714628 11778532 complement(4081484..4082434) 1 NC_016902.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: sdy:SDY_0051 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 4082434 11778532 EKO11_3884 Escherichia coli KO11FL hydroxymethylbutenyl pyrophosphate reductase YP_005279521.1 4081484 R 595495 CDS YP_005279522.1 378714629 11778533 complement(4082436..4082885) 1 NC_016902.1 KEGG: sbc:SbBS512_E0032 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase; PFAM: peptidylprolyl isomerase FKBP-type; peptidylprolyl isomerase 4082885 11778533 EKO11_3885 Escherichia coli KO11FL peptidylprolyl isomerase YP_005279522.1 4082436 R 595495 CDS YP_005279523.1 378714630 11778534 complement(4082973..4083467) 1 NC_016902.1 TIGRFAM: lipoprotein signal peptidase; KEGG: sdy:SDY_0049 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase 4083467 11778534 EKO11_3886 Escherichia coli KO11FL lipoprotein signal peptidase YP_005279523.1 4082973 R 595495 CDS YP_005279524.1 378714631 11778535 complement(4083467..4086283) 1 NC_016902.1 KEGG: ssn:SSON_0031 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 4086283 11778535 EKO11_3887 Escherichia coli KO11FL isoleucyl-tRNA synthetase YP_005279524.1 4083467 R 595495 CDS YP_005279525.1 378714632 11778536 complement(4086326..4087267) 1 NC_016902.1 TIGRFAM: riboflavin biosynthesis protein RibF; KEGG: sbc:SbBS512_E0029 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein RibF 4087267 11778536 EKO11_3888 Escherichia coli KO11FL riboflavin biosynthesis protein RibF YP_005279525.1 4086326 R 595495 CDS YP_005279526.1 378714633 11778537 complement(4087275..4087493) 1 NC_016902.1 manually curated; KEGG: sbc:SbBS512_E0028 hypothetical protein; hypothetical protein 4087493 11778537 EKO11_3889 Escherichia coli KO11FL hypothetical protein YP_005279526.1 4087275 R 595495 CDS YP_005279527.1 378714634 11778538 4087596..4087859 1 NC_016902.1 KEGG: sdy:SDY_0045 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; 30S ribosomal protein S20 4087859 11778538 EKO11_3890 Escherichia coli KO11FL 30S ribosomal protein S20 YP_005279527.1 4087596 D 595495 CDS YP_005279528.1 378714635 11778541 4091355..4092314 1 NC_016902.1 KEGG: ebd:ECBD_3598 hypothetical protein; hypothetical protein 4092314 11778541 EKO11_3893 Escherichia coli KO11FL hypothetical protein YP_005279528.1 4091355 D 595495 CDS YP_005279529.1 378714636 11779736 complement(4092353..4093252) 1 NC_016902.1 PFAM: regulatory protein LysR; KEGG: sbc:SbBS512_E0020 transcriptional activator NhaR; LysR family transcriptional regulator 4093252 11779736 EKO11_3894 Escherichia coli KO11FL LysR family transcriptional regulator YP_005279529.1 4092353 R 595495 CDS YP_005279530.1 378714637 11778542 complement(4093318..4094484) 1 NC_016902.1 KEGG: ebd:ECBD_3600 pH-dependent sodium/proton antiporter; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 4094484 11778542 EKO11_3895 Escherichia coli KO11FL Na+/H+ antiporter NhaA YP_005279530.1 4093318 R 595495 CDS YP_005279531.1 378714638 11778543 4095013..4095222 1 NC_016902.1 PFAM: Hok/gef cell toxic protein; KEGG: sbo:SBO_0017 Gef; Hok/gef cell toxic protein 4095222 11778543 EKO11_3896 Escherichia coli KO11FL Hok/gef cell toxic protein YP_005279531.1 4095013 D 595495 CDS YP_005279532.1 378714639 11779737 complement(4095326..4096456) 1 NC_016902.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; KEGG: ssn:SSON_0015 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ 4096456 11779737 EKO11_3897 Escherichia coli KO11FL chaperone protein DnaJ YP_005279532.1 4095326 R 595495 CDS YP_005279533.1 378714640 11778544 complement(4096545..4098461) 1 NC_016902.1 KEGG: sdy:SDY_0013 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK 4098461 11778544 EKO11_3898 Escherichia coli KO11FL chaperone protein DnaK YP_005279533.1 4096545 R 595495 CDS YP_005279534.1 378714641 11778545 4098838..4099242 1 NC_016902.1 KEGG: eoh:ECO103_0013 hypothetical protein; hypothetical protein 4099242 11778545 EKO11_3899 Escherichia coli KO11FL hypothetical protein YP_005279534.1 4098838 D 595495 CDS YP_005279535.1 378714642 11778546 4099268..4099981 1 NC_016902.1 KEGG: eoi:ECO111_0011 hypothetical protein; hypothetical protein 4099981 11778546 EKO11_3900 Escherichia coli KO11FL hypothetical protein YP_005279535.1 4099268 D 595495 CDS YP_005279536.1 378714643 11778547 4100130..4100696 1 NC_016902.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: ssn:SSON_0011 hypothetical protein; GPR1/FUN34/yaaH family protein 4100696 11778547 EKO11_3901 Escherichia coli KO11FL GPR1/FUN34/yaaH family protein YP_005279536.1 4100130 D 595495 CDS YP_005279537.1 378714644 11778548 complement(4100731..4101318) 1 NC_016902.1 KEGG: sbc:SbBS512_E0009 molybdenum cofactor biosynthesis protein MogA; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 4101318 11778548 EKO11_3902 Escherichia coli KO11FL molybdenum cofactor synthesis domain-containing protein YP_005279537.1 4100731 R 595495 CDS YP_005279538.1 378714645 11778549 complement(4101433..4102386) 1 NC_016902.1 KEGG: sbc:SbBS512_E0008 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 4102386 11778549 EKO11_3903 Escherichia coli KO11FL transaldolase YP_005279538.1 4101433 R 595495 CDS YP_005279539.1 378714646 11778550 4102665..4104095 1 NC_016902.1 KEGG: eoh:ECO103_0008 putative transporter; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; amino acid carrier protein 4104095 11778550 EKO11_3904 Escherichia coli KO11FL amino acid carrier protein YP_005279539.1 4102665 D 595495 CDS YP_005279540.1 378714647 11778551 4104165..4104941 1 NC_016902.1 PFAM: protein of unknown function DUF328; KEGG: ebd:ECBD_3612 hypothetical protein; hypothetical protein 4104941 11778551 EKO11_3905 Escherichia coli KO11FL hypothetical protein YP_005279540.1 4104165 D 595495 CDS YP_005279541.1 378714648 11778552 complement(4105133..4106113) 1 NC_016902.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: eoh:ECO103_4940 putative IS621 transposase; transposase IS116/IS110/IS902 family protein 4106113 11778552 EKO11_3906 Escherichia coli KO11FL transposase IS116/IS110/IS902 family protein YP_005279541.1 4105133 R 595495 CDS YP_005279542.1 378714649 11778553 complement(4106373..4106669) 1 NC_016902.1 PFAM: Protein of unknown function DUF2502; KEGG: ssn:SSON_0005 hypothetical protein; hypothetical protein 4106669 11778553 EKO11_3907 Escherichia coli KO11FL hypothetical protein YP_005279542.1 4106373 R 595495 CDS YP_005279543.1 378714650 11778554 complement(4106883..4108169) 1 NC_016902.1 TIGRFAM: threonine synthase; KEGG: sdy:SDY_0004 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase 4108169 11778554 EKO11_3908 Escherichia coli KO11FL threonine synthase YP_005279543.1 4106883 R 595495 CDS YP_005279544.1 378714651 11778555 complement(4108170..4109102) 1 NC_016902.1 KEGG: sdy:SDY_0003 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; homoserine kinase 4109102 11778555 EKO11_3909 Escherichia coli KO11FL homoserine kinase YP_005279544.1 4108170 R 595495 CDS YP_005279545.1 378714652 11778556 complement(4109104..4111566) 1 NC_016902.1 KEGG: ebd:ECBD_3616 bifunctional aspartokinase I/homeserine dehydrogenase I; TIGRFAM: aspartate kinase; PFAM: homoserine dehydrogenase; aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; aspartate kinase 4111566 11778556 EKO11_3910 Escherichia coli KO11FL aspartate kinase YP_005279545.1 4109104 R 595495 CDS YP_005279546.1 378714653 11778557 complement(4111926..4112612) 1 NC_016902.1 KEGG: sfl:SF4434 putative RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase, TrmH family, group 1 4112612 11778557 EKO11_3911 Escherichia coli KO11FL RNA methyltransferase, TrmH family, group 1 YP_005279546.1 4111926 R 595495 CDS YP_005279547.1 378714654 11778558 4113248..4113964 1 NC_016902.1 KEGG: sdy:SDY_4662 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 4113964 11778558 EKO11_3912 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005279547.1 4113248 D 595495 CDS YP_005279548.1 378714655 11778559 complement(4114024..4115376) 1 NC_016902.1 PFAM: Inner membrane CreD family protein; KEGG: ebd:ECBD_3620 hypothetical protein; Inner membrane CreD family protein 4115376 11778559 EKO11_3913 Escherichia coli KO11FL Inner membrane CreD family protein YP_005279548.1 4114024 R 595495 CDS YP_005279549.1 378714656 11779738 complement(4115434..4116858) 1 NC_016902.1 KEGG: eoh:ECO103_5260 sensory histidine kinase CreC; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 4116858 11779738 EKO11_3914 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005279549.1 4115434 R 595495 CDS YP_005279550.1 378714657 11778560 complement(4116858..4117547) 1 NC_016902.1 KEGG: eoi:ECO111_5259 DNA-binding response regulator CreB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 4117547 11778560 EKO11_3915 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005279550.1 4116858 R 595495 CDS YP_005279551.1 378714658 11778561 complement(4117560..4118033) 1 NC_016902.1 PFAM: CreA family protein; KEGG: sdy:SDY_4658 hypothetical protein; CreA family protein 4118033 11778561 EKO11_3916 Escherichia coli KO11FL CreA family protein YP_005279551.1 4117560 R 595495 CDS YP_005279552.1 378714659 11778562 4118244..4119113 1 NC_016902.1 KEGG: sbc:SbBS512_E4943 right origin-binding protein; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 4119113 11778562 EKO11_3917 Escherichia coli KO11FL AraC family transcriptional regulator YP_005279552.1 4118244 D 595495 CDS YP_005279553.1 378714660 11778563 complement(4119110..4119757) 1 NC_016902.1 PFAM: Phosphoglycerate mutase; KEGG: ssn:SSON_4545 phosphoglycerate mutase; phosphoglycerate mutase 4119757 11778563 EKO11_3918 Escherichia coli KO11FL phosphoglycerate mutase YP_005279553.1 4119110 R 595495 CDS YP_005279554.1 378714661 11778564 4119809..4120321 1 NC_016902.1 PFAM: protein of unknown function DUF84; KEGG: ebd:ECBD_3626 NTPase; hypothetical protein 4120321 11778564 EKO11_3919 Escherichia coli KO11FL hypothetical protein YP_005279554.1 4119809 D 595495 CDS YP_005279555.1 378714662 11778565 complement(4120363..4120689) 1 NC_016902.1 manually curated; TIGRFAM: trp operon repressor; KEGG: sdy:SDY_4654 Trp operon repressor; PFAM: Trp repressor; Trp operon repressor 4120689 11778565 EKO11_3920 Escherichia coli KO11FL Trp operon repressor YP_005279555.1 4120363 R 595495 CDS YP_005279556.1 378714663 11778566 complement(4120779..4122716) 1 NC_016902.1 PFAM: Lytic transglycosylase catalytic; KEGG: sbo:SBO_4455 lytic murein transglycosylase; lytic transglycosylase 4122716 11778566 EKO11_3921 Escherichia coli KO11FL lytic transglycosylase YP_005279556.1 4120779 R 595495 CDS YP_005279557.1 378714664 11778567 4122927..4124594 1 NC_016902.1 KEGG: sdy:SDY_4652 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4124594 11778567 EKO11_3922 Escherichia coli KO11FL ABC transporter YP_005279557.1 4122927 D 595495 CDS YP_005279558.1 378714665 11778568 complement(4124701..4124850) 1 NC_016902.1 manually curated; KEGG: sbc:SbBS512_E4938 hypothetical protein; hypothetical protein 4124850 11778568 EKO11_3923 Escherichia coli KO11FL hypothetical protein YP_005279558.1 4124701 R 595495 CDS YP_005279559.1 378714666 11778569 complement(4124901..4126133) 1 NC_016902.1 TIGRFAM: nicotinamide-nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E4937 nicotinamide-nucleotide adenylyltransferase; SMART: helix-turn-helix domain protein; transcriptional regulator, XRE family 4126133 11778569 EKO11_3924 Escherichia coli KO11FL transcriptional regulator, XRE family YP_005279559.1 4124901 R 595495 CDS YP_005279560.1 378714667 11778570 complement(4126154..4127536) 1 NC_016902.1 KEGG: sdy:SDY_4650 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; DNA repair protein RadA 4127536 11778570 EKO11_3925 Escherichia coli KO11FL DNA repair protein RadA YP_005279560.1 4126154 R 595495 CDS YP_005279561.1 378714668 11778571 complement(4127585..4128640) 1 NC_016902.1 PFAM: Haloacid dehalogenase domain protein hydrolase; manually curated; KEGG: sbc:SbBS512_E4935 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); phosphoserine phosphatase SerB 4128640 11778571 EKO11_3926 Escherichia coli KO11FL phosphoserine phosphatase SerB YP_005279561.1 4127585 R 595495 CDS YP_005279562.1 378714669 11778572 4128659..4129303 1 NC_016902.1 PFAM: Virulence factor, haemolysin regulator; KEGG: sbo:SBO_4450 hypothetical protein; Virulence factor, hemolysin regulator 4129303 11778572 EKO11_3927 Escherichia coli KO11FL Virulence factor, hemolysin regulator YP_005279562.1 4128659 D 595495 CDS YP_005279563.1 378714670 11778573 4129331..4130347 1 NC_016902.1 KEGG: eoh:ECO103_5247 lipoate-protein ligase A; TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; Lipoate protein ligase-like; lipoyltransferase and lipoate-protein ligase 4130347 11778573 EKO11_3928 Escherichia coli KO11FL lipoyltransferase and lipoate-protein ligase YP_005279563.1 4129331 D 595495 CDS YP_005279564.1 378714671 11778575 complement(4130803..4131522) 1 NC_016902.1 KEGG: sbc:SbBS512_E4931 purine nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; purine nucleoside phosphorylase 4131522 11778575 EKO11_3930 Escherichia coli KO11FL purine nucleoside phosphorylase YP_005279564.1 4130803 R 595495 CDS YP_005279565.1 378714672 11778576 complement(4131602..4132825) 1 NC_016902.1 TIGRFAM: phosphopentomutase; KEGG: sbc:SbBS512_E4930 phosphopentomutase; PFAM: metalloenzyme domain protein; phosphopentomutase 4132825 11778576 EKO11_3931 Escherichia coli KO11FL phosphopentomutase YP_005279565.1 4131602 R 595495 CDS YP_005279566.1 378714673 11778577 complement(4132877..4134199) 1 NC_016902.1 TIGRFAM: thymidine phosphorylase; pyrimidine-nucleoside phosphorylase; KEGG: sbc:SbBS512_E4929 thymidine phosphorylase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; Pyrimidine nucleoside phosphorylase domain; thymidine phosphorylase 4134199 11778577 EKO11_3932 Escherichia coli KO11FL thymidine phosphorylase YP_005279566.1 4132877 R 595495 CDS YP_005279567.1 378714674 11778578 complement(4134326..4135105) 1 NC_016902.1 TIGRFAM: deoxyribose-phosphate aldolase; KEGG: sdy:SDY_4641 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase 4135105 11778578 EKO11_3933 Escherichia coli KO11FL deoxyribose-phosphate aldolase YP_005279567.1 4134326 R 595495 CDS YP_005279568.1 378714675 11778579 4135363..4136913 1 NC_016902.1 KEGG: ebw:BWG_4072 hypothetical protein; hypothetical protein 4136913 11778579 EKO11_3934 Escherichia coli KO11FL hypothetical protein YP_005279568.1 4135363 D 595495 CDS YP_005279569.1 378714676 11779739 4136885..4137748 1 NC_016902.1 PFAM: Radical SAM domain protein; KEGG: ssn:SSON_4530 putative activating enzyme; radical SAM protein 4137748 11779739 EKO11_3935 Escherichia coli KO11FL radical SAM protein YP_005279569.1 4136885 D 595495 CDS YP_005279570.1 378714677 11778580 complement(4137861..4138643) 1 NC_016902.1 PFAM: TatD-related deoxyribonuclease; KEGG: eoj:ECO26_5584 putative deoxyribonuclease YjjV; TatD-related deoxyribonuclease 4138643 11778580 EKO11_3936 Escherichia coli KO11FL TatD-related deoxyribonuclease YP_005279570.1 4137861 R 595495 CDS YP_005279571.1 378714678 11778581 complement(4138640..4139713) 1 NC_016902.1 PFAM: Patatin; KEGG: ssn:SSON_4528 hypothetical protein; patatin 4139713 11778581 EKO11_3937 Escherichia coli KO11FL patatin YP_005279571.1 4138640 R 595495 CDS YP_005279572.1 378714679 11778582 complement(4139835..4139996) 1 NC_016902.1 PFAM: protein of unknown function DUF1328; KEGG: cro:ROD_48991 hypothetical protein; hypothetical protein 4139996 11778582 EKO11_3938 Escherichia coli KO11FL hypothetical protein YP_005279572.1 4139835 R 595495 CDS YP_005279573.1 378714680 11778583 complement(4140123..4140728) 1 NC_016902.1 KEGG: ssn:SSON_4526 periplasmic protein; PFAM: transport-associated; SMART: Transport-associated and nodulation region; transport-associated protein 4140728 11778583 EKO11_3939 Escherichia coli KO11FL transport-associated protein YP_005279573.1 4140123 R 595495 CDS YP_005279574.1 378714681 11779740 complement(4141121..4142737) 1 NC_016902.1 KEGG: sbc:SbBS512_E4918 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; peptide chain release factor 3 4142737 11779740 EKO11_3940 Escherichia coli KO11FL peptide chain release factor 3 YP_005279574.1 4141121 R 595495 CDS YP_005279575.1 378714682 11778584 complement(4142801..4143478) 1 NC_016902.1 KEGG: eoh:ECO103_5158 nucleotidase; TIGRFAM: HAD superfamily (subfamily IA) hydrolase, TIGR02254; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD superfamily hydrolase 4143478 11778584 EKO11_3941 Escherichia coli KO11FL HAD superfamily hydrolase YP_005279575.1 4142801 R 595495 CDS YP_005279576.1 378714683 11778585 complement(4143493..4143939) 1 NC_016902.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; KEGG: ssn:SSON_4523 ribosomal-protein-alanine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 4143939 11778585 EKO11_3942 Escherichia coli KO11FL ribosomal-protein-alanine acetyltransferase YP_005279576.1 4143493 R 595495 CDS YP_005279577.1 378714684 11778586 complement(4143908..4144321) 1 NC_016902.1 TIGRFAM: DNA polymerase III, psi subunit; KEGG: sdy:SDY_4631 DNA polymerase III subunit psi; PFAM: DNA polymerase III psi subunit; DNA polymerase III subunit psi 4144321 11778586 EKO11_3943 Escherichia coli KO11FL DNA polymerase III subunit psi YP_005279577.1 4143908 R 595495 CDS YP_005279578.1 378714685 11778587 4144424..4145455 1 NC_016902.1 KEGG: ssn:SSON_4521 16S ribosomal RNA m2G1207 methyltransferase; PFAM: Methyltransferase small domain protein; methyltransferase small; rRNA (guanine-N(2)-)-methyltransferase 4145455 11778587 EKO11_3944 Escherichia coli KO11FL rRNA (guanine-N(2)-)-methyltransferase YP_005279578.1 4144424 D 595495 CDS YP_005279579.1 378714686 11778590 complement(4146084..4146320) 1 NC_016902.1 PFAM: protein of unknown function DUF1435; KEGG: eoi:ECO111_5229 hypothetical protein; hypothetical protein 4146320 11778590 EKO11_3945 Escherichia coli KO11FL hypothetical protein YP_005279579.1 4146084 R 595495 CDS YP_005279580.1 378714687 11778591 4146461..4147249 1 NC_016902.1 KEGG: eoi:ECO111_5228 ferric iron reductase involved in ferric hydroximate transport; ferric hydroximate transport ferric iron reductase 4147249 11778591 EKO11_3946 Escherichia coli KO11FL ferric hydroximate transport ferric iron reductase YP_005279580.1 4146461 D 595495 CDS YP_005279581.1 378714688 11778592 complement(4147287..4147964) 1 NC_016902.1 KEGG: eok:G2583_5168 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 4147964 11778592 EKO11_3947 Escherichia coli KO11FL LuxR family transcriptional regulator YP_005279581.1 4147287 R 595495 CDS YP_005279582.1 378714689 11778593 complement(4147922..4148647) 1 NC_016902.1 KEGG: eoi:ECO111_5226 putative DNA-binding transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 4148647 11778593 EKO11_3948 Escherichia coli KO11FL LuxR family transcriptional regulator YP_005279582.1 4147922 R 595495 CDS YP_005279583.1 378714690 11779742 4149203..4150036 1 NC_016902.1 KEGG: sbc:SbBS512_E4904 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1212; hypothetical protein 4150036 11779742 EKO11_3949 Escherichia coli KO11FL hypothetical protein YP_005279583.1 4149203 D 595495 CDS YP_005279584.1 378714691 11778594 4150027..4150500 1 NC_016902.1 KEGG: eoi:ECO111_5224 hypothetical protein; hypothetical protein 4150500 11778594 EKO11_3950 Escherichia coli KO11FL hypothetical protein YP_005279584.1 4150027 D 595495 CDS YP_005279585.1 378714692 11778595 4150607..4151146 1 NC_016902.1 KEGG: sbc:SbBS512_E4902 primosomal protein DnaI; primosomal protein DnaI 4151146 11778595 EKO11_3951 Escherichia coli KO11FL primosomal protein DnaI YP_005279585.1 4150607 D 595495 CDS YP_005279586.1 378714693 11778596 4151149..4151886 1 NC_016902.1 SMART: AAA ATPase; KEGG: sbc:SbBS512_E4901 DNA replication protein DnaC; AAA ATPase 4151886 11778596 EKO11_3952 Escherichia coli KO11FL AAA ATPase YP_005279586.1 4151149 D 595495 CDS YP_005279587.1 378714694 11778597 4151935..4152429 1 NC_016902.1 PFAM: Protein of unknown function DUF2501; KEGG: eoh:ECO103_5144 hypothetical protein; hypothetical protein 4152429 11778597 EKO11_3953 Escherichia coli KO11FL hypothetical protein YP_005279587.1 4151935 D 595495 CDS YP_005279588.1 378714695 11779743 4152683..4154974 1 NC_016902.1 KEGG: ssn:SSON_4505 phosphoglycerol transferase I; PFAM: sulfatase; phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase 4154974 11779743 EKO11_3954 Escherichia coli KO11FL phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase YP_005279588.1 4152683 D 595495 CDS YP_005279589.1 378714696 11778598 complement(4155113..4156135) 1 NC_016902.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ssn:SSON_4504 putative oxidoreductase; alcohol dehydrogenase GroES domain-containing protein 4156135 11778598 EKO11_3955 Escherichia coli KO11FL alcohol dehydrogenase GroES domain-containing protein YP_005279589.1 4155113 R 595495 CDS YP_005279590.1 378714697 11779744 4156274..4157188 1 NC_016902.1 PFAM: GntR domain protein; regulatory protein GntR HTH; KEGG: eok:G2583_5159 transcriptional regulator, GntR family; GntR family transcriptional regulator 4157188 11779744 EKO11_3956 Escherichia coli KO11FL GntR family transcriptional regulator YP_005279590.1 4156274 D 595495 CDS YP_005279591.1 378714698 11778599 4157403..4158764 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoh:ECO103_5140 putative transporter; major facilitator superfamily protein 4158764 11778599 EKO11_3957 Escherichia coli KO11FL major facilitator superfamily protein YP_005279591.1 4157403 D 595495 CDS YP_005279592.1 378714699 11778600 complement(4158813..4160477) 1 NC_016902.1 KEGG: eok:G2583_5157 methyl-accepting chemotaxis protein I; PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 4160477 11778600 EKO11_3958 Escherichia coli KO11FL methyl-accepting chemotaxis sensory transducer YP_005279592.1 4158813 R 595495 CDS YP_005279593.1 378714700 11778601 complement(4160596..4161093) 1 NC_016902.1 SMART: regulatory protein MarR; manually curated; KEGG: sfv:SFV_4385 regulator of the 4HPA-hydroxylase operon; TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; MarR family transcriptional regulator 4161093 11778601 EKO11_3959 Escherichia coli KO11FL MarR family transcriptional regulator YP_005279593.1 4160596 R 595495 CDS YP_005279594.1 378714701 11778602 4161314..4162603 1 NC_016902.1 TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; KEGG: sfv:SFV_4384 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 4162603 11778602 EKO11_3960 Escherichia coli KO11FL 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 YP_005279594.1 4161314 D 595495 CDS YP_005279595.1 378714702 11779745 4162600..4164066 1 NC_016902.1 KEGG: sbc:SbBS512_E4889 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 4164066 11779745 EKO11_3961 Escherichia coli KO11FL 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_005279595.1 4162600 D 595495 CDS YP_005279596.1 378714703 11778603 4164068..4164919 1 NC_016902.1 TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; KEGG: sbc:SbBS512_E4888 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 4164919 11778603 EKO11_3962 Escherichia coli KO11FL 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_005279596.1 4164068 D 595495 CDS YP_005279597.1 378714704 11778604 4164929..4165309 1 NC_016902.1 KEGG: sbc:SbBS512_E4887 5-carboxymethyl-2-hydroxymuconate delta isomerase; PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 4165309 11778604 EKO11_3963 Escherichia coli KO11FL 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_005279597.1 4164929 D 595495 CDS YP_005279598.1 378714705 11778605 4165420..4166223 1 NC_016902.1 TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; KEGG: ssn:SSON_4495 2-oxo-hept-3-ene-1,7-dioate hydratase; PFAM: fumarylacetoacetate (FAA) hydrolase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 4166223 11778605 EKO11_3964 Escherichia coli KO11FL 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_005279598.1 4165420 D 595495 CDS YP_005279599.1 378714706 11778606 4166234..4167022 1 NC_016902.1 TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: eoi:ECO111_5209 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 4167022 11778606 EKO11_3965 Escherichia coli KO11FL 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_005279599.1 4166234 D 595495 CDS YP_005279600.1 378714707 11779746 4167197..4168573 1 NC_016902.1 KEGG: sbo:SBO_4406 putative 4-hydroxyphenylacetate permease; TIGRFAM: 4-hydroxyphenylacetate transporter; PFAM: major facilitator superfamily MFS_1; 4-hydroxyphenylacetate transporter 4168573 11779746 EKO11_3966 Escherichia coli KO11FL 4-hydroxyphenylacetate transporter YP_005279600.1 4167197 D 595495 CDS YP_005279601.1 378714708 11778607 4168583..4169473 1 NC_016902.1 TIGRFAM: 4-hydroxyphenylacetate catabolism regulatory protein HpaA; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: ebd:ECBD_3673 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 4169473 11778607 EKO11_3967 Escherichia coli KO11FL AraC family transcriptional regulator YP_005279601.1 4168583 D 595495 CDS YP_005279602.1 378714709 11778608 4169724..4171286 1 NC_016902.1 KEGG: efe:EFER_3070 4-hydroxyphenylacetate 3-monooxygenase large component; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; 4-hydroxyphenylacetate 3-monooxygenase oxygenase subunit 4171286 11778608 EKO11_3968 Escherichia coli KO11FL 4-hydroxyphenylacetate 3-monooxygenase oxygenase subunit YP_005279602.1 4169724 D 595495 CDS YP_005279603.1 378714710 11778609 4171304..4171816 1 NC_016902.1 KEGG: sbc:SbBS512_E4881 4-hydroxyphenylacetate 3-monooxygenase, reductase component; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit; PFAM: flavin reductase domain protein FMN-binding; 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit 4171816 11778609 EKO11_3969 Escherichia coli KO11FL 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit YP_005279603.1 4171304 D 595495 CDS YP_005279604.1 378714711 11778610 4172209..4174359 1 NC_016902.1 PFAM: carbon starvation protein CstA; KEGG: sbc:SbBS512_E4880 carbon starvation family protein; carbon starvation protein CstA 4174359 11778610 EKO11_3970 Escherichia coli KO11FL carbon starvation protein CstA YP_005279604.1 4172209 D 595495 CDS YP_005279605.1 378714712 11778611 4174409..4174612 1 NC_016902.1 PFAM: protein of unknown function DUF466; KEGG: sdy:SDY_4606 hypothetical protein; hypothetical protein 4174612 11778611 EKO11_3971 Escherichia coli KO11FL hypothetical protein YP_005279605.1 4174409 D 595495 CDS YP_005279606.1 378714713 11778612 4174623..4175579 1 NC_016902.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: eoh:ECO103_5124 putative GTP-binding protein YjiA; cobalamin synthesis protein P47K 4175579 11778612 EKO11_3972 Escherichia coli KO11FL cobalamin synthesis protein P47K YP_005279606.1 4174623 D 595495 CDS YP_005279607.1 378714714 11779747 complement(4175657..4178197) 1 NC_016902.1 KEGG: eoh:ECO103_5123 penicillin G acylase precursor; PFAM: peptidase S45 penicillin amidase; penicillin amidase 4178197 11779747 EKO11_3973 Escherichia coli KO11FL penicillin amidase YP_005279607.1 4175657 R 595495 CDS YP_005279608.1 378714715 11778613 complement(4178549..4178713) 1 NC_016902.1 KEGG: eoh:ECO103_5122 hypothetical protein; hypothetical protein 4178713 11778613 EKO11_3974 Escherichia coli KO11FL hypothetical protein YP_005279608.1 4178549 R 595495 CDS YP_005279609.1 378714716 11778614 4178845..4180257 1 NC_016902.1 KEGG: eoh:ECO103_5121 fused putative DNA-binding transcriptional regulator/putative amino transferase; PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; DeoR family transcriptional regulator 4180257 11778614 EKO11_3975 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005279609.1 4178845 D 595495 CDS YP_005279610.1 378714717 11778615 complement(4180499..4181443) 1 NC_016902.1 PFAM: transposase YhgA family protein; KEGG: eoj:ECO26_5535 hypothetical protein; transposase YhgA family protein 4181443 11778615 EKO11_3976 Escherichia coli KO11FL transposase YhgA family protein YP_005279610.1 4180499 R 595495 CDS YP_005279611.1 378714718 11778616 4181910..4183142 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoi:ECO111_5194 multidrug efflux system protein; major facilitator superfamily protein 4183142 11778616 EKO11_3977 Escherichia coli KO11FL major facilitator superfamily protein YP_005279611.1 4181910 D 595495 CDS YP_005279612.1 378714719 11778617 4183183..4184463 1 NC_016902.1 PFAM: protein of unknown function DUF445; KEGG: eoh:ECO103_5118 hypothetical protein; hypothetical protein 4184463 11778617 EKO11_3978 Escherichia coli KO11FL hypothetical protein YP_005279612.1 4183183 D 595495 CDS YP_005279613.1 378714720 11778618 4184579..4185730 1 NC_016902.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: eoj:ECO26_5532 putative 2-hydroxyglutaryl-CoA dehydratase; 2-hydroxyglutaryl-CoA dehydratase subunit D 4185730 11778618 EKO11_3979 Escherichia coli KO11FL 2-hydroxyglutaryl-CoA dehydratase subunit D YP_005279613.1 4184579 D 595495 CDS YP_005279614.1 378714721 11778619 4185740..4186507 1 NC_016902.1 TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: sbc:SbBS512_E4770 (R)-2-hydroxyglutaryl-CoA dehydratase activator; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA-substrate-specific enzyme activase 4186507 11778619 EKO11_3980 Escherichia coli KO11FL CoA-substrate-specific enzyme activase YP_005279614.1 4185740 D 595495 CDS YP_005279615.1 378714722 11778620 4186504..4186761 1 NC_016902.1 KEGG: eoh:ECO103_5115 hypothetical protein; hypothetical protein 4186761 11778620 EKO11_3981 Escherichia coli KO11FL hypothetical protein YP_005279615.1 4186504 D 595495 CDS YP_005279616.1 378714723 11778621 4186715..4187686 1 NC_016902.1 PFAM: SdiA-regulated domain protein; KEGG: sbo:SBO_4384 hypothetical protein; SdiA-regulated domain-containing protein 4187686 11778621 EKO11_3982 Escherichia coli KO11FL SdiA-regulated domain-containing protein YP_005279616.1 4186715 D 595495 CDS YP_005279617.1 378714724 11778622 4187754..4188932 1 NC_016902.1 KEGG: eoh:ECO103_5113 putative inner membrane protein; putative inner membrane protein 4188932 11778622 EKO11_3983 Escherichia coli KO11FL putative inner membrane protein YP_005279617.1 4187754 D 595495 CDS YP_005279618.1 378714725 11778623 complement(4188945..4189499) 1 NC_016902.1 PFAM: phosphotransferase KptA/Tpt1; KEGG: eoh:ECO103_5112 RNA 2'-phosphotransferase-like protein; phosphotransferase KptA/Tpt1 4189499 11778623 EKO11_3984 Escherichia coli KO11FL phosphotransferase KptA/Tpt1 YP_005279618.1 4188945 R 595495 CDS YP_005279619.1 378714726 11778624 4189749..4190432 1 NC_016902.1 PFAM: nucleoside recognition domain protein; KEGG: sbc:SbBS512_E4775 putative transporter; nucleoside recognition domain-containing protein 4190432 11778624 EKO11_3985 Escherichia coli KO11FL nucleoside recognition domain-containing protein YP_005279619.1 4189749 D 595495 CDS YP_005279620.1 378714727 11778625 4190429..4190890 1 NC_016902.1 PFAM: nucleoside recognition domain protein; KEGG: sbo:SBO_4380 hypothetical protein; nucleoside recognition domain-containing protein 4190890 11778625 EKO11_3986 Escherichia coli KO11FL nucleoside recognition domain-containing protein YP_005279620.1 4190429 D 595495 CDS YP_005279621.1 378714728 11778626 4190903..4192075 1 NC_016902.1 KEGG: eoi:ECO111_5184 isoaspartyl dipeptidase; TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase; isoaspartyl dipeptidase 4192075 11778626 EKO11_3987 Escherichia coli KO11FL isoaspartyl dipeptidase YP_005279621.1 4190903 D 595495 CDS YP_005279622.1 378714729 11778627 4192140..4193051 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ebd:ECBD_3704 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 4193051 11778627 EKO11_3988 Escherichia coli KO11FL LysR family transcriptional regulator YP_005279622.1 4192140 D 595495 CDS YP_005279623.1 378714730 11778628 complement(4193044..4193436) 1 NC_016902.1 PFAM: GPW/gp25 family protein; KEGG: eoi:ECO111_5182 DNA replication/recombination/repair protein; GPW/gp25 family protein 4193436 11778628 EKO11_3989 Escherichia coli KO11FL GPW/gp25 family protein YP_005279623.1 4193044 R 595495 CDS YP_005279624.1 378714731 11778629 4194109..4194939 1 NC_016902.1 KEGG: eoi:ECO111_5181 hypothetical protein; hypothetical protein 4194939 11778629 EKO11_3990 Escherichia coli KO11FL hypothetical protein YP_005279624.1 4194109 D 595495 CDS YP_005279625.1 378714732 11778630 complement(4195080..4195853) 1 NC_016902.1 manually curated; PFAM: GntR domain protein; regulatory protein GntR HTH; KEGG: sbc:SbBS512_E4789 DNA-binding transcriptional repressor UxuR; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 4195853 11778630 EKO11_3991 Escherichia coli KO11FL GntR family transcriptional regulator YP_005279625.1 4195080 R 595495 CDS YP_005279626.1 378714733 11778631 complement(4196068..4197528) 1 NC_016902.