-- dump date 20140619_064826 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 882000001 SEQ_END SEQ_END NC_002937.3 3570858 3570858 DR NC_002937.3; contig end 3570858..3570858 Desulfovibrio vulgaris str. Hildenborough 882000002 SEQ_END SEQ_END NC_005863.1 202301 202301 DR NC_005863.1; contig end 202301..202301 Desulfovibrio vulgaris str. Hildenborough YP_009226.1 CDS dnaA-1 NC_002937.3 151 1464 D identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 151..1464 Desulfovibrio vulgaris str. Hildenborough 2794438 YP_009227.1 CDS dnaN NC_002937.3 1610 2764 D identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III subunit beta 1610..2764 Desulfovibrio vulgaris str. Hildenborough 2794971 YP_009228.1 CDS gyrB NC_002937.3 2766 5162 D identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B 2766..5162 Desulfovibrio vulgaris str. Hildenborough 2794972 YP_009229.1 CDS gyrA NC_002937.3 5262 7832 D identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 5262..7832 Desulfovibrio vulgaris str. Hildenborough 2794973 YP_009230.1 CDS DVU0005 NC_002937.3 7835 8620 D lipoprotein 7835..8620 Desulfovibrio vulgaris str. Hildenborough 2794228 YP_009231.1 CDS DVU0006 NC_002937.3 8913 9377 R identified by match to protein family HMM PF00582; universal stress protein complement(8913..9377) Desulfovibrio vulgaris str. Hildenborough 2794229 YP_009232.1 CDS asnC NC_002937.3 9552 10937 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(9552..10937) Desulfovibrio vulgaris str. Hildenborough 2793559 YP_009233.1 CDS DVU0008 NC_002937.3 11095 11220 R hypothetical protein complement(11095..11220) Desulfovibrio vulgaris str. Hildenborough 2793560 YP_009234.1 CDS DVU0009 NC_002937.3 11681 12961 R identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786; TRAP C4-dicarboxylate transport system permease DctM complement(11681..12961) Desulfovibrio vulgaris str. Hildenborough 2796536 YP_009235.1 CDS DVU0010 NC_002937.3 12958 13524 R identified by match to protein family HMM PF04290; TRAP C4-dicarboxylate transport system subunit DctQ complement(12958..13524) Desulfovibrio vulgaris str. Hildenborough 2796537 YP_009236.1 CDS DVU0011 NC_002937.3 13586 14611 R identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787; TRAP dicarboxylate family transporter subunit DctP complement(13586..14611) Desulfovibrio vulgaris str. Hildenborough 2796415 YP_009237.1 CDS DVU0012 NC_002937.3 15099 16301 D hypothetical protein 15099..16301 Desulfovibrio vulgaris str. Hildenborough 2796416 YP_009238.1 CDS DVU0013 NC_002937.3 16462 18270 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 16462..18270 Desulfovibrio vulgaris str. Hildenborough 2794453 YP_009239.1 CDS infA NC_002937.3 18470 18688 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(18470..18688) Desulfovibrio vulgaris str. Hildenborough 2794454 YP_009240.1 CDS lgt NC_002937.3 18804 19595 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(18804..19595) Desulfovibrio vulgaris str. Hildenborough 2796547 YP_009241.1 CDS DVU0016 NC_002937.3 19735 19839 D hypothetical protein 19735..19839 Desulfovibrio vulgaris str. Hildenborough 2796548 YP_009242.1 CDS DVU0017 NC_002937.3 19976 20152 R hypothetical protein complement(19976..20152) Desulfovibrio vulgaris str. Hildenborough 2794278 YP_009243.1 CDS DVU0018 NC_002937.3 20136 22385 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 20136..22385 Desulfovibrio vulgaris str. Hildenborough 2794279 YP_009244.1 CDS ngr NC_002937.3 22502 23110 R identified by similarity to SP:P30820; match to protein family HMM PF00301; match to protein family HMM PF02915; nigerythrin complement(22502..23110) Desulfovibrio vulgaris str. Hildenborough 2794280 YP_009245.1 CDS DVU0020 NC_002937.3 23221 23367 R hypothetical protein complement(23221..23367) Desulfovibrio vulgaris str. Hildenborough 2794952 YP_009246.1 CDS DVU0021 NC_002937.3 23612 24658 R identified by similarity to OMNI:AF0308; hypothetical protein complement(23612..24658) Desulfovibrio vulgaris str. Hildenborough 2794953 YP_009247.1 CDS DVU0022 NC_002937.3 24857 27238 R identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; HAMP domain/GGDEF domain/EAL domain-containing protein complement(24857..27238) Desulfovibrio vulgaris str. Hildenborough 2794596 YP_009248.1 CDS DVU0023 NC_002937.3 27228 27425 D hypothetical protein 27228..27425 Desulfovibrio vulgaris str. Hildenborough 2794597 YP_009249.1 CDS DVU0024 NC_002937.3 27468 27638 D identified by similarity to OMNI:NTL01TT0251; hypothetical protein 27468..27638 Desulfovibrio vulgaris str. Hildenborough 2793531 YP_009250.1 CDS DVU0025 NC_002937.3 27714 29873 R identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(27714..29873) Desulfovibrio vulgaris str. Hildenborough 2793532 YP_009251.1 CDS DVU0026 NC_002937.3 30487 31059 D identified by similarity to SP:O31482; hypothetical protein 30487..31059 Desulfovibrio vulgaris str. Hildenborough 2796782 YP_009252.1 CDS DVU0027 NC_002937.3 31278 32702 R identified by similarity to OMNI:NTL02ML3762; hypothetical protein complement(31278..32702) Desulfovibrio vulgaris str. Hildenborough 2794135 YP_009253.1 CDS csaA NC_002937.3 33232 33609 D identified by similarity to SP:P37584; match to protein family HMM PF01588; chaperone CsaA 33232..33609 Desulfovibrio vulgaris str. Hildenborough 2794136 YP_009254.1 CDS DVU0029 NC_002937.3 33986 35698 D identified by similarity to OMNI:NTL02MA4447; match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoinase/oxoprolinase 33986..35698 Desulfovibrio vulgaris str. Hildenborough 2793647 YP_003858602.1 CDS DVU4013 NC_002937.3 35979 36176 D hypothetical protein 35979..36176 Desulfovibrio vulgaris str. Hildenborough 9714863 YP_009255.1 CDS DVU0030 NC_002937.3 36482 37984 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(36482..37984) Desulfovibrio vulgaris str. Hildenborough 2793310 YP_009256.2 CDS DVU0031 NC_002937.3 38186 39172 D identified by match to protein family HMM PF03591; AzlC family protein 38186..39172 Desulfovibrio vulgaris str. Hildenborough 2793311 YP_009257.1 CDS DVU0032 NC_002937.3 39162 39497 D identified by similarity to OMNI:NTL01LM1435; match to protein family HMM PF06063; hypothetical protein 39162..39497 Desulfovibrio vulgaris str. Hildenborough 2795101 YP_009258.1 CDS DVU0033 NC_002937.3 39764 40378 D identified by match to protein family HMM PF00857; isochorismatase 39764..40378 Desulfovibrio vulgaris str. Hildenborough 2795102 YP_009259.1 CDS DVU0034 NC_002937.3 40526 41311 D identified by match to protein family HMM PF01323; DSBA-like thioredoxin domain-containing protein 40526..41311 Desulfovibrio vulgaris str. Hildenborough 2796462 YP_009260.1 CDS DVU0035 NC_002937.3 41700 41873 R hypothetical protein complement(41700..41873) Desulfovibrio vulgaris str. Hildenborough 2796463 YP_009261.1 CDS DVU0036 NC_002937.3 42287 42742 R hypothetical protein complement(42287..42742) Desulfovibrio vulgaris str. Hildenborough 2796464 YP_009262.1 CDS DVU0037 NC_002937.3 42924 43340 R identified by similarity to OMNI:NTL01TT1568; match to protein family HMM PF04463; hypothetical protein complement(42924..43340) Desulfovibrio vulgaris str. Hildenborough 2796635 YP_009263.1 CDS DVU0038 NC_002937.3 43678 45528 R identified by match to protein family HMM PF01553; acyltransferase domain-containing protein complement(43678..45528) Desulfovibrio vulgaris str. Hildenborough 2796636 YP_009264.1 CDS DVU0039 NC_002937.3 45740 46270 D identified by match to protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 45740..46270 Desulfovibrio vulgaris str. Hildenborough 2796560 YP_009265.1 CDS DVU0040 NC_002937.3 46450 47064 D hypothetical protein 46450..47064 Desulfovibrio vulgaris str. Hildenborough 2796561 YP_009266.1 CDS DVU0041 NC_002937.3 47257 49020 R identified by similarity to OMNI:SO4017; match to