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: eoi:ECO111_5179 D-mannonate oxidoreductase UxuB, NAD-binding; mannitol dehydrogenase domain-containing protein 4197528 11778631 EKO11_3992 Escherichia coli KO11FL mannitol dehydrogenase domain-containing protein YP_005279626.1 4196068 R 595495 CDS YP_005279627.1 378714734 11778632 complement(4197609..4198793) 1 NC_016902.1 TIGRFAM: mannonate dehydratase; KEGG: eoh:ECO103_5103 mannonate dehydratase; PFAM: Mannonate dehydratase; mannonate dehydratase 4198793 11778632 EKO11_3993 Escherichia coli KO11FL mannonate dehydratase YP_005279627.1 4197609 R 595495 CDS YP_005279628.1 378714735 11778633 4199133..4200476 1 NC_016902.1 KEGG: ebd:ECBD_3714 fructuronate transporter; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; gluconate transporter 4200476 11778633 EKO11_3994 Escherichia coli KO11FL gluconate transporter YP_005279628.1 4199133 D 595495 CDS YP_005279629.1 378714736 11778634 complement(4200719..4201621) 1 NC_016902.1 PFAM: FimH mannose-binding protein; Fimbrial protein domain-containing protein; KEGG: eok:G2583_5121 adhesin; FimH mannose-binding protein 4201621 11778634 EKO11_3995 Escherichia coli KO11FL FimH mannose-binding protein YP_005279629.1 4200719 R 595495 CDS YP_005279630.1 378714737 11778635 complement(4201641..4202144) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eok:G2583_5120 FimG; fimbrial protein domain-containing protein 4202144 11778635 EKO11_3996 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005279630.1 4201641 R 595495 CDS YP_005279631.1 378714738 11778636 complement(4202157..4202687) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sbo:SBO_4368 fimbrial morphology; fimbrial protein domain-containing protein 4202687 11778636 EKO11_3997 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005279631.1 4202157 R 595495 CDS YP_005279632.1 378714739 11778637 complement(4202697..4205333) 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoh:ECO103_5098 outer membrane usher protein FimD; fimbrial biogenesis outer membrane usher protein 4205333 11778637 EKO11_3998 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005279632.1 4202697 R 595495 CDS YP_005279633.1 378714740 11779748 complement(4205400..4206125) 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ebd:ECBD_3719 pili assembly chaperone, N-terminal; Pili assembly chaperone, N-terminal protein 4206125 11779748 EKO11_3999 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005279633.1 4205400 R 595495 CDS YP_005279634.1 378714741 11778638 complement(4206162..4206701) 1 NC_016902.1 KEGG: ebd:ECBD_3720 fimbrial protein; manually curated; PFAM: Fimbrial protein domain-containing protein; fimbrial protein domain-containing protein 4206701 11778638 EKO11_4000 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005279634.1 4206162 R 595495 CDS YP_005279635.1 378714742 11778639 complement(4206766..4207314) 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eoi:ECO111_5168 major type 1 subunit fimbrin (pilin) FimA; fimbrial protein domain-containing protein 4207314 11778639 EKO11_4001 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005279635.1 4206766 R 595495 CDS YP_005279636.1 378714743 11779749 complement(4207794..4208390) 1 NC_016902.1 PFAM: integrase family protein; KEGG: sfx:S4466 tyrosine recombinase; integrase family protein 4208390 11779749 EKO11_4002 Escherichia coli KO11FL integrase family protein YP_005279636.1 4207794 R 595495 CDS YP_005279637.1 378714744 11778640 complement(4208868..4209470) 1 NC_016902.1 PFAM: integrase family protein; KEGG: eok:G2583_5113 type 1 fimbriae regulatory protein FimB; integrase family protein 4209470 11778640 EKO11_4003 Escherichia coli KO11FL integrase family protein YP_005279637.1 4208868 R 595495 CDS YP_005279638.1 378714745 11778642 4210926..4211642 1 NC_016902.1 PFAM: Oligogalacturonate-specific porin; KEGG: ssn:SSON_4473 hypothetical protein; Oligogalacturonate-specific porin 4211642 11778642 EKO11_4005 Escherichia coli KO11FL Oligogalacturonate-specific porin YP_005279638.1 4210926 D 595495 CDS YP_005279639.1 378714746 11778643 4211662..4212768 1 NC_016902.1 KEGG: eoi:ECO111_5164 N-acetylneuraminic acid mutarotase; TIGRFAM: mutatrotase, YjhT family; PFAM: Kelch repeat type 1-containing protein; Kelch repeat type 2-containing protein; mutarotase, YjhT family 4212768 11778643 EKO11_4006 Escherichia coli KO11FL mutarotase, YjhT family YP_005279639.1 4211662 D 595495 CDS YP_005279640.1 378714747 11778644 4212833..4213813 1 NC_016902.1 PFAM: protein of unknown function DUF303 acetylesterase; KEGG: eoh:ECO103_5090 hypothetical protein; hypothetical protein 4213813 11778644 EKO11_4007 Escherichia coli KO11FL hypothetical protein YP_005279640.1 4212833 D 595495 CDS YP_005279641.1 378714748 11778645 4214025..4214897 1 NC_016902.1 KEGG: eoi:ECO111_5162 putative restriction endonuclease; putative restriction endonuclease 4214897 11778645 EKO11_4008 Escherichia coli KO11FL putative restriction endonuclease YP_005279641.1 4214025 D 595495 CDS YP_005279642.1 378714749 11778646 4215067..4217142 1 NC_016902.1 KEGG: efe:EFER_3105 putative 5-methylcytosine-specific restriction enzyme with GTPase activity; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATPase 4217142 11778646 EKO11_4009 Escherichia coli KO11FL ATPase YP_005279642.1 4215067 D 595495 CDS YP_005279643.1 378714750 11778647 4217135..4218478 1 NC_016902.1 PFAM: 5-methylcytosine restriction system component-like protein; KEGG: efe:EFER_3104 putative 5-methylcytosine restriction system component; 5-methylcytosine restriction system component-like protein 4218478 11778647 EKO11_4010 Escherichia coli KO11FL 5-methylcytosine restriction system component-like protein YP_005279643.1 4217135 D 595495 CDS YP_005279644.1 378714751 11778648 4218475..4218861 1 NC_016902.1 KEGG: efe:EFER_3103 hypothetical protein; hypothetical protein 4218861 11778648 EKO11_4011 Escherichia coli KO11FL hypothetical protein YP_005279644.1 4218475 D 595495 CDS YP_005279645.1 378714752 11778649 4218912..4221059 1 NC_016902.1 PFAM: N-6 DNA methylase; KEGG: efe:EFER_3102 putative type I restriction-modification system methyltransferase subunit; N-6 DNA methylase 4221059 11778649 EKO11_4012 Escherichia coli KO11FL N-6 DNA methylase YP_005279645.1 4218912 D 595495 CDS YP_005279646.1 378714753 11778650 4221059..4222585 1 NC_016902.1 KEGG: efe:EFER_3101 putative restriction modification system DNA specificity domain; putative restriction modification system DNA specificity domain protein 4222585 11778650 EKO11_4013 Escherichia coli KO11FL putative restriction modification system DNA specificity domain protein YP_005279646.1 4221059 D 595495 CDS YP_005279647.1 378714754 11778651 4222603..4223889 1 NC_016902.1 KEGG: efe:EFER_3100 hypothetical protein; hypothetical protein 4223889 11778651 EKO11_4014 Escherichia coli KO11FL hypothetical protein YP_005279647.1 4222603 D 595495 CDS YP_005279648.1 378714755 11778652 4223886..4228172 1 NC_016902.1 KEGG: efe:EFER_3099 hypothetical protein; hypothetical protein 4228172 11778652 EKO11_4015 Escherichia coli KO11FL hypothetical protein YP_005279648.1 4223886 D 595495 CDS YP_005279649.1 378714756 11778653 4228183..4229031 1 NC_016902.1 KEGG: efe:EFER_3098 hypothetical protein; hypothetical protein 4229031 11778653 EKO11_4016 Escherichia coli KO11FL hypothetical protein YP_005279649.1 4228183 D 595495 CDS YP_005279650.1 378714757 11779750 4229034..4230191 1 NC_016902.1 KEGG: efe:EFER_3097 hypothetical protein; hypothetical protein 4230191 11779750 EKO11_4017 Escherichia coli KO11FL hypothetical protein YP_005279650.1 4229034 D 595495 CDS YP_005279651.1 378714758 11778654 4230181..4231866 1 NC_016902.1 PFAM: HerA-ATP synthase, barrel domain; KEGG: efe:EFER_3096 putative nucleoside triphosphate hydrolase; HerA-ATP synthase, barrel domain-containing protein 4231866 11778654 EKO11_4018 Escherichia coli KO11FL HerA-ATP synthase, barrel domain-containing protein YP_005279651.1 4230181 D 595495 CDS YP_005279652.1 378714759 11778655 4231874..4232416 1 NC_016902.1 KEGG: efe:EFER_3095 hypothetical protein; hypothetical protein 4232416 11778655 EKO11_4019 Escherichia coli KO11FL hypothetical protein YP_005279652.1 4231874 D 595495 CDS YP_005279653.1 378714760 11779751 4232413..4233882 1 NC_016902.1 KEGG: efe:EFER_3094 putative protein kinase from phage origin; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; serine/threonine protein kinase 4233882 11779751 EKO11_4020 Escherichia coli KO11FL serine/threonine protein kinase YP_005279653.1 4232413 D 595495 CDS YP_005279654.1 378714761 11778656 complement(4234082..4235347) 1 NC_016902.1 PFAM: integrase family protein; KEGG: kpe:KPK_4978 site-specific recombinase, phage integrase family; integrase family protein 4235347 11778656 EKO11_4021 Escherichia coli KO11FL integrase family protein YP_005279654.1 4234082 R 595495 CDS YP_005279655.1 378714762 11779752 complement(4235740..4236687) 1 NC_016902.1 PFAM: Domain of unknown function DUF1814; KEGG: pay:PAU_03952 hypothetical protein; hypothetical protein 4236687 11779752 EKO11_4022 Escherichia coli KO11FL hypothetical protein YP_005279655.1 4235740 R 595495 CDS YP_005279656.1 378714763 11778657 complement(4236680..4237075) 1 NC_016902.1 KEGG: pay:PAU_03953 hypothetical protein; hypothetical protein 4237075 11778657 EKO11_4023 Escherichia coli KO11FL hypothetical protein YP_005279656.1 4236680 R 595495 CDS YP_005279657.1 378714764 11778658 complement(4237145..4237978) 1 NC_016902.1 KEGG: plu:plu0136 hypothetical protein; hypothetical protein 4237978 11778658 EKO11_4024 Escherichia coli KO11FL hypothetical protein YP_005279657.1 4237145 R 595495 CDS YP_005279658.1 378714765 11778659 complement(4238093..4238434) 1 NC_016902.1 PFAM: protein of unknown function DUF1219; KEGG: ebw:BWG_0226 CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system; hypothetical protein 4238434 11778659 EKO11_4025 Escherichia coli KO11FL hypothetical protein YP_005279658.1 4238093 R 595495 CDS YP_005279659.1 378714766 11778660 complement(4238465..4238800) 1 NC_016902.1 KEGG: sfx:S3203 putative structural protein; manually curated; PFAM: YagBYeeUYfjZ family protein; YagBYeeUYfjZ family protein 4238800 11778660 EKO11_4026 Escherichia coli KO11FL YagBYeeUYfjZ family protein YP_005279659.1 4238465 R 595495 CDS YP_005279660.1 378714767 11778661 complement(4238800..4239273) 1 NC_016902.1 KEGG: plu:plu0133 hypothetical protein; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein RadC 4239273 11778661 EKO11_4027 Escherichia coli KO11FL DNA repair protein RadC YP_005279660.1 4238800 R 595495 CDS YP_005279661.1 378714768 11778662 complement(4239303..4240121) 1 NC_016902.1 KEGG: pay:PAU_03958 hypothetical protein; hypothetical protein 4240121 11778662 EKO11_4028 Escherichia coli KO11FL hypothetical protein YP_005279661.1 4239303 R 595495 CDS YP_005279662.1 378714769 11778663 complement(4240357..4241310) 1 NC_016902.1 KEGG: sfx:S4826 hypothetical protein; hypothetical protein 4241310 11778663 EKO11_4029 Escherichia coli KO11FL hypothetical protein YP_005279662.1 4240357 R 595495 CDS YP_005279663.1 378714770 11778664 4241903..4242517 1 NC_016902.1 KEGG: eoh:ECO103_4904 hypothetical protein; hypothetical protein 4242517 11778664 EKO11_4030 Escherichia coli KO11FL hypothetical protein YP_005279663.1 4241903 D 595495 CDS YP_005279664.1 378714771 11778665 4242635..4242853 1 NC_016902.1 PFAM: Prophage CP4-57 regulatory; KEGG: ypy:YPK_3140 phage transcriptional regulator, AlpA; phage transcriptional regulator, AlpA 4242853 11778665 EKO11_4031 Escherichia coli KO11FL phage transcriptional regulator, AlpA YP_005279664.1 4242635 D 595495 CDS YP_005279665.1 378714772 11778666 complement(4243074..4243838) 1 NC_016902.1 KEGG: ypy:YPK_3135 hypothetical protein; hypothetical protein 4243838 11778666 EKO11_4032 Escherichia coli KO11FL hypothetical protein YP_005279665.1 4243074 R 595495 CDS YP_005279666.1 378714773 11778667 complement(4243851..4244864) 1 NC_016902.1 PFAM: GTP-binding protein HSR1-related; KEGG: xbo:XBJ1_1847 putative CP4-6 prophage; GTP-binding factor; GTP-binding protein HSR1-like protein 4244864 11778667 EKO11_4033 Escherichia coli KO11FL GTP-binding protein HSR1-like protein YP_005279666.1 4243851 R 595495 CDS YP_005279667.1 378714774 11778668 complement(4244903..4245586) 1 NC_016902.1 KEGG: pwa:Pecwa_1387 regulatory protein DeoR; regulatory protein DeoR 4245586 11778668 EKO11_4034 Escherichia coli KO11FL regulatory protein DeoR YP_005279667.1 4244903 R 595495 CDS YP_005279668.1 378714775 11778670 4246163..4249576 1 NC_016902.1 KEGG: sbc:SbBS512_E4808 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase; type III restriction protein res subunit 4249576 11778670 EKO11_4036 Escherichia coli KO11FL type III restriction protein res subunit YP_005279668.1 4246163 D 595495 CDS YP_005279669.1 378714776 11778671 4249640..4251274 1 NC_016902.1 PFAM: N-6 DNA methylase; KEGG: seh:SeHA_C4713 N-6 DNA methylase; N-6 DNA methylase 4251274 11778671 EKO11_4037 Escherichia coli KO11FL N-6 DNA methylase YP_005279669.1 4249640 D 595495 CDS YP_005279670.1 378714777 11778672 4251283..4252449 1 NC_016902.1 KEGG: mar:MAE_56980 restriction modification system DNA specificity subunit; manually curated; PFAM: restriction modification system DNA specificity domain; restriction modification system DNA specificity domain-containing protein 4252449 11778672 EKO11_4038 Escherichia coli KO11FL restriction modification system DNA specificity domain-containing protein YP_005279670.1 4251283 D 595495 CDS YP_005279671.1 378714778 11778673 4252644..4254392 1 NC_016902.1 KEGG: pat:Patl_3558 hypothetical protein; hypothetical protein 4254392 11778673 EKO11_4039 Escherichia coli KO11FL hypothetical protein YP_005279671.1 4252644 D 595495 CDS YP_005279672.1 378714779 11778674 4254385..4254651 1 NC_016902.1 KEGG: pcb:PC000645.03.0 helicase; helicase 4254651 11778674 EKO11_4040 Escherichia coli KO11FL helicase YP_005279672.1 4254385 D 595495 CDS YP_005279673.1 378714780 11779753 4254793..4255758 1 NC_016902.1 KEGG: sua:Saut_1187 5'-nucleotidase; PFAM: 5-nucleotidase; 5'-nucleotidase 4255758 11779753 EKO11_4041 Escherichia coli KO11FL 5'-nucleotidase YP_005279673.1 4254793 D 595495 CDS YP_005279674.1 378714781 11778675 complement(4255836..4256711) 1 NC_016902.1 KEGG: stt:t4547 hypothetical protein; hypothetical protein 4256711 11778675 EKO11_4042 Escherichia coli KO11FL hypothetical protein YP_005279674.1 4255836 R 595495 CDS YP_005279675.1 378714782 11778676 complement(4256927..4258195) 1 NC_016902.1 PFAM: integrase family protein; KEGG: sbc:SbBS512_E4814 site-specific recombinase, phage integrase family protein; integrase family protein 4258195 11778676 EKO11_4043 Escherichia coli KO11FL integrase family protein YP_005279675.1 4256927 R 595495 CDS YP_005279676.1 378714783 11778677 4258676..4259695 1 NC_016902.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ebw:BWG_3975 putative alcohol dehydrogenase, Zn-dependent and NAD(P)-binding; alcohol dehydrogenase GroES domain-containing protein 4259695 11778677 EKO11_4044 Escherichia coli KO11FL alcohol dehydrogenase GroES domain-containing protein YP_005279676.1 4258676 D 595495 CDS YP_005279677.1 378714784 11778678 complement(4259699..4260262) 1 NC_016902.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: ebd:ECBD_3768 D-gluconate kinase; PFAM: shikimate kinase; thermoresistant glucokinase family carbohydrate kinase 4260262 11778678 EKO11_4045 Escherichia coli KO11FL thermoresistant glucokinase family carbohydrate kinase YP_005279677.1 4259699 R 595495 CDS YP_005279678.1 378714785 11778679 4260479..4261510 1 NC_016902.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ebd:ECBD_3769 L-idonate 5-dehydrogenase; alcohol dehydrogenase 4261510 11778679 EKO11_4046 Escherichia coli KO11FL alcohol dehydrogenase YP_005279678.1 4260479 D 595495 CDS YP_005279679.1 378714786 11778680 4261534..4262298 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ebd:ECBD_3770 gluconate 5-dehydrogenase; short-chain dehydrogenase/reductase SDR 4262298 11778680 EKO11_4047 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005279679.1 4261534 D 595495 CDS YP_005279680.1 378714787 11778681 4262363..4263682 1 NC_016902.1 KEGG: ebw:BWG_3971 L-idonate and D-gluconate transporter; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; gluconate transporter 4263682 11778681 EKO11_4048 Escherichia coli KO11FL gluconate transporter YP_005279680.1 4262363 D 595495 CDS YP_005279681.1 378714788 11778682 4263749..4264747 1 NC_016902.1 KEGG: ebd:ECBD_3772 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator 4264747 11778682 EKO11_4049 Escherichia coli KO11FL LacI family transcriptional regulator YP_005279681.1 4263749 D 595495 CDS YP_005279682.1 378714789 11778683 4264825..4266327 1 NC_016902.1 PFAM: protein of unknown function DUF853 NPT hydrolase; KEGG: ebd:ECBD_3773 protein of unknown function DUF853 NPT hydrolase putative; hypothetical protein 4266327 11778683 EKO11_4050 Escherichia coli KO11FL hypothetical protein YP_005279682.1 4264825 D 595495 CDS YP_005279683.1 378714790 11778684 complement(4266446..4267528) 1 NC_016902.1 PFAM: permease YjgP/YjgQ family protein; KEGG: ebd:ECBD_3774 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 4267528 11778684 EKO11_4051 Escherichia coli KO11FL YjgP/YjgQ family permease YP_005279683.1 4266446 R 595495 CDS YP_005279684.1 378714791 11778685 complement(4267528..4268628) 1 NC_016902.1 KEGG: sbo:SBO_4179 hypothetical protein; manually curated; PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 4268628 11778685 EKO11_4052 Escherichia coli KO11FL YjgP/YjgQ family permease YP_005279684.1 4267528 R 595495 CDS YP_005279685.1 378714792 11778686 4268895..4270406 1 NC_016902.1 KEGG: ssn:SSON_4445 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein; leucyl aminopeptidase 4270406 11778686 EKO11_4053 Escherichia coli KO11FL leucyl aminopeptidase YP_005279685.1 4268895 D 595495 CDS YP_005279686.1 378714793 11778687 4270540..4270983 1 NC_016902.1 manually curated; KEGG: sdy:SDY_4283 DNA polymerase III subunit chi; PFAM: DNA polymerase III chi subunit HolC; DNA-directed DNA polymerase 4270983 11778687 EKO11_4054 Escherichia coli KO11FL DNA-directed DNA polymerase YP_005279686.1 4270540 D 595495 CDS YP_005279687.1 378714794 11778688 4270983..4273838 1 NC_016902.1 KEGG: eoh:ECO103_5054 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; valyl-tRNA synthetase 4273838 11778688 EKO11_4055 Escherichia coli KO11FL valyl-tRNA synthetase YP_005279687.1 4270983 D 595495 CDS YP_005279688.1 378714795 11778689 complement(4273894..4275090) 1 NC_016902.1 PFAM: protein of unknown function DUF898 transmembrane; KEGG: eoh:ECO103_5053 hypothetical protein; hypothetical protein 4275090 11778689 EKO11_4056 Escherichia coli KO11FL hypothetical protein YP_005279688.1 4273894 R 595495 CDS YP_005279689.1 378714796 11778690 4275283..4275786 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eoi:ECO111_5140 putative acetyltransferase; N-acetyltransferase GCN5 4275786 11778690 EKO11_4057 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005279689.1 4275283 D 595495 CDS YP_005279690.1 378714797 11778691 complement(4275832..4276248) 1 NC_016902.1 PFAM: protein of unknown function DUF1260; KEGG: sdy:SDY_4277 hypothetical protein; hypothetical protein 4276248 11778691 EKO11_4058 Escherichia coli KO11FL hypothetical protein YP_005279690.1 4275832 R 595495 CDS YP_005279691.1 378714798 11778692 4276410..4277414 1 NC_016902.1 TIGRFAM: ornithine carbamoyltransferase; KEGG: sfx:S4496 ornithine carbamoyltransferase subunit I; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; ornithine carbamoyltransferase 4277414 11778692 EKO11_4059 Escherichia coli KO11FL ornithine carbamoyltransferase YP_005279691.1 4276410 D 595495 CDS YP_005279692.1 378714799 11778693 complement(4279198..4279650) 1 NC_016902.1 PFAM: Conserved hypothetical protein CHP00022; KEGG: eok:G2583_5082 hypothetical protein; hypothetical protein 4279650 11778693 EKO11_4061 Escherichia coli KO11FL hypothetical protein YP_005279692.1 4279198 R 595495 CDS YP_005279693.1 378714800 11778694 complement(4279795..4280388) 1 NC_016902.1 PFAM: regulatory protein TetR; KEGG: eoh:ECO103_5046 putative transcriptional regulator; regulatory protein TetR 4280388 11778694 EKO11_4062 Escherichia coli KO11FL regulatory protein TetR YP_005279693.1 4279795 R 595495 CDS YP_005279694.1 378714801 11779756 4280459..4281172 1 NC_016902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eoh:ECO103_5045 oxidoreductase; short-chain dehydrogenase/reductase SDR 4281172 11779756 EKO11_4063 Escherichia coli KO11FL short-chain dehydrogenase/reductase SDR YP_005279694.1 4280459 D 595495 CDS YP_005279695.1 378714802 11778695 4281303..4281698 1 NC_016902.1 PFAM: Endoribonuclease L-PSP; KEGG: ssn:SSON_4428 hypothetical protein; endoribonuclease L-PSP 4281698 11778695 EKO11_4064 Escherichia coli KO11FL endoribonuclease L-PSP YP_005279695.1 4281303 D 595495 CDS YP_005279696.1 378714803 11778696 4281952..4282113 1 NC_016902.1 KEGG: etw:ECSP_5348 pyrBI operon leader peptide; manually curated; PFAM: PyrBI operon leader peptide; PyrBI operon leader peptide 4282113 11778696 EKO11_4065 Escherichia coli KO11FL PyrBI operon leader peptide YP_005279696.1 4281952 D 595495 CDS YP_005279697.1 378714804 11779757 4282117..4283052 1 NC_016902.1 KEGG: sdy:SDY_4264 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate carbamoyltransferase 4283052 11779757 EKO11_4066 Escherichia coli KO11FL aspartate carbamoyltransferase YP_005279697.1 4282117 D 595495 CDS YP_005279698.1 378714805 11778697 4283065..4283526 1 NC_016902.1 KEGG: sbc:SbBS512_E4839 aspartate carbamoyltransferase regulatory subunit; TIGRFAM: aspartate carbamoyltransferase, regulatory subunit; PFAM: Aspartate carbamoyltransferase regulatory subunit-like; aspartate carbamoyltransferase, regulatory subunit 4283526 11778697 EKO11_4067 Escherichia coli KO11FL aspartate carbamoyltransferase, regulatory subunit YP_005279698.1 4283065 D 595495 CDS YP_005279699.1 378714806 11778698 4283599..4283985 1 NC_016902.1 KEGG: sdy:SDY_4262 hypothetical protein; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 4283985 11778698 EKO11_4068 Escherichia coli KO11FL endoribonuclease L-PSP YP_005279699.1 4283599 D 595495 CDS YP_005279700.1 378714807 11778699 complement(4284191..4286887) 1 NC_016902.1 TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: ssn:SSON_4423 magnesium-transporting ATPase MgtA; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; magnesium-translocating P-type ATPase 4286887 11778699 EKO11_4069 Escherichia coli KO11FL magnesium-translocating P-type ATPase YP_005279700.1 4284191 R 595495 CDS YP_005279701.1 378714808 11778700 4287266..4288213 1 NC_016902.1 TIGRFAM: trehalose operon repressor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: eoh:ECO103_5037 trehalose repressor; SMART: regulatory protein LacI; LacI family transcriptional regulator 4288213 11778700 EKO11_4070 Escherichia coli KO11FL LacI family transcriptional regulator YP_005279701.1 4287266 D 595495 CDS YP_005279702.1 378714809 11778701 4288332..4289753 1 NC_016902.1 TIGRFAM: PTS system, trehalose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PTS system, maltose and glucose-specific subfamily, IIC subunit; KEGG: ebd:ECBD_3793 PTS system trehalose(maltose)-specific transporter subunits IIBC; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; PTS system trehalose-specific transporter subunit IIBC 4289753 11778701 EKO11_4071 Escherichia coli KO11FL PTS system trehalose-specific transporter subunit IIBC YP_005279702.1 4288332 D 595495 CDS YP_005279703.1 378714810 11778702 4289803..4291458 1 NC_016902.1 TIGRFAM: alpha,alpha-phosphotrehalase; PFAM: alpha amylase catalytic region; KEGG: sfx:S4513 trehalose-6-phosphate hydrolase; SMART: alpha amylase catalytic sub domain; alpha,alpha-phosphotrehalase 4291458 11778702 EKO11_4072 Escherichia coli KO11FL alpha,alpha-phosphotrehalase YP_005279703.1 4289803 D 595495 CDS YP_005279704.1 378714811 11778703 4291852..4293990 1 NC_016902.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: ebd:ECBD_3796 anaerobic ribonucleoside triphosphate reductase; PFAM: formate C-acetyltransferase glycine radical; ATP-cone domain protein; anaerobic ribonucleoside-triphosphate reductase 4293990 11778703 EKO11_4073 Escherichia coli KO11FL anaerobic ribonucleoside-triphosphate reductase YP_005279704.1 4291852 D 595495 CDS YP_005279705.1 378714812 11779758 4294148..4294612 1 NC_016902.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: ssn:SSON_4418 anaerobic ribonucleotide reductase-activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 4294612 11779758 EKO11_4074 Escherichia coli KO11FL anaerobic ribonucleoside-triphosphate reductase activating protein YP_005279705.1 4294148 D 595495 CDS YP_005279706.1 378714813 11778704 complement(4294657..4295043) 1 NC_016902.1 PFAM: cytochrome b562; KEGG: sfv:SFV_4255 cytochrome b(562); cytochrome b562 4295043 11778704 EKO11_4075 Escherichia coli KO11FL cytochrome b562 YP_005279706.1 4294657 R 595495 CDS YP_005279707.1 378714814 11778705 complement(4295226..4296578) 1 NC_016902.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: eok:G2583_5064 putative peptide maturation protein; peptidase U62 modulator of DNA gyrase 4296578 11778705 EKO11_4076 Escherichia coli KO11FL peptidase U62 modulator of DNA gyrase YP_005279707.1 4295226 R 595495 CDS YP_005279708.1 378714815 11779759 4296672..4297223 1 NC_016902.1 PFAM: protein of unknown function DUF615; KEGG: ssn:SSON_4415 hypothetical protein; hypothetical protein 4297223 11779759 EKO11_4077 Escherichia coli KO11FL hypothetical protein YP_005279708.1 4296672 D 595495 CDS YP_005279709.1 378714816 11778706 complement(4297379..4298752) 1 NC_016902.1 KEGG: ebd:ECBD_3801 UDP-N-acetylmuramate; TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; UDP-N-acetylmuramate 4298752 11778706 EKO11_4078 Escherichia coli KO11FL UDP-N-acetylmuramate YP_005279709.1 4297379 R 595495 CDS YP_005279710.1 378714817 11778707 4298928..4299926 1 NC_016902.1 PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: sdy:SDY_4250 fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase 4299926 11778707 EKO11_4079 Escherichia coli KO11FL inositol phosphatase/fructose-16-bisphosphatase YP_005279710.1 4298928 D 595495 CDS YP_005279711.1 378714818 11778708 complement(4299959..4300954) 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: ebd:ECBD_3803 inner membrane ABC transporter permease protein YjfF; inner-membrane translocator 4300954 11778708 EKO11_4080 Escherichia coli KO11FL inner-membrane translocator YP_005279711.1 4299959 R 595495 CDS YP_005279712.1 378714819 11778709 complement(4300941..4301963) 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: eoi:ECO111_5114 putative sugar transporter subunit; inner-membrane translocator 4301963 11778709 EKO11_4081 Escherichia coli KO11FL inner-membrane translocator YP_005279712.1 4300941 R 595495 CDS YP_005279713.1 378714820 11778710 complement(4301977..4303479) 1 NC_016902.1 KEGG: eoh:ECO103_5025 putative sugar transporter subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4303479 11778710 EKO11_4082 Escherichia coli KO11FL ABC transporter YP_005279713.1 4301977 R 595495 CDS YP_005279714.1 378714821 11778711 complement(4303619..4304575) 1 NC_016902.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E4856 putative sugar ABC transporter, periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator 4304575 11778711 EKO11_4083 Escherichia coli KO11FL periplasmic binding protein/LacI transcriptional regulator YP_005279714.1 4303619 R 595495 CDS YP_005279715.1 378714822 11778712 4304885..4305415 1 NC_016902.1 KEGG: ebd:ECBD_3807 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; inorganic diphosphatase 4305415 11778712 EKO11_4084 Escherichia coli KO11FL inorganic diphosphatase YP_005279715.1 4304885 D 595495 CDS YP_005279716.1 378714823 11778713 complement(4305495..4305845) 1 NC_016902.1 KEGG: eok:G2583_5055 PemK protein 2; manually curated; PFAM: PemK family protein; transcriptional modulator of MazE/toxin MazF 4305845 11778713 EKO11_4085 Escherichia coli KO11FL transcriptional modulator of MazE/toxin MazF YP_005279716.1 4305495 R 595495 CDS YP_005279717.1 378714824 11778714 complement(4305839..4306090) 1 NC_016902.1 PFAM: SpoVT/AbrB domain-containing protein; KEGG: eoh:ECO103_5021 antitoxin ChpS; transcriptional regulator/antitoxin MazE 4306090 11778714 EKO11_4086 Escherichia coli KO11FL transcriptional regulator/antitoxin MazE YP_005279717.1 4305839 R 595495 CDS YP_005279718.1 378714825 11778715 complement(4306303..4306644) 1 NC_016902.1 PFAM: AIG2 family protein; KEGG: sdy:SDY_4459 hypothetical protein; AIG2 family protein 4306644 11778715 EKO11_4087 Escherichia coli KO11FL AIG2 family protein YP_005279718.1 4306303 R 595495 CDS YP_005279719.1 378714826 11778716 complement(4306647..4310426) 1 NC_016902.1 PFAM: protein of unknown function DUF490; KEGG: ssn:SSON_4406 hypothetical protein; hypothetical protein 4310426 11778716 EKO11_4088 Escherichia coli KO11FL hypothetical protein YP_005279719.1 4306647 R 595495 CDS YP_005279720.1 378714827 11778717 complement(4310423..4312156) 1 NC_016902.1 PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; KEGG: sbc:SbBS512_E4861 outer membrane protein, OMP85 family; surface antigen (D15) 4312156 11778717 EKO11_4089 Escherichia coli KO11FL surface antigen (D15) YP_005279720.1 4310423 R 595495 CDS YP_005279721.1 378714828 11778718 4312362..4313000 1 NC_016902.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: ssn:SSON_4404 methionine sulfoxide reductase A; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 4313000 11778718 EKO11_4090 Escherichia coli KO11FL peptide methionine sulfoxide reductase YP_005279721.1 4312362 D 595495 CDS YP_005279722.1 378714829 11778719 4313323..4314666 1 NC_016902.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: ebd:ECBD_3812 protein of unknown function DUF21; hypothetical protein 4314666 11778719 EKO11_4091 Escherichia coli KO11FL hypothetical protein YP_005279722.1 4313323 D 595495 CDS YP_005279723.1 378714830 11778720 complement(4314728..4314934) 1 NC_016902.1 PFAM: protein of unknown function DUF1107; KEGG: sdy:SDY_4454 hypothetical protein; hypothetical protein 4314934 11778720 EKO11_4092 Escherichia coli KO11FL hypothetical protein YP_005279723.1 4314728 R 595495 CDS YP_005279724.1 378714831 11778721 4315259..4315816 1 NC_016902.1 PFAM: Conserved hypothetical protein, YtfJ; KEGG: eoh:ECO103_5014 putative transcriptional regulator; hypothetical protein 4315816 11778721 EKO11_4093 Escherichia coli KO11FL hypothetical protein YP_005279724.1 4315259 D 595495 CDS YP_005279725.1 378714832 11778722 complement(4315806..4316546) 1 NC_016902.1 KEGG: sdy:SDY_4385 adenosine-3'(2'),5'-bisphosphate nucleotidase; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; 3'(2'),5'-bisphosphate nucleotidase 4316546 11778722 EKO11_4094 Escherichia coli KO11FL 3'(2'),5'-bisphosphate nucleotidase YP_005279725.1 4315806 R 595495 CDS YP_005279726.1 378714833 11778723 4316736..4318679 1 NC_016902.1 KEGG: ebw:BWG_3924 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: 5'-Nucleotidase domain-containing protein; metallophosphoesterase; 2,3-cyclic-nucleotide 2'phosphodiesterase 4318679 11778723 EKO11_4095 Escherichia coli KO11FL 2,3-cyclic-nucleotide 2'phosphodiesterase YP_005279726.1 4316736 D 595495 CDS YP_005279727.1 378714834 11778724 complement(4318808..4319188) 1 NC_016902.1 PFAM: helix-turn-helix HxlR type; KEGG: sbc:SbBS512_E4753 putative transcriptional regulator; HxlR family transcriptional regulator 4319188 11778724 EKO11_4096 Escherichia coli KO11FL HxlR family transcriptional regulator YP_005279727.1 4318808 R 595495 CDS YP_005279728.1 378714835 11778725 4319277..4320137 1 NC_016902.1 KEGG: sbo:SBO_4231 putative oxidoreductase; putative oxidoreductase 4320137 11778725 EKO11_4097 Escherichia coli KO11FL putative oxidoreductase YP_005279728.1 4319277 D 595495 CDS YP_005279729.1 378714836 11778726 4320246..4321211 1 NC_016902.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: eoh:ECO103_5009 putative inner membrane protein; hypothetical protein 4321211 11778726 EKO11_4098 Escherichia coli KO11FL hypothetical protein YP_005279729.1 4320246 D 595495 CDS YP_005279730.1 378714837 11778727 4321319..4321981 1 NC_016902.1 KEGG: sdy:SDY_4379 iron-sulfur cluster repair di-iron protein; TIGRFAM: iron-sulfur cluster repair di-iron protein; PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; iron-sulfur cluster repair di-iron protein 4321981 11778727 EKO11_4099 Escherichia coli KO11FL iron-sulfur cluster repair di-iron protein YP_005279730.1 4321319 D 595495 CDS YP_005279731.1 378714838 11778728 complement(4322026..4323438) 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_4378 D-alanine/D-serine/glycine permease; amino acid permease 4323438 11778728 EKO11_4100 Escherichia coli KO11FL amino acid permease YP_005279731.1 4322026 R 595495 CDS YP_005279732.1 378714839 11778729 complement(4323747..4324367) 1 NC_016902.1 KEGG: sfv:SFV_4280 peptidyl-prolyl cis-trans isomerase; PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase 4324367 11778729 EKO11_4101 Escherichia coli KO11FL peptidylprolyl isomerase YP_005279732.1 4323747 R 595495 CDS YP_005279733.1 378714840 11778730 4324585..4325223 1 NC_016902.1 PFAM: Opacity-associated protein A domain protein; KEGG: sdy:SDY_4376 hypothetical protein; Opacity-associated protein A domain protein 4325223 11778730 EKO11_4102 Escherichia coli KO11FL Opacity-associated protein A domain protein YP_005279733.1 4324585 D 595495 CDS YP_005279734.1 378714841 11778732 complement(4325358..4326506) 1 NC_016902.1 KEGG: eoh:ECO103_1983 putative IS609 transposase TnpB; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; transposase, IS605 OrfB family 4326506 11778732 EKO11_4104 Escherichia coli KO11FL transposase, IS605 OrfB family YP_005279734.1 4325358 R 595495 CDS YP_005279735.1 378714842 11778735 4327627..4328421 1 NC_016902.1 KEGG: eoi:ECO111_5010 hypothetical protein; hypothetical protein 4328421 11778735 EKO11_4107 Escherichia coli KO11FL hypothetical protein YP_005279735.1 4327627 D 595495 CDS YP_005279736.1 378714843 11778736 complement(4328492..4328941) 1 NC_016902.1 KEGG: sbc:SbBS512_E4736 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like; 50S ribosomal protein L9 4328941 11778736 EKO11_4108 Escherichia coli KO11FL 50S ribosomal protein L9 YP_005279736.1 4328492 R 595495 CDS YP_005279737.1 378714844 11778737 complement(4328983..4329210) 1 NC_016902.1 KEGG: pam:PANA_3522 RpsR; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; 30S ribosomal protein S18 4329210 11778737 EKO11_4109 Escherichia coli KO11FL 30S ribosomal protein S18 YP_005279737.1 4328983 R 595495 CDS YP_005279738.1 378714845 11779760 complement(4329215..4329529) 1 NC_016902.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sbc:SbBS512_E4734 primosomal replication protein N; ssDNA-binding protein 4329529 11779760 EKO11_4110 Escherichia coli KO11FL ssDNA-binding protein YP_005279738.1 4329215 R 595495 CDS YP_005279739.1 378714846 11778738 complement(4329536..4329931) 1 NC_016902.1 KEGG: sdy:SDY_4369 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; 30S ribosomal protein S6 4329931 11778738 EKO11_4111 Escherichia coli KO11FL 30S ribosomal protein S6 YP_005279739.1 4329536 R 595495 CDS YP_005279740.1 378714847 11778739 4330258..4330533 1 NC_016902.1 PFAM: protein of unknown function DUF1471; KEGG: sbc:SbBS512_E4732 hypothetical protein; hypothetical protein 4330533 11778739 EKO11_4112 Escherichia coli KO11FL hypothetical protein YP_005279740.1 4330258 D 595495 CDS YP_005279741.1 378714848 11779761 complement(4330608..4331159) 1 NC_016902.1 PFAM: protein of unknown function DUF1440; KEGG: sbo:SBO_4256 hypothetical protein; hypothetical protein 4331159 11779761 EKO11_4113 Escherichia coli KO11FL hypothetical protein YP_005279741.1 4330608 R 595495 CDS YP_005279742.1 378714849 11778740 complement(4331254..4331940) 1 NC_016902.1 PFAM: class II aldolase/adducin family protein; KEGG: eok:G2583_5025 L-ribulose-5-phosphate 4-epimerase UlaF; class II aldolase/adducin family protein 4331940 11778740 EKO11_4114 Escherichia coli KO11FL class II aldolase/adducin family protein YP_005279742.1 4331254 R 595495 CDS YP_005279743.1 378714850 11778741 complement(4331940..4332794) 1 NC_016902.1 TIGRFAM: hexulose-6-phosphate isomerase; KEGG: sbo:SBO_4258 L-xylulose 5-phosphate 3-epimerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; hexulose-6-phosphate isomerase 4332794 11778741 EKO11_4115 Escherichia coli KO11FL hexulose-6-phosphate isomerase YP_005279743.1 4331940 R 595495 CDS YP_005279744.1 378714851 11779762 complement(4332804..4333454) 1 NC_016902.1 PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sbo:SBO_4259 3-keto-L-gulonate-6-phosphate decarboxylase; Orotidine 5'-phosphate decarboxylase 4333454 11779762 EKO11_4116 Escherichia coli KO11FL Orotidine 5'-phosphate decarboxylase YP_005279744.1 4332804 R 595495 CDS YP_005279745.1 378714852 11778742 complement(4333468..4333932) 1 NC_016902.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sbo:SBO_4260 L-ascorbate-specific enzyme IIA component of PTS; putative PTS IIA-like nitrogen-regulatory protein PtsN 4333932 11778742 EKO11_4117 Escherichia coli KO11FL putative PTS IIA-like nitrogen-regulatory protein PtsN YP_005279745.1 4333468 R 595495 CDS YP_005279746.1 378714853 11779763 complement(4334263..4335717) 1 NC_016902.1 manually curated; KEGG: sek:SSPA3900 PTS system ascorbate-specific transporter subunit IIC; PTS system ascorbate-specific transporter subunit IIC 4335717 11779763 EKO11_4119 Escherichia coli KO11FL PTS system ascorbate-specific transporter subunit IIC YP_005279746.1 4334263 R 595495 CDS YP_005279747.1 378714854 11778744 4336015..4337079 1 NC_016902.1 KEGG: ssn:SSON_4374 putative L-ascorbate 6-phosphate lactonase; putative L-ascorbate 6-phosphate lactonase 4337079 11778744 EKO11_4120 Escherichia coli KO11FL putative L-ascorbate 6-phosphate lactonase YP_005279747.1 4336015 D 595495 CDS YP_005279748.1 378714855 11778745 4337187..4337942 1 NC_016902.1 KEGG: sbc:SbBS512_E4720 transcriptional repressor UlaR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 4337942 11778745 EKO11_4121 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005279748.1 4337187 D 595495 CDS YP_005279749.1 378714856 11779764 complement(4337939..4338688) 1 NC_016902.1 KEGG: sbo:SBO_4265 esterase; esterase 4338688 11779764 EKO11_4122 Escherichia coli KO11FL esterase YP_005279749.1 4337939 R 595495 CDS YP_005279750.1 378714857 11778746 4338870..4339199 1 NC_016902.1 PFAM: protein of unknown function DUF1471; KEGG: sbc:SbBS512_E4719 putative biofilm stress and motility protein A; hypothetical protein 4339199 11778746 EKO11_4123 Escherichia coli KO11FL hypothetical protein YP_005279750.1 4338870 D 595495 CDS YP_005279751.1 378714858 11778747 4339348..4339623 1 NC_016902.1 PFAM: protein of unknown function DUF1471; KEGG: sbo:SBO_4267 hypothetical protein; hypothetical protein 4339623 11778747 EKO11_4124 Escherichia coli KO11FL hypothetical protein YP_005279751.1 4339348 D 595495 CDS YP_005279752.1 378714859 11778748 complement(4339740..4341365) 1 NC_016902.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: eoh:ECO103_4980 isovaleryl CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4341365 11778748 EKO11_4125 Escherichia coli KO11FL acyl-CoA dehydrogenase domain-containing protein YP_005279752.1 4339740 R 595495 CDS YP_005279753.1 378714860 11778749 complement(4341449..4342612) 1 NC_016902.1 PFAM: glutathionylspermidine synthase; KEGG: ebd:ECBD_3848 glutathionylspermidine synthase; glutathionylspermidine synthase 4342612 11778749 EKO11_4126 Escherichia coli KO11FL glutathionylspermidine synthase YP_005279753.1 4341449 R 595495 CDS YP_005279754.1 378714861 11778750 complement(4342615..4343253) 1 NC_016902.1 PFAM: protein of unknown function DUF1190; KEGG: eoh:ECO103_4978 hypothetical protein; hypothetical protein 4343253 11778750 EKO11_4127 Escherichia coli KO11FL hypothetical protein YP_005279754.1 4342615 R 595495 CDS YP_005279755.1 378714862 11778751 complement(4343263..4343661) 1 NC_016902.1 PFAM: protein of unknown function DUF350; KEGG: ebd:ECBD_3850 protein of unknown function DUF350; hypothetical protein 4343661 11778751 EKO11_4128 Escherichia coli KO11FL hypothetical protein YP_005279755.1 4343263 R 595495 CDS YP_005279756.1 378714863 11778752 complement(4343679..4344338) 1 NC_016902.1 PFAM: Protein of unknown function DUF2491; KEGG: eoh:ECO103_4976 hypothetical protein; hypothetical protein 4344338 11778752 EKO11_4129 Escherichia coli KO11FL hypothetical protein YP_005279756.1 4343679 R 595495 CDS YP_005279757.1 378714864 11778753 complement(4344389..4345087) 1 NC_016902.1 PFAM: PspA/IM30 family protein; KEGG: ebd:ECBD_3852 phage shock protein A, PspA; phage shock protein A, PspA 4345087 11778753 EKO11_4130 Escherichia coli KO11FL phage shock protein A, PspA YP_005279757.1 4344389 R 595495 CDS YP_005279758.1 378714865 11778754 complement(4345106..4345507) 1 NC_016902.1 PFAM: Protein of unknown function DUF2170; KEGG: eoi:ECO111_5033 hypothetical protein; hypothetical protein 4345507 11778754 EKO11_4131 Escherichia coli KO11FL hypothetical protein YP_005279758.1 4345106 R 595495 CDS YP_005279759.1 378714866 11778755 complement(4345634..4346365) 1 NC_016902.1 KEGG: ssn:SSON_4365 23S rRNA (guanosine-2'-O-)-methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; TrmH family RNA methyltransferase 4346365 11778755 EKO11_4132 Escherichia coli KO11FL TrmH family RNA methyltransferase YP_005279759.1 4345634 R 595495 CDS YP_005279760.1 378714867 11778756 complement(4346545..4348986) 1 NC_016902.1 SMART: Cold shock protein; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; KEGG: sfv:SFV_4337 exoribonuclease R; PFAM: ribonuclease II; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; RNA binding S1 domain protein; ribonuclease R 4348986 11778756 EKO11_4133 Escherichia coli KO11FL ribonuclease R YP_005279760.1 4346545 R 595495 CDS YP_005279761.1 378714868 11778757 complement(4349025..4349450) 1 NC_016902.1 KEGG: ebd:ECBD_3856 transcriptional repressor NsrR; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; AsnC family transcriptional regulator 4349450 11778757 EKO11_4134 Escherichia coli KO11FL AsnC family transcriptional regulator YP_005279761.1 4349025 R 595495 CDS YP_005279762.1 378714869 11778758 complement(4349655..4350953) 1 NC_016902.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: sdy:SDY_4412 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; adenylosuccinate synthetase 4350953 11778758 EKO11_4135 Escherichia coli KO11FL adenylosuccinate synthetase YP_005279762.1 4349655 R 595495 CDS YP_005279763.1 378714870 11778759 complement(4351057..4351254) 1 NC_016902.1 PFAM: Protein of unknown function DUF2065; KEGG: sdy:SDY_4413 hypothetical protein; hypothetical protein 4351254 11778759 EKO11_4136 Escherichia coli KO11FL hypothetical protein YP_005279763.1 4351057 R 595495 CDS YP_005279764.1 378714871 11778760 complement(4351336..4352340) 1 NC_016902.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: sbc:SbBS512_E4706 FtsH protease regulator HflC; SMART: band 7 protein; HflC protein 4352340 11778760 EKO11_4137 Escherichia coli KO11FL HflC protein YP_005279764.1 4351336 R 595495 CDS YP_005279765.1 378714872 11778761 complement(4352343..4353602) 1 NC_016902.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: sbc:SbBS512_E4705 FtsH protease regulator HflK; SMART: band 7 protein; HflK protein 4353602 11778761 EKO11_4138 Escherichia coli KO11FL HflK protein YP_005279765.1 4352343 R 595495 CDS YP_005279766.1 378714873 11779765 complement(4353688..4354968) 1 NC_016902.1 KEGG: ssn:SSON_4358 putative GTPase HflX; TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; GTP-binding proten HflX 4354968 11779765 EKO11_4139 Escherichia coli KO11FL GTP-binding proten HflX YP_005279766.1 4353688 R 595495 CDS YP_005279767.1 378714874 11778762 complement(4355044..4355352) 1 NC_016902.1 KEGG: sbo:SBO_4284 RNA-binding protein Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; RNA chaperone Hfq 4355352 11778762 EKO11_4140 Escherichia coli KO11FL RNA chaperone Hfq YP_005279767.1 4355044 R 595495 CDS YP_005279768.1 378714875 11778763 complement(4355438..4356388) 1 NC_016902.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: sbo:SBO_4285 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 4356388 11778763 EKO11_4141 Escherichia coli KO11FL tRNA delta(2)-isopentenylpyrophosphate transferase YP_005279768.1 4355438 R 595495 CDS YP_005279769.1 378714876 11778764 complement(4356381..4358228) 1 NC_016902.1 KEGG: eoh:ECO103_4963 DNA mismatch repair protein; TIGRFAM: DNA mismatch repair protein MutL; PFAM: DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; MutL dimerisation; DNA mismatch repair protein MutL 4358228 11778764 EKO11_4142 Escherichia coli KO11FL DNA mismatch repair protein MutL YP_005279769.1 4356381 R 595495 CDS YP_005279770.1 378714877 11778765 complement(4358238..4359575) 1 NC_016902.1 KEGG: ssn:SSON_4354 N-acetylmuramoyl-L-alanine amidase II; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 4359575 11778765 EKO11_4143 Escherichia coli KO11FL cell wall hydrolase/autolysin YP_005279770.1 4358238 R 595495 CDS YP_005279771.1 378714878 11778766 complement(4359594..4360055) 1 NC_016902.1 PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: sdy:SDY_4421 putative ATPase; hypothetical protein 4360055 11778766 EKO11_4144 Escherichia coli KO11FL hypothetical protein YP_005279771.1 4359594 R 595495 CDS YP_005279772.1 378714879 11778767 complement(4360027..4361559) 1 NC_016902.1 KEGG: ebw:BWG_3879 hypothetical protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain-containing protein; carbohydrate kinase 4361559 11778767 EKO11_4145 Escherichia coli KO11FL carbohydrate kinase YP_005279772.1 4360027 R 595495 CDS YP_005279773.1 378714880 11778768 4361573..4362712 1 NC_016902.1 manually curated; TIGRFAM: iron-sulfur cluster binding protein; KEGG: sbc:SbBS512_E4697 iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; iron-sulfur cluster binding protein 4362712 11778768 EKO11_4146 Escherichia coli KO11FL iron-sulfur cluster binding protein YP_005279773.1 4361573 D 595495 CDS YP_005279774.1 378714881 11778772 complement(4363491..4364036) 1 NC_016902.1 KEGG: sdy:SDY_4430 oligoribonuclease; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; Exonuclease RNase T and DNA polymerase III 4364036 11778772 EKO11_4147 Escherichia coli KO11FL Exonuclease RNase T and DNA polymerase III YP_005279774.1 4363491 R 595495 CDS YP_005279775.1 378714882 11778773 4364131..4365183 1 NC_016902.1 KEGG: ebw:BWG_3876 ribosome-associated GTPase; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; ribosome small subunit-dependent GTPase A 4365183 11778773 EKO11_4148 Escherichia coli KO11FL ribosome small subunit-dependent GTPase A YP_005279775.1 4364131 D 595495 CDS YP_005279776.1 378714883 11778774 4365280..4366248 1 NC_016902.1 KEGG: sbc:SbBS512_E4692 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase 4366248 11778774 EKO11_4149 Escherichia coli KO11FL phosphatidylserine decarboxylase YP_005279776.1 4365280 D 595495 CDS YP_005279777.1 378714884 11778775 4366270..4369593 1 NC_016902.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ebd:ECBD_3872 hypothetical protein; mechanosensitive ion channel MscS 4369593 11778775 EKO11_4150 Escherichia coli KO11FL mechanosensitive ion channel MscS YP_005279777.1 4366270 D 595495 CDS YP_005279778.1 378714885 11778776 complement(4369622..4369924) 1 NC_016902.1 KEGG: eoi:ECO111_5053 hypothetical protein; hypothetical protein 4369924 11778776 EKO11_4151 Escherichia coli KO11FL hypothetical protein YP_005279778.1 4369622 R 595495 CDS YP_005279779.1 378714886 11778777 complement(4369933..4370247) 1 NC_016902.1 KEGG: eoi:ECO111_5054 hypothetical protein; hypothetical protein 4370247 11778777 EKO11_4152 Escherichia coli KO11FL hypothetical protein YP_005279779.1 4369933 R 595495 CDS YP_005279780.1 378714887 11778778 complement(4370299..4371843) 1 NC_016902.1 KEGG: eok:G2583_4985 hypothetical protein; manually curated; PFAM: amino acid permease-associated region; amino acid permease 4371843 11778778 EKO11_4153 Escherichia coli KO11FL amino acid permease YP_005279780.1 4370299 R 595495 CDS YP_005279781.1 378714888 11778779 complement(4372020..4372997) 1 NC_016902.1 KEGG: sdy:SDY_4399 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase class II (D K and N); lysyl-tRNA synthetase-like protein GenX 4372997 11778779 EKO11_4154 Escherichia coli KO11FL lysyl-tRNA synthetase-like protein GenX YP_005279781.1 4372020 R 595495 CDS YP_005279782.1 378714889 11778780 4373322..4373501 1 NC_016902.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: cko:CKO_03678 fumarate reductase flavoprotein subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 4373501 11778780 EKO11_4155 Escherichia coli KO11FL fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_005279782.1 4373322 D 595495 CDS YP_005279783.1 378714890 11779766 complement(4373563..4374411) 1 NC_016902.1 PFAM: MuA-transposase/repressor protein CI DNA-binding; Mu transposase; KEGG: ebw:BWG_3690 transposase; MuA-transposase/repressor protein CI DNA-binding protein 4374411 11779766 EKO11_4156 Escherichia coli KO11FL MuA-transposase/repressor protein CI DNA-binding protein YP_005279783.1 4373563 R 595495 CDS YP_005279784.1 378714891 11779767 complement(4374413..4374640) 1 NC_016902.1 KEGG: pay:PAU_01004 putative phage transcriptional regulator; putative transcriptional regulator, Nlp 4374640 11779767 EKO11_4157 Escherichia coli KO11FL putative transcriptional regulator, Nlp YP_005279784.1 4374413 R 595495 CDS YP_005279785.1 378714892 11778781 4374810..4375400 1 NC_016902.1 PFAM: MuA-transposase/repressor protein CI DNA-binding; KEGG: ebw:BWG_3689 repressor protein CI; MuA-transposase/repressor protein CI DNA-binding protein 4375400 11778781 EKO11_4158 Escherichia coli KO11FL MuA-transposase/repressor protein CI DNA-binding protein YP_005279785.1 4374810 D 595495 CDS YP_005279786.1 378714893 11778782 4375832..4377412 1 NC_016902.1 manually curated; TIGRFAM: fumarate reductase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; KEGG: sdy:SDY_4398 fumarate reductase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase flavoprotein subunit 4377412 11778782 EKO11_4159 Escherichia coli KO11FL fumarate reductase flavoprotein subunit YP_005279786.1 4375832 D 595495 CDS YP_005279787.1 378714894 11778783 4377405..4378139 1 NC_016902.1 KEGG: sbc:SbBS512_E4685 fumarate reductase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 4378139 11778783 EKO11_4160 Escherichia coli KO11FL succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_005279787.1 4377405 D 595495 CDS YP_005279788.1 378714895 11778784 4378150..4378545 1 NC_016902.1 PFAM: fumarate reductase subunit C; KEGG: sbc:SbBS512_E4684 fumarate reductase subunit C; fumarate reductase subunit C 4378545 11778784 EKO11_4161 Escherichia coli KO11FL fumarate reductase subunit C YP_005279788.1 4378150 D 595495 CDS YP_005279789.1 378714896 11779768 4378556..4378915 1 NC_016902.1 PFAM: fumarate reductase D subunit; KEGG: sdy:SDY_4395 fumarate reductase subunit D; fumarate reductase D subunit 4378915 11779768 EKO11_4162 Escherichia coli KO11FL fumarate reductase D subunit YP_005279789.1 4378556 D 595495 CDS YP_005279790.1 378714897 11778785 4378978..4380111 1 NC_016902.1 PFAM: beta-lactamase; KEGG: ebw:BWG_3865 beta-lactamase; beta-lactamase 4380111 11778785 EKO11_4163 Escherichia coli KO11FL beta-lactamase YP_005279790.1 4378978 D 595495 CDS YP_005279791.1 378714898 11778786 4380200..4380733 1 NC_016902.1 PFAM: Lipocalin family protein; KEGG: ebd:ECBD_3880 outer membrane lipoprotein Blc; lipocalin family protein 4380733 11778786 EKO11_4164 Escherichia coli KO11FL lipocalin family protein YP_005279791.1 4380200 D 595495 CDS YP_005279792.1 378714899 11778787 complement(4380730..4381197) 1 NC_016902.1 KEGG: sbo:SBO_4308 SugE; manually curated; PFAM: small multidrug resistance protein; small multidrug resistance protein 4381197 11778787 EKO11_4165 Escherichia coli KO11FL small multidrug resistance protein YP_005279792.1 4380730 R 595495 CDS YP_005279793.1 378714900 11778788 complement(4381223..4381369) 1 NC_016902.1 PFAM: Entericidin EcnAB; KEGG: sbc:SbBS512_E4679 entericidin B membrane lipoprotein; entericidin EcnAB 4381369 11778788 EKO11_4166 Escherichia coli KO11FL entericidin EcnAB YP_005279793.1 4381223 R 595495 CDS YP_005279794.1 378714901 11778789 complement(4381480..4381605) 1 NC_016902.1 PFAM: Entericidin EcnAB; KEGG: sdy:SDY_4391 entericidin A; entericidin EcnAB 4381605 11778789 EKO11_4167 Escherichia coli KO11FL entericidin EcnAB YP_005279794.1 4381480 R 595495 CDS YP_005279795.1 378714902 11778790 complement(4381657..4382223) 1 NC_016902.1 KEGG: sdy:SDY_4390 elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein; translation elongation factor P 4382223 11778790 EKO11_4168 Escherichia coli KO11FL translation elongation factor P YP_005279795.1 4381657 R 595495 CDS YP_005279796.1 378714903 11778791 4382265..4383293 1 NC_016902.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: ebw:BWG_3859 putative lysine aminomutase; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 4383293 11778791 EKO11_4169 Escherichia coli KO11FL lysine 2,3-aminomutase YodO family protein YP_005279796.1 4382265 D 595495 CDS YP_005279797.1 378714904 11778792 4383459..4384667 1 NC_016902.1 PFAM: transposase IS4 family protein; KEGG: amt:Amet_0304 transposase, IS4 family protein; transposase IS4 family protein 4384667 11778792 EKO11_4170 Escherichia coli KO11FL transposase IS4 family protein YP_005279797.1 4383459 D 595495 CDS YP_005279798.1 378714905 11778794 complement(4385348..4385911) 1 NC_016902.1 PFAM: transposase IS4 family protein; KEGG: acl:ACL_0003 IS-10 transposase; transposase IS4 family protein 4385911 11778794 EKO11_4172 Escherichia coli KO11FL transposase IS4 family protein YP_005279798.1 4385348 R 595495 CDS YP_005279799.1 378714906 11778795 4386364..4387233 1 NC_016902.1 KEGG: ebw:BWG_3858 hypothetical protein; hypothetical protein 4387233 11778795 EKO11_4173 Escherichia coli KO11FL hypothetical protein YP_005279799.1 4386364 D 595495 CDS YP_005279800.1 378714907 11779769 complement(4387436..4387789) 1 NC_016902.1 KEGG: sdy:SDY_4450 hypothetical protein; hypothetical protein 4387789 11779769 EKO11_4174 Escherichia coli KO11FL hypothetical protein YP_005279800.1 4387436 R 595495 CDS YP_005279801.1 378714908 11778796 complement(4387927..4389573) 1 NC_016902.1 KEGG: sdy:SDY_4449 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; chaperonin GroEL 4389573 11778796 EKO11_4175 Escherichia coli KO11FL chaperonin GroEL YP_005279801.1 4387927 R 595495 CDS YP_005279802.1 378714909 11778797 complement(4389617..4389910) 1 NC_016902.1 PFAM: Chaperonin Cpn10; KEGG: sdy:SDY_4448 co-chaperonin GroES; chaperonin Cpn10 4389910 11778797 EKO11_4176 Escherichia coli KO11FL chaperonin Cpn10 YP_005279802.1 4389617 R 595495 CDS YP_005279803.1 378714910 11778798 4390126..4391442 1 NC_016902.1 KEGG: eoh:ECO103_4936 inner membrane protein YjeH; manually curated; PFAM: amino acid permease-associated region; amino acid permease 4391442 11778798 EKO11_4177 Escherichia coli KO11FL amino acid permease YP_005279803.1 4390126 D 595495 CDS YP_005279804.1 378714911 11778799 complement(4391458..4391934) 1 NC_016902.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: sbc:SbBS512_E4669 FxsA; FxsA cytoplasmic membrane protein 4391934 11778799 EKO11_4178 Escherichia coli KO11FL FxsA cytoplasmic membrane protein YP_005279804.1 4391458 R 595495 CDS YP_005279805.1 378714912 11778800 4392271..4393707 1 NC_016902.1 KEGG: sdy:SDY_4444 aspartate ammonia-lyase; TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; Fumarase C-like; aspartate ammonia-lyase 4393707 11778800 EKO11_4179 Escherichia coli KO11FL aspartate ammonia-lyase YP_005279805.1 4392271 D 595495 CDS YP_005279806.1 378714913 11778801 4393825..4395126 1 NC_016902.1 KEGG: sbc:SbBS512_E4667 anaerobic C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; anaerobic c4-dicarboxylate antiporter 4395126 11778801 EKO11_4180 Escherichia coli KO11FL anaerobic c4-dicarboxylate antiporter YP_005279806.1 4393825 D 595495 CDS YP_005279807.1 378714914 11778802 4395242..4395580 1 NC_016902.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: sdy:SDY_4442 divalent-cation tolerance protein CutA; CutA1 divalent ion tolerance protein 4395580 11778802 EKO11_4181 Escherichia coli KO11FL CutA1 divalent ion tolerance protein YP_005279807.1 4395242 D 595495 CDS YP_005279808.1 378714915 11778803 4395556..4397253 1 NC_016902.1 KEGG: ebw:BWG_3849 thiol:disulfide interchange protein precursor; PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain-containing protein; Protein-disulfide reductase 4397253 11778803 EKO11_4182 Escherichia coli KO11FL Protein-disulfide reductase YP_005279808.1 4395556 D 595495 CDS YP_005279809.1 378714916 11778804 4397290..4397865 1 NC_016902.1 PFAM: regulatory protein TetR; KEGG: ssn:SSON_4318 putative transcriptional regulator; regulatory protein TetR 4397865 11778804 EKO11_4183 Escherichia coli KO11FL regulatory protein TetR YP_005279809.1 4397290 D 595495 CDS YP_005279810.1 378714917 11778806 complement(4398159..4398377) 1 NC_016902.1 manually curated; hypothetical protein 4398377 11778806 EKO11_4184 Escherichia coli KO11FL hypothetical protein YP_005279810.1 4398159 R 595495 CDS YP_005279811.1 378714918 11778807 4398664..4400202 1 NC_016902.1 PFAM: transcriptional regulator domain-containing protein; KEGG: ebw:BWG_3847 DNA-binding transcriptional activator CadC; transcriptional regulator CadC 4400202 11778807 EKO11_4185 Escherichia coli KO11FL transcriptional regulator CadC YP_005279811.1 4398664 D 595495 CDS YP_005279812.1 378714919 11779770 4400567..4401901 1 NC_016902.1 KEGG: ebd:ECBD_3898 lysine/cadaverine antiporter; TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; arginine/ornithine antiporter 4401901 11779770 EKO11_4186 Escherichia coli KO11FL arginine/ornithine antiporter YP_005279812.1 4400567 D 595495 CDS YP_005279813.1 378714920 11778808 4401981..4404128 1 NC_016902.1 KEGG: ebd:ECBD_3899 lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; lysine decarboxylase 4404128 11778808 EKO11_4187 Escherichia coli KO11FL lysine decarboxylase YP_005279813.1 4401981 D 595495 CDS YP_005279814.1 378714921 11778809 4404187..4405644 1 NC_016902.1 KEGG: ebw:BWG_3844 putative transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; amino acid/peptide transporter 4405644 11778809 EKO11_4188 Escherichia coli KO11FL amino acid/peptide transporter YP_005279814.1 4404187 D 595495 CDS YP_005279815.1 378714922 11778810 4405881..4407398 1 NC_016902.1 KEGG: eok:G2583_4956 lysyl-tRNA synthetase, heat inducible; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; lysyl-tRNA synthetase 4407398 11778810 EKO11_4189 Escherichia coli KO11FL lysyl-tRNA synthetase YP_005279815.1 4405881 D 595495 CDS YP_005279816.1 378714923 11778811 complement(4407517..4407690) 1 NC_016902.1 PFAM: Protein of unknown function DUF2566; KEGG: ebd:ECBD_3902 uncharacterized protein YjdO; hypothetical protein 4407690 11778811 EKO11_4190 Escherichia coli KO11FL hypothetical protein YP_005279816.1 4407517 R 595495 CDS YP_005279817.1 378714924 11778812 complement(4407718..4408014) 1 NC_016902.1 KEGG: ssn:SSON_4305 hypothetical protein; hypothetical protein 4408014 11778812 EKO11_4191 Escherichia coli KO11FL hypothetical protein YP_005279817.1 4407718 R 595495 CDS YP_005279818.1 378714925 11778813 complement(4408241..4408513) 1 NC_016902.1 KEGG: ebd:ECBD_3904 hypothetical protein; hypothetical protein 4408513 11778813 EKO11_4192 Escherichia coli KO11FL hypothetical protein YP_005279818.1 4408241 R 595495 CDS YP_005279819.1 378714926 11778814 complement(4408525..4408755) 1 NC_016902.1 KEGG: eok:G2583_4952 hypothetical protein; hypothetical protein 4408755 11778814 EKO11_4193 Escherichia coli KO11FL hypothetical protein YP_005279819.1 4408525 R 595495 CDS YP_005279820.1 378714927 11778815 4408936..4410567 1 NC_016902.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; KEGG: sdy:SDY_4238 sensory histidine kinase DcuS; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; signal transduction histidine kinase regulating citrate/malate metabolism 4410567 11778815 EKO11_4194 Escherichia coli KO11FL signal transduction histidine kinase regulating citrate/malate metabolism YP_005279820.1 4408936 D 595495 CDS YP_005279821.1 378714928 11778816 4410564..4411283 1 NC_016902.1 KEGG: ebd:ECBD_3907 DNA-binding transcriptional activator DcuR; PFAM: response regulator receiver; SMART: response regulator receiver; fused response regulator receiver/hypothetical protein 4411283 11778816 EKO11_4195 Escherichia coli KO11FL fused response regulator receiver/hypothetical protein YP_005279821.1 4410564 D 595495 CDS YP_005279822.1 378714929 11778817 4411854..4413194 1 NC_016902.1 KEGG: sbo:SBO_4327 anaerobic C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; anaerobic c4-dicarboxylate antiporter 4413194 11778817 EKO11_4196 Escherichia coli KO11FL anaerobic c4-dicarboxylate antiporter YP_005279822.1 4411854 D 595495 CDS YP_005279823.1 378714930 11778818 4413272..4414918 1 NC_016902.1 KEGG: ebw:BWG_3835 anaerobic class I fumarate hydratase (fumarase B); TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 4414918 11778818 EKO11_4197 Escherichia coli KO11FL Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta YP_005279823.1 4413272 D 595495 CDS YP_005279824.1 378714931 11778819 4415040..4415669 1 NC_016902.1 PFAM: Uncharacterised conserved protein UCP020606; KEGG: ebw:BWG_3834 hypothetical protein; hypothetical protein 4415669 11778819 EKO11_4198 Escherichia coli KO11FL hypothetical protein YP_005279824.1 4415040 D 595495 CDS YP_005279825.1 378714932 11778820 complement(4415808..4417217) 1 NC_016902.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: ebw:BWG_3833 melibiose:sodium symporter; sugar (Glycoside-Pentoside-Hexuronide) transporter 4417217 11778820 EKO11_4199 Escherichia coli KO11FL sugar (Glycoside-Pentoside-Hexuronide) transporter YP_005279825.1 4415808 R 595495 CDS YP_005279826.1 378714933 11778821 complement(4417332..4418687) 1 NC_016902.1 PFAM: glycoside hydrolase family 4; KEGG: ebw:BWG_3832 alpha-galactosidase, NAD(P)-binding; glycoside hydrolase family protein 4418687 11778821 EKO11_4200 Escherichia coli KO11FL glycoside hydrolase family protein YP_005279826.1 4417332 R 595495 CDS YP_005279827.1 378714934 11778822 4418970..4419878 1 NC_016902.1 KEGG: ebd:ECBD_3913 DNA-binding transcriptional regulator MelR; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 4419878 11778822 EKO11_4201 Escherichia coli KO11FL AraC family transcriptional regulator YP_005279827.1 4418970 D 595495 CDS YP_005279828.1 378714935 11778823 4420074..4422344 1 NC_016902.1 KEGG: eoh:ECO103_4869 biodegradative arginine decarboxylase AdiA; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; Arginine decarboxylase 4422344 11778823 EKO11_4202 Escherichia coli KO11FL Arginine decarboxylase YP_005279828.1 4420074 D 595495 CDS YP_005279829.1 378714936 11778824 4422669..4423430 1 NC_016902.1 KEGG: ebd:ECBD_3915 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 4423430 11778824 EKO11_4203 Escherichia coli KO11FL AraC family transcriptional regulator YP_005279829.1 4422669 D 595495 CDS YP_005279830.1 378714937 11778825 4423567..4424904 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: ssn:SSON_4290 arginine:agmatin antiporter; amino acid permease 4424904 11778825 EKO11_4204 Escherichia coli KO11FL amino acid permease YP_005279830.1 4423567 D 595495 CDS YP_005279831.1 378714938 11778826 4425008..4426651 1 NC_016902.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: etw:ECSP_5213 putative cell division protein; sulfatase 4426651 11778826 EKO11_4205 Escherichia coli KO11FL sulfatase YP_005279831.1 4425008 D 595495 CDS YP_005279832.1 378714939 11778827 4426648..4427316 1 NC_016902.1 KEGG: ebw:BWG_3826 DNA-binding transcriptional regulator BasR; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 4427316 11778827 EKO11_4206 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005279832.1 4426648 D 595495 CDS YP_005279833.1 378714940 11778828 4427317..4428417 1 NC_016902.1 KEGG: ebd:ECBD_3919 sensor protein BasS/PmrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 4428417 11778828 EKO11_4207 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005279833.1 4427317 D 595495 CDS YP_005279834.1 378714941 11778829 complement(4428594..4430096) 1 NC_016902.1 KEGG: sdy:SDY_4102 proline/glycine betaine transporter; TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: Osmosensory transporter coiled coil; metabolite/H+ symporter, major facilitator superfamily (MFS) 4430096 11778829 EKO11_4208 Escherichia coli KO11FL metabolite/H+ symporter, major facilitator superfamily (MFS) YP_005279834.1 4428594 R 595495 CDS YP_005279835.1 378714942 11778830 complement(4430360..4431238) 1 NC_016902.1 KEGG: ebw:BWG_3823 hypothetical protein; hypothetical protein 4431238 11778830 EKO11_4209 Escherichia coli KO11FL hypothetical protein YP_005279835.1 4430360 R 595495 CDS YP_005279836.1 378714943 11778831 complement(4431235..4433463) 1 NC_016902.1 KEGG: ebw:BWG_3822 hypothetical protein; hypothetical protein 4433463 11778831 EKO11_4210 Escherichia coli KO11FL hypothetical protein YP_005279836.1 4431235 R 595495 CDS YP_005279837.1 378714944 11778832 4433864..4434199 1 NC_016902.1 KEGG: sdy:SDY_4109 hypothetical protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; alkylphosphonate utilization operon protein PhnA 4434199 11778832 EKO11_4211 Escherichia coli KO11FL alkylphosphonate utilization operon protein PhnA YP_005279837.1 4433864 D 595495 CDS YP_005279838.1 378714945 11779771 4434857..4435300 1 NC_016902.