protein family HMM PF01464; match to protein family HMM PF01476; Slt family transglycosylase complement(47257..49020) Desulfovibrio vulgaris str. Hildenborough 2796562 YP_009267.2 CDS DVU0042 NC_002937.3 49163 50314 D identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; RNA methyltransferase 49163..50314 Desulfovibrio vulgaris str. Hildenborough 2796581 YP_009268.1 CDS fliQ NC_002937.3 50554 50823 R identified by similarity to SP:P33134; match to protein family HMM PF01313; match to protein family HMM TIGR01402; flagellar biosynthetic protein FliQ complement(50554..50823) Desulfovibrio vulgaris str. Hildenborough 2796752 YP_009269.1 CDS fliP NC_002937.3 50840 51547 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(50840..51547) Desulfovibrio vulgaris str. Hildenborough 2796753 YP_009270.1 CDS DVU0045 NC_002937.3 51576 52097 R flagellar biosynthesis protein, FliO complement(51576..52097) Desulfovibrio vulgaris str. Hildenborough 2796754 YP_009271.1 CDS fliN NC_002937.3 52090 52602 R identified by similarity to SP:P15070; match to protein family HMM PF01052; flagellar motor switch protein FliN complement(52090..52602) Desulfovibrio vulgaris str. Hildenborough 2794699 YP_009272.1 CDS DVU0047 NC_002937.3 52628 53143 R identified by similarity to SP:P23452; match to protein family HMM PF03748; flagellar protein FliL complement(52628..53143) Desulfovibrio vulgaris str. Hildenborough 2794700 YP_009273.1 CDS DVU0048 NC_002937.3 53164 53904 R identified by similarity to SP:O07887; match to protein family HMM PF00691; chemotaxis protein MotB complement(53164..53904) Desulfovibrio vulgaris str. Hildenborough 2793673 YP_009274.1 CDS DVU0049 NC_002937.3 53901 54995 R identified by similarity to SP:O07887; match to protein family HMM PF00691; OmpA family protein complement(53901..54995) Desulfovibrio vulgaris str. Hildenborough 2793674 YP_009275.1 CDS motA-1 NC_002937.3 55007 55765 R identified by similarity to SP:P28611; match to protein family HMM PF01618; chemotaxis protein MotA complement(55007..55765) Desulfovibrio vulgaris str. Hildenborough 2794510 YP_009276.2 CDS DVU0051 NC_002937.3 56041 56769 R identified by similarity to SP:O66631; match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein complement(56041..56769) Desulfovibrio vulgaris str. Hildenborough 2794511 YP_009277.1 CDS era NC_002937.3 56847 57773 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(56847..57773) Desulfovibrio vulgaris str. Hildenborough 2794512 YP_009278.2 CDS DVU0053 NC_002937.3 58041 60077 D identified by similarity to OMNI:CT0714; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; sulfate permease 58041..60077 Desulfovibrio vulgaris str. Hildenborough 2795764 YP_009279.1 CDS DVU0054 NC_002937.3 60507 61766 D identified by match to protein family HMM PF01207; dihydrouridine synthase 60507..61766 Desulfovibrio vulgaris str. Hildenborough 2795765 YP_009280.1 CDS ispH NC_002937.3 61763 62635 D identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216; hydroxymethylbutenyl pyrophosphate reductase 61763..62635 Desulfovibrio vulgaris str. Hildenborough 2794178 YP_009281.1 CDS cheV-1 NC_002937.3 62676 63629 D identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 62676..63629 Desulfovibrio vulgaris str. Hildenborough 2794179 YP_009282.1 CDS DVU0057 NC_002937.3 63889 64530 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 63889..64530 Desulfovibrio vulgaris str. Hildenborough 2793369 YP_009283.1 CDS DVU0058 NC_002937.3 64527 65678 D identified by similarity to OMNI:CC1787; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 64527..65678 Desulfovibrio vulgaris str. Hildenborough 2793370 YP_009284.1 CDS DVU0059 NC_002937.3 65675 69385 D identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 65675..69385 Desulfovibrio vulgaris str. Hildenborough 2793371 YP_009285.1 CDS DVU0060 NC_002937.3 69540 70724 D identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 69540..70724 Desulfovibrio vulgaris str. Hildenborough 2796165 YP_009286.1 CDS DVU0061 NC_002937.3 70740 73880 D identified by similarity to GP:18496807; match to protein family HMM PF00873; match to protein family HMM TIGR00915; multidrug resistance protein 70740..73880 Desulfovibrio vulgaris str. Hildenborough 2794399 YP_009287.1 CDS DVU0062 NC_002937.3 73877 75391 D identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein 73877..75391 Desulfovibrio vulgaris str. Hildenborough 2796166 YP_009288.1 CDS DVU0063 NC_002937.3 75421 75861 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 75421..75861 Desulfovibrio vulgaris str. Hildenborough 2793612 YP_009289.1 CDS DVU0064 NC_002937.3 75950 76858 D hypothetical protein 75950..76858 Desulfovibrio vulgaris str. Hildenborough 2793613 YP_009290.1 CDS DVU0065 NC_002937.3 77110 77907 D hypothetical protein 77110..77907 Desulfovibrio vulgaris str. Hildenborough 2795212 YP_009291.1 CDS DVU0066 NC_002937.3 78122 78691 D identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase domain-containing protein 78122..78691 Desulfovibrio vulgaris str. Hildenborough 2795213 YP_009292.1 CDS DVU0067 NC_002937.3 78862 79170 R hypothetical protein complement(78862..79170) Desulfovibrio vulgaris str. Hildenborough 2795214 YP_009293.1 CDS DVU0068 NC_002937.3 79547 81082 R identified by similarity to OMNI:NTL01PF0547; hypothetical protein complement(79547..81082) Desulfovibrio vulgaris str. Hildenborough 2796766 YP_009294.1 CDS DVU0069 NC_002937.3 81263 85666 R hypothetical protein complement(81263..85666) Desulfovibrio vulgaris str. Hildenborough 2796767 YP_009295.1 CDS DVU0070 NC_002937.3 85666 87021 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase complement(85666..87021) Desulfovibrio vulgaris str. Hildenborough 2794173 YP_009296.1 CDS dinP NC_002937.3 87539 88699 D identified by similarity to SP:Q47155; match to protein family HMM PF00817; DNA polymerase IV 87539..88699 Desulfovibrio vulgaris str. Hildenborough 2794886 YP_009297.1 CDS DVU0072 NC_002937.3 89105 89884 D identified by similarity to SP:P26396; match to protein family HMM PF00483; glucose-1-phosphate cytidylyltransferase 89105..89884 Desulfovibrio vulgaris str. Hildenborough 2794887 YP_009298.1 CDS DVU0073 NC_002937.3 89894 91000 D identified by similarity to GP:1197641; CDP-glucose-4,6-dehydratase 89894..91000 Desulfovibrio vulgaris str. Hildenborough 2794888 YP_009299.1 CDS DVU0074 NC_002937.3 90988 91431 D identified by similarity to SP:P39631; polysaccharide biosynthesis domain-containing protein 90988..91431 Desulfovibrio vulgaris str. Hildenborough 2795013 YP_009300.1 CDS DVU0075 NC_002937.3 91765 92898 D identified by match to protein family HMM PF01041; aminotransferase 91765..92898 Desulfovibrio vulgaris str. Hildenborough 2795014 YP_009301.2 CDS DVU0076 NC_002937.3 92916 93953 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 92916..93953 Desulfovibrio vulgaris str. Hildenborough 2795015 YP_009302.1 CDS DVU0077 NC_002937.3 94316 95398 D identified by similarity to GP:27349066; hypothetical protein 94316..95398 Desulfovibrio vulgaris str. Hildenborough 2794407 YP_009303.1 CDS DVU0078 NC_002937.3 95445 95786 D identified by similarity to OMNI:CT0076; hypothetical protein 95445..95786 Desulfovibrio vulgaris str. Hildenborough 2794408 YP_009304.1 CDS DVU0079 NC_002937.3 96159 96962 D identified by similarity to SP:Q06916; match to protein family HMM PF02535; ZIP zinc transporter family protein 96159..96962 Desulfovibrio vulgaris str. Hildenborough 2794409 YP_009305.1 CDS fumC NC_002937.3 97000 98406 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 97000..98406 Desulfovibrio vulgaris str. Hildenborough 2794226 YP_009306.1 CDS DVU0081 NC_002937.3 98559 100289 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator complement(98559..100289) Desulfovibrio vulgaris str. Hildenborough 2794227 YP_009307.1 CDS DVU0082 NC_002937.3 100383 101975 R identified by similarity to GP:12543284; hypothetical protein complement(100383..101975) Desulfovibrio vulgaris str. Hildenborough 2796749 YP_009308.1 CDS DVU0083 NC_002937.3 102105 102524 D identified by similarity to OMNI:NTL01TE1132; match to protein family HMM PF03745; hypothetical protein 102105..102524 Desulfovibrio vulgaris str. Hildenborough 2796750 YP_009309.1 CDS DVU0084 NC_002937.3 102596 103648 R identified by match to protein family HMM PF01008; match to protein family HMM TIGR00524; aIF-2BI family translation initiation factor complement(102596..103648) Desulfovibrio vulgaris str. Hildenborough 2796751 YP_009310.1 CDS trpB-1 NC_002937.3 104165 105409 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 104165..105409 Desulfovibrio vulgaris str. Hildenborough 2793579 YP_009311.1 CDS DVU0086 NC_002937.3 105446 105667 R hypothetical protein complement(105446..105667) Desulfovibrio vulgaris str. Hildenborough 2793580 YP_009312.1 CDS DVU0087 NC_002937.3 111902 112396 D identified by similarity to GP:29897211; match to protein family HMM PF06196; hypothetical protein 111902..112396 Desulfovibrio vulgaris str. Hildenborough 2794253 YP_009313.1 CDS panF NC_002937.3 112393 113880 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 112393..113880 Desulfovibrio vulgaris str. Hildenborough 2794639 YP_009314.1 CDS DVU0089 NC_002937.3 113936 114739 R identified by similarity to OMNI:VCA0583; hypothetical protein complement(113936..114739) Desulfovibrio vulgaris str. Hildenborough 2794640 YP_009315.1 CDS wcaG NC_002937.3 115316 116287 D identified by similarity to SP:P32055; GDP-fucose synthetase 115316..116287 Desulfovibrio vulgaris str. Hildenborough 2794641 YP_009316.1 CDS DVU0091 NC_002937.3 116340 117062 D identified by similarity to OMNI:NTL01SS01089; hypothetical protein 116340..117062 Desulfovibrio vulgaris str. Hildenborough 2796240 YP_009317.1 CDS DVU0092 NC_002937.3 117119 120436 R identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(117119..120436) Desulfovibrio vulgaris str. Hildenborough 2796241 YP_009318.1 CDS DVU0093 NC_002937.3 120692 123142 R identified by match to protein family HMM PF00534; match to protein family HMM PF02231; glycosyl transferase domain-containing protein complement(120692..123142) Desulfovibrio vulgaris str. Hildenborough 2796242 YP_009319.1 CDS DVU0094 NC_002937.3 123374 125536 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 123374..125536 Desulfovibrio vulgaris str. Hildenborough 2796243 YP_009320.1 CDS DVU0095 NC_002937.3 125677 126714 R identified by similarity to SP:P23861; match to protein family HMM PF01547; polyamine ABC transporter periplasmic polyamine-binding protein complement(125677..126714) Desulfovibrio vulgaris str. Hildenborough 2796175 YP_009321.1 CDS potC NC_002937.3 126716 127489 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter complement(126716..127489) Desulfovibrio vulgaris str. Hildenborough 2796176 YP_009322.1 CDS potB NC_002937.3 127492 128379 R identified by similarity to SP:P23860; match to protein family HMM PF00528; polyamine ABC transporter permease complement(127492..128379) Desulfovibrio vulgaris str. Hildenborough 2796177 YP_009323.1 CDS potA NC_002937.3 128366 129472 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase complement(128366..129472) Desulfovibrio vulgaris str. Hildenborough 2796544 YP_009324.1 CDS DVU0099 NC_002937.3 129890 131050 R identified by similarity to SP:P02929; match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB domain-containing protein complement(129890..131050) Desulfovibrio vulgaris str. Hildenborough 2796545 YP_009325.1 CDS DVU0100 NC_002937.3 131347 133296 D identified by match to protein family HMM PF00593; TonB-dependent receptor 131347..133296 Desulfovibrio vulgaris str. Hildenborough 2796546 YP_009326.1 CDS DVU0101 NC_002937.3 133407 134933 D identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 133407..134933 Desulfovibrio vulgaris str. Hildenborough 2793699 YP_009327.1 CDS DVU0102 NC_002937.3 135121 136113 D identified by match to protein family HMM PF01297; cation ABC transporter periplasmic binding protein 135121..136113 Desulfovibrio vulgaris str. Hildenborough 2793700 YP_009328.1 CDS DVU0103 NC_002937.3 136146 137087 D identified by similarity to OMNI:NTL02SC0434; match to protein family HMM PF00005; cation ABC transporter ATP-binding protein 136146..137087 Desulfovibrio vulgaris str. Hildenborough 2793701 YP_009329.1 CDS DVU0104 NC_002937.3 137096 137932 D identified by similarity to SP:P44661; match to protein family HMM PF00950; cation ABC transporter permease 137096..137932 Desulfovibrio vulgaris str. Hildenborough 2793702 YP_009330.1 CDS DVU0105 NC_002937.3 138176 138910 R identified by similarity to SP:P10346; match to protein family HMM PF00005; glutamine ABC transporter ATP-binding protein complement(138176..138910) Desulfovibrio vulgaris str. Hildenborough 2795642 YP_009331.1 CDS glnP NC_002937.3 138984 139655 R identified by similarity to SP:P10345; match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine ABC transporter permease complement(138984..139655) Desulfovibrio vulgaris str. Hildenborough 2795643 YP_009332.1 CDS glnH NC_002937.3 139770 140519 R identified by similarity to SP:P10344; match to protein family HMM PF00497; glutamine ABC transporter periplasmic glutamine-binding protein complement(139770..140519) Desulfovibrio vulgaris str. Hildenborough 2795644 YP_009333.1 CDS DVU0108 NC_002937.3 140811 140918 R hypothetical protein complement(140811..140918) Desulfovibrio vulgaris str. Hildenborough 2793307 YP_009334.1 CDS DVU0109 NC_002937.3 141455 142687 D identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 141455..142687 Desulfovibrio vulgaris str. Hildenborough 2793308 YP_009335.1 CDS DVU0110 NC_002937.3 142672 144102 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 142672..144102 Desulfovibrio vulgaris str. Hildenborough 2793309 YP_009336.1 CDS DVU0111 NC_002937.3 144236 145042 D identified by match to protein family HMM PF00072; response regulator 144236..145042 Desulfovibrio vulgaris str. Hildenborough 2794980 YP_009337.1 CDS DVU0112 NC_002937.3 145051 146475 D identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441; deoxyribodipyrimidine photolyase 145051..146475 Desulfovibrio vulgaris str. Hildenborough 2794981 YP_009338.1 CDS hisI NC_002937.3 147117 147497 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 147117..147497 Desulfovibrio vulgaris str. Hildenborough 2794982 YP_009339.1 CDS hisG NC_002937.3 147494 148375 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 147494..148375 Desulfovibrio vulgaris str. Hildenborough 2794983 YP_009340.1 CDS aroE NC_002937.3 148475 149380 D identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 148475..149380 Desulfovibrio vulgaris str. Hildenborough 2794719 YP_009341.1 CDS DVU0116 NC_002937.3 149719 150795 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 149719..150795 Desulfovibrio vulgaris str. Hildenborough 2794720 YP_009342.1 CDS DVU0117 NC_002937.3 150843 151760 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(150843..151760) Desulfovibrio vulgaris str. Hildenborough 2794721 YP_009343.1 CDS DVU0118 NC_002937.3 152047 153411 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator complement(152047..153411) Desulfovibrio vulgaris str. Hildenborough 2796783 YP_009344.1 CDS DVU0119 NC_002937.3 153408 155072 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(153408..155072) Desulfovibrio vulgaris str. Hildenborough 2796784 YP_009345.1 CDS DVU0120 NC_002937.3 155069 156007 R identified by similarity to SP:P16682; ABC transporter substrate-binding protein complement(155069..156007) Desulfovibrio vulgaris str. Hildenborough 2796785 YP_009346.1 CDS DVU0121 