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ebd:ECBD_3924 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 4435300 11779771 EKO11_4212 Escherichia coli KO11FL Glyoxalase/bleomycin resistance protein/dioxygenase YP_005279838.1 4434857 D 595495 CDS YP_005279839.1 378714946 11778833 4435433..4436221 1 NC_016902.1 TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: ebw:BWG_3819 phosphonate/organophosphate ester transporter subunit; SMART: AAA ATPase; phosphonate ABC transporter ATP-binding protein 4436221 11778833 EKO11_4213 Escherichia coli KO11FL phosphonate ABC transporter ATP-binding protein YP_005279839.1 4435433 D 595495 CDS YP_005279840.1 378714947 11778834 4436246..4437262 1 NC_016902.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate binding protein; phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: sbo:SBO_4130 periplasmic binding protein component of Pn transporter; phosphonate ABC transporter substrate-binding protein 4437262 11778834 EKO11_4214 Escherichia coli KO11FL phosphonate ABC transporter substrate-binding protein YP_005279840.1 4436246 D 595495 CDS YP_005279841.1 378714948 11778836 4438176..4438901 1 NC_016902.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; KEGG: ebd:ECBD_3928 phosphonate metabolism transcriptional regulator PhnF; SMART: regulatory protein GntR HTH; phosphonate C-P lyase system transcriptional regulator PhnF 4438901 11778836 EKO11_4216 Escherichia coli KO11FL phosphonate C-P lyase system transcriptional regulator PhnF YP_005279841.1 4438176 D 595495 CDS YP_005279842.1 378714949 11779772 4438902..4439354 1 NC_016902.1 KEGG: ebw:BWG_3816 carbon-phosphorus lyase complex subunit; TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; phosphonate C-P lyase system protein PhnG 4439354 11779772 EKO11_4217 Escherichia coli KO11FL phosphonate C-P lyase system protein PhnG YP_005279842.1 4438902 D 595495 CDS YP_005279843.1 378714950 11778837 4439351..4439935 1 NC_016902.1 KEGG: ebd:ECBD_3930 carbon-phosphorus lyase complex subunit; TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; phosphonate C-P lyase system protein PhnH 4439935 11778837 EKO11_4218 Escherichia coli KO11FL phosphonate C-P lyase system protein PhnH YP_005279843.1 4439351 D 595495 CDS YP_005279844.1 378714951 11778838 4439935..4440999 1 NC_016902.1 PFAM: phosphonate metabolism; KEGG: ebw:BWG_3814 carbon-phosphorus lyase complex subunit; phosphonate metabolism protein 4440999 11778838 EKO11_4219 Escherichia coli KO11FL phosphonate metabolism protein YP_005279844.1 4439935 D 595495 CDS YP_005279845.1 378714952 11778839 4440992..4441837 1 NC_016902.1 PFAM: phosphonate metabolism PhnJ; KEGG: ebw:BWG_3813 carbon-phosphorus lyase complex subunit; phosphonate metabolism PhnJ 4441837 11778839 EKO11_4220 Escherichia coli KO11FL phosphonate metabolism PhnJ YP_005279845.1 4440992 D 595495 CDS YP_005279846.1 378714953 11778840 4441834..4442592 1 NC_016902.1 TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ssn:SSON_4273 phosphonate C-P lyase system protein PhnK; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnK 4442592 11778840 EKO11_4221 Escherichia coli KO11FL phosphonate C-P lyase system protein PhnK YP_005279846.1 4441834 D 595495 CDS YP_005279847.1 378714954 11778841 4442703..4443383 1 NC_016902.1 TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; KEGG: ebd:ECBD_3934 phosphonate C-P lyase system protein PhnL; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnL 4443383 11778841 EKO11_4222 Escherichia coli KO11FL phosphonate C-P lyase system protein PhnL YP_005279847.1 4442703 D 595495 CDS YP_005279848.1 378714955 11778842 4443380..4444516 1 NC_016902.1 KEGG: ebr:ECB_03967 carbon-phosphorus lyase complex subunit; TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; phosphonate metabolism protein PhnM 4444516 11778842 EKO11_4223 Escherichia coli KO11FL phosphonate metabolism protein PhnM YP_005279848.1 4443380 D 595495 CDS YP_005279849.1 378714956 11778843 4444516..4445073 1 NC_016902.1 KEGG: ssn:SSON_4270 ribose 1,5-bisphosphokinase; TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 4445073 11778843 EKO11_4224 Escherichia coli KO11FL phosphonate metabolism protein/1,5-bisphosphokinase PhnN YP_005279849.1 4444516 D 595495 CDS YP_005279850.1 378714957 11779773 4445060..4445494 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ebd:ECBD_3937 aminoalkylphosphonic acid N-acetyltransferase; N-acetyltransferase GCN5 4445494 11779773 EKO11_4225 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005279850.1 4445060 D 595495 CDS YP_005279851.1 378714958 11779774 4445496..4446254 1 NC_016902.1 TIGRFAM: phosphonate metabolism protein PhnP; KEGG: ebd:ECBD_3938 carbon-phosphorus lyase complex accessory protein; phosphonate metabolism protein PhnP 4446254 11779774 EKO11_4226 Escherichia coli KO11FL phosphonate metabolism protein PhnP YP_005279851.1 4445496 D 595495 CDS YP_005279852.1 378714959 11778844 complement(4446401..4446730) 1 NC_016902.1 KEGG: sbo:SBO_4117 hypothetical protein; hypothetical protein 4446730 11778844 EKO11_4227 Escherichia coli KO11FL hypothetical protein YP_005279852.1 4446401 R 595495 CDS YP_005279853.1 378714960 11778845 complement(4446799..4447248) 1 NC_016902.1 TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: ebd:ECBD_3940 ribose-5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; ribose 5-phosphate isomerase B 4447248 11778845 EKO11_4228 Escherichia coli KO11FL ribose 5-phosphate isomerase B YP_005279853.1 4446799 R 595495 CDS YP_005279854.1 378714961 11778846 4447607..4448497 1 NC_016902.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ebr:ECB_03961 DNA-binding transcriptional repressor RpiR; RpiR family transcriptional regulator 4448497 11778846 EKO11_4229 Escherichia coli KO11FL RpiR family transcriptional regulator YP_005279854.1 4447607 D 595495 CDS YP_005279855.1 378714962 11778847 4448556..4449491 1 NC_016902.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ebd:ECBD_3942 D-allose transporter subunit; periplasmic binding protein/LacI transcriptional regulator 4449491 11778847 EKO11_4230 Escherichia coli KO11FL periplasmic binding protein/LacI transcriptional regulator YP_005279855.1 4448556 D 595495 CDS YP_005279856.1 378714963 11778848 4449618..4451150 1 NC_016902.1 KEGG: ebd:ECBD_3943 D-allose transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4451150 11778848 EKO11_4231 Escherichia coli KO11FL ABC transporter YP_005279856.1 4449618 D 595495 CDS YP_005279857.1 378714964 11778849 4451129..4452109 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: ebd:ECBD_3944 D-allose transporter subunit; inner-membrane translocator 4452109 11778849 EKO11_4232 Escherichia coli KO11FL inner-membrane translocator YP_005279857.1 4451129 D 595495 CDS YP_005279858.1 378714965 11778850 4452120..4452815 1 NC_016902.1 KEGG: ebd:ECBD_3945 allulose-6-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase 4452815 11778850 EKO11_4233 Escherichia coli KO11FL Ribulose-phosphate 3-epimerase YP_005279858.1 4452120 D 595495 CDS YP_005279859.1 378714966 11778851 4452799..4453728 1 NC_016902.1 PFAM: ROK family protein; KEGG: ebd:ECBD_3946 D-allose kinase; ROK family protein 4453728 11778851 EKO11_4234 Escherichia coli KO11FL ROK family protein YP_005279859.1 4452799 D 595495 CDS YP_005279860.1 378714967 11779775 4454001..4455986 1 NC_016902.1 KEGG: ebw:BWG_3798 putative alkyl sulfatase; putative alkyl sulfatase 4455986 11779775 EKO11_4235 Escherichia coli KO11FL putative alkyl sulfatase YP_005279860.1 4454001 D 595495 CDS YP_005279861.1 378714968 11778852 4456195..4456470 1 NC_016902.1 KEGG: ebd:ECBD_3948 formate dehydrogenase H; formate dehydrogenase H 4456470 11778852 EKO11_4236 Escherichia coli KO11FL formate dehydrogenase H YP_005279861.1 4456195 D 595495 CDS YP_005279862.1 378714969 11779776 4456489..4457520 1 NC_016902.1 KEGG: ebd:ECBD_3949 multidrug resistance protein MdtN; TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; efflux pump membrane protein 4457520 11779776 EKO11_4237 Escherichia coli KO11FL efflux pump membrane protein YP_005279862.1 4456489 D 595495 CDS YP_005279863.1 378714970 11778853 4457520..4459571 1 NC_016902.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: ebw:BWG_3795 multidrug efflux system protein MdtO; fusaric acid resistance protein 4459571 11778853 EKO11_4238 Escherichia coli KO11FL fusaric acid resistance protein YP_005279863.1 4457520 D 595495 CDS YP_005279864.1 378714971 11778854 4459568..4461034 1 NC_016902.1 KEGG: ebd:ECBD_3951 putative outer membrane efflux protein MdtP; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 4461034 11778854 EKO11_4239 Escherichia coli KO11FL NodT family RND efflux system outer membrane lipoprotein YP_005279864.1 4459568 D 595495 CDS YP_005279865.1 378714972 11779777 4461232..4463379 1 NC_016902.1 manually curated; TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: ebr:ECB_03951 formate dehydrogenase-H, selenopolypeptide subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 4463379 11779777 EKO11_4240 Escherichia coli KO11FL formate dehydrogenase subunit alpha YP_005279865.1 4461232 D 595495 CDS YP_005279866.1 378714973 11779778 4463473..4464162 1 NC_016902.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: ssn:SSON_4259 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 4464162 11779778 EKO11_4241 Escherichia coli KO11FL Sel1 domain-containing protein repeat-containing protein YP_005279866.1 4463473 D 595495 CDS YP_005279867.1 378714974 11778856 complement(4464693..4466006) 1 NC_016902.1 PFAM: sodium:dicarboxylate symporter; KEGG: ebw:BWG_3791 glutamate/aspartate:proton symporter; sodium:dicarboxylate symporter 4466006 11778856 EKO11_4243 Escherichia coli KO11FL sodium:dicarboxylate symporter YP_005279867.1 4464693 R 595495 CDS YP_005279868.1 378714975 11779779 complement(4466348..4466944) 1 NC_016902.1 KEGG: ebr:ECB_03948 formate-dependent nitrite reductase complex subunit NrfG; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 4466944 11779779 EKO11_4244 Escherichia coli KO11FL hypothetical protein YP_005279868.1 4466348 R 595495 CDS YP_005279869.1 378714976 11778857 complement(4466941..4467324) 1 NC_016902.1 KEGG: ebw:BWG_3789 formate-dependent nitrite reductase complex subunit NrfF; TIGRFAM: cytochrome c nitrite reductase, accessory protein NrfF; PFAM: cytochrome C biogenesis protein; cytochrome c nitrite reductase, accessory protein NrfF 4467324 11778857 EKO11_4245 Escherichia coli KO11FL cytochrome c nitrite reductase, accessory protein NrfF YP_005279869.1 4466941 R 595495 CDS YP_005279870.1 378714977 11778858 complement(4467317..4468939) 1 NC_016902.1 KEGG: ebw:BWG_3788 heme lyase subunit NrfE; TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; cytochrome c-type biogenesis protein CcmF 4468939 11778858 EKO11_4246 Escherichia coli KO11FL cytochrome c-type biogenesis protein CcmF YP_005279870.1 4467317 R 595495 CDS YP_005279871.1 378714978 11778859 complement(4469055..4470011) 1 NC_016902.1 KEGG: ebd:ECBD_3959 cytochrome c nitrite reductase, NrfD subunit; TIGRFAM: cytochrome c nitrite reductase, NrfD subunit; PFAM: Polysulphide reductase NrfD; cytochrome c nitrite reductase, NrfD subunit 4470011 11778859 EKO11_4247 Escherichia coli KO11FL cytochrome c nitrite reductase, NrfD subunit YP_005279871.1 4469055 R 595495 CDS YP_005279872.1 378714979 11778860 complement(4470008..4470679) 1 NC_016902.1 TIGRFAM: cytochrome c nitrite reductase, Fe-S protein; KEGG: sbo:SBO_4103 formate-dependent nitrite reductase complex Fe-S centers; cytochrome c nitrite reductase, Fe-S protein 4470679 11778860 EKO11_4248 Escherichia coli KO11FL cytochrome c nitrite reductase, Fe-S protein YP_005279872.1 4470008 R 595495 CDS YP_005279873.1 378714980 11778861 complement(4470676..4471242) 1 NC_016902.1 TIGRFAM: cytochrome c nitrite reductase, pentaheme subunit; KEGG: ssn:SSON_4252 cytochrome c nitrite reductase pentaheme subunit; cytochrome c nitrite reductase, pentaheme subunit 4471242 11778861 EKO11_4249 Escherichia coli KO11FL cytochrome c nitrite reductase, pentaheme subunit YP_005279873.1 4470676 R 595495 CDS YP_005279874.1 378714981 11778862 complement(4471287..4472723) 1 NC_016902.1 TIGRFAM: formate-dependent cytochrome c nitrite reductase, c552 subunit; KEGG: sbc:SbBS512_E4591 cytochrome c552; PFAM: cytochrome c552; formate-dependent cytochrome c nitrite reductase, c552 subunit 4472723 11778862 EKO11_4250 Escherichia coli KO11FL formate-dependent cytochrome c nitrite reductase, c552 subunit YP_005279874.1 4471287 R 595495 CDS YP_005279875.1 378714982 11778863 4473116..4475074 1 NC_016902.1 KEGG: ebd:ECBD_3963 acetyl-CoA synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate/CoA ligase 4475074 11778863 EKO11_4251 Escherichia coli KO11FL acetate/CoA ligase YP_005279875.1 4473116 D 595495 CDS YP_005279876.1 378714983 11778864 4475274..4475588 1 NC_016902.1 PFAM: protein of unknown function DUF485; KEGG: sbc:SbBS512_E4587 hypothetical protein; hypothetical protein 4475588 11778864 EKO11_4252 Escherichia coli KO11FL hypothetical protein YP_005279876.1 4475274 D 595495 CDS YP_005279877.1 378714984 11778865 4475585..4477234 1 NC_016902.1 KEGG: ebr:ECB_03939 acetate permease; TIGRFAM: cation/acetate symporter ActP; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; cation/acetate symporter ActP 4477234 11778865 EKO11_4253 Escherichia coli KO11FL cation/acetate symporter ActP YP_005279877.1 4475585 D 595495 CDS YP_005279878.1 378714985 11778866 4477412..4478704 1 NC_016902.1 PFAM: pentapeptide repeat protein; KEGG: ebr:ECB_03938 hypothetical protein; pentapeptide repeat-containing protein 4478704 11778866 EKO11_4254 Escherichia coli KO11FL pentapeptide repeat-containing protein YP_005279878.1 4477412 D 595495 CDS YP_005279879.1 378714986 11778867 complement(4478858..4480507) 1 NC_016902.1 KEGG: ebw:BWG_3779 putative cation/proton antiporter; TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; Na+/H+ antiporter 4480507 11778867 EKO11_4255 Escherichia coli KO11FL Na+/H+ antiporter YP_005279879.1 4478858 R 595495 CDS YP_005279880.1 378714987 11778868 complement(4480659..4482008) 1 NC_016902.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: sdy:SDY_4503 hypothetical protein; xanthine/uracil/vitamin C permease 4482008 11778868 EKO11_4256 Escherichia coli KO11FL xanthine/uracil/vitamin C permease YP_005279880.1 4480659 R 595495 CDS YP_005279881.1 378714988 11778869 complement(4482554..4483018) 1 NC_016902.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: sdy:SDY_4504 redox-sensing activator of SoxS; SMART: regulatory protein MerR; MerR family transcriptional regulator 4483018 11778869 EKO11_4257 Escherichia coli KO11FL MerR family transcriptional regulator YP_005279881.1 4482554 R 595495 CDS YP_005279882.1 378714989 11778870 4483104..4483427 1 NC_016902.1 KEGG: sbc:SbBS512_E4580 DNA-binding transcriptional regulator SoxS; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 4483427 11778870 EKO11_4258 Escherichia coli KO11FL AraC family transcriptional regulator YP_005279882.1 4483104 D 595495 CDS YP_005279883.1 378714990 11778871 complement(4483430..4485016) 1 NC_016902.1 KEGG: ebd:ECBD_3971 EAL domain protein; PFAM: EAL domain protein; SMART: EAL domain protein; EAL domain-containing protein 4485016 11778871 EKO11_4259 Escherichia coli KO11FL EAL domain-containing protein YP_005279883.1 4483430 R 595495 CDS YP_005279884.1 378714991 11778872 4485446..4485727 1 NC_016902.1 KEGG: sbc:SbBS512_E4574 hypothetical protein; hypothetical protein 4485727 11778872 EKO11_4260 Escherichia coli KO11FL hypothetical protein YP_005279884.1 4485446 D 595495 CDS YP_005279885.1 378714992 11778873 complement(4485826..4486362) 1 NC_016902.1 KEGG: sbo:SBO_4088 single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 4486362 11778873 EKO11_4261 Escherichia coli KO11FL single-strand binding protein YP_005279885.1 4485826 R 595495 CDS YP_005279886.1 378714993 11778874 4486616..4489438 1 NC_016902.1 KEGG: sbc:SbBS512_E4572 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; excinuclease ABC subunit A 4489438 11778874 EKO11_4262 Escherichia coli KO11FL excinuclease ABC subunit A YP_005279886.1 4486616 D 595495 CDS YP_005279887.1 378714994 11779780 complement(4489473..4489829) 1 NC_016902.1 KEGG: sdy:SDY_4510 hypothetical protein; hypothetical protein 4489829 11779780 EKO11_4263 Escherichia coli KO11FL hypothetical protein YP_005279887.1 4489473 R 595495 CDS YP_005279888.1 378714995 11778875 complement(4489833..4490249) 1 NC_016902.1 PFAM: protein of unknown function UPF0047; KEGG: ssn:SSON_4236 hypothetical protein; hypothetical protein 4490249 11778875 EKO11_4264 Escherichia coli KO11FL hypothetical protein YP_005279888.1 4489833 R 595495 CDS YP_005279889.1 378714996 11778876 complement(4490360..4491073) 1 NC_016902.1 TIGRFAM: HAD superfamily (subfamily IIIB) phosphatase, TIGR01672; KEGG: sbc:SbBS512_E4569 acid phosphatase/phosphotransferase; PFAM: acid phosphatase (Class B); HAD superfamily phosphatase 4491073 11778876 EKO11_4265 Escherichia coli KO11FL HAD superfamily phosphatase YP_005279889.1 4490360 R 595495 CDS YP_005279890.1 378714997 11778878 complement(4492179..4493372) 1 NC_016902.1 KEGG: eoi:ECO111_4928 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II; aromatic-amino-acid transaminase 4493372 11778878 EKO11_4267 Escherichia coli KO11FL aromatic-amino-acid transaminase YP_005279890.1 4492179 R 595495 CDS YP_005279891.1 378714998 11778879 complement(4493625..4494704) 1 NC_016902.1 TIGRFAM: alanine racemase; KEGG: sfv:SFV_4160 alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 4494704 11778879 EKO11_4268 Escherichia coli KO11FL alanine racemase YP_005279891.1 4493625 R 595495 CDS YP_005279892.1 378714999 11778880 complement(4494757..4496172) 1 NC_016902.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: sbc:SbBS512_E4543 replicative DNA helicase; SMART: AAA ATPase; replicative DNA helicase 4496172 11778880 EKO11_4269 Escherichia coli KO11FL replicative DNA helicase YP_005279892.1 4494757 R 595495 CDS YP_005279893.1 378715000 11778881 4496255..4497238 1 NC_016902.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_4231 quinone oxidoreductase, NADPH-dependent; alcohol dehydrogenase 4497238 11778881 EKO11_4270 Escherichia coli KO11FL alcohol dehydrogenase YP_005279893.1 4496255 D 595495 CDS YP_005279894.1 378715001 11778882 complement(4497404..4497823) 1 NC_016902.1 manually curated; TIGRFAM: phage shock protein G; KEGG: sfv:SFV_4163 phage shock protein G; PFAM: shock protein G; phage shock protein G 4497823 11778882 EKO11_4271 Escherichia coli KO11FL phage shock protein G YP_005279894.1 4497404 R 595495 CDS YP_005279895.1 378715002 11778883 complement(4497780..4498817) 1 NC_016902.1 KEGG: ssn:SSON_4229 tRNA-dihydrouridine synthase A; TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; yjbN family TIM-barrel protein 4498817 11778883 EKO11_4272 Escherichia coli KO11FL yjbN family TIM-barrel protein YP_005279895.1 4497780 R 595495 CDS YP_005279896.1 378715003 11778884 complement(4499181..4500203) 1 NC_016902.1 PFAM: Protein of unknown function DUF2713; KEGG: etw:ECSP_5125 hypothetical protein; hypothetical protein 4500203 11778884 EKO11_4273 Escherichia coli KO11FL hypothetical protein YP_005279896.1 4499181 R 595495 CDS YP_005279897.1 378715004 11778885 4500521..4501036 1 NC_016902.1 PFAM: ferric-uptake regulator; KEGG: ssn:SSON_4226 zinc uptake transcriptional repressor; ferric uptake regulator family protein 4501036 11778885 EKO11_4274 Escherichia coli KO11FL ferric uptake regulator family protein YP_005279897.1 4500521 D 595495 CDS YP_005279898.1 378715005 11778886 complement(4501078..4501287) 1 NC_016902.1 PFAM: CsbD family protein; KEGG: sdy:SDY_4529 putative stress-response protein; CsbD family protein 4501287 11778886 EKO11_4275 Escherichia coli KO11FL CsbD family protein YP_005279898.1 4501078 R 595495 CDS YP_005279899.1 378715006 11778887 complement(4501403..4502782) 1 NC_016902.1 manually curated; TIGRFAM: MATE efflux family protein; KEGG: sfv:SFV_4169 DNA-damage-inducible SOS response protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 4502782 11778887 EKO11_4276 Escherichia coli KO11FL MATE efflux family protein YP_005279899.1 4501403 R 595495 CDS YP_005279900.1 378715007 11778888 complement(4502801..4503409) 1 NC_016902.1 KEGG: sdy:SDY_4531 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; Peptidase S24/S26A/S26B, conserved region; LexA family transcriptional repressor 4503409 11778888 EKO11_4277 Escherichia coli KO11FL LexA family transcriptional repressor YP_005279900.1 4502801 R 595495 CDS YP_005279901.1 378715008 11778889 complement(4503519..4503887) 1 NC_016902.1 KEGG: sdy:SDY_4532 diacylglycerol kinase; PFAM: diacylglycerol kinase; Diacylglycerol kinase 4503887 11778889 EKO11_4278 Escherichia coli KO11FL Diacylglycerol kinase YP_005279901.1 4503519 R 595495 CDS YP_005279902.1 378715009 11778890 4504058..4506481 1 NC_016902.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: eok:G2583_4866 glycerol-3-phosphate acyltransferase; SMART: phospholipid/glycerol acyltransferase; glycerol-3-phosphate O-acyltransferase 4506481 11778890 EKO11_4279 Escherichia coli KO11FL glycerol-3-phosphate O-acyltransferase YP_005279902.1 4504058 D 595495 CDS YP_005279903.1 378715010 11778891 complement(4506636..4507508) 1 NC_016902.1 KEGG: sfv:SFV_4173 4-hydroxybenzoate octaprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate polyprenyltransferase 4507508 11778891 EKO11_4280 Escherichia coli KO11FL 4-hydroxybenzoate polyprenyltransferase YP_005279903.1 4506636 R 595495 CDS YP_005279904.1 378715011 11779781 complement(4507521..4508018) 1 NC_016902.1 KEGG: sdy:SDY_4535 chorismate pyruvate lyase; PFAM: Chorismate lyase; chorismate lyase 4508018 11779781 EKO11_4281 Escherichia coli KO11FL chorismate lyase YP_005279904.1 4507521 R 595495 CDS YP_005279905.1 378715012 11778893 complement(4509627..4509821) 1 NC_016902.1 KEGG: ebd:ECBD_3996 hypothetical protein; hypothetical protein 4509821 11778893 EKO11_4283 Escherichia coli KO11FL hypothetical protein YP_005279905.1 4509627 R 595495 CDS YP_005279906.1 378715013 11779782 4509923..4510075 1 NC_016902.1 KEGG: ebd:ECBD_3997 hypothetical protein; hypothetical protein 4510075 11779782 EKO11_4284 Escherichia coli KO11FL hypothetical protein YP_005279906.1 4509923 D 595495 CDS YP_005279907.1 378715014 11778894 complement(4510050..4510970) 1 NC_016902.1 PFAM: Maltose operon periplasmic; KEGG: eoi:ECO111_4859 maltose regulon periplasmic protein; maltose operon periplasmic 4510970 11778894 EKO11_4285 Escherichia coli KO11FL maltose operon periplasmic YP_005279907.1 4510050 R 595495 CDS YP_005279908.1 378715015 11778895 complement(4511213..4512553) 1 NC_016902.1 PFAM: porin LamB type; KEGG: ssn:SSON_4214 maltoporin; LamB type porin 4512553 11778895 EKO11_4286 Escherichia coli KO11FL LamB type porin YP_005279908.1 4511213 R 595495 CDS YP_005279909.1 378715016 11778896 complement(4512625..4513830) 1 NC_016902.1 manually curated; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; KEGG: ssn:SSON_4213 maltose/maltodextrin transporter ATP-binding protein; SMART: AAA ATPase; ABC transporter 4513830 11778896 EKO11_4287 Escherichia coli KO11FL ABC transporter YP_005279909.1 4512625 R 595495 CDS YP_005279910.1 378715017 11778897 4513917..4514012 1 NC_016902.1 KEGG: ebd:ECBD_4001 hypothetical protein; hypothetical protein 4514012 11778897 EKO11_4288 Escherichia coli KO11FL hypothetical protein YP_005279910.1 4513917 D 595495 CDS YP_005279911.1 378715018 11779783 4514105..4515295 1 NC_016902.1 PFAM: extracellular solute-binding protein family 1; KEGG: ebd:ECBD_4002 maltose ABC transporter periplasmic protein; extracellular solute-binding protein 4515295 11779783 EKO11_4289 Escherichia coli KO11FL extracellular solute-binding protein YP_005279911.1 4514105 D 595495 CDS YP_005279912.1 378715019 11778898 4515449..4516993 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_4181 maltose transporter membrane protein; binding-protein-dependent transport system inner membrane protein 4516993 11778898 EKO11_4290 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005279912.1 4515449 D 595495 CDS YP_005279913.1 378715020 11778899 4517008..4517898 1 NC_016902.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S3558 maltose transporter permease; binding-protein-dependent transport system inner membrane protein 4517898 11778899 EKO11_4291 Escherichia coli KO11FL binding-protein-dependent transport system inner membrane protein YP_005279913.1 4517008 D 595495 CDS YP_005279914.1 378715021 11778900 4518270..4519745 1 NC_016902.1 TIGRFAM: sugar transporter; KEGG: eoh:ECO103_4779 D-xylose transporter XylE; sugar transporter 4519745 11778900 EKO11_4292 Escherichia coli KO11FL sugar transporter YP_005279914.1 4518270 D 595495 CDS YP_005279915.1 378715022 11778901 complement(4519789..4520199) 1 NC_016902.1 PFAM: Phosphate-starvation-inducible E-like; KEGG: sdy:SDY_4218 phosphate-starvation-inducible protein PsiE; phosphate-starvation-inducible E-like protein 4520199 11778901 EKO11_4293 Escherichia coli KO11FL phosphate-starvation-inducible E-like protein YP_005279915.1 4519789 R 595495 CDS YP_005279916.1 378715023 11779784 complement(4520794..4522890) 1 NC_016902.1 PFAM: protein of unknown function DUF940 membrane lipoprotein; KEGG: ebw:BWG_3685 putative porin; hypothetical protein 4522890 11779784 EKO11_4294 Escherichia coli KO11FL hypothetical protein YP_005279916.1 4520794 R 595495 CDS YP_005279917.1 378715024 11778902 complement(4522890..4523627) 1 NC_016902.1 PFAM: protein of unknown function DUF1017; KEGG: ebd:ECBD_4009 protein of unknown function DUF1017; hypothetical protein 4523627 11778902 EKO11_4295 Escherichia coli KO11FL hypothetical protein YP_005279917.1 4522890 R 595495 CDS YP_005279918.1 378715025 11778903 complement(4523624..4524262) 1 NC_016902.1 KEGG: eoh:ECO103_4775 putative lipoprotein; putative lipoprotein 4524262 11778903 EKO11_4296 Escherichia coli KO11FL putative lipoprotein YP_005279918.1 4523624 R 595495 CDS YP_005279919.1 378715026 11778904 complement(4524973..4526622) 1 NC_016902.1 KEGG: eoh:ECO103_4773 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase 4526622 11778904 EKO11_4297 Escherichia coli KO11FL glucose-6-phosphate isomerase YP_005279919.1 4524973 R 595495 CDS YP_005279920.1 378715027 11778905 4527147..4528496 1 NC_016902.1 TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; KEGG: eoh:ECO103_4772 aspartate kinase III; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 4528496 11778905 EKO11_4298 Escherichia coli KO11FL aspartate kinase YP_005279920.1 4527147 D 595495 CDS YP_005279921.1 378715028 11778906 4528641..4529567 1 NC_016902.1 KEGG: eoi:ECO111_4845 hypothetical protein; hypothetical protein 4529567 11778906 EKO11_4299 Escherichia coli KO11FL hypothetical protein YP_005279921.1 4528641 D 595495 CDS YP_005279922.1 378715029 11778907 complement(4529603..4530367) 1 NC_016902.1 PFAM: Nucleotidyltransferase, predicted; KEGG: eoh:ECO103_4770 hypothetical protein; nucleotidyltransferase 4530367 11778907 EKO11_4300 Escherichia coli KO11FL nucleotidyltransferase YP_005279922.1 4529603 R 595495 CDS YP_005279923.1 378715030 11778908 complement(4530400..4531527) 1 NC_016902.1 KEGG: eoj:ECO26_5136 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein; hypothetical protein 4531527 11778908 EKO11_4301 Escherichia coli KO11FL hypothetical protein YP_005279923.1 4530400 R 595495 CDS YP_005279924.1 378715031 11778909 4532057..4532329 1 NC_016902.1 KEGG: sdy:SDY_4309 hypothetical protein; hypothetical protein 4532329 11778909 EKO11_4302 Escherichia coli KO11FL hypothetical protein YP_005279924.1 4532057 D 595495 CDS YP_005279925.1 378715032 11778910 complement(4532330..4533202) 1 NC_016902.1 KEGG: eok:G2583_4847 ribosomal large subunit pseudouridine synthase F; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; pseudouridine synthase 4533202 11778910 EKO11_4303 Escherichia coli KO11FL pseudouridine synthase YP_005279925.1 4532330 R 595495 CDS YP_005279926.1 378715033 11778911 4533414..4534103 1 NC_016902.1 KEGG: sbc:SbBS512_E4515 peptidase E; PFAM: peptidase S51 dipeptidase E; dipeptidase E 4534103 11778911 EKO11_4304 Escherichia coli KO11FL dipeptidase E YP_005279926.1 4533414 D 595495 CDS YP_005279927.1 378715034 11778912 complement(4534194..4535825) 1 NC_016902.1 KEGG: ssn:SSON_4191 putative alpha helix protein; TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; sodium-dependent inorganic phosphate (Pi) transporter 4535825 11778912 EKO11_4305 Escherichia coli KO11FL sodium-dependent inorganic phosphate (Pi) transporter YP_005279927.1 4534194 R 595495 CDS YP_005279928.1 378715035 11778913 complement(4536045..4539728) 1 NC_016902.1 KEGG: ebw:BWG_3675 B12-dependent methionine synthase; TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region; methionine synthase 4539728 11778913 EKO11_4306 Escherichia coli KO11FL methionine synthase YP_005279928.1 4536045 R 595495 CDS YP_005279929.1 378715036 11778914 4539928..4540752 1 NC_016902.1 KEGG: sfx:S3646 transcriptional repressor IclR; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; IclR family transcriptional regulator 4540752 11778914 EKO11_4307 Escherichia coli KO11FL IclR family transcriptional regulator YP_005279929.1 4539928 D 595495 CDS YP_005279930.1 378715037 11778915 4541069..4542643 1 NC_016902.1 PFAM: ShET2 enterotoxin domain protein; KEGG: eoi:ECO111_4829 T3SS effector-like protein EspL-homolog; ShET2 enterotoxin domain protein 4542643 11778915 EKO11_4308 Escherichia coli KO11FL ShET2 enterotoxin domain protein YP_005279930.1 4541069 D 595495 CDS YP_005279931.1 378715038 11778916 complement(4542612..4544348) 1 NC_016902.1 KEGG: eoh:ECO103_4760 bifunctional isocitrate dehydrogenase kinase/phosphatase protein; PFAM: Isocitrate dehydrogenase kinasephosphatase; (isocitrate dehydrogenase) kinase 4544348 11778916 EKO11_4309 Escherichia coli KO11FL (isocitrate dehydrogenase) kinase YP_005279931.1 4542612 R 595495 CDS YP_005279932.1 378715039 11778917 complement(4544531..4545835) 1 NC_016902.1 KEGG: sdy:SDY_4328 isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; isocitrate lyase 4545835 11778917 EKO11_4310 Escherichia coli KO11FL isocitrate lyase YP_005279932.1 4544531 R 595495 CDS YP_005279933.1 378715040 11778918 complement(4545865..4547466) 1 NC_016902.1 TIGRFAM: malate synthase A; KEGG: eoi:ECO111_4826 malate synthase; PFAM: Malate synthase family protein; malate synthase A 4547466 11778918 EKO11_4311 Escherichia coli KO11FL malate synthase A YP_005279933.1 4545865 R 595495 CDS YP_005279934.1 378715041 11778919 complement(4547735..4548664) 1 NC_016902.1 TIGRFAM: homoserine O-succinyltransferase; KEGG: eoh:ECO103_4757 homoserine O-succinyltransferase; PFAM: homoserine O-succinyltransferase; homoserine O-succinyltransferase 4548664 11778919 EKO11_4312 Escherichia coli KO11FL homoserine O-succinyltransferase YP_005279934.1 4547735 R 595495 CDS YP_005279935.1 378715042 11778920 4548821..4549264 1 NC_016902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eoh:ECO103_4756 hypothetical protein; N-acetyltransferase GCN5 4549264 11778920 EKO11_4313 Escherichia coli KO11FL N-acetyltransferase GCN5 YP_005279935.1 4548821 D 595495 CDS YP_005279936.1 378715043 11778923 4555007..4556596 1 NC_016902.1 SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: sbc:SbBS512_E4498 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4556596 11778923 EKO11_4314 Escherichia coli KO11FL phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_005279936.1 4555007 D 595495 CDS YP_005279937.1 378715044 11778924 4556608..4557897 1 NC_016902.1 TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: ebd:ECBD_4027 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine--glycine ligase 4557897 11778924 EKO11_4315 Escherichia coli KO11FL phosphoribosylamine--glycine ligase YP_005279937.1 4556608 D 595495 CDS YP_005279938.1 378715045 11778925 complement(4557894..4559219) 1 NC_016902.1 KEGG: sbc:SbBS512_E4497 transcriptional regulatory protein ZraR; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component, sigma54 specific, transcriptional regulator, Fis family 4559219 11778925 EKO11_4316 Escherichia coli KO11FL two component, sigma54 specific, transcriptional regulator, Fis family YP_005279938.1 4557894 R 595495 CDS YP_005279939.1 378715046 11778926 complement(4559216..4560592) 1 NC_016902.1 KEGG: eoh:ECO103_4752 sensor protein ZraS; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 4560592 11778926 EKO11_4317 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005279939.1 4559216 R 595495 CDS YP_005279940.1 378715047 11778927 4560699..4560827 1 NC_016902.1 hypothetical protein 4560827 11778927 EKO11_4318 Escherichia coli KO11FL hypothetical protein YP_005279940.1 4560699 D 595495 CDS YP_005279941.1 378715048 11778928 4560830..4561255 1 NC_016902.1 KEGG: eoh:ECO103_4751 zinc resistance protein; zinc resistance protein 4561255 11778928 EKO11_4319 Escherichia coli KO11FL zinc resistance protein YP_005279941.1 4560830 D 595495 CDS YP_005279942.1 378715049 11778929 complement(4561257..4561958) 