NC_002937.3 156057 156500 R identified by similarity to OMNI:NTL01MT00980; hypothetical protein complement(156057..156500) Desulfovibrio vulgaris str. Hildenborough 2796786 YP_009347.1 CDS DVU0122 NC_002937.3 156582 156680 R hypothetical protein complement(156582..156680) Desulfovibrio vulgaris str. Hildenborough 2794728 YP_009348.1 CDS DVU0123 NC_002937.3 156693 157775 R identified by similarity to OMNI:NTL02ML1727; match to protein family HMM PF03601; hypothetical protein complement(156693..157775) Desulfovibrio vulgaris str. Hildenborough 2794729 YP_009349.1 CDS DVU0124 NC_002937.3 157822 158010 D hypothetical protein 157822..158010 Desulfovibrio vulgaris str. Hildenborough 2794730 YP_009350.1 CDS DVU0125 NC_002937.3 158213 159346 D hypothetical protein 158213..159346 Desulfovibrio vulgaris str. Hildenborough 2794299 YP_009351.1 CDS DVU0126 NC_002937.3 159343 162858 D identified by similarity to SP:P37624; match to protein family HMM PF00005; ABC transporter ATP-binding protein 159343..162858 Desulfovibrio vulgaris str. Hildenborough 2794300 YP_009352.1 CDS DVU0127 NC_002937.3 162862 163974 D identified by similarity to SP:P75774; hypothetical protein 162862..163974 Desulfovibrio vulgaris str. Hildenborough 2794301 YP_009353.1 CDS DVU0128 NC_002937.3 164190 165248 R identified by similarity to OMNI:NTL03PA01626; match to protein family HMM PF01594; hypothetical protein complement(164190..165248) Desulfovibrio vulgaris str. Hildenborough 2794302 YP_009354.1 CDS DVU0129 NC_002937.3 165493 166851 D identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277; sensory box protein 165493..166851 Desulfovibrio vulgaris str. Hildenborough 2794479 YP_009355.1 CDS DVU0130 NC_002937.3 167030 167692 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphoglycolate phosphatase complement(167030..167692) Desulfovibrio vulgaris str. Hildenborough 2794480 YP_009356.1 CDS DVU0131 NC_002937.3 167947 168069 R hypothetical protein complement(167947..168069) Desulfovibrio vulgaris str. Hildenborough 2794481 YP_009357.1 CDS DVU0132 NC_002937.3 168235 169359 D identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925; hypothetical protein 168235..169359 Desulfovibrio vulgaris str. Hildenborough 2794155 YP_009358.1 CDS DVU0133 NC_002937.3 169361 170083 D hypothetical protein 169361..170083 Desulfovibrio vulgaris str. Hildenborough 2794156 YP_009359.1 CDS DVU0134 NC_002937.3 170444 171481 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(170444..171481) Desulfovibrio vulgaris str. Hildenborough 2794157 YP_009360.1 CDS DVU0135 NC_002937.3 171562 172473 R identified by similarity to OMNI:NTL01AA00924; hypothetical protein complement(171562..172473) Desulfovibrio vulgaris str. Hildenborough 2794158 YP_009361.1 CDS DVU0136 NC_002937.3 172638 172856 R hypothetical protein complement(172638..172856) Desulfovibrio vulgaris str. Hildenborough 2794159 YP_009362.1 CDS DVU0137 NC_002937.3 172910 173035 R hypothetical protein complement(172910..173035) Desulfovibrio vulgaris str. Hildenborough 2793576 YP_009363.1 CDS DVU0138 NC_002937.3 173086 173466 D identified by match to protein family HMM PF00072; response regulator 173086..173466 Desulfovibrio vulgaris str. Hildenborough 2793577 YP_009364.1 CDS DVU0139 NC_002937.3 173772 175484 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 173772..175484 Desulfovibrio vulgaris str. Hildenborough 2793578 YP_009365.1 CDS DVU0140 NC_002937.3 175592 176005 D identified by match to protein family HMM PF00072; response regulator 175592..176005 Desulfovibrio vulgaris str. Hildenborough 2796556 YP_009366.1 CDS DVU0141 NC_002937.3 176335 177009 D identified by match to protein family HMM PF02163; M50 family peptidase 176335..177009 Desulfovibrio vulgaris str. Hildenborough 2796557 YP_009367.1 CDS trpS NC_002937.3 177038 178027 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 177038..178027 Desulfovibrio vulgaris str. Hildenborough 2796558 YP_009368.1 CDS DVU0143 NC_002937.3 178039 178815 D identified by similarity to OMNI:CT0872; match to protein family HMM PF03692; hypothetical protein 178039..178815 Desulfovibrio vulgaris str. Hildenborough 2796559 YP_009369.1 CDS DVU0144 NC_002937.3 179041 179643 D identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; cytidyltransferase-like protein 179041..179643 Desulfovibrio vulgaris str. Hildenborough 2796577 YP_009370.1 CDS DVU0145 NC_002937.3 180029 180436 R identified by match to protein family HMM PF00072; response regulator complement(180029..180436) Desulfovibrio vulgaris str. Hildenborough 2796578 YP_009371.1 CDS DVU0146 NC_002937.3 180580 181389 R hypothetical protein complement(180580..181389) Desulfovibrio vulgaris str. Hildenborough 2796579 YP_009372.1 CDS DVU0147 NC_002937.3 181386 181646 R lipoprotein complement(181386..181646) Desulfovibrio vulgaris str. Hildenborough 2796580 YP_009373.1 CDS DVU0148 NC_002937.3 181719 182330 R lipoprotein complement(181719..182330) Desulfovibrio vulgaris str. Hildenborough 2796745 YP_009374.1 CDS DVU0149 NC_002937.3 182353 183405 R identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925; hypothetical protein complement(182353..183405) Desulfovibrio vulgaris str. Hildenborough 2796746 YP_009375.1 CDS DVU0150 NC_002937.3 183427 183723 R hypothetical protein complement(183427..183723) Desulfovibrio vulgaris str. Hildenborough 2796747 YP_009376.1 CDS DVU0151 NC_002937.3 184043 186916 D identified by match to protein family HMM PF00158; match to protein family HMM PF00672; HAMP domain/sigma-54 interaction domain-containing protein 184043..186916 Desulfovibrio vulgaris str. Hildenborough 2796748 YP_009377.1 CDS DVU0152 NC_002937.3 186986 189547 D identified by similarity to SP:P42850; match to protein family HMM PF00391; match to protein family HMM PF01326; phosphoenolpyruvate synthase 186986..189547 Desulfovibrio vulgaris str. Hildenborough 2794925 YP_009378.1 CDS DVU0153 NC_002937.3 190004 190387 R hypothetical protein complement(190004..190387) Desulfovibrio vulgaris str. Hildenborough 2794927 YP_009379.1 CDS DVU0154 NC_002937.3 190401 190568 D hypothetical protein 190401..190568 Desulfovibrio vulgaris str. Hildenborough 2796696 YP_009380.1 CDS DVU0155 NC_002937.3 190855 192243 D identified by match to protein family HMM PF01663; type I phosphodiesterase/nucleotide pyrophosphatase 190855..192243 Desulfovibrio vulgaris str. Hildenborough 2796697 YP_009381.1 CDS DVU0156 NC_002937.3 192240 194399 D identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 192240..194399 Desulfovibrio vulgaris str. Hildenborough 2796698 YP_009382.1 CDS thiL NC_002937.3 194396 195367 D identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamin-monophosphate kinase 194396..195367 Desulfovibrio vulgaris str. Hildenborough 2796699 YP_009383.1 CDS DVU0158 NC_002937.3 195388 196386 D identified by match to protein family HMM PF00596; match to protein family HMM PF01980; match to protein family HMM TIGR00104; hypothetical protein 195388..196386 Desulfovibrio vulgaris str. Hildenborough 2795033 YP_009384.1 CDS DVU0159 NC_002937.3 196600 197121 R identified by match to protein family HMM PF03061; thioesterase complement(196600..197121) Desulfovibrio vulgaris str. Hildenborough 2795034 YP_009385.1 CDS DVU0160 NC_002937.3 197147 198142 R identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; carbohydrate isomerase KpsF/GutQ family protein complement(197147..198142) Desulfovibrio vulgaris str. Hildenborough 2795035 YP_009386.1 CDS purF NC_002937.3 198445 199833 R identified by similarity to SP:P00497; match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase complement(198445..199833) Desulfovibrio vulgaris str. Hildenborough 2795036 YP_009387.1 CDS carB NC_002937.3 199861 203094 R identified by similarity to SP:P00968; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit complement(199861..203094) Desulfovibrio vulgaris str. Hildenborough 2796778 YP_009388.1 CDS DVU0163 NC_002937.3 203533 204093 D lipoprotein 203533..204093 Desulfovibrio vulgaris str. Hildenborough 2796779 YP_009389.1 CDS DVU0164 NC_002937.3 204157 205065 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 204157..205065 Desulfovibrio vulgaris str. Hildenborough 2796780 YP_009390.1 CDS DVU0165 NC_002937.3 205350 206363 R identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein complement(205350..206363) Desulfovibrio vulgaris str. Hildenborough 2793571 YP_009391.1 CDS DVU0166 NC_002937.3 206374 207360 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein complement(206374..207360) Desulfovibrio vulgaris str. Hildenborough 2793572 YP_009392.1 CDS DVU0167 NC_002937.3 207363 208283 R identified by match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease complement(207363..208283) Desulfovibrio vulgaris str. Hildenborough 2793573 YP_009393.1 CDS DVU0168 NC_002937.3 208285 209262 R identified by match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease complement(208285..209262) Desulfovibrio vulgaris str. Hildenborough 2793574 YP_009394.1 CDS DVU0169 NC_002937.3 209432 210994 R identified by match to protein family HMM PF00496; oligopeptide/dipeptide ABC transporter periplasmic oligopeptide/dipeptide-binding protein complement(209432..210994) Desulfovibrio vulgaris str. Hildenborough 2793575 YP_009395.1 CDS DVU0170 NC_002937.3 211427 213496 D identified by match to protein family HMM PF00015; match to protein family HMM PF01814; methyl-accepting chemotaxis protein 211427..213496 Desulfovibrio vulgaris str. Hildenborough 2795600 YP_009396.1 CDS DVU0171 NC_002937.3 213725 214906 R identified by similarity to GP:1019859; match to protein family HMM PF00155; hemolysin-like protein complement(213725..214906) Desulfovibrio vulgaris str. Hildenborough 2795601 YP_009397.1 CDS DVU0172 NC_002937.3 215484 216485 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein complement(215484..216485) Desulfovibrio vulgaris str. Hildenborough 2795602 YP_009398.1 CDS DVU0173 NC_002937.3 216495 218696 R identified by similarity to SP:P37600; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; thiosulfate reductase complement(216495..218696) Desulfovibrio vulgaris str. Hildenborough 2795603 YP_009399.1 CDS DVU0174 NC_002937.3 218674 218781 R hypothetical protein complement(218674..218781) Desulfovibrio vulgaris str. Hildenborough 2795624 YP_009400.1 CDS DVU0175 NC_002937.3 219258 220889 R identified by similarity to GP:4589921; similarity to OMNI:AF0177; match to protein family HMM PF00994; match to protein family HMM PF02663; tungsten formylmethanofuran dehydrogenase/molybdopterin binding protein complement(219258..220889) Desulfovibrio vulgaris str. Hildenborough 2795625 YP_009401.1 CDS DVU0176 NC_002937.3 221145 222044 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(221145..222044) Desulfovibrio vulgaris str. Hildenborough 2795626 YP_009402.1 CDS modA NC_002937.3 222194 223003 R identified by similarity to SP:P37329; match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter periplasmic molybdenum-binding protein complement(222194..223003) Desulfovibrio vulgaris str. Hildenborough 2795627 YP_009404.2 CDS DVU0179 NC_002937.3 223208 224605 D identified by similarity to SP:Q08385; similarity to OMNI:CC3006; match to protein family HMM PF00589; match to protein family HMM PF03459; match to protein family HMM TIGR00638; fused molybdenum-pterin binding domain-containing protein/site-specific recombinase phage integrase 223208..224605 Desulfovibrio vulgaris str. Hildenborough 2795621 YP_009405.1 CDS modC NC_002937.3 224592 225353 R identified by similarity to SP:P37732; match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein complement(224592..225353) Desulfovibrio vulgaris str. Hildenborough 2795622 YP_009406.1 CDS modB NC_002937.3 225350 226051 R identified by similarity to SP:P09834; match to protein family HMM PF00528; match to protein family HMM TIGR01095; molybdenum ABC transporter permease complement(225350..226051) Desulfovibrio vulgaris str. Hildenborough 2795623 YP_009407.1 CDS DVU0182 NC_002937.3 226416 227339 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(226416..227339) Desulfovibrio vulgaris str. Hildenborough 2795645 YP_009408.1 CDS DVU0183 NC_002937.3 227507 229276 R identified by similarity to OMNI:PP0317; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(227507..229276) Desulfovibrio vulgaris str. Hildenborough 2795646 YP_009409.1 CDS DVU0184 NC_002937.3 229405 229824 D hypothetical protein 229405..229824 Desulfovibrio vulgaris str. Hildenborough 2795647 YP_009410.1 CDS DVU0185 NC_002937.3 229850 229915 D hypothetical protein 229850..229915 Desulfovibrio vulgaris str. Hildenborough 2795648 YP_009411.1 CDS DVU0186 NC_002937.3 230021 230800 D identified by similarity to OMNI:AF2126; match to protein family HMM PF02596; hypothetical protein 230021..230800 Desulfovibrio vulgaris str. Hildenborough 2795711 YP_009412.1 CDS DVU0187 NC_002937.3 231222 232313 R identified by similarity to SP:P76237; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(231222..232313) Desulfovibrio vulgaris str. Hildenborough 2795712 YP_009413.1 CDS DVU0188 NC_002937.3 232303 232452 D hypothetical protein 232303..232452 Desulfovibrio vulgaris str. Hildenborough 2795713 YP_009414.1 CDS DVU0189 NC_002937.3 233752 235437 D identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613; P4 family phage/plasmid primase 233752..235437 Desulfovibrio vulgaris str. Hildenborough 2795715 YP_009415.1 CDS DVU0190 NC_002937.3 235434 235646 R hypothetical protein complement(235434..235646) Desulfovibrio vulgaris str. Hildenborough 2795740 YP_009416.1 CDS DVU0191 NC_002937.3 235704 237263 D identified by similarity to OMNI:CC3049; hypothetical protein 235704..237263 Desulfovibrio vulgaris str. Hildenborough 2795741 YP_009417.1 CDS DVU0192 NC_002937.3 237390 238748 D identified by match to protein family HMM PF01555; match to protein family HMM PF02195; adenine specific DNA methyltransferase 237390..238748 Desulfovibrio vulgaris str. Hildenborough 2795742 YP_009418.1 CDS DVU0193 NC_002937.3 238741 239472 D hypothetical protein 238741..239472 Desulfovibrio vulgaris str. Hildenborough 2795743 YP_009419.1 CDS DVU0194 NC_002937.3 239489 241447 D identified by similarity to GP:6723224; terminase large subunit 239489..241447 Desulfovibrio vulgaris str. Hildenborough 2795744 YP_009420.1 CDS DVU0195 NC_002937.3 241444 241662 D hypothetical protein 241444..241662 Desulfovibrio vulgaris str. Hildenborough 2795745 YP_009421.1 CDS DVU0196 NC_002937.3 242191 242586 D hypothetical protein 242191..242586 Desulfovibrio vulgaris str. Hildenborough 2795746 YP_009422.1 CDS DVU0197 NC_002937.3 242590 244290 D identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; lambda family phage portal protein 242590..244290 Desulfovibrio vulgaris str. Hildenborough 2795747 YP_009423.1 CDS DVU0198 NC_002937.3 244274 245593 D identified by match to protein family HMM PF01343; minor capsid protein C, degenerate 244274..245593 Desulfovibrio vulgaris str. Hildenborough 2795748 YP_009424.1 CDS DVU0199 NC_002937.3 245603 245986 D identified by similarity to OMNI:NTL01RS0859; hypothetical protein 245603..245986 Desulfovibrio vulgaris str. Hildenborough 2794270 YP_009425.1 CDS DVU0200 NC_002937.3 245998 247002 D identified by match to protein family HMM PF03864; major head protein 245998..247002 Desulfovibrio vulgaris str. Hildenborough 2794271 YP_009426.1 CDS DVU0201 NC_002937.3 247011 247331 D hypothetical protein 247011..247331 Desulfovibrio vulgaris str. Hildenborough 2794272 YP_009427.1 CDS DVU0202 NC_002937.3 247334 247822 D identified by match to protein family HMM TIGR01593; holin 247334..247822 