1 NC_016902.1 KEGG: sdy:SDY_3725 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1481; hypothetical protein 4561958 11778929 EKO11_4320 Escherichia coli KO11FL hypothetical protein YP_005279942.1 4561257 R 595495 CDS YP_005279943.1 378715050 11778930 complement(4561965..4562237) 1 NC_016902.1 KEGG: sdy:SDY_3726 transcriptional regulator HU subunit alpha; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 4562237 11778930 EKO11_4321 Escherichia coli KO11FL histone family protein DNA-binding protein YP_005279943.1 4561965 R 595495 CDS YP_005279944.1 378715051 11778931 complement(4562424..4563014) 1 NC_016902.1 PFAM: protein of unknown function DUF416; KEGG: ssn:SSON_4172 hypothetical protein; hypothetical protein 4563014 11778931 EKO11_4322 Escherichia coli KO11FL hypothetical protein YP_005279944.1 4562424 R 595495 CDS YP_005279945.1 378715052 11779787 complement(4563057..4563728) 1 NC_016902.1 KEGG: sbc:SbBS512_E4489 endonuclease V; PFAM: Endonuclease V; Deoxyribonuclease V 4563728 11779787 EKO11_4323 Escherichia coli KO11FL Deoxyribonuclease V YP_005279945.1 4563057 R 595495 CDS YP_005279946.1 378715053 11778932 complement(4563738..4564802) 1 NC_016902.1 TIGRFAM: uroporphyrinogen decarboxylase; KEGG: sbc:SbBS512_E4488 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 4564802 11778932 EKO11_4324 Escherichia coli KO11FL uroporphyrinogen decarboxylase YP_005279946.1 4563738 R 595495 CDS YP_005279947.1 378715054 11779788 complement(4564842..4565615) 1 NC_016902.1 KEGG: ssn:SSON_4169 NADH pyrophosphatase; PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; NAD(+) diphosphatase 4565615 11779788 EKO11_4325 Escherichia coli KO11FL NAD(+) diphosphatase YP_005279947.1 4564842 R 595495 CDS YP_005279948.1 378715055 11778933 4565710..4566186 1 NC_016902.1 PFAM: regulator of RNA polymerase sigma(70) subunit Rsd/AlgQ; KEGG: sbc:SbBS512_E4486 anti-RNA polymerase sigma 70 factor; regulator of RpoD, Rsd/AlgQ 4566186 11778933 EKO11_4326 Escherichia coli KO11FL regulator of RpoD, Rsd/AlgQ YP_005279948.1 4565710 D 595495 CDS YP_005279949.1 378715056 11778934 4566419..4568314 1 NC_016902.1 KEGG: eoh:ECO103_4743 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 4568314 11778934 EKO11_4327 Escherichia coli KO11FL thiamine biosynthesis protein ThiC YP_005279949.1 4566419 D 595495 CDS YP_005279950.1 378715057 11778935 4568314..4568949 1 NC_016902.1 KEGG: sbc:SbBS512_E4484 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 4568949 11778935 EKO11_4328 Escherichia coli KO11FL thiamine-phosphate pyrophosphorylase YP_005279950.1 4568314 D 595495 CDS YP_005279951.1 378715058 11778936 4568942..4569697 1 NC_016902.1 KEGG: sfv:SFV_4064 thiamine biosynthesis protein ThiF; TIGRFAM: thiazole biosynthesis adenylyltransferase ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; thiazole biosynthesis adenylyltransferase ThiF 4569697 11778936 EKO11_4329 Escherichia coli KO11FL thiazole biosynthesis adenylyltransferase ThiF YP_005279951.1 4568942 D 595495 CDS YP_005279952.1 378715059 11778937 4569681..4569881 1 NC_016902.1 KEGG: eoh:ECO103_4740 sulfur carrier protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein ThiS 4569881 11778937 EKO11_4330 Escherichia coli KO11FL thiamine biosynthesis protein ThiS YP_005279952.1 4569681 D 595495 CDS YP_005279953.1 378715060 11778938 4569883..4570653 1 NC_016902.1 PFAM: thiazole biosynthesis family protein; KEGG: eoh:ECO103_4739 thiazole synthase; thiazole biosynthesis family protein 4570653 11778938 EKO11_4331 Escherichia coli KO11FL thiazole biosynthesis family protein YP_005279953.1 4569883 D 595495 CDS YP_005279954.1 378715061 11778939 4570650..4571783 1 NC_016902.1 KEGG: eoi:ECO111_4806 thiamine biosynthesis protein ThiH; TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; thiazole biosynthesis protein ThiH 4571783 11778939 EKO11_4332 Escherichia coli KO11FL thiazole biosynthesis protein ThiH YP_005279954.1 4570650 D 595495 CDS YP_005279955.1 378715062 11778940 complement(4572024..4576247) 1 NC_016902.1 TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: sbo:SBO_4008 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 4576247 11778940 EKO11_4333 Escherichia coli KO11FL DNA-directed RNA polymerase subunit beta' YP_005279955.1 4572024 R 595495 CDS YP_005279956.1 378715063 11778941 complement(4576324..4580352) 1 NC_016902.1 KEGG: sbc:SbBS512_E4475 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 7; DNA-directed RNA polymerase subunit beta 4580352 11778941 EKO11_4334 Escherichia coli KO11FL DNA-directed RNA polymerase subunit beta YP_005279956.1 4576324 R 595495 CDS YP_005279957.1 378715064 11779789 complement(4580672..4581037) 1 NC_016902.1 KEGG: sdy:SDY_3742 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 4581037 11779789 EKO11_4335 Escherichia coli KO11FL 50S ribosomal protein L7/L12 YP_005279957.1 4580672 R 595495 CDS YP_005279958.1 378715065 11778942 complement(4581104..4581601) 1 NC_016902.1 PFAM: ribosomal protein L10; KEGG: sdy:SDY_3743 50S ribosomal protein L10; 50S ribosomal protein L10 4581601 11778942 EKO11_4336 Escherichia coli KO11FL 50S ribosomal protein L10 YP_005279958.1 4581104 R 595495 CDS YP_005279959.1 378715066 11778943 complement(4582014..4582718) 1 NC_016902.1 KEGG: sdy:SDY_3744 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; 50S ribosomal protein L1 4582718 11778943 EKO11_4337 Escherichia coli KO11FL 50S ribosomal protein L1 YP_005279959.1 4582014 R 595495 CDS YP_005279960.1 378715067 11778944 complement(4582722..4583150) 1 NC_016902.1 TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: sdy:SDY_3745 50S ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 4583150 11778944 EKO11_4338 Escherichia coli KO11FL 50S ribosomal protein L11 YP_005279960.1 4582722 R 595495 CDS YP_005279961.1 378715068 11778945 complement(4583309..4583854) 1 NC_016902.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: sdy:SDY_3746 transcription antitermination protein NusG; SMART: NGN domain-containing protein; KOW domain protein; NusG antitermination factor 4583854 11778945 EKO11_4339 Escherichia coli KO11FL NusG antitermination factor YP_005279961.1 4583309 R 595495 CDS YP_005279962.1 378715069 11779790 complement(4583856..4584239) 1 NC_016902.1 KEGG: sbc:SbBS512_E4469 preprotein translocase subunit SecE; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; Preprotein translocase subunit SecE 4584239 11779790 EKO11_4340 Escherichia coli KO11FL Preprotein translocase subunit SecE YP_005279962.1 4583856 R 595495 CDS YP_005279963.1 378715070 11778946 complement(4584469..4585653) 1 NC_016902.1 KEGG: sbc:SbBS512_E4468 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; translation elongation factor Tu 4585653 11778946 EKO11_4341 Escherichia coli KO11FL translation elongation factor Tu YP_005279963.1 4584469 R 595495 CDS YP_005279964.1 378715071 11778951 4586415..4587521 1 NC_016902.1 KEGG: sfv:SFV_4047 pantothenate kinase; manually curated; TIGRFAM: pantothenate kinase; pantothenate kinase 4587521 11778951 EKO11_4342 Escherichia coli KO11FL pantothenate kinase YP_005279964.1 4586415 D 595495 CDS YP_005279965.1 378715072 11778952 complement(4587550..4588515) 1 NC_016902.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; biotin operon repressor; KEGG: efe:EFER_3778 biotin--protein ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; bifunctional biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase BirA 4588515 11778952 EKO11_4343 Escherichia coli KO11FL bifunctional biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase BirA YP_005279965.1 4587550 R 595495 CDS YP_005279966.1 378715073 11778953 complement(4588512..4589540) 1 NC_016902.1 KEGG: eoh:ECO103_4726 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 4589540 11778953 EKO11_4344 Escherichia coli KO11FL UDP-N-acetylenolpyruvoylglucosamine reductase YP_005279966.1 4588512 R 595495 CDS YP_005279967.1 378715074 11778957 complement(4595311..4596168) 1 NC_016902.1 TIGRFAM: glutamate racemase; KEGG: eoh:ECO103_4725 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 4596168 11778957 EKO11_4345 Escherichia coli KO11FL glutamate racemase YP_005279967.1 4595311 R 595495 CDS YP_005279968.1 378715075 11778958 complement(4596113..4597957) 1 NC_016902.1 KEGG: ssn:SSON_4139 vitamin B12/cobalamin outer membrane transporter; TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; TonB-dependent vitamin B12 receptor 4597957 11778958 EKO11_4346 Escherichia coli KO11FL TonB-dependent vitamin B12 receptor YP_005279968.1 4596113 R 595495 CDS YP_005279969.1 378715076 11778959 4598326..4599426 1 NC_016902.1 KEGG: ebd:ECBD_4059 tRNA (uracil-5-)-methyltransferase; TIGRFAM: tRNA (uracil-5-)-methyltransferase; PFAM: (Uracil-5)-methyltransferase; tRNA (uracil-5-)-methyltransferase 4599426 11778959 EKO11_4347 Escherichia coli KO11FL tRNA (uracil-5-)-methyltransferase YP_005279969.1 4598326 D 595495 CDS YP_005279970.1 378715077 11778960 complement(4599466..4599825) 1 NC_016902.1 PFAM: protein of unknown function DUF1422; KEGG: sbc:SbBS512_E4450 hypothetical protein; hypothetical protein 4599825 11778960 EKO11_4348 Escherichia coli KO11FL hypothetical protein YP_005279970.1 4599466 R 595495 CDS YP_005279971.1 378715078 11778961 complement(4599825..4600529) 1 NC_016902.1 PFAM: regulatory protein TetR; KEGG: sdy:SDY_3765 DNA-binding transcriptional repressor FabR; regulatory protein TetR 4600529 11778961 EKO11_4349 Escherichia coli KO11FL regulatory protein TetR YP_005279971.1 4599825 R 595495 CDS YP_005279972.1 378715079 11778962 4600806..4602206 1 NC_016902.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: efe:EFER_3800 soluble pyridine nucleotide transhydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4602206 11778962 EKO11_4350 Escherichia coli KO11FL FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005279972.1 4600806 D 595495 CDS YP_005279973.1 378715080 11778963 complement(4602189..4603106) 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sdy:SDY_3796 DNA-binding transcriptional regulator OxyR; LysR family transcriptional regulator 4603106 11778963 EKO11_4351 Escherichia coli KO11FL LysR family transcriptional regulator YP_005279973.1 4602189 R 595495 CDS YP_005279974.1 378715081 11779792 complement(4603373..4604746) 1 NC_016902.1 KEGG: eoi:ECO111_4785 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; argininosuccinate lyase 4604746 11779792 EKO11_4352 Escherichia coli KO11FL argininosuccinate lyase YP_005279974.1 4603373 R 595495 CDS YP_005279975.1 378715082 11779793 complement(4604807..4605583) 1 NC_016902.1 KEGG: ebd:ECBD_4065 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 4605583 11779793 EKO11_4353 Escherichia coli KO11FL acetylglutamate kinase YP_005279975.1 4604807 R 595495 CDS YP_005279976.1 378715083 11778964 complement(4605591..4606595) 1 NC_016902.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: ebd:ECBD_4066 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase 4606595 11778964 EKO11_4354 Escherichia coli KO11FL N-acetyl-gamma-glutamyl-phosphate reductase YP_005279976.1 4605591 R 595495 CDS YP_005279977.1 378715084 11778965 4606749..4607900 1 NC_016902.1 KEGG: eoh:ECO103_4713 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; acetylornithine deacetylase 4607900 11778965 EKO11_4355 Escherichia coli KO11FL acetylornithine deacetylase YP_005279977.1 4606749 D 595495 CDS YP_005279978.1 378715085 11778966 4608252..4610903 1 NC_016902.1 KEGG: ssn:SSON_4129 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase, C-terminal region; phosphoenolpyruvate carboxylase 4610903 11778966 EKO11_4356 Escherichia coli KO11FL phosphoenolpyruvate carboxylase YP_005279978.1 4608252 D 595495 CDS YP_005279979.1 378715086 11778967 4611086..4612819 1 NC_016902.1 PFAM: sulfatase; KEGG: sbc:SbBS512_E4441 hypothetical protein; sulfatase 4612819 11778967 EKO11_4357 Escherichia coli KO11FL sulfatase YP_005279979.1 4611086 D 595495 CDS YP_005279980.1 378715087 11778968 4612968..4613819 1 NC_016902.1 KEGG: ebd:ECBD_4070 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 4613819 11778968 EKO11_4358 Escherichia coli KO11FL AraC family transcriptional regulator YP_005279980.1 4612968 D 595495 CDS YP_005279981.1 378715088 11778969 complement(4613806..4614147) 1 NC_016902.1 KEGG: sbc:SbBS512_E4440 putative fructose-like phosphotransferase EIIB subunit 3; TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system fructose-specific transporter subunit IIB 4614147 11778969 EKO11_4359 Escherichia coli KO11FL PTS system fructose-specific transporter subunit IIB YP_005279981.1 4613806 R 595495 CDS YP_005279982.1 378715089 11778970 complement(4614149..4615027) 1 NC_016902.1 TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: ssn:SSON_4125 pyruvate formate lyase II activase; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family 4615027 11778970 EKO11_4360 Escherichia coli KO11FL glycyl-radical enzyme activating protein family YP_005279982.1 4614149 R 595495 CDS YP_005279983.1 378715090 11778971 complement(4614993..4617290) 1 NC_016902.1 TIGRFAM: pyruvate formate-lyase; KEGG: eoh:ECO103_4707 putative formate acetyltransferase 2; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; pyruvate formate-lyase 4617290 11778971 EKO11_4361 Escherichia coli KO11FL pyruvate formate-lyase YP_005279983.1 4614993 R 595495 CDS YP_005279984.1 378715091 11778972 complement(4617341..4617661) 1 NC_016902.1 KEGG: sdy:SDY_3785 putative fructose-like phosphotransferase EIIB subunit 2; TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system fructose-specific transporter subunit IIB 4617661 11778972 EKO11_4362 Escherichia coli KO11FL PTS system fructose-specific transporter subunit IIB YP_005279984.1 4617341 R 595495 CDS YP_005279985.1 378715092 11778973 complement(4617676..4618755) 1 NC_016902.1 KEGG: ebd:ECBD_4075 putative fructose-like permease EIIC subunit 2; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; PTS system fructose subfamily transporter subunit IIC 4618755 11778973 EKO11_4363 Escherichia coli KO11FL PTS system fructose subfamily transporter subunit IIC YP_005279985.1 4617676 R 595495 CDS YP_005279986.1 378715093 11778974 4619064..4621565 1 NC_016902.1 KEGG: eoh:ECO103_4704 fused putative PTS enzymes PtsA: HPr component/enzyme I component/enzyme IIA component; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; phosphoryl transfer system HPr; PEP-utilising protein domain protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphoenolpyruvate-protein phosphotransferase 4621565 11778974 EKO11_4364 Escherichia coli KO11FL phosphoenolpyruvate-protein phosphotransferase YP_005279986.1 4619064 D 595495 CDS YP_005279987.1 378715094 11779794 4621577..4622239 1 NC_016902.1 TIGRFAM: transaldolase; KEGG: sbo:SBO_3966 fructose-6-phosphate aldolase; PFAM: Transaldolase; transaldolase 4622239 11779794 EKO11_4365 Escherichia coli KO11FL transaldolase YP_005279987.1 4621577 D 595495 CDS YP_005279988.1 378715095 11778975 4622250..4623353 1 NC_016902.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ebd:ECBD_4078 glycerol dehydrogenase; iron-containing alcohol dehydrogenase 4623353 11778975 EKO11_4366 Escherichia coli KO11FL iron-containing alcohol dehydrogenase YP_005279988.1 4622250 D 595495 CDS YP_005279989.1 378715096 11778976 4623628..4624245 1 NC_016902.1 PFAM: protein of unknown function DUF1287; KEGG: eoh:ECO103_4701 hypothetical protein; hypothetical protein 4624245 11778976 EKO11_4367 Escherichia coli KO11FL hypothetical protein YP_005279989.1 4623628 D 595495 CDS YP_005279990.1 378715097 11778977 complement(4624272..4625210) 1 NC_016902.1 KEGG: sbo:SBO_3963 hypothetical protein; manually curated; PFAM: protein of unknown function DUF6 transmembrane; hypothetical protein 4625210 11778977 EKO11_4368 Escherichia coli KO11FL hypothetical protein YP_005279990.1 4624272 R 595495 CDS YP_005279991.1 378715098 11778978 complement(4625271..4627451) 1 NC_016902.1 KEGG: sfv:SFV_4012 catalase; hydroperoxidase HPI(I); TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 4627451 11778978 EKO11_4369 Escherichia coli KO11FL catalase/peroxidase HPI YP_005279991.1 4625271 R 595495 CDS YP_005279992.1 378715099 11779795 complement(4627780..4628670) 1 NC_016902.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: sbc:SbBS512_E4428 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 4628670 11779795 EKO11_4370 Escherichia coli KO11FL 5,10-methylenetetrahydrofolate reductase YP_005279992.1 4627780 R 595495 CDS YP_005279993.1 378715100 11778979 complement(4629019..4631451) 1 NC_016902.1 KEGG: sbo:SBO_3960 bifunctional aspartate kinase II/homoserine dehydrogenase II; TIGRFAM: aspartate kinase; PFAM: homoserine dehydrogenase; aspartate/glutamate/uridylate kinase; homoserine dehydrogenase NAD-binding; aspartate kinase 4631451 11778979 EKO11_4371 Escherichia coli KO11FL aspartate kinase YP_005279993.1 4629019 R 595495 CDS YP_005279994.1 378715101 11778980 complement(4631454..4632614) 1 NC_016902.1 KEGG: ssn:SSON_4113 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-succinylhomoserine (thiol)-lyase 4632614 11778980 EKO11_4372 Escherichia coli KO11FL O-succinylhomoserine (thiol)-lyase YP_005279994.1 4631454 R 595495 CDS YP_005279995.1 378715102 11778981 4632891..4633208 1 NC_016902.1 PFAM: Methionine repressor MetJ; KEGG: sdy:SDY_3773 transcriptional repressor protein MetJ; methionine repressor MetJ 4633208 11778981 EKO11_4373 Escherichia coli KO11FL methionine repressor MetJ YP_005279995.1 4632891 D 595495 CDS YP_005279996.1 378715103 11778982 4633456..4634436 1 NC_016902.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: eoh:ECO103_4940 putative IS621 transposase; transposase IS116/IS110/IS902 family protein 4634436 11778982 EKO11_4374 Escherichia coli KO11FL transposase IS116/IS110/IS902 family protein YP_005279996.1 4633456 D 595495 CDS YP_005279997.1 378715104 11778983 4634671..4635279 1 NC_016902.1 KEGG: ebd:ECBD_4086 putative peptidoglycan peptidase; putative peptidoglycan peptidase 4635279 11778983 EKO11_4375 Escherichia coli KO11FL putative peptidoglycan peptidase YP_005279997.1 4634671 D 595495 CDS YP_005279998.1 378715105 11778985 complement(4636186..4636509) 1 NC_016902.1 KEGG: eok:G2583_4745 hypothetical protein; hypothetical protein 4636509 11778985 EKO11_4377 Escherichia coli KO11FL hypothetical protein YP_005279998.1 4636186 R 595495 CDS YP_005279999.1 378715106 11778986 complement(4636511..4640683) 1 NC_016902.1 KEGG: eoh:ECO103_4641 rhs core protein with extension; TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein 4640683 11778986 EKO11_4378 Escherichia coli KO11FL YD repeat protein YP_005279999.1 4636511 R 595495 CDS YP_005280000.1 378715107 11778987 complement(4640843..4641055) 1 NC_016902.1 KEGG: sdy:SDY_3801 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; 50S ribosomal protein L31 4641055 11778987 EKO11_4379 Escherichia coli KO11FL 50S ribosomal protein L31 YP_005280000.1 4640843 R 595495 CDS YP_005280001.1 378715108 11778988 4641258..4643456 1 NC_016902.1 TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: eoh:ECO103_4593 primosome assembly protein PriA; SMART: DEAD-like helicase ; helicase domain protein; primosomal protein N' 4643456 11778988 EKO11_4380 Escherichia coli KO11FL primosomal protein N' YP_005280001.1 4641258 D 595495 CDS YP_005280002.1 378715109 11778989 4643612..4644637 1 NC_016902.1 KEGG: sbc:SbBS512_E4416 DNA-binding transcriptional regulator CytR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; LacI family transcriptional regulator 4644637 11778989 EKO11_4381 Escherichia coli KO11FL LacI family transcriptional regulator YP_005280002.1 4643612 D 595495 CDS YP_005280003.1 378715110 11778990 4644729..4645688 1 NC_016902.1 manually curated; TIGRFAM: cell division protein FtsN; KEGG: sbc:SbBS512_E4415 essential cell division protein FtsN; PFAM: Sporulation domain-containing protein; chaperone DnaJ domain protein; cell division protein FtsN 4645688 11778990 EKO11_4382 Escherichia coli KO11FL cell division protein FtsN YP_005280003.1 4644729 D 595495 CDS YP_005280004.1 378715111 11778991 4645781..4646311 1 NC_016902.1 PFAM: 20S proteasome A and B subunits; KEGG: sdy:SDY_3805 ATP-dependent protease peptidase subunit; 20S proteasome A and B subunits 4646311 11778991 EKO11_4383 Escherichia coli KO11FL 20S proteasome A and B subunits YP_005280004.1 4645781 D 595495 CDS YP_005280005.1 378715112 11778992 4646321..4647652 1 NC_016902.1 TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; KEGG: eoh:ECO103_4597 ATP-dependent protease ATP-binding subunit HslU; SMART: AAA ATPase; heat shock protein HslVU, ATPase subunit HslU 4647652 11778992 EKO11_4384 Escherichia coli KO11FL heat shock protein HslVU, ATPase subunit HslU YP_005280005.1 4646321 D 595495 CDS YP_005280006.1 378715113 11778993 4647719..4648645 1 NC_016902.1 KEGG: ebd:ECBD_4094 1,4-dihydroxy-2-naphthoate octaprenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4648645 11778993 EKO11_4385 Escherichia coli KO11FL 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_005280006.1 4647719 D 595495 CDS YP_005280007.1 378715114 11778994 4648738..4649223 1 NC_016902.1 KEGG: sbc:SbBS512_E4411 ribonuclease activity regulator protein RraA; TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; ribonuclease activity A regulator 4649223 11778994 EKO11_4386 Escherichia coli KO11FL ribonuclease activity A regulator YP_005280007.1 4648738 D 595495 CDS YP_005280008.1 378715115 11778995 complement(4649308..4649547) 1 NC_016902.1 PFAM: protein of unknown function DUF904; KEGG: sdy:SDY_3816 hypothetical protein; hypothetical protein 4649547 11778995 EKO11_4387 Escherichia coli KO11FL hypothetical protein YP_005280008.1 4649308 R 595495 CDS YP_005280009.1 378715116 11778996 4649978..4650823 1 NC_016902.1 KEGG: ssn:SSON_4096 facilitated diffusion of glycerol; TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; MIP family channel protein 4650823 11778996 EKO11_4388 Escherichia coli KO11FL MIP family channel protein YP_005280009.1 4649978 D 595495 CDS YP_005280010.1 378715117 11779796 4650846..4652354 1 NC_016902.1 KEGG: sbo:SBO_3943 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; glycerol kinase 4652354 11779796 EKO11_4389 Escherichia coli KO11FL glycerol kinase YP_005280010.1 4650846 D 595495 CDS YP_005280011.1 378715118 11778998 4653596..4654342 1 NC_016902.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sdy:SDY_3820 ferredoxin-NADP reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 4654342 11778998 EKO11_4391 Escherichia coli KO11FL oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_005280011.1 4653596 D 595495 CDS YP_005280012.1 378715119 11778999 complement(4654347..4654775) 1 NC_016902.1 PFAM: UspA domain-containing protein; KEGG: sbc:SbBS512_E4405 universal stress protein UspD; UspA domain-containing protein 4654775 11778999 EKO11_4392 Escherichia coli KO11FL UspA domain-containing protein YP_005280012.1 4654347 R 595495 CDS YP_005280013.1 378715120 11779000 complement(4654802..4655101) 1 NC_016902.1 PFAM: Conserved hypothetical protein CHP00743; KEGG: sbc:SbBS512_E4404 hypothetical protein; hypothetical protein 4655101 11779000 EKO11_4393 Escherichia coli KO11FL hypothetical protein YP_005280013.1 4654802 R 595495 CDS YP_005280014.1 378715121 11779001 complement(4655313..4655753) 1 NC_016902.1 PFAM: protein of unknown function DUF805; KEGG: eoh:ECO103_4607 hypothetical protein; hypothetical protein 4655753 11779001 EKO11_4394 Escherichia coli KO11FL hypothetical protein YP_005280014.1 4655313 R 595495 CDS YP_005280015.1 378715122 11779002 4655854..4656453 1 NC_016902.1 PFAM: protein of unknown function DUF1454; KEGG: sbc:SbBS512_E4400 hypothetical protein; hypothetical protein 4656453 11779002 EKO11_4395 Escherichia coli KO11FL hypothetical protein YP_005280015.1 4655854 D 595495 CDS YP_005280016.1 378715123 11779003 4656561..4657328 1 NC_016902.1 TIGRFAM: triosephosphate isomerase; KEGG: sdy:SDY_3826 triosephosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 4657328 11779003 EKO11_4396 Escherichia coli KO11FL triosephosphate isomerase YP_005280016.1 4656561 D 595495 CDS YP_005280017.1 378715124 11779004 complement(4657383..4658138) 1 NC_016902.1 TIGRFAM: CDP-diacylglycerol pyrophosphatase; KEGG: sfv:SFV_3576 CDP-diacylglycerol pyrophosphatase; PFAM: CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 4658138 11779004 EKO11_4397 Escherichia coli KO11FL CDP-diacylglycerol pyrophosphatase YP_005280017.1 4657383 R 595495 CDS YP_005280018.1 378715125 11779005 complement(4658245..4659234) 1 NC_016902.1 KEGG: ssn:SSON_4086 sulfate transporter subunit; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; sulfate ABC transporter, periplasmic sulfate-binding protein 4659234 11779005 EKO11_4398 Escherichia coli KO11FL sulfate ABC transporter, periplasmic sulfate-binding protein YP_005280018.1 4658245 R 595495 CDS YP_005280019.1 378715126 11779006 complement(4659554..4660612) 1 NC_016902.1 manually curated; TIGRFAM: 6-phosphofructokinase; KEGG: sfv:SFV_3578 6-phosphofructokinase; PFAM: phosphofructokinase; 6-phosphofructokinase 4660612 11779006 EKO11_4399 Escherichia coli KO11FL 6-phosphofructokinase YP_005280019.1 4659554 R 595495 CDS YP_005280020.1 378715127 11779007 complement(4660697..4661599) 1 NC_016902.1 KEGG: sdy:SDY_3832 ferrous iron efflux protein F; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 4661599 11779007 EKO11_4400 Escherichia coli KO11FL cation diffusion facilitator family transporter YP_005280020.1 4660697 R 595495 CDS YP_005280021.1 378715128 11779797 complement(4661836..4662054) 1 NC_016902.1 PFAM: transcriptional activator Ogr/delta; KEGG: ebr:ECB_01987 DNA-binding transcriptional regulator; transcriptional activator Ogr/delta 4662054 11779797 EKO11_4401 Escherichia coli KO11FL transcriptional activator Ogr/delta YP_005280021.1 4661836 R 595495 CDS YP_005280022.1 378715129 11779008 complement(4662136..4663299) 1 NC_016902.1 KEGG: etw:ECSP_2840 phage protein D; phage protein D 4663299 11779008 EKO11_4402 Escherichia coli KO11FL phage protein D YP_005280022.1 4662136 R 595495 CDS YP_005280023.1 378715130 11779009 complement(4663299..4663778) 1 NC_016902.1 PFAM: P2 GpU family protein; KEGG: etw:ECSP_2841 phage protein gpU; P2 GpU family protein 4663778 11779009 EKO11_4403 Escherichia coli KO11FL P2 GpU family protein YP_005280023.1 4663299 R 595495 CDS YP_005280024.1 378715131 11779798 complement(4663793..4666240) 1 NC_016902.1 KEGG: etw:ECSP_2842 phage related tail protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, TP901 family 4666240 11779798 EKO11_4404 Escherichia coli KO11FL phage tail tape measure protein, TP901 family YP_005280024.1 4663793 R 595495 CDS YP_005280025.1 378715132 11779011 complement(4666717..4667235) 1 NC_016902.1 KEGG: etw:ECSP_2844 phage tail tube protein FII; TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; phage major tail tube protein 4667235 11779011 EKO11_4406 Escherichia coli KO11FL phage major tail tube protein YP_005280025.1 4666717 R 595495 CDS YP_005280026.1 378715133 11779012 complement(4667248..4668438) 1 NC_016902.1 KEGG: etw:ECSP_2845 phage tail sheath protein FI; phage tail sheath protein FI 4668438 11779012 EKO11_4407 Escherichia coli KO11FL phage tail sheath protein FI YP_005280026.1 4667248 R 595495 CDS YP_005280027.1 378715134 11779013 complement(4668758..4669657) 1 NC_016902.1 KEGG: shw:Sputw3181_3544 hypothetical protein; hypothetical protein 4669657 11779013 EKO11_4408 Escherichia coli KO11FL hypothetical protein YP_005280027.1 4668758 R 595495 CDS YP_005280028.1 378715135 11779799 complement(4669873..4670400) 1 NC_016902.1 PFAM: tail assembly chaperone gp38; KEGG: cro:ROD_36591 phage tail fibre assembly protein; tail assembly chaperone gp38 4670400 11779799 EKO11_4409 Escherichia coli KO11FL tail assembly chaperone gp38 YP_005280028.1 4669873 R 595495 CDS YP_005280029.1 378715136 11779014 complement(4670404..4672413) 1 NC_016902.1 PFAM: tail fiber repeat 2 protein; KEGG: sbo:SBO_1394 putative bacteriophage tail protein; tail fiber repeat 2 protein 4672413 11779014 EKO11_4410 Escherichia coli KO11FL tail fiber repeat 2 protein YP_005280029.1 4670404 R 595495 CDS YP_005280030.1 378715137 11779015 complement(4672424..4672954) 1 NC_016902.1 TIGRFAM: phage tail protein I; KEGG: ebr:ECB_01995 hypothetical protein; phage tail protein I 4672954 11779015 EKO11_4411 Escherichia coli KO11FL phage tail protein I YP_005280030.1 4672424 R 595495 CDS YP_005280031.1 378715138 11779800 complement(4672947..4673855) 1 NC_016902.1 PFAM: Baseplate J family protein; KEGG: etw:ECSP_2852 baseplate assembly protein; baseplate J family protein 4673855 11779800 EKO11_4412 Escherichia coli KO11FL baseplate J family protein YP_005280031.1 4672947 R 595495 CDS YP_005280032.1 378715139 11779016 complement(4673860..4674207) 1 NC_016902.1 PFAM: GPW/gp25 family protein; KEGG: etw:ECSP_2853 phage baseplate protein; GPW/gp25 family protein 4674207 11779016 EKO11_4413 Escherichia coli KO11FL GPW/gp25 family protein YP_005280032.1 4673860 R 595495 CDS YP_005280033.1 378715140 11779017 complement(4674204..4674839) 1 NC_016902.1 TIGRFAM: phage baseplate assembly protein V; KEGG: ebr:ECB_01998 hypothetical protein; phage baseplate assembly protein V 4674839 11779017 EKO11_4414 Escherichia coli KO11FL phage baseplate assembly protein V YP_005280033.1 4674204 R 595495 CDS YP_005280034.1 378715141 11779801 complement(4674906..4675358) 1 NC_016902.1 TIGRFAM: phage virion morphogenesis protein; KEGG: etw:ECSP_2855 phage tail protein; phage virion morphogenesis protein 4675358 11779801 EKO11_4415 Escherichia coli KO11FL phage virion morphogenesis protein YP_005280034.1 4674906 R 595495 CDS YP_005280035.1 378715142 11779018 complement(4675351..4675818) 1 NC_016902.1 KEGG: etw:ECSP_2856 P2 phage tail completion protein R, GpR; P2 phage tail completion protein R, GpR 4675818 11779018 EKO11_4416 Escherichia coli KO11FL P2 phage tail completion protein R, GpR YP_005280035.1 4675351 R 595495 CDS YP_005280036.1 378715143 11779019 complement(4675781..4675939) 1 NC_016902.1 KEGG: etw:ECSP_2857 phage lysis protein LysC; phage lysis protein LysC 4675939 11779019 EKO11_4417 Escherichia coli KO11FL phage lysis protein LysC YP_005280036.1 4675781 R 595495 CDS YP_005280037.1 378715144 11779020 complement(4675926..4676351) 1 NC_016902.1 TIGRFAM: phage lysis regulatory protein, LysB family; KEGG: etw:ECSP_2858 phage lysis timing protein LysB; phage lysis regulatory protein, LysB family 4676351 11779020 EKO11_4418 Escherichia coli KO11FL phage lysis regulatory protein, LysB family YP_005280037.1 4675926 R 595495 CDS YP_005280038.1 378715145 11779021 complement(4676339..4676764) 1 NC_016902.1 KEGG: etw:ECSP_2859 phage lysis protein LysA; phage lysis protein LysA 4676764 11779021 EKO11_4419 Escherichia coli KO11FL phage lysis protein LysA YP_005280038.1 4676339 R 595495 CDS YP_005280039.1 378715146 11779022 complement(4676779..4677276) 1 NC_016902.1 KEGG: etw:ECSP_2860 phage lysozyme; PFAM: glycoside hydrolase family 24; lysozyme 4677276 11779022 EKO11_4420 Escherichia coli KO11FL lysozyme YP_005280039.1 4676779 R 595495 CDS YP_005280040.1 378715147 11779023 complement(4677276..4677557) 1 NC_016902.1 PFAM: holin family 2; KEGG: etw:ECSP_2861 hypothetical protein; holin family 2 4677557 11779023 EKO11_4421 Escherichia coli KO11FL holin family 2 YP_005280040.1 4677276 R 595495 CDS YP_005280041.1 378715148 11779024 complement(4677561..4677764) 1 NC_016902.1 PFAM: tail X family protein; KEGG: etw:ECSP_2862 P2-like prophage tail protein X; tail X family protein 4677764 11779024 EKO11_4422 Escherichia coli KO11FL tail X family protein YP_005280041.1 4677561 R 595495 CDS YP_005280042.1 378715149 11779025 complement(4677764..4678273) 1 NC_016902.1 PFAM: head completion protein; KEGG: etw:ECSP_2863 capsid completion protein; head completion protein 4678273 11779025 EKO11_4423 Escherichia coli KO11FL head completion protein YP_005280042.1 4677764 R 595495 CDS YP_005280043.1 378715150 11779802 complement(4678373..4679116) 1 NC_016902.1 PFAM: small terminase subunit; KEGG: etw:ECSP_2864 small terminase subunit; small terminase subunit 4679116 11779802 EKO11_4424 Escherichia coli KO11FL small terminase subunit YP_005280043.1 4678373 R 595495 CDS YP_005280044.1 378715151 11779026 complement(4679120..4680193) 1 NC_016902.1 KEGG: etw:ECSP_2865 phage major capsid protein, P2 family; TIGRFAM: phage major capsid protein, P2 family; PFAM: major capsid protein P2; phage major capsid protein, P2 family 4680193 11779026 EKO11_4425 Escherichia coli KO11FL phage major capsid protein, P2 family YP_005280044.1 4679120 R 595495 CDS YP_005280045.1 378715152 11779027 complement(4680252..4681106) 1 NC_016902.1 PFAM: capsid scaffolding; KEGG: etw:ECSP_2866 phage capsid scaffolding protein GpO; capsid scaffolding 4681106 11779027 EKO11_4426 Escherichia coli KO11FL capsid scaffolding YP_005280045.1 4680252 R 595495 CDS YP_005280046.1 378715153 11779028 4681280..4683052 1 NC_016902.1 KEGG: etw:ECSP_2867 phage large terminase subunit GpP; phage large terminase subunit GpP 4683052 11779028 EKO11_4427 Escherichia coli KO11FL phage large terminase subunit GpP YP_005280046.1 4681280 D 595495 CDS YP_005280047.1 378715154 11779029 4683052..4684086 1 NC_016902.1 KEGG: etw:ECSP_2868 phage capsid protein; TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein; phage portal protein, PBSX family 4684086 11779029 EKO11_4428 Escherichia coli KO11FL phage portal protein, PBSX family YP_005280047.1 4683052 D 595495 CDS YP_005280048.1 378715155 11779030 4684502..4685575 1 NC_016902.1 KEGG: ent:Ent638_0467 hypothetical protein; hypothetical protein 4685575 11779030 EKO11_4429 Escherichia coli KO11FL hypothetical protein YP_005280048.1 4684502 D 595495 CDS YP_005280049.1 378715156 11779031 4685580..4686605 1 NC_016902.1 KEGG: ent:Ent638_0468 hypothetical protein; hypothetical protein 4686605 11779031 EKO11_4430 Escherichia coli KO11FL hypothetical protein YP_005280049.1 4685580 D 595495 CDS YP_005280050.1 378715157 11779032 complement(4686602..4687540) 1 NC_016902.1 KEGG: pam:PANA_3164 HsdRM; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 4687540 11779032 EKO11_4431 Escherichia coli KO11FL DNA-cytosine methyltransferase YP_005280050.1 4686602 R 595495 CDS YP_005280051.1 378715158 11779033 complement(4687989..4688444) 1 NC_016902.1 PFAM: protein of unknown function DUF437; KEGG: see:SNSL254_A2943 GP91; hypothetical protein 4688444 11779033 EKO11_4432 Escherichia coli KO11FL hypothetical protein YP_005280051.1 4687989 R 595495 CDS YP_005280052.1 378715159 11779034 complement(4688441..4690726) 1 NC_016902.1 PFAM: replication gene A; KEGG: etw:ECSP_2873 phage replication initiation protein; replication protein A 4690726 11779034 EKO11_4433 Escherichia coli KO11FL replication protein A YP_005280052.1 4688441 R 595495 CDS YP_005280053.1 378715160 11779035 complement(4690716..4690991) 1 NC_016902.1 KEGG: ebr:ECB_02005 hypothetical protein; hypothetical protein 4690991 11779035 EKO11_4434 Escherichia coli KO11FL hypothetical protein YP_005280053.1 4690716 R 595495 CDS YP_005280054.1 378715161 11779036 complement(4690988..4691212) 1 NC_016902.