Desulfovibrio vulgaris str. Hildenborough 2794273 YP_009428.1 CDS DVU0203 NC_002937.3 247843 248391 D identified by match to protein family HMM PF05838; hypothetical protein 247843..248391 Desulfovibrio vulgaris str. Hildenborough 2794528 YP_009429.1 CDS DVU0204 NC_002937.3 248409 248819 D lipoprotein 248409..248819 Desulfovibrio vulgaris str. Hildenborough 2794529 YP_009430.1 CDS DVU0205 NC_002937.3 248812 248979 D hypothetical protein 248812..248979 Desulfovibrio vulgaris str. Hildenborough 2794530 YP_009431.1 CDS DVU0206 NC_002937.3 248982 249575 D hypothetical protein 248982..249575 Desulfovibrio vulgaris str. Hildenborough 2794531 YP_009432.1 CDS DVU0207 NC_002937.3 249572 249898 D hypothetical protein 249572..249898 Desulfovibrio vulgaris str. Hildenborough 2795481 YP_009433.1 CDS DVU0208 NC_002937.3 249895 250452 D hypothetical protein 249895..250452 Desulfovibrio vulgaris str. Hildenborough 2795482 YP_009434.1 CDS DVU0209 NC_002937.3 250436 250627 D identified by similarity to GP:1834290; hypothetical protein 250436..250627 Desulfovibrio vulgaris str. Hildenborough 2795483 YP_009435.1 CDS DVU0210 NC_002937.3 250631 252094 D identified by similarity to SP:P79678; tail sheath protein 250631..252094 Desulfovibrio vulgaris str. Hildenborough 2795484 YP_009436.1 CDS DVU0211 NC_002937.3 252144 252509 D identified by similarity to SP:P79679; tail tube protein 252144..252509 Desulfovibrio vulgaris str. Hildenborough 2794505 YP_009437.1 CDS DVU0212 NC_002937.3 252509 252769 D identified by similarity to OMNI:NTL03ST4078; hypothetical protein 252509..252769 Desulfovibrio vulgaris str. Hildenborough 2794506 YP_009438.1 CDS DVU0213 NC_002937.3 252969 254459 D hypothetical protein 252969..254459 Desulfovibrio vulgaris str. Hildenborough 2794507 YP_009439.1 CDS DVU0214 NC_002937.3 254468 255667 D identified by similarity to GP:19483753; tail/DNA circulation protein 254468..255667 Desulfovibrio vulgaris str. Hildenborough 2794508 YP_009440.1 CDS DVU0215 NC_002937.3 255790 256923 D identified by similarity to SP:P08558; tail protein 255790..256923 Desulfovibrio vulgaris str. Hildenborough 2794509 YP_009441.1 CDS DVU0216 NC_002937.3 256925 257563 D identified by match to protein family HMM TIGR01644; phage baseplate assembly protein V 256925..257563 Desulfovibrio vulgaris str. Hildenborough 2795069 YP_009442.1 CDS DVU0217 NC_002937.3 257565 258041 D identified by similarity to GP:19483756; tail protein 257565..258041 Desulfovibrio vulgaris str. Hildenborough 2795070 YP_009443.1 CDS DVU0218 NC_002937.3 258050 259111 D identified by similarity to GP:19483757; tail protein 258050..259111 Desulfovibrio vulgaris str. Hildenborough 2795071 YP_009444.1 CDS DVU0219 NC_002937.3 259120 259746 D identified by similarity to GP:19483737; tail protein 259120..259746 Desulfovibrio vulgaris str. Hildenborough 2795072 YP_009445.1 CDS DVU0220 NC_002937.3 259739 260755 D tail fiber protein 259739..260755 Desulfovibrio vulgaris str. Hildenborough 2795300 YP_009446.1 CDS DVU0221 NC_002937.3 260765 261208 D tail fiber assembly protein 260765..261208 Desulfovibrio vulgaris str. Hildenborough 2795301 YP_009447.1 CDS DVU0222 NC_002937.3 261220 261549 D hypothetical protein 261220..261549 Desulfovibrio vulgaris str. Hildenborough 2795302 YP_009448.1 CDS DVU0223 NC_002937.3 261649 261831 D identified by similarity to OMNI:NTL02MA0751; hypothetical protein 261649..261831 Desulfovibrio vulgaris str. Hildenborough 2795303 YP_009449.1 CDS DVU0224 NC_002937.3 261875 262270 D identified by similarity to OMNI:CC3185; hypothetical protein 261875..262270 Desulfovibrio vulgaris str. Hildenborough 2796773 YP_009450.1 CDS DVU0225 NC_002937.3 262334 262510 D hypothetical protein 262334..262510 Desulfovibrio vulgaris str. Hildenborough 2796774 YP_009451.1 CDS DVU0226 NC_002937.3 262657 263796 R hypothetical protein complement(262657..263796) Desulfovibrio vulgaris str. Hildenborough 2796775 YP_009452.1 CDS DVU0227 NC_002937.3 263799 264329 R identified by similarity to OMNI:VC1871; hypothetical protein complement(263799..264329) Desulfovibrio vulgaris str. Hildenborough 2796776 YP_009453.1 CDS DVU0228 NC_002937.3 264667 264765 D hypothetical protein 264667..264765 Desulfovibrio vulgaris str. Hildenborough 2796777 YP_009454.1 CDS DVU0229 NC_002937.3 265046 265222 R hypothetical protein complement(265046..265222) Desulfovibrio vulgaris str. Hildenborough 2794274 YP_009455.1 CDS DVU0230 NC_002937.3 265802 266266 D transcriptional regulator cII 265802..266266 Desulfovibrio vulgaris str. Hildenborough 2794275 YP_009456.1 CDS DVU0231 NC_002937.3 266347 266571 D hypothetical protein 266347..266571 Desulfovibrio vulgaris str. Hildenborough 2794276 YP_009457.1 CDS DVU0232 NC_002937.3 266564 266812 D hypothetical protein 266564..266812 Desulfovibrio vulgaris str. Hildenborough 2794277 YP_009458.1 CDS DVU0233 NC_002937.3 266937 267239 R hypothetical protein complement(266937..267239) Desulfovibrio vulgaris str. Hildenborough 2796582 YP_009459.1 CDS DVU0234 NC_002937.3 267982 268305 D hypothetical protein 267982..268305 Desulfovibrio vulgaris str. Hildenborough 2796583 YP_009460.1 CDS DVU0235 NC_002937.3 268308 268871 D hypothetical protein 268308..268871 Desulfovibrio vulgaris str. Hildenborough 2796584 YP_009461.1 CDS DVU0236 NC_002937.3 269283 270425 R identified by match to protein family HMM PF00589; phage integrase site specific recombinase complement(269283..270425) Desulfovibrio vulgaris str. Hildenborough 2796585 YP_009462.1 CDS serS NC_002937.3 270666 271940 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(270666..271940) Desulfovibrio vulgaris str. Hildenborough 2795009 YP_009463.1 CDS DVU0238 NC_002937.3 272045 272434 R hypothetical protein complement(272045..272434) Desulfovibrio vulgaris str. Hildenborough 2795010 YP_009464.1 CDS DVU0239 NC_002937.3 272556 272792 R hypothetical protein complement(272556..272792) Desulfovibrio vulgaris str. Hildenborough 2795011 YP_009465.1 CDS DVU0240 NC_002937.3 272970 273467 R hypothetical protein complement(272970..273467) Desulfovibrio vulgaris str. Hildenborough 2795012 YP_009466.1 CDS DVU0241 NC_002937.3 273553 273930 D identified by similarity to SP:P10390; match to protein family HMM PF02579; hypothetical protein 273553..273930 Desulfovibrio vulgaris str. Hildenborough 2796722 YP_009467.1 CDS DVU0242 NC_002937.3 273943 274431 D identified by match to protein family HMM PF02810; SecC motif-containing protein 273943..274431 Desulfovibrio vulgaris str. Hildenborough 2796723 YP_009468.1 CDS DVU0243 NC_002937.3 275444 276112 D identified by similarity to OMNI:NTL01XC3841; lipoprotein 275444..276112 Desulfovibrio vulgaris str. Hildenborough 2796724 YP_009469.1 CDS DVU0244 NC_002937.3 276172 277029 R hypothetical protein complement(276172..277029) Desulfovibrio vulgaris str. Hildenborough 2796725 YP_009470.1 CDS DVU0245 NC_002937.3 277059 278168 R identified by match to protein family HMM PF00782; protein phosphatase complement(277059..278168) Desulfovibrio vulgaris str. Hildenborough 2794293 YP_009471.1 CDS DVU0246 NC_002937.3 278347 280581 R identified by similarity to SP:O29548; match to protein family HMM PF00391; match to protein family HMM PF01326; pyruvate phosphate dikinase PEP/pyruvate binding subunit complement(278347..280581) Desulfovibrio vulgaris str. Hildenborough 2794294 YP_009472.1 CDS DVU0247 NC_002937.3 280944 281303 R identified by match to protein family HMM PF00072; response regulator complement(280944..281303) Desulfovibrio vulgaris str. Hildenborough 2794295 YP_009473.1 CDS DVU0249 NC_002937.3 283424 284395 R identified by similarity to OMNI:NTL01NSC0089; hypothetical protein complement(283424..284395) Desulfovibrio vulgaris str. Hildenborough 2794297 YP_009474.1 CDS DVU0250 NC_002937.3 284703 285290 R hypothetical protein complement(284703..285290) Desulfovibrio vulgaris str. Hildenborough 2794298 YP_009475.1 CDS DVU0251 NC_002937.3 285367 286329 R identified by similarity to OMNI:AF2125; match to protein family HMM PF01925; hypothetical protein complement(285367..286329) Desulfovibrio vulgaris str. Hildenborough 2794205 YP_009476.1 CDS DVU0252 NC_002937.3 286665 286874 R hypothetical protein complement(286665..286874) Desulfovibrio vulgaris str. Hildenborough 2794206 YP_009477.1 CDS DVU0253 NC_002937.3 287022 289847 R identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase complement(287022..289847) Desulfovibrio vulgaris str. Hildenborough 2794207 YP_009478.1 CDS DVU0254 NC_002937.3 290212 290358 R hypothetical protein complement(290212..290358) Desulfovibrio vulgaris str. Hildenborough 2794501 YP_009479.1 CDS DVU0255 NC_002937.3 290357 290911 D hypothetical protein 290357..290911 Desulfovibrio vulgaris str. Hildenborough 2794502 YP_009480.1 CDS DVU0256 NC_002937.3 291021 294386 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase complement(291021..294386) Desulfovibrio vulgaris str. Hildenborough 2794503 YP_009481.1 CDS DVU0257 NC_002937.3 300822 301286 D identified by match to protein family HMM PF00583; acetyltransferase 300822..301286 Desulfovibrio vulgaris str. Hildenborough 2795004 YP_009482.1 CDS DVU0258 NC_002937.3 301447 303420 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator complement(301447..303420) Desulfovibrio vulgaris str. Hildenborough 2794100 YP_009483.1 CDS DVU0259 NC_002937.3 303681 304070 R identified by similarity to SP:P33394; match to protein family HMM PF00072; DNA-binding response regulator complement(303681..304070) Desulfovibrio vulgaris str. Hildenborough 2794101 YP_009484.1 CDS DVU0260 NC_002937.3 304088 304489 R identified by match to protein family HMM PF00072; response regulator complement(304088..304489) Desulfovibrio vulgaris str. Hildenborough 2794102 YP_009485.1 CDS DVU0261 NC_002937.3 304509 305435 R identified by match to protein family HMM PF00582; universal stress protein complement(304509..305435) Desulfovibrio vulgaris str. Hildenborough 2794103 YP_009486.1 CDS DVU0262 NC_002937.3 305439 305993 R hypothetical protein complement(305439..305993) Desulfovibrio vulgaris str. Hildenborough 2794104 YP_009487.1 CDS DVU0263 NC_002937.3 306015 306395 R identified by similarity to SP:P94690; acidic cytochrome c3 complement(306015..306395) Desulfovibrio vulgaris str. Hildenborough 2795005 YP_009488.1 CDS DVU0264 NC_002937.3 306421 307740 R identified by similarity to SP:P33393; match to protein family HMM PF00037; match to protein family HMM PF02754; ferredoxin, 4Fe-4S complement(306421..307740) Desulfovibrio vulgaris str. Hildenborough 2795006 YP_009489.1 CDS DVU0265 NC_002937.3 307760 308419 R hypothetical protein complement(307760..308419) Desulfovibrio vulgaris str. Hildenborough 2795007 YP_009490.2 CDS DVU0266 NC_002937.3 308428 309684 R hypothetical protein complement(308428..309684) Desulfovibrio vulgaris str. Hildenborough 2795008 YP_009491.1 CDS DVU0267 NC_002937.3 309644 309799 R hypothetical protein complement(309644..309799) Desulfovibrio vulgaris str. Hildenborough 2794321 YP_009492.1 CDS DVU0268 NC_002937.3 309898 310038 D hypothetical protein 309898..310038 Desulfovibrio vulgaris str. Hildenborough 2794322 YP_009493.1 CDS DVU0269 NC_002937.3 310226 310723 D identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family transcriptional regulator 310226..310723 Desulfovibrio vulgaris str. Hildenborough 2794323 YP_009494.1 CDS DVU0270 NC_002937.3 310963 313233 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 310963..313233 Desulfovibrio vulgaris str. Hildenborough 2794324 YP_009495.1 CDS DVU0271 NC_002937.3 313230 314720 D identified by match to protein family HMM PF00072; match to protein family HMM PF02518; response regulator 313230..314720 Desulfovibrio vulgaris str. Hildenborough 2794325 YP_009496.1 CDS DVU0272 NC_002937.3 315017 315112 D hypothetical protein 315017..315112 Desulfovibrio vulgaris str. Hildenborough 2794997 YP_009497.1 CDS DVU0273 NC_002937.3 315149 316666 D identified by similarity to GP:21899254; hypothetical protein 315149..316666 Desulfovibrio vulgaris str. Hildenborough 2794998 YP_009498.1 CDS DVU0274 NC_002937.3 316978 317349 R hypothetical protein complement(316978..317349) Desulfovibrio vulgaris str. Hildenborough 2794999 YP_009499.1 CDS DVU0275 NC_002937.3 317644 318339 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(317644..318339) Desulfovibrio vulgaris str. Hildenborough 2795000 YP_009500.1 CDS DVU0276 NC_002937.3 319404 319802 R identified by similarity to OMNI:NTL02ST1965; match to protein family HMM PF03625; hypothetical protein complement(319404..319802) Desulfovibrio vulgaris str. Hildenborough 2795067 YP_009501.1 CDS DVU0277 NC_002937.3 320357 321337 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 320357..321337 Desulfovibrio vulgaris str. Hildenborough 2794208 YP_009502.1 CDS DVU0278 NC_002937.3 321631 322053 R identified by similarity to OMNI:NTL01FN1550; match to protein family HMM PF00903; glyoxalase complement(321631..322053) Desulfovibrio vulgaris str. Hildenborough 2794209 YP_009503.1 CDS DVU0279 NC_002937.3 322378 324084 D identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; sulfate permease 322378..324084 Desulfovibrio vulgaris str. Hildenborough 2794210 YP_009504.1 CDS DVU0280 NC_002937.3 324397 325536 R identified by similarity to GP:47012; match to protein family HMM PF00534; glycosyl transferase family protein complement(324397..325536) Desulfovibrio vulgaris str. Hildenborough 2794211 YP_009505.1 CDS DVU0281 NC_002937.3 325641 327080 R identified by match to protein family HMM PF02397; exopolysaccharide biosynthesis protein complement(325641..327080) Desulfovibrio vulgaris str. Hildenborough 2796691 YP_009506.1 CDS mutY NC_002937.3 327314 328435 R identified by match to protein family HMM PF00293; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(327314..328435) Desulfovibrio vulgaris str. Hildenborough 2796692 YP_009507.1 CDS DVU0283 NC_002937.3 328770 330755 R identified by similarity to SP:P80880; match to protein family HMM PF00070; match to protein family HMM TIGR01292; AhpF family protein/thioredoxin reductase complement(328770..330755) Desulfovibrio vulgaris str. Hildenborough 2796693 YP_009508.2 CDS ppiB-1 NC_002937.3 330771 331277 D identified by similarity to SP:P23869; match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 330771..331277 Desulfovibrio vulgaris str. Hildenborough 2796694 YP_009509.1 CDS hisH NC_002937.3 331465 332106 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 331465..332106 Desulfovibrio vulgaris str. Hildenborough 2796695 YP_009510.1 CDS hisF NC_002937.3 332096 332875 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 332096..332875 Desulfovibrio vulgaris str. Hildenborough 2793492 YP_003858603.1 CDS DVU4017 NC_002937.3 333042 333728 D hypothetical protein 333042..333728 Desulfovibrio vulgaris str. Hildenborough 9714862 YP_009513.2 CDS moaC NC_002937.3 333951 334577 R identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C complement(333951..334577) Desulfovibrio vulgaris str. Hildenborough 2793495 YP_009514.1 CDS DVU0290 NC_002937.3 334593 335201 R lipoprotein complement(334593..335201) Desulfovibrio vulgaris str. Hildenborough 2793496 YP_009515.1 CDS DVU0291 NC_002937.3 335226 336290 R identified by similarity to SP:P16676; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(335226..336290) Desulfovibrio vulgaris str. Hildenborough 2795946 YP_009516.1 CDS DVU0292 NC_002937.3 336275 337381 R hypothetical protein complement(336275..337381) Desulfovibrio vulgaris str. Hildenborough 2795947 YP_009517.1 CDS DVU0293 NC_002937.3 337767 338108 D dksA/traR C4-type zinc finger family protein 337767..338108 Desulfovibrio