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: ebr:ECB_02006 hypothetical protein; phage/conjugal plasmid C-4 type zinc finger protein, TraR family 4691212 11779036 EKO11_4435 Escherichia coli KO11FL phage/conjugal plasmid C-4 type zinc finger protein, TraR family YP_005280054.1 4690988 R 595495 CDS YP_005280055.1 378715162 11779037 complement(4691212..4691514) 1 NC_016902.1 KEGG: ebr:ECB_02007 hypothetical protein; hypothetical protein 4691514 11779037 EKO11_4436 Escherichia coli KO11FL hypothetical protein YP_005280055.1 4691212 R 595495 CDS YP_005280056.1 378715163 11779038 complement(4691514..4691738) 1 NC_016902.1 KEGG: etw:ECSP_2877 hypothetical protein; hypothetical protein 4691738 11779038 EKO11_4437 Escherichia coli KO11FL hypothetical protein YP_005280056.1 4691514 R 595495 CDS YP_005280057.1 378715164 11779039 complement(4691802..4692302) 1 NC_016902.1 KEGG: etw:ECSP_2878 replication gene B protein; replication protein B 4692302 11779039 EKO11_4438 Escherichia coli KO11FL replication protein B YP_005280057.1 4691802 R 595495 CDS YP_005280058.1 378715165 11779040 complement(4692299..4692496) 1 NC_016902.1 KEGG: etw:ECSP_2879 hypothetical protein; hypothetical protein 4692496 11779040 EKO11_4439 Escherichia coli KO11FL hypothetical protein YP_005280058.1 4692299 R 595495 CDS YP_005280059.1 378715166 11779041 complement(4692472..4692744) 1 NC_016902.1 PFAM: Regulatory phage protein Cox; KEGG: see:SNSL254_A4349 Cox protein; Regulatory phage protein Cox 4692744 11779041 EKO11_4440 Escherichia coli KO11FL Regulatory phage protein Cox YP_005280059.1 4692472 R 595495 CDS YP_005280060.1 378715167 11779042 4692897..4693190 1 NC_016902.1 KEGG: eoj:ECO26_2442 putative repressor protein C; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 4693190 11779042 EKO11_4441 Escherichia coli KO11FL helix-turn-helix domain-containing protein YP_005280060.1 4692897 D 595495 CDS YP_005280061.1 378715168 11779043 4693260..4694240 1 NC_016902.1 PFAM: integrase family protein; KEGG: see:SNSL254_A4348 site-specific recombinase, phage integrase family; integrase family protein 4694240 11779043 EKO11_4442 Escherichia coli KO11FL integrase family protein YP_005280061.1 4693260 D 595495 CDS YP_005280062.1 378715169 11779044 complement(4694426..4694926) 1 NC_016902.1 PFAM: protein of unknown function Spy-related; KEGG: sdy:SDY_3833 periplasmic repressor CpxP; hypothetical protein 4694926 11779044 EKO11_4443 Escherichia coli KO11FL hypothetical protein YP_005280062.1 4694426 R 595495 CDS YP_005280063.1 378715170 11779045 4695076..4695774 1 NC_016902.1 KEGG: sdy:SDY_3834 DNA-binding transcriptional regulator CpxR; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; two component transcriptional regulator, winged helix family 4695774 11779045 EKO11_4444 Escherichia coli KO11FL two component transcriptional regulator, winged helix family YP_005280063.1 4695076 D 595495 CDS YP_005280064.1 378715171 11779046 4695771..4697144 1 NC_016902.1 KEGG: sbo:SBO_3929 two-component sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 4697144 11779046 EKO11_4445 Escherichia coli KO11FL integral membrane sensor signal transduction histidine kinase YP_005280064.1 4695771 D 595495 CDS YP_005280065.1 378715172 11779047 complement(4697250..4697924) 1 NC_016902.1 PFAM: MOSC domain containing protein; 3-alpha domain protein; KEGG: sbo:SBO_3928 hypothetical protein; MOSC domain-containing protein 4697924 11779047 EKO11_4446 Escherichia coli KO11FL MOSC domain-containing protein YP_005280065.1 4697250 R 595495 CDS YP_005280066.1 378715173 11779048 complement(4698073..4699056) 1 NC_016902.1 KEGG: ssn:SSON_4079 2-keto-3-deoxygluconate permease; TIGRFAM: 2-keto-3-deoxygluconate transporter; PFAM: 2-keto-3-deoxygluconate permease; 2-keto-3-deoxygluconate transporter 4699056 11779048 EKO11_4447 Escherichia coli KO11FL 2-keto-3-deoxygluconate transporter YP_005280066.1 4698073 R 595495 CDS YP_005280067.1 378715174 11779049 complement(4699316..4699936) 1 NC_016902.1 PFAM: Manganese/iron superoxide dismutase-like; KEGG: sbc:SbBS512_E4387 superoxide dismutase; manganese/iron superoxide dismutase-like protein 4699936 11779049 EKO11_4448 Escherichia coli KO11FL manganese/iron superoxide dismutase-like protein YP_005280067.1 4699316 R 595495 CDS YP_005280068.1 378715175 11779050 4700221..4701255 1 NC_016902.1 KEGG: sbc:SbBS512_E4385 rhamnose-proton symporter; TIGRFAM: L-rhamnose-proton symporter, RhaT family, DMT superfamily; PFAM: RhaT l-rhamnose-proton symport 2; L-rhamnose-proton symporter 4701255 11779050 EKO11_4449 Escherichia coli KO11FL L-rhamnose-proton symporter YP_005280068.1 4700221 D 595495 CDS YP_005280069.1 378715176 11779051 complement(4701252..4702190) 1 NC_016902.1 KEGG: sfx:S3765 transcriptional activator RhaR; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 4702190 11779051 EKO11_4450 Escherichia coli KO11FL AraC family transcriptional regulator YP_005280069.1 4701252 R 595495 CDS YP_005280070.1 378715177 11779052 complement(4702174..4703010) 1 NC_016902.1 KEGG: sbo:SBO_3923 transcriptional activator RhaS; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 4703010 11779052 EKO11_4451 Escherichia coli KO11FL AraC family transcriptional regulator YP_005280070.1 4702174 R 595495 CDS YP_005280071.1 378715178 11779803 4703298..4704767 1 NC_016902.1 KEGG: eoh:ECO103_4623 rhamnulokinase; TIGRFAM: rhamnulokinase; PFAM: Carbohydrate kinase, FGGY-like; rhamnulokinase 4704767 11779803 EKO11_4452 Escherichia coli KO11FL rhamnulokinase YP_005280071.1 4703298 D 595495 CDS YP_005280072.1 378715179 11779053 4704764..4706023 1 NC_016902.1 TIGRFAM: L-rhamnose isomerase; KEGG: ebw:BWG_3573 L-rhamnose isomerase; PFAM: L-rhamnose isomerase; L-rhamnose isomerase 4706023 11779053 EKO11_4453 Escherichia coli KO11FL L-rhamnose isomerase YP_005280072.1 4704764 D 595495 CDS YP_005280073.1 378715180 11779054 4706265..4707089 1 NC_016902.1 TIGRFAM: rhamnulose-1-phosphate aldolase; KEGG: eoh:ECO103_4625 rhamnulose-1-phosphate aldolase; PFAM: class II aldolase/adducin family protein; rhamnulose-1-phosphate aldolase 4707089 11779054 EKO11_4454 Escherichia coli KO11FL rhamnulose-1-phosphate aldolase YP_005280073.1 4706265 D 595495 CDS YP_005280074.1 378715181 11779804 4707099..4707413 1 NC_016902.1 KEGG: ssn:SSON_4071 hypothetical protein; TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; L-rhamnose 1-epimerase 4707413 11779804 EKO11_4455 Escherichia coli KO11FL L-rhamnose 1-epimerase YP_005280074.1 4707099 D 595495 CDS YP_005280075.1 378715182 11779055 4707714..4708160 1 NC_016902.1 KEGG: sbo:SBO_3916 putative fructose-like phosphotransferase system subunit EIIA; TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; putative PTS IIA-like nitrogen-regulatory protein PtsN 4708160 11779055 EKO11_4456 Escherichia coli KO11FL putative PTS IIA-like nitrogen-regulatory protein PtsN YP_005280075.1 4707714 D 595495 CDS YP_005280076.1 378715183 11779056 4708171..4709622 1 NC_016902.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; KEGG: eoh:ECO103_4628 putative PTS system transporter subunits IIBC; PFAM: phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit; PTS system fructose subfamily transporter subunit IIC 4709622 11779056 EKO11_4457 Escherichia coli KO11FL PTS system fructose subfamily transporter subunit IIC YP_005280076.1 4708171 D 595495 CDS YP_005280077.1 378715184 11779057 4709612..4710682 1 NC_016902.1 KEGG: eoh:ECO103_4629 putative fructose-specific phosphotransferase system protein FrvX; PFAM: peptidase M42 family protein; cellulase 4710682 11779057 EKO11_4458 Escherichia coli KO11FL cellulase YP_005280077.1 4709612 D 595495 CDS YP_005280078.1 378715185 11779058 4710682..4712430 1 NC_016902.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ssn:SSON_4067 putative frv operon regulatory protein; transcriptional antiterminator BglG 4712430 11779058 EKO11_4459 Escherichia coli KO11FL transcriptional antiterminator BglG YP_005280078.1 4710682 D 595495 CDS YP_005280079.1 378715186 11779059 complement(4712480..4713520) 1 NC_016902.1 KEGG: eoh:ECO103_4631 hypothetical protein; hypothetical protein 4713520 11779059 EKO11_4460 Escherichia coli KO11FL hypothetical protein YP_005280079.1 4712480 R 595495 CDS YP_005280080.1 378715187 11779060 complement(4713673..4714506) 1 NC_016902.1 KEGG: eok:G2583_4699 ApaG; TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; formate dehydrogenase family accessory protein FdhD 4714506 11779060 EKO11_4461 Escherichia coli KO11FL formate dehydrogenase family accessory protein FdhD YP_005280080.1 4713673 R 595495 CDS YP_005280081.1 378715188 11779061 4714700..4715287 1 NC_016902.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: sbo:SBO_3908 formate dehydrogenase-O, major subunit; molybdopterin oxidoreductase Fe4S4 region 4715287 11779061 EKO11_4462 Escherichia coli KO11FL molybdopterin oxidoreductase Fe4S4 region YP_005280081.1 4714700 D 595495 CDS YP_005280082.1 378715189 11779062 4715336..4717750 1 NC_016902.1 TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: ssn:SSON_4063 formate dehydrogenase-O, major subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 4717750 11779062 EKO11_4463 Escherichia coli KO11FL formate dehydrogenase subunit alpha YP_005280082.1 4715336 D 595495 CDS YP_005280083.1 378715190 11779063 4717763..4718665 1 NC_016902.1 KEGG: sbc:SbBS512_E4372 formate dehydrogenase-O, iron-sulfur subunit; TIGRFAM: formate dehydrogenase, beta subunit; PFAM: Formate dehydrogenase transmembrane domain protein; formate dehydrogenase subunit beta 4718665 11779063 EKO11_4464 Escherichia coli KO11FL formate dehydrogenase subunit beta YP_005280083.1 4717763 D 595495 CDS YP_005280084.1 378715191 11779064 4718662..4719297 1 NC_016902.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sdy:SDY_3851 formate dehydrogenase-O subunit gamma; formate dehydrogenase subunit gamma 4719297 11779064 EKO11_4465 Escherichia coli KO11FL formate dehydrogenase subunit gamma YP_005280084.1 4718662 D 595495 CDS YP_005280085.1 378715192 11779065 4719294..4720223 1 NC_016902.1 KEGG: sdy:SDY_3852 formate dehydrogenase accessory protein FdhE; TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; formate dehydrogenase accessory protein FdhE 4720223 11779065 EKO11_4466 Escherichia coli KO11FL formate dehydrogenase accessory protein FdhE YP_005280085.1 4719294 D 595495 CDS YP_005280086.1 378715193 11779066 complement(4720443..4720553) 1 NC_016902.1 KEGG: ebd:ECBD_4135 hypothetical protein; hypothetical protein 4720553 11779066 EKO11_4467 Escherichia coli KO11FL hypothetical protein YP_005280086.1 4720443 R 595495 CDS YP_005280087.1 378715194 11779067 complement(4720553..4720795) 1 NC_016902.1 KEGG: sbc:SbBS512_E4369 hypothetical protein; hypothetical protein 4720795 11779067 EKO11_4468 Escherichia coli KO11FL hypothetical protein YP_005280087.1 4720553 R 595495 CDS YP_005280088.1 378715195 11779068 complement(4721014..4721232) 1 NC_016902.1 KEGG: sfv:SFV_3606 hypothetical protein; hypothetical protein 4721232 11779068 EKO11_4469 Escherichia coli KO11FL hypothetical protein YP_005280088.1 4721014 R 595495 CDS YP_005280089.1 378715196 11779069 complement(4721659..4721751) 1 NC_016902.1 hypothetical protein 4721751 11779069 EKO11_4470 Escherichia coli KO11FL hypothetical protein YP_005280089.1 4721659 R 595495 CDS YP_005280090.1 378715197 11779070 complement(4721837..4722127) 1 NC_016902.1 KEGG: eoh:ECO103_4280 putative DNA-binding transcriptional regulator, MerR family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; transcriptional regulator, XRE family 4722127 11779070 EKO11_4471 Escherichia coli KO11FL transcriptional regulator, XRE family YP_005280090.1 4721837 R 595495 CDS YP_005280091.1 378715198 11779071 complement(4722128..4722439) 1 NC_016902.1 KEGG: eoh:ECO103_4281 hypothetical protein; hypothetical protein 4722439 11779071 EKO11_4472 Escherichia coli KO11FL hypothetical protein YP_005280091.1 4722128 R 595495 CDS YP_005280092.1 378715199 11779072 4722668..4723576 1 NC_016902.1 KEGG: eoh:ECO103_4282 putative lipase; putative lipase 4723576 11779072 EKO11_4473 Escherichia coli KO11FL putative lipase YP_005280092.1 4722668 D 595495 CDS YP_005280093.1 378715200 11779073 complement(4723640..4724581) 1 NC_016902.1 KEGG: sbo:SBO_3902 putative acetyltransferase; TIGRFAM: thioesterase domain protein; PFAM: Thioesterase putative; GCN5-related N-acetyltransferase; thioesterase domain-containing protein 4724581 11779073 EKO11_4474 Escherichia coli KO11FL thioesterase domain-containing protein YP_005280093.1 4723640 R 595495 CDS YP_005280094.1 378715201 11779074 complement(4724626..4725063) 1 NC_016902.1 KEGG: sbc:SbBS512_E4365 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 4725063 11779074 EKO11_4475 Escherichia coli KO11FL D-tyrosyl-tRNA(Tyr) deacylase YP_005280094.1 4724626 R 595495 CDS YP_005280095.1 378715202 11779075 complement(4725060..4725932) 1 NC_016902.1 KEGG: sdy:SDY_3857 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; ribonuclease BN 4725932 11779075 EKO11_4476 Escherichia coli KO11FL ribonuclease BN YP_005280095.1 4725060 R 595495 CDS YP_005280096.1 378715203 11779076 complement(4725926..4726525) 1 NC_016902.1 KEGG: sbc:SbBS512_E4363 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 4726525 11779076 EKO11_4477 Escherichia coli KO11FL HAD-superfamily hydrolase YP_005280096.1 4725926 R 595495 CDS YP_005280097.1 378715204 11779077 complement(4726624..4727409) 1 NC_016902.1 KEGG: ebd:ECBD_4143 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; DeoR family transcriptional regulator 4727409 11779077 EKO11_4478 Escherichia coli KO11FL DeoR family transcriptional regulator YP_005280097.1 4726624 R 595495 CDS YP_005280098.1 378715205 11779078 complement(4727443..4728339) 1 NC_016902.1 PFAM: PfkB domain protein; KEGG: ebd:ECBD_4144 PfkB domain protein; PfkB domain-containing protein 4728339 11779078 EKO11_4479 Escherichia coli KO11FL PfkB domain-containing protein YP_005280098.1 4727443 R 595495 CDS YP_005280099.1 378715206 11779805 4728507..4729403 1 NC_016902.1 KEGG: sfv:SFV_3617 putative dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 4729403 11779805 EKO11_4480 Escherichia coli KO11FL 3-hydroxyisobutyrate dehydrogenase YP_005280099.1 4728507 D 595495 CDS YP_005280100.1 378715207 11779806 4729427..4730305 1 NC_016902.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: ebd:ECBD_4146 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 4730305 11779806 EKO11_4481 Escherichia coli KO11FL deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_005280100.1 4729427 D 595495 CDS YP_005280101.1 378715208 11779079 4730322..4731563 1 NC_016902.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: ebd:ECBD_4147 N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase 4731563 11779079 EKO11_4482 Escherichia coli KO11FL N-acylglucosamine 2-epimerase YP_005280101.1 4730322 D 595495 CDS YP_005280102.1 378715209 11779080 4731677..4732603 1 NC_016902.1 PFAM: Aldose 1-epimerase; KEGG: sfv:SFV_3620 putative aldose-1-epimerase; aldose 1-epimerase 4732603 11779080 EKO11_4483 Escherichia coli KO11FL aldose 1-epimerase YP_005280102.1 4731677 D 595495 CDS YP_005280103.1 378715210 11779081 4732802..4734838 1 NC_016902.1 PFAM: glycoside hydrolase family 31; KEGG: ebw:BWG_3548 alpha-glucosidase; glycoside hydrolase family protein 4734838 11779081 EKO11_4484 Escherichia coli KO11FL glycoside hydrolase family protein YP_005280103.1 4732802 D 595495 CDS YP_005280104.1 378715211 11779082 4734884..4736269 1 NC_016902.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: ebw:BWG_3547 putative transporter; sugar (Glycoside-Pentoside-Hexuronide) transporter 4736269 11779082 EKO11_4485 Escherichia coli KO11FL sugar (Glycoside-Pentoside-Hexuronide) transporter YP_005280104.1 4734884 D 595495 CDS YP_005280105.1 378715212 11779083 4736312..4737715 1 NC_016902.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: eoh:ECO103_4295 putative transporter; sugar (Glycoside-Pentoside-Hexuronide) transporter 4737715 11779083 EKO11_4486 Escherichia coli KO11FL sugar (Glycoside-Pentoside-Hexuronide) transporter YP_005280105.1 4736312 D 595495 CDS YP_005280106.1 378715213 11779084 4737783..4738475 1 NC_016902.1 PFAM: Oligogalacturonate-specific porin; KEGG: eoh:ECO103_4296 outer membrane porin L; Oligogalacturonate-specific porin 4738475 11779084 EKO11_4487 Escherichia coli KO11FL Oligogalacturonate-specific porin YP_005280106.1 4737783 D 595495 CDS YP_005280107.1 378715214 11779085 complement(4738566..4739831) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: ebd:ECBD_4153 sugar phosphate permease-like protein; major facilitator superfamily protein 4739831 11779085 EKO11_4488 Escherichia coli KO11FL major facilitator superfamily protein YP_005280107.1 4738566 R 595495 CDS YP_005280108.1 378715215 11779086 complement(4739933..4740913) 1 NC_016902.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: eoh:ECO103_4298 putative sugar phosphate isomerase; xylose isomerase domain-containing protein 4740913 11779086 EKO11_4489 Escherichia coli KO11FL xylose isomerase domain-containing protein YP_005280108.1 4739933 R 595495 CDS YP_005280109.1 378715216 11779087 complement(4740921..4741631) 1 NC_016902.1 KEGG: ebd:ECBD_4155 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain-containing protein; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 4741631 11779087 EKO11_4490 Escherichia coli KO11FL GntR family transcriptional regulator YP_005280109.1 4740921 R 595495 CDS YP_005280110.1 378715217 11779088 complement(4741848..4743671) 1 NC_016902.1 KEGG: sdy:SDY_3872 GTP-binding protein; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein TypA 4743671 11779088 EKO11_4491 Escherichia coli KO11FL GTP-binding protein TypA YP_005280110.1 4741848 R 595495 CDS YP_005280111.1 378715218 11779089 4744044..4745453 1 NC_016902.1 KEGG: sdy:SDY_3873 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; glutamine synthetase, type I 4745453 11779089 EKO11_4492 Escherichia coli KO11FL glutamine synthetase, type I YP_005280111.1 4744044 D 595495 CDS YP_005280112.1 378715219 11779090 complement(4745494..4745673) 1 NC_016902.1 KEGG: plu:plu4427 hypothetical protein; hypothetical protein 4745673 11779090 EKO11_4493 Escherichia coli KO11FL hypothetical protein YP_005280112.1 4745494 R 595495 CDS YP_005280113.1 378715220 11779091 4745772..4746821 1 NC_016902.1 KEGG: ssn:SSON_4041 nitrogen regulation protein NR(II); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 4746821 11779091 EKO11_4494 Escherichia coli KO11FL signal transduction histidine kinase, nitrogen specific, NtrB YP_005280113.1 4745772 D 595495 CDS YP_005280114.1 378715221 11779092 4746833..4748242 1 NC_016902.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: sdy:SDY_3875 nitrogen regulation protein NR(I); SMART: response regulator receiver; AAA ATPase; Fis family nitrogen metabolism transcriptional regulator NtrC 4748242 11779092 EKO11_4495 Escherichia coli KO11FL Fis family nitrogen metabolism transcriptional regulator NtrC YP_005280114.1 4746833 D 595495 CDS YP_005280115.1 378715222 11779093 4748354..4748464 1 NC_016902.1 KEGG: ebd:ECBD_4160 hypothetical protein; hypothetical protein 4748464 11779093 EKO11_4496 Escherichia coli KO11FL hypothetical protein YP_005280115.1 4748354 D 595495 CDS YP_005280116.1 378715223 11779094 complement(4748654..4750027) 1 NC_016902.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; KEGG: sbc:SbBS512_E4342 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 4750027 11779094 EKO11_4497 Escherichia coli KO11FL oxygen-independent coproporphyrinogen III oxidase YP_005280116.1 4748654 R 595495 CDS YP_005280117.1 378715224 11779095 complement(4750216..4750725) 1 NC_016902.1 PFAM: protein of unknown function DUF414; KEGG: sbc:SbBS512_E4340 hypothetical protein; hypothetical protein 4750725 11779095 EKO11_4498 Escherichia coli KO11FL hypothetical protein YP_005280117.1 4750216 R 595495 CDS YP_005280118.1 378715225 11779096 4751307..4751939 1 NC_016902.1 KEGG: sdy:SDY_3878 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; ribosome biogenesis GTP-binding protein YsxC 4751939 11779096 EKO11_4499 Escherichia coli KO11FL ribosome biogenesis GTP-binding protein YsxC YP_005280118.1 4751307 D 595495 CDS YP_005280119.1 378715226 11779097 complement(4752321..4755107) 1 NC_016902.1 TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: sbc:SbBS512_E4337 DNA polymerase I; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; DNA-directed DNA polymerase; DNA polymerase I 4755107 11779097 EKO11_4500 Escherichia coli KO11FL DNA polymerase I YP_005280119.1 4752321 R 595495 CDS YP_005280120.1 378715227 11779098 4755166..4755351 1 NC_016902.1 KEGG: sbc:SbBS512_E4336 hypothetical protein; hypothetical protein 4755351 11779098 EKO11_4501 Escherichia coli KO11FL hypothetical protein YP_005280120.1 4755166 D 595495 CDS YP_005280121.1 378715228 11779807 4755471..4756403 1 NC_016902.1 KEGG: sbo:SBO_3875 putative acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4756403 11779807 EKO11_4502 Escherichia coli KO11FL phospholipid/glycerol acyltransferase YP_005280121.1 4755471 D 595495 CDS YP_005280122.1 378715229 11779099 complement(4756444..4757874) 1 NC_016902.1 PFAM: protein of unknown function DUF945; KEGG: eoi:ECO111_4682 hypothetical protein; hypothetical protein 4757874 11779099 EKO11_4503 Escherichia coli KO11FL hypothetical protein YP_005280122.1 4756444 R 595495 CDS YP_005280123.1 378715230 11779100 complement(4758028..4758654) 1 NC_016902.1 PFAM: DSBA oxidoreductase; KEGG: sbc:SbBS512_E4332 periplasmic protein disulfide isomerase I; DSBA oxidoreductase 4758654 11779100 EKO11_4504 Escherichia coli KO11FL DSBA oxidoreductase YP_005280123.1 4758028 R 595495 CDS YP_005280124.1 378715231 11779101 complement(4758671..4759657) 1 NC_016902.1 PFAM: aminoglycoside phosphotransferase; KEGG: eok:G2583_4657 putative kinase; aminoglycoside phosphotransferase 4759657 11779101 EKO11_4505 Escherichia coli KO11FL aminoglycoside phosphotransferase YP_005280124.1 4758671 R 595495 CDS YP_005280125.1 378715232 11779102 complement(4759734..4760003) 1 NC_016902.1 PFAM: protein of unknown function DUF1040; KEGG: sdy:SDY_3887 hypothetical protein; hypothetical protein 4760003 11779102 EKO11_4506 Escherichia coli KO11FL hypothetical protein YP_005280125.1 4759734 R 595495 CDS YP_005280126.1 378715233 11779103 4760073..4760657 1 NC_016902.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: eoh:ECO103_4313 molybdopterin-guanine dinucleotide biosynthesis protein MobA; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4760657 11779103 EKO11_4507 Escherichia coli KO11FL molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_005280126.1 4760073 D 595495 CDS YP_005280127.1 378715234 11779104 4760639..4761166 1 NC_016902.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; KEGG: eoh:ECO103_4314 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein MobB 4761166 11779104 EKO11_4508 Escherichia coli KO11FL molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_005280127.1 4760639 D 595495 CDS YP_005280128.1 378715235 11779110 complement(4766749..4767294) 1 NC_016902.1 KEGG: eoi:ECO111_4676 protoporphyrinogen oxidase; PFAM: flavodoxin/nitric oxide synthase; Protoporphyrinogen oxidase 4767294 11779110 EKO11_4509 Escherichia coli KO11FL Protoporphyrinogen oxidase YP_005280128.1 4766749 R 595495 CDS YP_005280129.1 378715236 11779111 complement(4767306..4768757) 1 NC_016902.1 KEGG: sdy:SDY_3896 potassium transporter; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; TrkH family potassium uptake protein 4768757 11779111 EKO11_4510 Escherichia coli KO11FL TrkH family potassium uptake protein YP_005280129.1 4767306 R 595495 CDS YP_005280130.1 378715237 11779808 complement(4768796..4769410) 1 NC_016902.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: sdy:SDY_3897 hypothetical protein; hypothetical protein 4769410 11779808 EKO11_4511 Escherichia coli KO11FL hypothetical protein YP_005280130.1 4768796 R 595495 CDS YP_005280131.1 378715238 11779809 complement(4769410..4770741) 1 NC_016902.1 KEGG: ebd:ECBD_4178 proline dipeptidase; PFAM: peptidase M24; Xaa-Pro dipeptidase 4770741 11779809 EKO11_4512 Escherichia coli KO11FL Xaa-Pro dipeptidase YP_005280131.1 4769410 R 595495 CDS YP_005280132.1 378715239 11779112 4770931..4773120 1 NC_016902.1 KEGG: eoh:ECO103_4319 multifunctional fatty acid oxidation complex subunit alpha; TIGRFAM: fatty oxidation complex, alpha subunit FadB; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; fatty acid oxidation complex subunit FadB 4773120 11779112 EKO11_4513 Escherichia coli KO11FL fatty acid oxidation complex subunit FadB YP_005280132.1 4770931 D 595495 CDS YP_005280133.1 378715240 11779113 4773130..4774293 1 NC_016902.1 KEGG: sbc:SbBS512_E4315 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA C-acyltransferase FadA; acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA C-acyltransferase FadA 4774293 11779113 EKO11_4514 Escherichia coli KO11FL acetyl-CoA C-acyltransferase FadA YP_005280133.1 4773130 D 595495 CDS YP_005280134.1 378715241 11779114 complement(4774485..4775186) 1 NC_016902.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ssn:SSON_4017 FMN reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 4775186 11779114 EKO11_4515 Escherichia coli KO11FL oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_005280134.1 4774485 R 595495 CDS YP_005280135.1 378715242 11779115 complement(4775232..4776725) 1 NC_016902.1 KEGG: ssn:SSON_4016 3-octaprenyl-4-hydroxybenzoate decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; UbiD family decarboxylase 4776725 11779115 EKO11_4516 Escherichia coli KO11FL UbiD family decarboxylase YP_005280135.1 4775232 R 595495 CDS YP_005280136.1 378715243 11779810 4776892..4777380 1 NC_016902.1 TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain-containing protein; KEGG: sdy:SDY_3903 transcriptional activator RfaH; SMART: NGN domain-containing protein; transcriptional acivator RfaH 4777380 11779810 EKO11_4517 Escherichia coli KO11FL transcriptional acivator RfaH YP_005280136.1 4776892 D 595495 CDS YP_005280137.1 378715244 11779117 complement(4778201..4778977) 1 NC_016902.1 KEGG: sbc:SbBS512_E4310 twin-arginine protein translocation system subunit TatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 4778977 11779117 EKO11_4519 Escherichia coli KO11FL Sec-independent protein translocase subunit TatC YP_005280137.1 4778201 R 595495 CDS YP_005280138.1 378715245 11779118 complement(4778980..4779495) 1 NC_016902.1 KEGG: ssn:SSON_4012 sec-independent translocase; TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein subunit TatB 4779495 11779118 EKO11_4520 Escherichia coli KO11FL twin-arginine translocation protein subunit TatB YP_005280138.1 4778980 R 595495 CDS YP_005280139.1 378715246 11779811 complement(4779499..4779768) 1 NC_016902.1 KEGG: sdy:SDY_3907 twin arginine translocase protein A; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, TatA/E family subunit 4779768 11779811 EKO11_4521 Escherichia coli KO11FL twin-arginine translocation protein, TatA/E family subunit YP_005280139.1 4779499 R 595495 CDS YP_005280140.1 378715247 11779119 complement(4779847..4781487) 1 NC_016902.1 KEGG: sdy:SDY_3908 putative ubiquinone biosynthesis protein UbiB; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain-containing protein; 2-polyprenylphenol 6-hydroxylase 4781487 11779119 EKO11_4522 Escherichia coli KO11FL 2-polyprenylphenol 6-hydroxylase YP_005280140.1 4779847 R 595495 CDS YP_005280141.1 378715248 11779120 complement(4781484..4782089) 1 NC_016902.1 PFAM: Sterol-binding domain protein; KEGG: sbc:SbBS512_E4306 hypothetical protein; Sterol-binding domain-containing protein 4782089 11779120 EKO11_4523 Escherichia coli KO11FL Sterol-binding domain-containing protein YP_005280141.1 4781484 R 595495 CDS YP_005280142.1 378715249 11779121 complement(4782103..4782858) 1 NC_016902.1 KEGG: sdy:SDY_3910 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 4782858 11779121 EKO11_4524 Escherichia coli KO11FL ubiquinone/menaquinone biosynthesis methyltransferase YP_005280142.1 4782103 R 595495 CDS YP_005280143.1 378715250 11779122 complement(4782953..4784380) 1 NC_016902.1 PFAM: protein of unknown function DUF195; KEGG: sbo:SBO_3846 DNA recombination protein RmuC; hypothetical protein 4784380 11779122 EKO11_4525 Escherichia coli KO11FL hypothetical protein YP_005280143.1 4782953 R 595495 CDS YP_005280144.1 378715251 11779123 complement(4784521..4785282) 1 NC_016902.1 KEGG: ebd:ECBD_4198 uridine phosphorylase; TIGRFAM: uridine phosphorylase; PFAM: purine or other phosphorylase family 1; uridine phosphorylase 4785282 11779123 EKO11_4526 Escherichia coli KO11FL uridine phosphorylase YP_005280144.1 4784521 R 595495 CDS YP_005280145.1 378715252 11779124 4785544..4786359 1 NC_016902.1 KEGG: sfl:SF3908 putative enzyme; Carboxymethylenebutenolidase 4786359 11779124 EKO11_4527 Escherichia coli KO11FL Carboxymethylenebutenolidase YP_005280145.1 4785544 D 595495 CDS YP_005280146.1 378715253 11779125 complement(4786398..4788659) 1 NC_016902.1 TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: eoh:ECO103_4334 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4788659 11779125 EKO11_4528 Escherichia coli KO11FL 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_005280146.1 4786398 R 595495 CDS YP_005280147.1 378715254 11779126 4788782..4789735 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ssn:SSON_4002 regulator for MetE and MetH; LysR family transcriptional regulator 4789735 11779126 EKO11_4529 Escherichia coli KO11FL LysR family transcriptional regulator YP_005280147.1 4788782 D 595495 CDS YP_005280148.1 378715255 11779127 complement(4789623..4790522) 1 NC_016902.1 KEGG: ssn:SSON_4001 hypothetical protein; TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; carboxylate/amino acid/amine transporter 4790522 11779127 EKO11_4530 Escherichia coli KO11FL carboxylate/amino acid/amine transporter YP_005280148.1 4789623 R 595495 CDS YP_005280149.1 378715256 11779128 complement(4790598..4791398) 1 NC_016902.1 KEGG: sbc:SbBS512_E4293 putative sugar phosphatase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; cof family hydrolase 4791398 11779128 EKO11_4531 Escherichia coli KO11FL cof family hydrolase YP_005280149.1 4790598 R 595495 CDS YP_005280150.1 378715257 11779812 complement(4791406..4792428) 1 NC_016902.1 KEGG: sbc:SbBS512_E4292 lysophospholipase L2; PFAM: alpha/beta hydrolase fold; lysophospholipase 4792428 11779812 EKO11_4532 Escherichia coli KO11FL lysophospholipase YP_005280150.1 4791406 R 595495 CDS YP_005280151.1 378715258 11779129 4792539..4793159 1 NC_016902.1 KEGG: sbc:SbBS512_E4291 homoserine/homoserine lactone efflux protein; TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); homoserine/threonine efflux pump 4793159 11779129 EKO11_4533 Escherichia coli KO11FL homoserine/threonine efflux pump YP_005280151.1 4792539 D 595495 CDS YP_005280152.1 378715259 11779130 complement(4793221..4793841) 1 NC_016902.1 KEGG: eok:G2583_4623 threonine efflux protein; TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); homoserine/threonine efflux pump 4793841 11779130 EKO11_4534 Escherichia coli KO11FL homoserine/threonine efflux pump YP_005280152.1 4793221 R 595495 CDS YP_005280153.1 378715260 11779131 complement(4793905..4795740) 1 NC_016902.1 TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; KEGG: eok:G2583_4622 ATP-dependent DNA helicase RecQ; SMART: HRDC domain protein; DEAD-like helicase ; helicase domain protein; ATP-dependent DNA helicase RecQ 4795740 11779131 EKO11_4535 Escherichia coli KO11FL ATP-dependent DNA helicase RecQ YP_005280153.1 4793905 R 595495 CDS YP_005280154.1 378715261 11779813 complement(4795867..4796736) 1 NC_016902.1 KEGG: sdy:SDY_3922 phospholipase A; PFAM: phospholipase A1; phospholipase A(1) 4796736 11779813 EKO11_4536 Escherichia coli KO11FL phospholipase A(1) YP_005280154.1 4795867 R 595495 CDS YP_005280155.1 378715262 11779132 4796901..4797368 1 NC_016902.1 PFAM: thioesterase superfamily protein; KEGG: sbc:SbBS512_E4287 hypothetical protein; thioesterase superfamily protein 4797368 11779132 EKO11_4537 Escherichia coli KO11FL thioesterase superfamily protein YP_005280155.1 4796901 D 595495 CDS YP_005280156.1 378715263 11779133 4797420..4798307 1 NC_016902.1 KEGG: ssn:SSON_3993 hypothetical protein; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; RarD protein, DMT superfamily transporter 4798307 11779133 EKO11_4538 Escherichia coli KO11FL RarD protein, DMT superfamily transporter YP_005280156.1 4797420 D 595495 CDS YP_005280157.1 378715264 11779134 complement(4798354..4798653) 1 NC_016902.1 KEGG: eok:G2583_4618 hypothetical protein; hypothetical protein 4798653 11779134 EKO11_4539 Escherichia coli KO11FL hypothetical protein YP_005280157.1 4798354 R 595495 CDS YP_005280158.1 378715265 11779814 complement(4799275..4799478) 1 NC_016902.1 KEGG: eok:G2583_4616 hypothetical protein; manually curated; PFAM: Mg2 transporter protein CorA family protein; Mg2 transporter protein CorA family protein 4799478 11779814 EKO11_4540 Escherichia coli KO11FL Mg2 transporter protein CorA family protein YP_005280158.1 4799275 R 595495 CDS YP_005280159.1 378715266 11779135 4799608..4800456 1 NC_016902.1 KEGG: eoj:ECO26_4769 hypothetical protein; hypothetical protein 4800456 11779135 EKO11_4541 Escherichia coli KO11FL hypothetical protein YP_005280159.1 4799608 D 595495 CDS YP_005280160.1 378715267 11779136 4800453..4800932 1 NC_016902.1 PFAM: protein of unknown function DUF943; KEGG: eoh:ECO103_4348 hypothetical protein; hypothetical protein 4800932 11779136 EKO11_4542 Escherichia coli KO11FL hypothetical protein YP_005280160.1 4800453 D 595495 CDS YP_005280161.1 378715268 11779137 complement(4800986..4801936) 1 NC_016902.1 KEGG: sdy:SDY_3929 magnesium/nickel/cobalt transporter CorA; TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; magnesium and cobalt transport protein CorA 4801936 11779137 EKO11_4543 Escherichia coli KO11FL magnesium and cobalt transport protein CorA YP_005280161.1 4800986 R 595495 CDS YP_005280162.1 378715269 11779138 4802306..4803070 1 NC_016902.1 KEGG: eok:G2583_4612 hypothetical protein; hypothetical protein 4803070 11779138 EKO11_4544 Escherichia coli KO11FL hypothetical protein YP_005280162.1 4802306 D 595495 CDS YP_005280163.1 378715270 11779139 complement(4803217..4805379) 1 NC_016902.1 KEGG: eoh:ECO103_4351 DNA-dependent helicase II; TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase; DNA helicase II 4805379 11779139 EKO11_4545 Escherichia coli KO11FL DNA helicase II YP_005280163.1 4803217 R 595495 CDS YP_005280164.1 378715271 11779140 complement(4805463..4806179) 1 NC_016902.1 KEGG: sbc:SbBS512_E4272 flavin mononucleotide phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 4806179 11779140 EKO11_4546 Escherichia coli KO11FL HAD-superfamily hydrolase YP_005280164.1 4805463 R 595495 CDS YP_005280165.1 378715272 11779141 complement(4806179..4807075) 1 NC_016902.1 KEGG: sbc:SbBS512_E4271 site-specific tyrosine recombinase XerC; TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; tyrosine recombinase XerC 4807075 11779141 EKO11_4547 Escherichia coli KO11FL tyrosine recombinase XerC YP_005280165.1 4806179 R 595495 CDS YP_005280166.1 378715273 11779142 complement(4807072..4807779) 1 NC_016902.1 PFAM: protein of unknown function DUF484; KEGG: sbc:SbBS512_E4270 hypothetical protein; hypothetical protein 4807779 11779142 EKO11_4548 Escherichia coli KO11FL hypothetical protein YP_005280166.1 4807072 R 595495 CDS YP_005280167.1 378715274 11779143 complement(4807776..4808600) 1 NC_016902.1 KEGG: sdy:SDY_3936 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; diaminopimelate epimerase 4808600 11779143 EKO11_4549 Escherichia coli KO11FL diaminopimelate epimerase YP_005280167.1 4807776 R 595495 CDS YP_005280168.1 378715275 11779815 complement(4808637..4808840) 1 NC_016902.1 KEGG: ssn:SSON_3981 hypothetical protein; hypothetical protein 4808840 11779815 EKO11_4550 Escherichia coli KO11FL hypothetical protein YP_005280168.1 4808637 R 595495 CDS YP_005280169.1 378715276 11779145 4809303..4809623 1 NC_016902.1 KEGG: sdy:SDY_3938 frataxin-like protein; TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; iron donor protein CyaY 4809623 11779145 EKO11_4552 Escherichia coli KO11FL iron donor protein CyaY YP_005280169.1 4809303 D 595495 CDS YP_005280170.1 378715277 11779816 complement(4809663..4812209) 1 NC_016902.1 KEGG: sbc:SbBS512_E4265 adenylate cyclase; PFAM: adenylate cyclase class-I; adenylate cyclase 4812209 11779816 EKO11_4553 Escherichia coli KO11FL adenylate cyclase YP_005280170.1 4809663 R 595495 CDS YP_005280171.1 378715278 11779146 4812596..4813537 1 NC_016902.1 KEGG: eoh:ECO103_4362 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 4813537 11779146 EKO11_4554 Escherichia coli KO11FL porphobilinogen deaminase YP_005280171.1 4812596 D 595495 CDS YP_005280172.1 378715279 11779147 4813534..4814274 1 NC_016902.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: eoh:ECO103_4363 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 4814274 11779147 EKO11_4555 Escherichia coli KO11FL uroporphyrinogen III synthase HEM4 YP_005280172.1 4813534 D 595495 CDS YP_005280173.1 378715280 11779148 4814296..4815495 1 NC_016902.1 KEGG: eoi:ECO111_4626 putative uroporphyrinogen III C-methyltransferase; PFAM: protein of unknown function DUF513 hemX; Uroporphyrinogen-III C-methyltransferase 4815495 11779148 EKO11_4556 Escherichia coli KO11FL Uroporphyrinogen-III C-methyltransferase YP_005280173.1 4814296 D 595495 CDS YP_005280174.1 378715281 11779149 4815498..4816694 1 NC_016902.1 KEGG: sbc:SbBS512_E4261 putative protoheme IX biogenesis protein; TIGRFAM: HemY protein; PFAM: HemY domain protein; HemY protein 4816694 11779149 EKO11_4557 Escherichia coli KO11FL HemY protein YP_005280174.1 4815498 D 595495 CDS YP_005280175.1 378715282 11779151 complement(4817618..4818853) 1 NC_016902.1 PFAM: Radical SAM domain protein; KEGG: sbo:SBO_3812 putative arylsulfatase regulator; radical SAM protein 4818853 11779151 EKO11_4559 Escherichia coli KO11FL radical SAM protein YP_005280175.1 4817618 R 595495 CDS YP_005280176.1 378715283 11779155 complement(4819539..4820924) 1 NC_016902.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_3952 putative transport protein YifK; amino acid permease 4820924 11779155 EKO11_4560 Escherichia coli KO11FL amino acid permease YP_005280176.1 4819539 R 595495 CDS YP_005280177.1 378715284 11779156 complement(4821115..4821855) 1 NC_016902.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; KEGG: sdy:SDY_3953 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 4821855 11779156 EKO11_4561 Escherichia coli KO11FL WecB/TagA/CpsF family glycosyl transferase YP_005280177.1 4821115 R 595495 CDS YP_005280178.1 378715285 11779157 complement(4821858..4823210) 1 NC_016902.1 PFAM: WzyE family protein; KEGG: sfv:SFV_3710 putative common antigen polymerase; WzyE family protein 4823210 11779157 EKO11_4562 Escherichia coli KO11FL WzyE family protein YP_005280178.1 4821858 R 595495 CDS YP_005280179.1 378715286 11779158 complement(4823207..4824286) 1 NC_016902.1 PFAM: 4-alpha-L-fucosyltransferase; KEGG: eoh:ECO103_4371 4-alpha-L-fucosyltransferase; 4-alpha-L-fucosyltransferase 4824286 11779158 EKO11_4563 Escherichia coli KO11FL 4-alpha-L-fucosyltransferase YP_005280179.1 4823207 R 595495 CDS YP_005280180.1 378715287 11779159 complement(4824283..4825533) 1 NC_016902.1 PFAM: polysaccharide biosynthesis protein; KEGG: ebd:ECBD_4247 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 4825533 11779159 EKO11_4564 Escherichia coli KO11FL polysaccharide biosynthesis protein YP_005280180.1 4824283 R 595495 CDS YP_005280181.1 378715288 11779161 complement(4825535..4826665) 1 NC_016902.1 KEGG: ssn:SSON_3963 TDP-4-oxo-6-deoxy-D-glucose transaminase; TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; TDP-4-keto-6-deoxy-D-glucose transaminase 4826665 11779161 EKO11_4565 Escherichia coli KO11FL TDP-4-keto-6-deoxy-D-glucose transaminase YP_005280181.1 4825535 R 595495 CDS YP_005280182.1 378715289 11779163 complement(4826670..4827344) 1 NC_016902.1 KEGG: eoh:ECO103_4374 TDP-fucosamine acetyltransferase; TIGRFAM: TDP-D-fucosamine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; TDP-D-fucosamine acetyltransferase 4827344 11779163 EKO11_4566 Escherichia coli KO11FL TDP-D-fucosamine acetyltransferase YP_005280182.1 4826670 R 595495 CDS YP_005280183.1 378715290 11779164 complement(4827322..4828203) 1 NC_016902.1 KEGG: sbc:SbBS512_E4132 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 4828203 11779164 EKO11_4567 Escherichia coli KO11FL glucose-1-phosphate thymidylyltransferase YP_005280183.1 4827322 R 595495 CDS YP_005280184.1 378715291 11779166 complement(4828222..4829289) 1 NC_016902.1 KEGG: ebw:BWG_3470 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase 4829289 11779166 EKO11_4568 Escherichia coli KO11FL dTDP-glucose 4,6-dehydratase YP_005280184.1 4828222 R 595495 CDS YP_005280185.1 378715292 11779167 complement(4829289..4830551) 1 NC_016902.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: sfv:SFV_3717 UDP-N-acetyl-D-mannosamine dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 4830551 11779167 EKO11_4569 Escherichia coli KO11FL nucleotide sugar dehydrogenase YP_005280185.1 4829289 R 595495 CDS YP_005280186.1 378715293 11779168 complement(4830548..4831678) 1 NC_016902.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ebd:ECBD_4253 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 4831678 11779168 EKO11_4570 Escherichia coli KO11FL UDP-N-acetylglucosamine 2-epimerase YP_005280186.1 4830548 R 595495 CDS YP_005280187.1 378715294 11779169 complement(4831734..4832780) 1 NC_016902.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: eoh:ECO103_4379 lipopolysaccharide biosynthesis protein WzzE; lipopolysaccharide biosynthesis protein 4832780 11779169 EKO11_4571 Escherichia coli KO11FL lipopolysaccharide biosynthesis protein YP_005280187.1 4831734 R 595495 CDS YP_005280188.1 378715295 11779819 complement(4832792..4833895) 1 NC_016902.1 KEGG: sdy:SDY_3964 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: Glycosyl transferase, family 4, conserved region; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4833895 11779819 EKO11_4572 Escherichia coli KO11FL undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_005280188.1 4832792 R 595495 CDS YP_005280189.1 378715296 11779170 complement(4833907..4834125) 1 NC_016902.1 KEGG: sbo:SBO_3794 hypothetical protein; hypothetical protein 4834125 11779170 EKO11_4573 Escherichia coli KO11FL hypothetical protein YP_005280189.1 4833907 R 595495 CDS YP_005280190.1 378715297 11779171 complement(4834135..4835394) 1 NC_016902.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: sdy:SDY_3966 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase; transcription termination factor Rho 4835394 11779171 EKO11_4574 Escherichia coli KO11FL transcription termination factor Rho YP_005280190.1 4834135 R 595495 CDS YP_005280191.1 378715298 11779172 complement(4835479..4835580) 1 NC_016902.1 manually curated; KEGG: sdy:SDY_3967 putative rho operon leader peptide; putative rho operon leader peptide 4835580 11779172 EKO11_4575 Escherichia coli KO11FL putative rho operon leader peptide YP_005280191.1 4835479 R 595495 CDS YP_005280192.1 378715299 11779173 complement(4835721..4836050) 1 NC_016902.1 KEGG: cko:CKO_00123 hypothetical protein; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; thioredoxin 4836050 11779173 EKO11_4576 Escherichia coli KO11FL thioredoxin YP_005280192.1 4835721 R 595495 CDS YP_005280193.1 378715300 11779174 4836181..4837446 1 NC_016902.1 KEGG: ssn:SSON_3951 ATP-dependent RNA helicase RhlB; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 4837446 11779174 EKO11_4577 Escherichia coli KO11FL DEAD/DEAH box helicase YP_005280193.1 4836181 D 595495 CDS YP_005280194.1 378715301 11779175 4837580..4839064 1 NC_016902.1 KEGG: sbc:SbBS512_E4142 guanosine pentaphosphate phosphohydrolase; PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 4839064 11779175 EKO11_4578 Escherichia coli KO11FL Ppx/GppA phosphatase YP_005280194.1 4837580 D 595495 CDS YP_005280195.1 378715302 11779176 complement(4839111..4841132) 1 NC_016902.1 KEGG: ssn:SSON_3949 ATP-dependent DNA helicase Rep; TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; ATP-dependent DNA helicase Rep 4841132 11779176 EKO11_4579 Escherichia coli KO11FL ATP-dependent DNA helicase Rep YP_005280195.1 4839111 R 595495 CDS YP_005280196.1 378715303 11779177 4841349..4841798 1 NC_016902.1 KEGG: eoi:ECO111_4602 hypothetical protein; hypothetical protein 4841798 11779177 EKO11_4580 Escherichia coli KO11FL hypothetical protein YP_005280196.1 4841349 D 595495 CDS YP_005280197.1 378715304 11779178 4841997..4842278 1 NC_016902.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cro:ROD_39731 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 4842278 11779178 EKO11_4581 Escherichia coli KO11FL PpiC-type peptidyl-prolyl cis-trans isomerase YP_005280197.1 4841997 D 595495 CDS YP_005280198.1 378715305 11779179 complement(4842365..4843840) 1 NC_016902.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: sfv:SFV_3729 ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain-containing protein; ketol-acid reductoisomerase 4843840 11779179 EKO11_4582 Escherichia coli KO11FL ketol-acid reductoisomerase YP_005280198.1 4842365 R 595495 CDS YP_005280199.1 378715306 11779180 4843990..4844883 1 NC_016902.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eoj:ECO26_4813 DNA-binding transcriptional regulator IlvY; LysR family transcriptional regulator 4844883 11779180 EKO11_4583 Escherichia coli KO11FL LysR family transcriptional regulator YP_005280199.1 4843990 D 595495 CDS YP_005280200.1 378715307 11779181 complement(4844935..4846479) 1 NC_016902.1 KEGG: ssn:SSON_3943 threonine dehydratase; TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Threonine dehydratase domain-containing protein; threonine dehydratase, biosynthetic 4846479 11779181 EKO11_4584 Escherichia coli KO11FL threonine dehydratase, biosynthetic YP_005280200.1 4844935 R 595495 CDS YP_005280201.1 378715308 11779182 complement(4846482..4848332) 1 NC_016902.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: sfv:SFV_3731 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 4848332 11779182 EKO11_4585 Escherichia coli KO11FL dihydroxy-acid dehydratase YP_005280201.1 4846482 R 595495 CDS YP_005280202.1 378715309 11779183 complement(4848397..4849326) 1 NC_016902.1 KEGG: sdy:SDY_3978 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; branched-chain amino acid aminotransferase 4849326 11779183 EKO11_4586 Escherichia coli KO11FL branched-chain amino acid aminotransferase YP_005280202.1 4848397 R 595495 CDS YP_005280203.1 378715310 11779184 complement(4849346..4849609) 1 NC_016902.1 KEGG: sdy:SDY_3979 acetolactate synthase 2 regulatory subunit; Acetolactate synthase 4849609 11779184 EKO11_4587 Escherichia coli KO11FL Acetolactate synthase YP_005280203.1 4849346 R 595495 CDS YP_005280204.1 378715311 11779185 complement(4849606..4851252) 1 NC_016902.1 KEGG: eoh:ECO103_4396 acetolactate synthase 2 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; acetolactate synthase large subunit 4851252 11779185 EKO11_4588 Escherichia coli KO11FL acetolactate synthase large subunit YP_005280204.1 4849606 R 595495 CDS YP_005280205.1 378715312 11779186 4851842..4853362 1 NC_016902.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: eoh:ECO103_4398 putative ATP-dependent protease; SMART: AAA ATPase; Mg chelatase subunit ChlI 4853362 11779186 EKO11_4589 Escherichia coli KO11FL Mg chelatase subunit ChlI YP_005280205.1 4851842 D 595495 CDS YP_005280206.1 378715313 11779820 complement(4853387..4853725) 1 NC_016902.1 PFAM: protein of unknown function DUF413; KEGG: sdy:SDY_3984 hypothetical protein; hypothetical protein 4853725 11779820 EKO11_4590 Escherichia coli KO11FL hypothetical protein YP_005280206.1 4853387 R 595495 CDS YP_005280207.1 378715314 11779821 4853844..4854683 1 NC_016902.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_3985 transcriptional regulator HdfR; LysR family transcriptional regulator 4854683 11779821 EKO11_4591 Escherichia coli KO11FL LysR family transcriptional regulator YP_005280207.1 4853844 D 595495 CDS YP_005280208.1 378715315 11779192 4860483..4861175 1 NC_016902.1 KEGG: eoh:ECO103_4401 putative transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 4861175 11779192 EKO11_4592 Escherichia coli KO11FL GntR family transcriptional regulator YP_005280208.1 4860483 D 595495 CDS YP_005280209.1 378715316 11779193 4861198..4862625 1 NC_016902.1 KEGG: eoi:ECO111_4588 putative multidrug or homocysteine efflux system protein HsrA; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter 4862625 11779193 EKO11_4593 Escherichia coli KO11FL EmrB/QacA subfamily drug resistance transporter YP_005280209.1 4861198 D 595495 CDS YP_005280210.1 378715317 11779196 complement(4863189..4863524) 1 NC_016902.1 PFAM: inner-membrane translocator; KEGG: sdy:SDY_3997 ribose ABC transporter permease protein; inner-membrane translocator 4863524 11779196 EKO11_4595 Escherichia coli KO11FL inner-membrane translocator YP_005280210.1 4863189 R 595495 CDS YP_005280211.1 378715318 11779198 complement(4863529..4865034) 1 NC_016902.1 KEGG: ebd:ECBD_4281 D-ribose transporter ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4865034 11779198 EKO11_4596 Escherichia coli KO11FL ABC transporter YP_005280211.1 4863529 R 595495 CDS YP_005280212.1 378715319 11779200 complement(4865042..4865461) 1 NC_016902.1 PFAM: RbsD or FucU transport; KEGG: sbc:SbBS512_E4172 D-ribose pyranase; transport protein RbsD/FucU 4865461 11779200 EKO11_4597 Escherichia coli KO11FL transport protein RbsD/FucU YP_005280212.1 4865042 R 595495 CDS YP_005280213.1 378715320 11779202 complement(4865628..4867496) 1 NC_016902.1 KEGG: ebd:ECBD_4285 potassium transport protein Kup; TIGRFAM: potassium uptake protein; PFAM: K potassium transporter; potassium uptake protein 4867496 11779202 EKO11_4598 Escherichia coli KO11FL potassium uptake protein YP_005280213.1 4865628 R 595495 CDS YP_005280214.1 378715321 11779204 4867719..4869215 1 NC_016902.1 KEGG: eoi:ECO111_4580 regulatory ATPase RavA; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATPase 4869215 11779204 EKO11_4599 Escherichia coli KO11FL ATPase YP_005280214.1 4867719 D 595495 CDS YP_005280215.1 378715322 11779205 4869209..4870660 1 NC_016902.1 SMART: von Willebrand factor type A; KEGG: sbo:SBO_3742 hypothetical protein; von Willebrand factor type A 4870660 11779205 EKO11_4600 Escherichia coli KO11FL von Willebrand factor type A YP_005280215.1 4869209 D 595495 CDS YP_005280216.1 378715323 11779206 complement(4870665..4871657) 1 NC_016902.1 TIGRFAM: aspartate/ammonia ligase; KEGG: sdy:SDY_4004 asparagine synthetase AsnA; PFAM: aspartate--ammonia ligase; aspartate/ammonia ligase 4871657 11779206 EKO11_4601 Escherichia coli KO11FL aspartate/ammonia ligase YP_005280216.1 4870665 R 595495 CDS YP_005280217.1 378715324 11779207 4871809..4872267 1 NC_016902.1 KEGG: sdy:SDY_4005 DNA-binding transcriptional regulator AsnC; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator 4872267 11779207 EKO11_4602 Escherichia coli KO11FL AsnC family transcriptional regulator YP_005280217.1 4871809 D 595495 CDS YP_005280218.1 378715325 11779208 4872357..4872800 1 NC_016902.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: sbc:SbBS512_E4179 flavodoxin; flavodoxin/nitric oxide synthase 4872800 11779208 EKO11_4603 Escherichia coli KO11FL flavodoxin/nitric oxide synthase YP_005280218.1 4872357 D 595495 CDS YP_005280219.1 378715326 11779209 4873179..4875068 1 NC_016902.1 KEGG: sbo:SBO_3746 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; glucose inhibited division protein A 4875068 11779209 EKO11_4604 Escherichia coli KO11FL glucose inhibited division protein A YP_005280219.1 4873179 D 595495 CDS YP_005280220.1 378715327 11779210 4875132..4875755 1 NC_016902.1 KEGG: sbc:SbBS512_E4181 16S rRNA methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; methyltransferase GidB 4875755 11779210 EKO11_4605 Escherichia coli KO11FL methyltransferase GidB YP_005280220.1 4875132 D 595495 CDS YP_005280221.1 378715328 11779211 4876372..4876752 1 NC_016902.1 PFAM: ATP synthase I chain; KEGG: sdy:SDY_4009 F0F1 ATP synthase subunit I; ATP synthase I chain 4876752 11779211 EKO11_4606 Escherichia coli KO11FL ATP synthase I chain YP_005280221.1 4876372 D 595495 CDS YP_005280222.1 378715329 11779212 4876761..4877576 1 NC_016902.1 KEGG: sbc:SbBS512_E4183 F0F1 ATP synthase subunit A; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; ATP synthase F0 subunit A 4877576 11779212 EKO11_4607 Escherichia coli KO11FL ATP synthase F0 subunit A YP_005280222.1 4876761 D 595495 CDS YP_005280223.1 378715330 11779213 4877623..4877862 1 NC_016902.1 KEGG: cro:ROD_40031 ATP synthase subunit C; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; ATP synthase F0 subunit C 4877862 11779213 EKO11_4608 Escherichia coli KO11FL ATP synthase F0 subunit C YP_005280223.1 4877623 D 595495 CDS YP_005280224.1 378715331 11779214 4877924..4878394 1 NC_016902.1 KEGG: sdy:SDY_4012 F0F1 ATP synthase subunit B; TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; ATP synthase F0 subunit B 4878394 11779214 EKO11_4609 Escherichia coli KO11FL ATP synthase F0 subunit B YP_005280224.1 4877924 D 595495 CDS YP_005280225.1 378715332 11779215 4878409..4878942 1 NC_016902.1 KEGG: sbc:SbBS512_E4186 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; ATP synthase F1 subunit delta 4878942 11779215 EKO11_4610 Escherichia coli KO11FL ATP synthase F1 subunit delta YP_005280225.1 4878409 D 595495 CDS YP_005280226.1 378715333 11779216 4878955..4880496 1 NC_016902.1 KEGG: sdy:SDY_4014 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 subunit alpha 4880496 11779216 EKO11_4611 Escherichia coli KO11FL ATP synthase F1 subunit alpha YP_005280226.1 4878955 D 595495 CDS YP_005280227.1 378715334 11779217 4880547..4881410 1 NC_016902.1 KEGG: sdy:SDY_4015 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma 4881410 11779217 EKO11_4612 Escherichia coli KO11FL ATP synthase F1 subunit gamma YP_005280227.1 4880547 D 595495 CDS YP_005280228.1 378715335 11779218 4881437..4882819 1 NC_016902.1 TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: sbc:SbBS512_E4189 F0F1 ATP synthase subunit beta; SMART: AAA ATPase; ATP synthase F1 subunit beta 4882819 11779218 EKO11_4613 Escherichia coli KO11FL ATP synthase F1 subunit beta YP_005280228.1 4881437 D 595495 CDS YP_005280229.1 378715336 11779219 4882840..4883259 1 NC_016902.1 KEGG: sdy:SDY_4017 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; ATP synthase F1 subunit epsilon 4883259 11779219 EKO11_4614 Escherichia coli KO11FL ATP synthase F1 subunit epsilon YP_005280229.1 4882840 D 595495 CDS YP_005280230.1 378715337 11779220 4883610..4884980 1 NC_016902.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: ebd:ECBD_4302 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; UDP-N-acetylglucosamine pyrophosphorylase 4884980 11779220 EKO11_4615 Escherichia coli KO11FL UDP-N-acetylglucosamine pyrophosphorylase YP_005280230.1 4883610 D 595495 CDS YP_005280231.1 378715338 11779221 4885142..4886971 1 NC_016902.1 KEGG: ebd:ECBD_4303 glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); glucosamine/fructose-6-phosphate aminotransferase 4886971 11779221 EKO11_4616 Escherichia coli KO11FL glucosamine/fructose-6-phosphate aminotransferase YP_005280231.1 4885142 D 595495 CDS YP_005280232.1 378715339 11779222 4887273..4887845 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sbc:SbBS512_E4193 long polar fimbrial operon protein LpfA; fimbrial protein domain-containing protein 4887845 11779222 EKO11_4617 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005280232.1 4887273 D 595495 CDS YP_005280233.1 378715340 11779223 4887893..4888624 1 NC_016902.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: eoi:ECO111_4560 putative fimbrial chaperone protein precursor; Pili assembly chaperone, N-terminal protein 4888624 11779223 EKO11_4618 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005280233.1 4887893 D 595495 CDS YP_005280234.1 378715341 11779224 4888649..4891171 1 NC_016902.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eoi:ECO111_4559 putative outer membrane usher protein precursor; fimbrial biogenesis outer membrane usher protein 4891171 11779224 EKO11_4619 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005280234.1 4888649 D 595495 CDS YP_005280235.1 378715342 11779225 4891182..4892255 1 NC_016902.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sbc:SbBS512_E4199 long polar fimbrial operon protein LpfD; fimbrial protein domain-containing protein 4892255 11779225 EKO11_4620 Escherichia coli KO11FL fimbrial protein domain-containing protein YP_005280235.1 4891182 D 595495 CDS YP_005280236.1 378715343 11779226 4892503..4893543 1 NC_016902.1 KEGG: sbc:SbBS512_E4200 phosphate ABC transporter periplasmic substrate-binding protein PstS; TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; phosphate ABC transporter substrate-binding protein 4893543 11779226 EKO11_4621 Escherichia coli KO11FL phosphate ABC transporter substrate-binding protein YP_005280236.1 4892503 D 595495 CDS YP_005280237.1 378715344 11779227 4893630..4894589 1 NC_016902.1 KEGG: sbc:SbBS512_E4201 phosphate transporter permease subunit PstC; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 4894589 11779227 EKO11_4622 Escherichia coli KO11FL phosphate ABC transporter permease YP_005280237.1 4893630 D 595495 CDS YP_005280238.1 378715345 11779228 4894589..4895479 1 NC_016902.1 KEGG: sfx:S4043 phosphate transporter permease subunit PtsA; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 4895479 11779228 EKO11_4623 Escherichia coli KO11FL phosphate ABC transporter permease YP_005280238.1 4894589 D 595495 CDS YP_005280239.1 378715346 11779229 4895570..4896343 1 NC_016902.1 TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: sdy:SDY_4025 phosphate transporter subunit; SMART: AAA ATPase; phosphate ABC transporter ATPase 4896343 11779229 EKO11_4624 Escherichia coli KO11FL phosphate ABC transporter ATPase YP_005280239.1 4895570 D 595495 CDS YP_005280240.1 378715347 11779230 4896358..4897083 1 NC_016902.1 KEGG: sbc:SbBS512_E4204 transcriptional regulator PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU 4897083 11779230 EKO11_4625 Escherichia coli KO11FL phosphate uptake regulator PhoU YP_005280240.1 4896358 D 595495 CDS YP_005280241.1 378715348 11779231 4897369..4898205 1 NC_016902.1 PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: eoi:ECO111_4551 transcriptional antiterminator BglG; transcriptional antiterminator BglG 4898205 11779231 EKO11_4626 Escherichia coli KO11FL transcriptional antiterminator BglG YP_005280241.1 4897369 D 595495 CDS YP_005280242.1 378715349 11779823 4898264..4900216 1 NC_016902.1 manually curated; TIGRFAM: PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose-like IIB subunint; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose subfamily, IIA subunit; KEGG: efe:EFER_4020 PTS system beta-glucoside-specific transporter subunits IIABC; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; PTS system beta-glucoside-specific transporter subunit IIABC 4900216 11779823 EKO11_4627 Escherichia coli KO11FL PTS system beta-glucoside-specific transporter subunit IIABC YP_005280242.1 4898264 D 595495 CDS YP_005280243.1 378715350 11779232 4900235..4901629 1 NC_016902.1 PFAM: glycoside hydrolase family 1; KEGG: eoi:ECO111_4548 cryptic phospho-beta-glucosidase B; glycoside hydrolase 4901629 11779232 EKO11_4628 Escherichia coli KO11FL glycoside hydrolase YP_005280243.1 4900235 D 595495 CDS YP_005280244.1 378715351 11779233 4901715..4903331 1 NC_016902.1 PFAM: porin LamB type; KEGG: eoi:ECO111_4547 carbohydrate-specific outer membrane porin, cryptic; LamB type porin 4903331 11779233 EKO11_4629 Escherichia coli KO11FL LamB type porin YP_005280244.1 4901715 D 595495 CDS YP_005280245.1 378715352 11779234 4903358..4904527 1 NC_016902.1 PFAM: glycoside hydrolase family 13 domain protein; esterase; KEGG: eoh:ECO103_4439 putative xylanase; glycoside hydrolase family protein 4904527 11779234 EKO11_4630 Escherichia coli KO11FL glycoside hydrolase family protein YP_005280245.1 4903358 D 595495 CDS YP_005280246.1 378715353 11779235 4904542..4905264 1 NC_016902.1 PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: ebd:ECBD_4314 putative 6-phosphogluconolactonase; glucosamine/galactosamine-6-phosphate isomerase 4905264 11779235 EKO11_4631 Escherichia coli KO11FL glucosamine/galactosamine-6-phosphate isomerase YP_005280246.1 4904542 D 595495 CDS YP_005280247.1 378715354 11779236 complement(4905326..4905913) 1 NC_016902.1 PFAM: protein of unknown function UPF0167; KEGG: ebd:ECBD_4315 protein of unknown function UPF0167; hypothetical protein 4905913 11779236 EKO11_4632 Escherichia coli KO11FL hypothetical protein YP_005280247.1 4905326 R 595495 CDS YP_005280248.1 378715355 11779237 complement(4905962..4906435) 1 NC_016902.1 KEGG: eoh:ECO103_4442 putative inner membrane protein; putative inner membrane protein 4906435 11779237 EKO11_4633 Escherichia coli KO11FL putative inner membrane protein YP_005280248.1 4905962 R 595495 CDS YP_005280249.1 378715356 11779238 complement(4906502..4907167) 1 NC_016902.1 KEGG: ebd:ECBD_4317 6-phosphogluconate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 4907167 11779238 EKO11_4634 Escherichia coli KO11FL HAD-superfamily hydrolase YP_005280249.1 4906502 R 595495 CDS YP_005280250.1 378715357 11779239 4907334..4908671 1 NC_016902.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: ebd:ECBD_4318 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 4908671 11779239 EKO11_4635 Escherichia coli KO11FL xanthine/uracil/vitamin C permease YP_005280250.1 4907334 D 595495 CDS YP_005280251.1 378715358 11779240 complement(4908725..4909291) 1 NC_016902.1 PFAM: NADPH-dependent FMN reductase; KEGG: sfv:SFV_3798 hypothetical protein; NADPH-dependent FMN reductase 4909291 11779240 EKO11_4636 Escherichia coli KO11FL NADPH-dependent FMN reductase YP_005280251.1 4908725 R 595495 CDS YP_005280252.1 378715359 11779241 complement(4909313..4910062) 1 NC_016902.1 KEGG: eoh:ECO103_4446 putative phosphopantetheinyl transferase; putative phosphopantetheinyl transferase 4910062 11779241 EKO11_4637 Escherichia coli KO11FL putative phosphopantetheinyl transferase YP_005280252.1 4909313 R 595495 CDS YP_005280253.1 378715360 11779242 complement(4910219..4911178) 1 NC_016902.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E4211 DNA-binding transcriptional regulator YidZ; LysR family transcriptional regulator 4911178 11779242 EKO11_4638 Escherichia coli KO11FL LysR family transcriptional regulator YP_005280253.1 4910219 R 595495 CDS YP_005280254.1 378715361 11779824 complement(4911153..4912328) 1 NC_016902.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoh:ECO103_4448 multidrug efflux system protein MdtL; major facilitator superfamily protein 4912328 11779824 EKO11_4639 Escherichia coli KO11FL major facilitator superfamily protein YP_005280254.1 4911153 R 595495 CDS YP_005280255.1 378715362 11779243 complement(4912460..4913707) 1 NC_016902.1 KEGG: sbo:SBO_3666 tryptophan permease TnaB; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease; aromatic amino acid transporter 4913707 11779243 EKO11_4640 Escherichia coli KO11FL aromatic amino acid transporter YP_005280255.1 4912460 R 595495 CDS YP_005280256.1 378715363 11779825 complement(4913798..4915213) 1 NC_016902.1 TIGRFAM: tryptophanase; KEGG: sfv:SFV_3805 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; tryptophanase 4915213 11779825 EKO11_4641 Escherichia coli KO11FL tryptophanase YP_005280256.1 4913798 R 595495 CDS YP_005280257.1 378715364 11779826 complement(4915434..4915532) 1 NC_016902.1 manually curated; TIGRFAM: tryptophanase leader peptide; KEGG: efe:EFER_4509 tryptophanase leader peptide; PFAM: tryptophanese operon leader peptide; tryptophanase leader peptide 4915532 11779826 EKO11_4642 Escherichia coli KO11FL tryptophanase leader peptide YP_005280257.1 4915434 R 595495 CDS YP_005280258.1 378715365 11779244 complement(4915751..4917115) 1 NC_016902.1 KEGG: ebd:ECBD_4326 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; tRNA modification GTPase TrmE 4917115 11779244 EKO11_4643 Escherichia coli KO11FL tRNA modification GTPase TrmE YP_005280258.1 4915751 R 595495 CDS YP_005280259.1 378715366 11779245 complement(4917221..4918867) 1 NC_016902.1 KEGG: ssn:SSON_3656 putative inner membrane protein translocase component YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family domain containing; membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein; YidC/Oxa1 family membrane protein insertase 4918867 11779245 EKO11_4644 Escherichia coli KO11FL YidC/Oxa1 family membrane protein insertase YP_005280259.1 4917221 R 595495 CDS YP_005280260.1 378715367 11779246 complement(4918870..4919127) 1 NC_016902.1 KEGG: sdy:SDY_4187 hypothetical protein; manually curated; PFAM: protein of unknown function DUF37; hypothetical protein 4919127 11779246 EKO11_4645 Escherichia coli KO11FL hypothetical protein YP_005280260.1 4918870 R 595495 CDS YP_005280261.1 378715368 11779247 complement(4919091..4919450) 1 NC_016902.1 manually curated; TIGRFAM: ribonuclease P protein component; KEGG: sdy:SDY_4186 ribonuclease P; PFAM: ribonuclease P protein; ribonuclease P protein component 4919450 11779247 EKO11_4646 Escherichia coli KO11FL ribonuclease P protein component YP_005280261.1 4919091 R 595495 CDS YP_005280262.1 378715369 11779248 complement(4919467..4919607) 1 NC_016902.1 KEGG: pam:PANA_0091 RpmH; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; 50S ribosomal protein L34 4919607 11779248 EKO11_4647 Escherichia coli KO11FL 50S ribosomal protein L34 YP_005280262.1 4919467 R 595495 CDS YP_005280263.1 378715371 11743927 41..364 1 NC_016903.1 PFAM: mobilisation protein; KEGG: eoj:ECO26_p3-3 putative mobilization protein 2; mobilization protein 364 11743927 EKO11_4770 Escherichia coli KO11FL mobilization protein YP_005280263.1 41 D 595495 CDS YP_005280264.1 378715372 11743921 354..1907 1 NC_016903.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: eoj:ECO26_p3-4 mobilization protein MbeA; Relaxase/mobilization nuclease family protein 1907 11743921 EKO11_4771 Escherichia coli KO11FL Relaxase/mobilization nuclease family protein YP_005280264.1 354 D 595495 CDS YP_005280265.1 378715373 11743926 complement(2165..3145) 1 NC_016903.1 KEGG: pcr:Pcryo_2488 hypothetical protein; hypothetical protein 3145 11743926 EKO11_4773 Escherichia coli KO11FL hypothetical protein YP_005280265.1 2165 R 595495 CDS YP_005280266.1 378715374 11743923 complement(3147..4154) 1 NC_016903.1 KEGG: pcr:Pcryo_2487 hypothetical protein; hypothetical protein 4154 11743923 EKO11_4774 Escherichia coli KO11FL hypothetical protein YP_005280266.1 3147 R 595495 CDS YP_005280267.1 378715375 11743924 complement(4482..4922) 1 NC_016903.1 KEGG: nve:NEMVE_v1g137021 hypothetical protein; hypothetical protein 4922 11743924 EKO11_4775 Escherichia coli KO11FL hypothetical protein YP_005280267.1 4482 R 595495 CDS YP_005280268.1 378715376 11743925 complement(5144..5335) 1 NC_016903.1 PFAM: regulatory protein Rop; KEGG: rcu:RCOM_2091210 Regulatory protein rop, putative; regulatory protein Rop 5335 11743925 EKO11_4776 Escherichia coli KO11FL regulatory protein Rop YP_005280268.1 5144 R 595495 CDS YP_005280269.1 378715378 11779941 104..433 1 NC_016904.1 KEGG: eoh:ECO103_3781 hypothetical protein; hypothetical protein 433 11779941 EKO11_4648 Escherichia coli KO11FL hypothetical protein YP_005280269.1 104 D 595495 CDS YP_005280270.1 378715379 11779942 420..800 1 NC_016904.1 PFAM: IS66 Orf2 family protein; KEGG: eoj:ECO26_1299 hypothetical protein; IS66 Orf2 family protein 800 11779942 EKO11_4649 Escherichia coli KO11FL IS66 Orf2 family protein YP_005280270.1 420 D 595495 CDS YP_005280271.1 378715380 11779943 843..2426 1 NC_016904.1 KEGG: eoh:ECO103_3783 hypothetical protein; hypothetical protein 2426 11779943 EKO11_4650 Escherichia coli KO11FL hypothetical protein YP_005280271.1 843 D 595495 CDS YP_005280272.1 378715381 11779944 2955..3956 1 NC_016904.1 KEGG: seh:SeHA_A0025 hypothetical protein; hypothetical protein 3956 11779944 EKO11_4651 Escherichia coli KO11FL hypothetical protein YP_005280272.1 2955 D 595495 CDS YP_005280273.1 378715382 11779945 complement(4130..4474) 1 NC_016904.1 KEGG: pap:PSPA7_5067 putative tail tape measure protein; hypothetical protein 4474 11779945 EKO11_4652 Escherichia coli KO11FL hypothetical protein YP_005280273.1 4130 R 595495 CDS YP_005280274.1 378715383 11779946 complement(4972..5226) 1 NC_016904.1 KEGG: seh:SeHA_A0026 hypothetical protein; hypothetical protein 5226 11779946 EKO11_4653 Escherichia coli KO11FL hypothetical protein YP_005280274.1 4972 R 595495 CDS YP_005280275.1 378715384 11779947 complement(5276..6202) 1 NC_016904.1 KEGG: seh:SeHA_A0027 hypothetical protein; hypothetical protein 6202 11779947 EKO11_4654 Escherichia coli KO11FL hypothetical protein YP_005280275.1 5276 R 595495 CDS YP_005280276.1 378715385 11779948 6735..7085 1 NC_016904.1 KEGG: efe:pEFER_0055 conserved hypothetical protein, putative helix-turn-helix, fis-type; hypothetical protein 7085 11779948 EKO11_4655 Escherichia coli KO11FL hypothetical protein YP_005280276.1 6735 D 595495 CDS YP_005280277.1 378715386 11779949 7144..7965 1 NC_016904.1 KEGG: kpu:pK2044_00670 hypothetical protein; hypothetical protein 7965 11779949 EKO11_4656 Escherichia coli KO11FL hypothetical protein YP_005280277.1 7144 D 595495 CDS YP_005280278.1 378715387 11779828 7965..8744 1 NC_016904.1 PFAM: integrase family protein; KEGG: seh:SeHA_A0031 resolvase; integrase family protein 8744 11779828 EKO11_4657 Escherichia coli KO11FL integrase family protein YP_005280278.1 7965 D 595495 CDS YP_005280279.1 378715388 11779829 8925..9569 1 NC_016904.1 KEGG: seh:SeHA_A0032 ParA protein homolog; ParA protein 9569 11779829 EKO11_4658 Escherichia coli KO11FL ParA protein YP_005280279.1 8925 D 595495 CDS YP_005280280.1 378715389 11779830 9656..9964 1 NC_016904.1 KEGG: seh:SeHA_A0033 putative 60 kDa chaperonin; putative 60 kDa chaperonin 9964 11779830 EKO11_4659 Escherichia coli KO11FL putative 60 kDa chaperonin YP_005280280.1 9656 D 595495 CDS YP_005280281.1 378715390 11779831 10378..11358 1 NC_016904.1 PFAM: StbA family protein; KEGG: seh:SeHA_A0034 plasmid segregation protein ParM; StbA family protein 11358 11779831 EKO11_4660 Escherichia coli KO11FL StbA family protein YP_005280281.1 10378 D 595495 CDS YP_005280282.1 378715391 11779832 11351..11767 1 NC_016904.1 PFAM: Plasmid stability protein, StbB; KEGG: seh:SeHA_A0035 plasmid stability protein; plasmid stability protein StbB 11767 11779832 EKO11_4661 Escherichia coli KO11FL plasmid stability protein StbB YP_005280282.1 11351 D 595495 CDS YP_005280283.1 378715392 11779833 complement(11769..13043) 1 NC_016904.1 KEGG: seh:SeHA_A0036 DNA polymerase V subunit UmuC; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 13043 11779833 EKO11_4662 Escherichia coli KO11FL DNA-directed DNA polymerase YP_005280283.1 11769 R 595495 CDS YP_005280284.1 378715393 11779834 complement(13043..13480) 1 NC_016904.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: seh:SeHA_A0037 protein ImpA; Peptidase S24/S26A/S26B 13480 11779834 EKO11_4663 Escherichia coli KO11FL Peptidase S24/S26A/S26B YP_005280284.1 13043 R 595495 CDS YP_005280285.1 378715394 11779835 complement(13477..13725) 1 NC_016904.1 PFAM: DinI family protein; KEGG: seh:SeHA_A0038 protein ImpC; DinI family protein 13725 11779835 EKO11_4664 Escherichia coli KO11FL DinI family protein YP_005280285.1 13477 R 595495 CDS YP_005280286.1 378715395 11779836 13836..14105 1 NC_016904.1 manually curated; KEGG: mpa:MAP1687 hypothetical protein; hypothetical protein 14105 11779836 EKO11_4665 Escherichia coli KO11FL hypothetical protein YP_005280286.1 13836 D 595495 CDS YP_005280287.1 378715396 11779837 14119..15045 1 NC_016904.1 PFAM: protein of unknown function DUF1281; KEGG: sfl:CP0196 hypothetical protein; hypothetical protein 15045 11779837 EKO11_4666 Escherichia coli KO11FL hypothetical protein YP_005280287.1 14119 D 595495 CDS YP_005280288.1 378715397 11779838 complement(15197..15322) 1 NC_016904.1 manually curated; KEGG: sec:SC131 hypothetical protein; hypothetical protein 15322 11779838 EKO11_4667 Escherichia coli KO11FL hypothetical protein YP_005280288.1 15197 R 595495 CDS YP_005280289.1 378715398 11779839 15429..16112 1 NC_016904.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sfl:CP0198 putative methylase; DNA methylase N-4/N-6 domain-containing protein 16112 11779839 EKO11_4668 Escherichia coli KO11FL DNA methylase N-4/N-6 domain-containing protein YP_005280289.1 15429 D 595495 CDS YP_005280290.1 378715399 11779840 16113..16334 1 NC_016904.1 KEGG: eok:G2583_pO550161 hypothetical protein; hypothetical protein 16334 11779840 EKO11_4669 Escherichia coli KO11FL hypothetical protein YP_005280290.1 16113 D 595495 CDS YP_005280291.1 378715400 11779841 16348..16782 1 NC_016904.1 KEGG: eoj:ECO26_p1-57 conserved predicted protein; hypothetical protein 16782 11779841 EKO11_4670 Escherichia coli KO11FL hypothetical protein YP_005280291.1 16348 D 595495 CDS YP_005280292.1 378715401 11779842 16828..17604 1 NC_016904.1 KEGG: etw:ECSP_6047 hypothetical protein; hypothetical protein 17604 11779842 EKO11_4671 Escherichia coli KO11FL hypothetical protein YP_005280292.1 16828 D 595495 CDS YP_005280293.1 378715402 11779844 18015..18440 1 NC_016904.1 PFAM: Antirestriction protein; KEGG: eoj:ECO26_p2-16 putative antirestriction protein; antirestriction protein 18440 11779844 EKO11_4673 Escherichia coli KO11FL antirestriction protein YP_005280293.1 18015 D 595495 CDS YP_005280294.1 378715403 11779845 18487..18909 1 NC_016904.1 KEGG: eok:G2583_pO550002 YcjA; YcjA 18909 11779845 EKO11_4674 Escherichia coli KO11FL YcjA YP_005280294.1 18487 D 595495 CDS YP_005280295.1 378715404 11779846 18906..19097 1 NC_016904.1 KEGG: sec:SC124 hypothetical protein; hypothetical protein 19097 11779846 EKO11_4675 Escherichia coli KO11FL hypothetical protein YP_005280295.1 18906 D 595495 CDS YP_005280296.1 378715405 11779847 19866..20393 1 NC_016904.1 KEGG: sec:SC120 single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 20393 11779847 EKO11_4676 Escherichia coli KO11FL single-strand binding protein YP_005280296.1 19866 D 595495 CDS YP_005280297.1 378715406 11779848 20450..20683 1 NC_016904.1 PFAM: protein of unknown function DUF905; KEGG: sec:SC119 YkfF; hypothetical protein 20683 11779848 EKO11_4677 Escherichia coli KO11FL hypothetical protein YP_005280297.1 20450 D 595495 CDS YP_005280298.1 378715407 11779849 20745..22703 1 NC_016904.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: seh:SeHA_A0053 ParB-like partition protein; SMART: ParB domain protein nuclease; parB-like partition protein 22703 11779849 EKO11_4678 Escherichia coli KO11FL parB-like partition protein YP_005280298.1 20745 D 595495 CDS YP_005280299.1 378715408 11779850 22758..23192 1 NC_016904.1 PFAM: plasmid SOS inhibition protein; KEGG: seh:SeHA_A0054 plasmid SOS inhibition protein B; plasmid SOS inhibition protein 23192 11779850 EKO11_4679 Escherichia coli KO11FL plasmid SOS inhibition protein YP_005280299.1 22758 D 595495 CDS YP_005280300.1 378715409 11779851 23189..23908 1 NC_016904.1 PFAM: PsiA family protein; KEGG: seh:SeHA_A0055 plasmid SOS inhibition protein A; PsiA family protein 23908 11779851 EKO11_4680 Escherichia coli KO11FL PsiA family protein YP_005280300.1 23189 D 595495 CDS YP_005280301.1 378715410 11779852 23905..24501 1 NC_016904.1 KEGG: seh:SeHA_A0056 hypothetical protein; hypothetical protein 24501 11779852 EKO11_4681 Escherichia coli KO11FL hypothetical protein YP_005280301.1 23905 D 595495 CDS YP_005280302.1 378715411 11779853 24573..25043 1 NC_016904.1 KEGG: sec:SC114 anti-restriction protein; manually curated; PFAM: protein of unknown function DUF1472; hypothetical protein 25043 11779853 EKO11_4682 Escherichia coli KO11FL hypothetical protein YP_005280302.1 24573 D 595495 CDS YP_005280303.1 378715412 11779854 24964..25464 1 NC_016904.1 PFAM: Antirestriction ArdA family protein; KEGG: sec:SC114 anti-restriction protein; Antirestriction ArdA family protein 25464 11779854 EKO11_4683 Escherichia coli KO11FL Antirestriction ArdA family protein YP_005280303.1 24964 D 595495 CDS YP_005280304.1 378715413 11779855 complement(26192..27043) 1 NC_016904.1 KEGG: ebd:ECBD_4284 integrase catalytic region; manually curated; PFAM: Integrase catalytic region; integrase catalytic subunit 27043 11779855 EKO11_4684 Escherichia coli KO11FL integrase catalytic subunit YP_005280304.1 26192 R 595495 CDS YP_005280305.1 378715414 11779856 complement(27040..27561) 1 NC_016904.1 KEGG: sfx:S1483 IS103 orf; transposase 27561 11779856 EKO11_4685 Escherichia coli KO11FL transposase YP_005280305.1 27040 R 595495 CDS YP_005280306.1 378715415 11779857 27639..28073 1 NC_016904.1 KEGG: sec:SC111 YdfA; hypothetical protein 28073 11779857 EKO11_4686 Escherichia coli KO11FL hypothetical protein YP_005280306.1 27639 D 595495 CDS YP_005280307.1 378715416 11779858 28167..28433 1 NC_016904.1 KEGG: seh:SeHA_A0064 hypothetical protein; hypothetical protein 28433 11779858 EKO11_4687 Escherichia coli KO11FL hypothetical protein YP_005280307.1 28167 D 595495 CDS YP_005280308.1 378715417 11779859 28498..29388 1 NC_016904.1 PFAM: transposase YhgA family protein; KEGG: sec:SC108 putative YhgA-like transposase; transposase YhgA family protein 29388 11779859 EKO11_4688 Escherichia coli KO11FL transposase YhgA family protein YP_005280308.1 28498 D 595495 CDS YP_005280309.1 378715418 11779860 29388..29609 1 NC_016904.1 KEGG: eoj:ECO26_p1-67 hypothetical protein; hypothetical protein 29609 11779860 EKO11_4689 Escherichia coli KO11FL hypothetical protein YP_005280309.1 29388 D 595495 CDS YP_005280310.1 378715419 11779861 complement(29640..29891) 1 NC_016904.1 KEGG: seh:SeHA_A0067 hypothetical protein; hypothetical protein 29891 11779861 EKO11_4690 Escherichia coli KO11FL hypothetical protein YP_005280310.1 29640 R 595495 CDS YP_005280311.1 378715420 11779862 30473..31321 1 NC_016904.1 KEGG: sec:SC102 YdiA; protein YdiA 31321 11779862 EKO11_4691 Escherichia coli KO11FL protein YdiA YP_005280311.1 30473 D 595495 CDS YP_005280312.1 378715421 11779863 complement(31407..31742) 1 NC_016904.1 KEGG: eoj:ECO26_p1-71 probable mobilization protein MobC; putative mobilization protein MobC 31742 11779863 EKO11_4692 Escherichia coli KO11FL putative mobilization protein MobC YP_005280312.1 31407 R 595495 CDS YP_005280313.1 378715422 11779864 31928..32308 1 NC_016904.1 manually curated; KEGG: seh:SeHA_A0073 relaxosome component; relaxosome component 32308 11779864 EKO11_4693 Escherichia coli KO11FL relaxosome component YP_005280313.1 31928 D 595495 CDS YP_005280314.1 378715423 11779865 32319..35018 1 NC_016904.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: seh:SeHA_A0074 putative relaxase/mobilization nuclease domain protein; Relaxase/mobilization nuclease family protein 35018 11779865 EKO11_4694 Escherichia coli KO11FL Relaxase/mobilization nuclease family protein YP_005280314.1 32319 D 595495 CDS YP_005280315.1 378715424 11779866 complement(35055..37346) 1 NC_016904.1 KEGG: seh:SeHA_A0075 TrbC; conjugal transfer protein, TrbC 37346 11779866 EKO11_4695 Escherichia coli KO11FL conjugal transfer protein, TrbC YP_005280315.1 35055 R 595495 CDS YP_005280316.1 378715425 11779867 complement(37339..38409) 1 NC_016904.1 KEGG: seh:SeHA_A0076 TrbB; conjugal transfer protein, TrbB 38409 11779867 EKO11_4696 Escherichia coli KO11FL conjugal transfer protein, TrbB YP_005280316.1 37339 R 595495 CDS YP_005280317.1 378715426 11779868 complement(38428..39636) 1 NC_016904.1 KEGG: seh:SeHA_A0077 conjugal transfer protein; conjugal transfer protein 39636 11779868 EKO11_4697 Escherichia coli KO11FL conjugal transfer protein YP_005280317.1 38428 R 595495 CDS YP_005280318.1 378715427 11779869 complement(39898..40806) 1 NC_016904.1 KEGG: pfh:PFHG_03201 conserved hypothetical protein; hypothetical protein 40806 11779869 EKO11_4698 Escherichia coli KO11FL hypothetical protein YP_005280318.1 39898 R 595495 CDS YP_005280319.1 378715428 11779870 41438..41533 1 NC_016904.1 KEGG: sec:SC083 hypothetical protein; hypothetical protein 41533 11779870 EKO11_4699 Escherichia coli KO11FL hypothetical protein YP_005280319.1 41438 D 595495 CDS YP_005280320.1 378715429 11779871 complement(41598..41774) 1 NC_016904.1 KEGG: seh:SeHA_A0080 hypothetical protein; hypothetical protein 41774 11779871 EKO11_4700 Escherichia coli KO11FL hypothetical protein YP_005280320.1 41598 R 595495 CDS YP_005280321.1 378715430 11779872 complement(41984..42175) 1 NC_016904.1 KEGG: sgl:SG0681 hemolysin expression-modulating protein; manually curated; PFAM: Haemolysin expression modulating family protein; hemolysin expression modulating family protein 42175 11779872 EKO11_4701 Escherichia coli KO11FL hemolysin expression modulating family protein YP_005280321.1 41984 R 595495 CDS YP_005280322.1 378715431 11779873 complement(42241..42855) 1 NC_016904.1 KEGG: seh:SeHA_A0083 surface exclusion protein; hypothetical protein 42855 11779873 EKO11_4702 Escherichia coli KO11FL hypothetical protein YP_005280322.1 42241 R 595495 CDS YP_005280323.1 378715432 11779874 complement(42931..45168) 1 NC_016904.1 manually curated; KEGG: sec:SC079 integral membrane protein; conjugal transfer integral membrane protein TraY 45168 11779874 EKO11_4703 Escherichia coli KO11FL conjugal transfer integral membrane protein TraY YP_005280323.1 42931 R 595495 CDS YP_005280324.1 378715433 11779875 complement(45196..45780) 1 NC_016904.1 KEGG: seh:SeHA_A0085 TraX; conjugal transfer protein TraX 45780 11779875 EKO11_4704 Escherichia coli KO11FL conjugal transfer protein TraX YP_005280324.1 45196 R 595495 CDS YP_005280325.1 378715434 11779876 complement(45809..47011) 1 NC_016904.1 KEGG: sec:SC077 lipoprotein; conjugal transfer protein TraW 47011 11779876 EKO11_4705 Escherichia coli KO11FL conjugal transfer protein TraW YP_005280325.1 45809 R 595495 CDS YP_005280326.1 378715435 11779877 complement(46978..47592) 1 NC_016904.1 KEGG: seh:SeHA_A0087 TraV; conjugal transfer protein TraV 47592 11779877 EKO11_4706 Escherichia coli KO11FL conjugal transfer protein TraV YP_005280326.1 46978 R 595495 CDS YP_005280327.1 378715436 11779878 complement(47592..50636) 1 NC_016904.1 KEGG: seh:SeHA_A0088 TraU; protein TraU 50636 11779878 EKO11_4707 Escherichia coli KO11FL protein TraU YP_005280327.1 47592 R 595495 CDS YP_005280328.1 378715437 11779879 complement(50726..51526) 1 NC_016904.1 KEGG: seh:SeHA_A0089 hypothetical protein; hypothetical protein 51526 11779879 EKO11_4708 Escherichia coli KO11FL hypothetical protein YP_005280328.1 50726 R 595495 CDS YP_005280329.1 378715438 11779880 complement(51510..51698) 1 NC_016904.1 KEGG: seh:SeHA_A0090 hypothetical protein; hypothetical protein 51698 11779880 EKO11_4709 Escherichia coli KO11FL hypothetical protein YP_005280329.1 51510 R 595495 CDS YP_005280330.1 378715439 11779881 complement(51762..52166) 1 NC_016904.1 KEGG: seh:SeHA_A0091 TraR; TraR 52166 11779881 EKO11_4710 Escherichia coli KO11FL TraR YP_005280330.1 51762 R 595495 CDS YP_005280331.1 378715440 11779882 complement(52217..52744) 1 NC_016904.1 KEGG: seh:SeHA_A0092 TraQ; TraQ 52744 11779882 EKO11_4711 Escherichia coli KO11FL TraQ YP_005280331.1 52217 R 595495 CDS YP_005280332.1 378715441 11779883 complement(52744..53448) 1 NC_016904.1 KEGG: seh:SeHA_A0093 TraP; TraP 53448 11779883 EKO11_4712 Escherichia coli KO11FL TraP YP_005280332.1 52744 R 595495 CDS YP_005280333.1 378715442 11779884 complement(53448..54737) 1 NC_016904.1 KEGG: sec:SC069 TraO-like protein; TraO-like protein 54737 11779884 EKO11_4713 Escherichia coli KO11FL TraO-like protein YP_005280333.1 53448 R 595495 CDS YP_005280334.1 378715443 11779885 complement(54740..55723) 1 NC_016904.1 KEGG: seh:SeHA_A0095 TraN; protein TraN 55723 11779885 EKO11_4714 Escherichia coli KO11FL protein TraN YP_005280334.1 54740 R 595495 CDS YP_005280335.1 378715444 11779886 complement(55734..56426) 1 NC_016904.1 KEGG: sec:SC071 TraM-like protein; TraM-like protein 56426 11779886 EKO11_4715 Escherichia coli KO11FL TraM-like protein YP_005280335.1 55734 R 595495 CDS YP_005280336.1 378715445 11779887 complement(56423..56770) 1 NC_016904.1 KEGG: seh:SeHA_A0097 TraL; protein TraL 56770 11779887 EKO11_4716 Escherichia coli KO11FL protein TraL YP_005280336.1 56423 R 595495 CDS YP_005280337.1 378715446 11779888 complement(56788..60555) 1 NC_016904.1 KEGG: seh:SeHA_A0098 DNA primase; PFAM: TOPRIM domain-containing protein; SMART: Toprim sub domain-containing protein; TOPRIM domain-containing protein 60555 11779888 EKO11_4717 Escherichia coli KO11FL TOPRIM domain-containing protein YP_005280337.1 56788 R 595495 CDS YP_005280338.1 378715447 11779889 complement(60645..61196) 1 NC_016904.1 KEGG: seh:SeHA_A0099 phospholipase D (PLD) family protein; phospholipase D 61196 11779889 EKO11_4718 Escherichia coli KO11FL phospholipase D YP_005280338.1 60645 R 595495 CDS YP_005280339.1 378715448 11779890 complement(61211..61501) 1 NC_016904.1 KEGG: seh:SeHA_A0100 TraK; protein TraK 61501 11779890 EKO11_4719 Escherichia coli KO11FL protein TraK YP_005280339.1 61211 R 595495 CDS YP_005280340.1 378715449 11779893 complement(63904..64722) 1 NC_016904.1 KEGG: seh:SeHA_A0102 lipoprotein; lipoprotein 64722 11779893 EKO11_4722 Escherichia coli KO11FL lipoprotein YP_005280340.1 63904 R 595495 CDS YP_005280341.1 378715450 11779894 complement(64719..65177) 1 NC_016904.1 KEGG: seh:SeHA_A0103 lipoprotein; lipoprotein 65177 11779894 EKO11_4723 Escherichia coli KO11FL lipoprotein YP_005280341.1 64719 R 595495 CDS YP_005280342.1 378715451 11779895 complement(65572..66156) 1 NC_016904.1 PFAM: Phosphoglycerate mutase; KEGG: seh:SeHA_A0105 TraG; phosphoglycerate mutase 66156 11779895 EKO11_4724 Escherichia coli KO11FL phosphoglycerate mutase YP_005280342.1 65572 R 595495 CDS YP_005280343.1 378715452 11779896 complement(66216..67415) 1 NC_016904.1 KEGG: seh:SeHA_A0106 TraF; protein TraF 67415 11779896 EKO11_4725 Escherichia coli KO11FL protein TraF YP_005280343.1 66216 R 595495 CDS YP_005280344.1 378715453 11779897 complement(67504..68328) 1 NC_016904.1 KEGG: seh:SeHA_A0107 TraE; protein TraE 68328 11779897 EKO11_4726 Escherichia coli KO11FL protein TraE YP_005280344.1 67504 R 595495 CDS YP_005280345.1 378715454 11779899 complement(68718..70010) 1 NC_016904.1 KEGG: seh:SeHA_A0109 shufflon protein B'; shufflon protein B' 70010 11779899 EKO11_4728 Escherichia coli KO11FL shufflon protein B' YP_005280345.1 68718 R 595495 CDS YP_005280346.1 378715455 11779900 complement(70010..70666) 1 NC_016904.1 PFAM: peptidase A24A prepilin type IV; KEGG: seh:SeHA_A0110 prepilin peptidase; peptidase A24A prepilin type IV 70666 11779900 EKO11_4729 Escherichia coli KO11FL peptidase A24A prepilin type IV YP_005280346.1 70010 R 595495 CDS YP_005280347.1 378715456 11779901 complement(70651..71211) 1 NC_016904.1 PFAM: Lytic transglycosylase catalytic; KEGG: seh:SeHA_A0111 lytic transglycosylase PilT; lytic transglycosylase 71211 11779901 EKO11_4730 Escherichia coli KO11FL lytic transglycosylase YP_005280347.1 70651 R 595495 CDS YP_005280348.1 378715457 11779902 complement(71221..71835) 1 NC_016904.1 PFAM: PilS domain-containing protein; KEGG: seh:SeHA_A0112 typeIV prepilin; PilS domain-containing protein 71835 11779902 EKO11_4731 Escherichia coli KO11FL PilS domain-containing protein YP_005280348.1 71221 R 595495 CDS YP_005280349.1 378715458 11779903 complement(71852..72937) 1 NC_016904.1 PFAM: Type II secretion system F domain; KEGG: seh:SeHA_A0113 integral membrane protein; type II secretion system F domain-containing protein 72937 11779903 EKO11_4732 Escherichia coli KO11FL type II secretion system F domain-containing protein YP_005280349.1 71852 R 595495 CDS YP_005280350.1 378715459 11779904 complement(72950..74503) 1 NC_016904.1 PFAM: type II secretion system protein E; KEGG: seh:SeHA_A0114 ATP-binding protein; type II secretion system protein E 74503 11779904 EKO11_4733 Escherichia coli KO11FL type II secretion system protein E YP_005280350.1 72950 R 595495 CDS YP_005280351.1 378715460 11779905 complement(74514..74966) 1 NC_016904.1 TIGRFAM: type IV pilus biogenesis protein PilP; KEGG: seh:SeHA_A0115 type IV pilus biogenesis protein PilP; type IV pilus biogenesis protein PilP 74966 11779905 EKO11_4734 Escherichia coli KO11FL type IV pilus biogenesis protein PilP YP_005280351.1 74514 R 595495 CDS YP_005280352.1 378715461 11779906 complement(74953..76248) 1 NC_016904.1 KEGG: seh:SeHA_A0116 PilO protein; PilO protein 76248 11779906 EKO11_4735 Escherichia coli KO11FL PilO protein YP_005280352.1 74953 R 595495 CDS YP_005280353.1 378715462 11779907 complement(76241..77923) 1 NC_016904.1 KEGG: seh:SeHA_A0117 type IVB pilus formation outer membrane protein, R64 PilN family; TIGRFAM: type IVB pilus formation outer membrane protein, R64 PilN family; PFAM: Secretin domain protein; type II and III secretion system protein; type IVB pilus formation outer membrane protein, R64 PilN family 77923 11779907 EKO11_4736 Escherichia coli KO11FL type IVB pilus formation outer membrane protein, R64 PilN family YP_005280353.1 76241 R 595495 CDS YP_005280354.1 378715463 11779908 complement(77937..78374) 1 NC_016904.1 KEGG: seh:SeHA_A0118 PilM protein; PilM protein 78374 11779908 EKO11_4737 Escherichia coli KO11FL PilM protein YP_005280354.1 77937 R 595495 CDS YP_005280355.1 378715464 11779909 complement(78374..79441) 1 NC_016904.1 KEGG: seh:SeHA_A0119 PilL protein; PilL protein 79441 11779909 EKO11_4738 Escherichia coli KO11FL PilL protein YP_005280355.1 78374 R 595495 CDS YP_005280356.1 378715465 11779910 complement(79770..80363) 1 NC_016904.1 KEGG: seh:SeHA_A0120 PilK protein; hypothetical protein 80363 11779910 EKO11_4739 Escherichia coli KO11FL hypothetical protein YP_005280356.1 79770 R 595495 CDS YP_005280357.1 378715466 11779911 complement(80455..80709) 1 NC_016904.1 PFAM: Plasmid conjugative transfer protein PilI; KEGG: seh:SeHA_A0125 hypothetical protein; Plasmid conjugative transfer protein PilI 80709 11779911 EKO11_4740 Escherichia coli KO11FL Plasmid conjugative transfer protein PilI YP_005280357.1 80455 R 595495 CDS YP_005280358.1 378715467 11779912 complement(80873..81556) 1 NC_016904.1 KEGG: seh:SeHA_A0127 hypothetical protein; hypothetical protein 81556 11779912 EKO11_4741 Escherichia coli KO11FL hypothetical protein YP_005280358.1 80873 R 595495 CDS YP_005280359.1 378715468 11779913 complement(81810..82343) 1 NC_016904.1 KEGG: eoj:ECO26_p1-23 transfer protein B; PFAM: NGN domain-containing protein; SMART: NGN domain-containing protein; NGN domain-containing protein 82343 11779913 EKO11_4742 Escherichia coli KO11FL NGN domain-containing protein YP_005280359.1 81810 R 595495 CDS YP_005280360.1 378715469 11779914 complement(82785..83072) 1 NC_016904.1 KEGG: seh:SeHA_A0131 TraA; PFAM: Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; sigma-70 region 4 type 2 83072 11779914 EKO11_4743 Escherichia coli KO11FL sigma-70 region 4 type 2 YP_005280360.1 82785 R 595495 CDS YP_005280361.1 378715470 11779916 83955..85256 1 NC_016904.1 KEGG: seh:SeHA_A0002 replication initiation protein; replication initiation protein 85256 11779916 EKO11_4745 Escherichia coli KO11FL replication initiation protein YP_005280361.1 83955 D 595495 CDS YP_005280362.1 378715471 11779918 86166..86444 1 NC_016904.1 KEGG: sdy:SDY_P087 hypothetical protein; hypothetical protein 86444 11779918 EKO11_4747 Escherichia coli KO11FL hypothetical protein YP_005280362.1 86166 D 595495 CDS YP_005280363.1 378715472 11779919 86444..86719 1 NC_016904.1 PFAM: plasmid stabilization system; KEGG: etw:ECSP_6086 hypothetical protein; plasmid stabilization system 86719 11779919 EKO11_4748 Escherichia coli KO11FL plasmid stabilization system YP_005280363.1 86444 D 595495 CDS YP_005280364.1 378715473 11779920 86825..87112 1 NC_016904.1 KEGG: xca:xccb100_1412 putative transporter-like membrane protein; hypothetical protein 87112 11779920 EKO11_4749 Escherichia coli KO11FL hypothetical protein YP_005280364.1 86825 D 595495 CDS YP_005280365.1 378715474 11779921 complement(87303..87569) 1 NC_016904.1 KEGG: seh:SeHA_A0011 hypothetical protein; hypothetical protein 87569 11779921 EKO11_4750 Escherichia coli KO11FL hypothetical protein YP_005280365.1 87303 R 595495 CDS YP_005280366.1 378715475 11779922 complement(87569..88063) 1 NC_016904.1 KEGG: seh:SeHA_A0012 hypothetical protein; hypothetical protein 88063 11779922 EKO11_4751 Escherichia coli KO11FL hypothetical protein YP_005280366.1 87569 R 595495 CDS YP_005280367.1 378715476 11779923 complement(88119..88721) 1 NC_016904.1 PFAM: Fertility inhibition FinO-like; KEGG: seh:SeHA_A0013 YafB; Fertility inhibition FinO-like protein 88721 11779923 EKO11_4752 Escherichia coli KO11FL Fertility inhibition FinO-like protein YP_005280367.1 88119 R 595495 CDS YP_005280368.1 378715477 11779924 89075..90421 1 NC_016904.1 KEGG: seh:SeHA_A0015 YagA; YagA 90421 11779924 EKO11_4753 Escherichia coli KO11FL YagA YP_005280368.1 89075 D 595495 CDS YP_005280369.1 378715478 11779926 complement(91574..92761) 1 NC_016904.1 PFAM: transposase; KEGG: sfx:S1497 IS91 orf; transposase 92761 11779926 EKO11_4755 Escherichia coli KO11FL transposase YP_005280369.1 91574 R 595495 CDS YP_005280370.1 378715479 11779927 complement(92761..93126) 1 NC_016904.1 KEGG: eoj:ECO26_p1-83 hypothetical protein; hypothetical protein 93126 11779927 EKO11_4756 Escherichia coli KO11FL hypothetical protein YP_005280370.1 92761 R 595495 CDS YP_005280371.1 378715480 11779929 93824..94135 1 NC_016904.1 PFAM: P pili regulatory PapB protein; KEGG: sec:SCV23 major pilu subunit operon regulatory protein PapB; P pili regulatory PapB protein 94135 11779929 EKO11_4758 Escherichia coli KO11FL P pili regulatory PapB protein YP_005280371.1 93824 D 595495 CDS YP_005280372.1 378715481 11779930 94177..94719 1 NC_016904.1 KEGG: sew:SeSA_A4578 K88 fimbrial protein A; K88 fimbrial protein A 94719 11779930 EKO11_4759 Escherichia coli KO11FL K88 fimbrial protein A YP_005280372.1 94177 D 595495 CDS YP_005280373.1 378715482 11779931 94734..97178 1 NC_016904.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sew:SeSA_A4579 CshB porin; fimbrial biogenesis outer membrane usher protein 97178 11779931 EKO11_4760 Escherichia coli KO11FL fimbrial biogenesis outer membrane usher protein YP_005280373.1 94734 D 595495 CDS YP_005280374.1 378715483 11779932 97171..97947 1 NC_016904.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sew:SeSA_A4580 chaperone protein ClpE; Pili assembly chaperone, N-terminal protein 97947 11779932 EKO11_4761 Escherichia coli KO11FL Pili assembly chaperone, N-terminal protein YP_005280374.1 97171 D 595495 CDS YP_005280375.1 378715484 11779933 97982..98473 1 NC_016904.1 KEGG: sew:SeSA_A4581 K88 minor fimbrial protein FaeF; K88 minor fimbrial protein FaeF 98473 11779933 EKO11_4762 Escherichia coli KO11FL K88 minor fimbrial protein FaeF YP_005280375.1 97982 D 595495 CDS YP_005280376.1 378715485 11779934 98710..99567 1 NC_016904.1 PFAM: Fimbrial major/minor subunit; KEGG: eta:ETA_01640 K88 fimbrial protein AC precursor; Fimbrial major/minor subunit 99567 11779934 EKO11_4763 Escherichia coli KO11FL Fimbrial major/minor subunit YP_005280376.1 98710 D 595495 CDS YP_005280377.1 378715486 11779935 99663..100133 1 NC_016904.1 KEGG: kpe:KPK_A0163 hypothetical protein; hypothetical protein 100133 11779935 EKO11_4764 Escherichia coli KO11FL hypothetical protein YP_005280377.1 99663 D 595495 CDS YP_005280378.1 378715487 11779936 100130..100258 1 NC_016904.1 hypothetical protein 100258 11779936 EKO11_4765 Escherichia coli KO11FL hypothetical protein YP_005280378.1 100130 D 595495 CDS YP_005280379.1 378715488 11779937 100355..101947 1 NC_016904.1 KEGG: pmr:PMI3491 plasmid-related protein; plasmid-like protein 101947 11779937 EKO11_4766 Escherichia coli KO11FL plasmid-like protein YP_005280379.1 100355 D 595495 CDS YP_005280380.1 378715489 11779938 101982..103106 1 NC_016904.1 KEGG: enc:ECL_A049 hypothetical protein; hypothetical protein 103106 11779938 EKO11_4767 Escherichia coli KO11FL hypothetical protein YP_005280380.1 101982 D 595495 CDS YP_005280381.1 378715490 11779939 103106..103396 1 NC_016904.1 KEGG: kpu:pK2044_01240 hypothetical protein; hypothetical protein 103396 11779939 EKO11_4768 Escherichia coli KO11FL hypothetical protein YP_005280381.1 103106 D 595495 CDS YP_005280382.1 378715491 11779940 complement(103386..103583) 1 NC_016904.1 KEGG: enc:ECL_A054 hypothetical protein; hypothetical protein 103583 11779940 EKO11_4769 Escherichia coli KO11FL hypothetical protein YP_005280382.1 103386 R 595495 CDS