vulgaris str. Hildenborough 2795948 YP_009518.1 CDS DVU0294 NC_002937.3 338182 340326 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 338182..340326 Desulfovibrio vulgaris str. Hildenborough 2795949 YP_009519.1 CDS DVU0295 NC_002937.3 340483 341832 D amine oxidase, flavin-containing 340483..341832 Desulfovibrio vulgaris str. Hildenborough 2795950 YP_009520.1 CDS DVU0296 NC_002937.3 341931 343001 D identified by match to protein family HMM PF00557; M24 family peptidase 341931..343001 Desulfovibrio vulgaris str. Hildenborough 2795180 YP_009521.1 CDS DVU0297 NC_002937.3 343489 343836 D hypothetical protein 343489..343836 Desulfovibrio vulgaris str. Hildenborough 2795181 YP_009522.1 CDS DVU0298 NC_002937.3 344447 345232 D hypothetical protein 344447..345232 Desulfovibrio vulgaris str. Hildenborough 2795182 YP_003858604.1 CDS DVU4004 NC_002937.3 345305 345463 R hypothetical protein complement(345305..345463) Desulfovibrio vulgaris str. Hildenborough 9714861 YP_009523.1 CDS DVU0299 NC_002937.3 345642 347687 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(345642..347687) Desulfovibrio vulgaris str. Hildenborough 2795183 YP_009524.1 CDS DVU0300 NC_002937.3 347569 348306 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(347569..348306) Desulfovibrio vulgaris str. Hildenborough 2795184 YP_009525.1 CDS DVU0301 NC_002937.3 348472 348621 R hypothetical protein complement(348472..348621) Desulfovibrio vulgaris str. Hildenborough 2794557 YP_009526.1 CDS DVU0302 NC_002937.3 348841 349308 R identified by similarity to GP:3493637; chemotaxis protein CheX complement(348841..349308) Desulfovibrio vulgaris str. Hildenborough 2794558 YP_009527.1 CDS DVU0303 NC_002937.3 349656 349973 R hypothetical protein complement(349656..349973) Desulfovibrio vulgaris str. Hildenborough 2794559 YP_009528.1 CDS DVU0304 NC_002937.3 350004 350285 R hypothetical protein complement(350004..350285) Desulfovibrio vulgaris str. Hildenborough 2794560 YP_009529.1 CDS DVU0305 NC_002937.3 350415 350609 R identified by similarity to SP:P10624; match to protein family HMM PF00037; ferredoxin II complement(350415..350609) Desulfovibrio vulgaris str. Hildenborough 2794561 YP_009530.1 CDS DVU0306 NC_002937.3 350703 351320 D hypothetical protein 350703..351320 Desulfovibrio vulgaris str. Hildenborough 2794805 YP_009531.1 CDS DVU0307 NC_002937.3 351441 352937 D identified by match to protein family HMM PF00460; flagella basal body rod domain-containing protein 351441..352937 Desulfovibrio vulgaris str. Hildenborough 2794806 YP_009532.1 CDS DVU0308 NC_002937.3 353329 353763 R identified by similarity to OMNI:NTL01AT1594; hypothetical protein complement(353329..353763) Desulfovibrio vulgaris str. Hildenborough 2794807 YP_009533.1 CDS DVU0309 NC_002937.3 353856 354776 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 353856..354776 Desulfovibrio vulgaris str. Hildenborough 2794808 YP_009534.1 CDS fliI NC_002937.3 354912 356225 R identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026; flagellum-specific ATP synthase FliI complement(354912..356225) Desulfovibrio vulgaris str. Hildenborough 2794809 YP_009535.1 CDS DVU0311 NC_002937.3 356222 356974 R identified by similarity to SP:P31068; flagellar assembly protein FliH complement(356222..356974) Desulfovibrio vulgaris str. Hildenborough 2796755 YP_009536.1 CDS fliG NC_002937.3 356961 357977 R identified by similarity to SP:P23448; match to protein family HMM PF01706; match to protein family HMM TIGR00207; flagellar motor switch protein FliG complement(356961..357977) Desulfovibrio vulgaris str. Hildenborough 2796756 YP_009537.1 CDS fliF NC_002937.3 357946 359562 R identified by similarity to SP:P25798; match to protein family HMM PF01514; match to protein family HMM TIGR00206; flagellar M-ring protein FliF complement(357946..359562) Desulfovibrio vulgaris str. Hildenborough 2796757 YP_009538.1 CDS fliE NC_002937.3 359614 359949 R identified by similarity to SP:P24502; match to protein family HMM PF02049; match to protein family HMM TIGR00205; flagellar basal body component FliE complement(359614..359949) Desulfovibrio vulgaris str. Hildenborough 2796758 YP_009539.1 CDS flgC NC_002937.3 359964 360401 R identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; flagellar basal-body rod protein FlgC complement(359964..360401) Desulfovibrio vulgaris str. Hildenborough 2796759 YP_009540.1 CDS flgB NC_002937.3 360401 360811 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB complement(360401..360811) Desulfovibrio vulgaris str. Hildenborough 2794174 YP_009541.1 CDS DVU0317 NC_002937.3 361286 361423 R hypothetical protein complement(361286..361423) Desulfovibrio vulgaris str. Hildenborough 2794175 YP_009542.1 CDS DVU0318 NC_002937.3 361450 362013 D identified by match to protein family HMM PF00515; hypothetical protein 361450..362013 Desulfovibrio vulgaris str. Hildenborough 2794176 YP_009543.1 CDS DVU0319 NC_002937.3 362485 363510 R identified by similarity to GP:20560072; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase complement(362485..363510) Desulfovibrio vulgaris str. Hildenborough 2794177 YP_009544.1 CDS DVU0320 NC_002937.3 363642 363902 R identified by similarity to GP:295166; hypothetical protein complement(363642..363902) Desulfovibrio vulgaris str. Hildenborough 2794443 YP_009545.1 CDS DVU0321 NC_002937.3 364219 365007 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 364219..365007 Desulfovibrio vulgaris str. Hildenborough 2794444 YP_009546.1 CDS eno NC_002937.3 365096 366409 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 365096..366409 Desulfovibrio vulgaris str. Hildenborough 2794445 YP_009547.1 CDS folD NC_002937.3 366622 367482 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 366622..367482 Desulfovibrio vulgaris str. Hildenborough 2794446 YP_009548.1 CDS DVU0324 NC_002937.3 367541 367639 D hypothetical protein 367541..367639 Desulfovibrio vulgaris str. Hildenborough 2794326 YP_009549.1 CDS hypD NC_002937.3 367932 369029 D identified by similarity to SP:P24192; match to protein family HMM PF01924; hydrogenase expression/formation protein HypD 367932..369029 Desulfovibrio vulgaris str. Hildenborough 2794327 YP_009550.1 CDS hypE NC_002937.3 369036 370061 D identified by similarity to SP:P42034; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 369036..370061 Desulfovibrio vulgaris str. Hildenborough 2794328 YP_009551.1 CDS DVU0327 NC_002937.3 370217 371482 R identified by match to protein family HMM PF02397; exopolysaccharide biosynthesis protein complement(370217..371482) Desulfovibrio vulgaris str. Hildenborough 2794329 YP_009552.1 CDS DVU0328 NC_002937.3 371560 372705 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(371560..372705) Desulfovibrio vulgaris str. Hildenborough 2794330 YP_009553.1 CDS DVU0329 NC_002937.3 372898 373017 D hypothetical protein 372898..373017 Desulfovibrio vulgaris str. Hildenborough 2794331 YP_009554.1 CDS DVU0330 NC_002937.3 372996 374234 R identified by match to protein family HMM PF00072; match to protein family HMM PF01966; response regulator complement(372996..374234) Desulfovibrio vulgaris str. Hildenborough 2794497 YP_009555.1 CDS DVU0331 NC_002937.3 374234 377155 R identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(374234..377155) Desulfovibrio vulgaris str. Hildenborough 2794498 YP_009556.1 CDS DVU0332 NC_002937.3 377194 377352 R hypothetical protein complement(377194..377352) Desulfovibrio vulgaris str. Hildenborough 2794499 YP_009557.1 CDS DVU0333 NC_002937.3 377367 378023 D hypothetical protein 377367..378023 Desulfovibrio vulgaris str. Hildenborough 2794500 YP_009558.1 CDS DVU0334 NC_002937.3 377980 378891 D identified by similarity to SP:P07862; match to protein family HMM PF01820; match to protein family HMM TIGR01205; D-alanine--D-alanine ligase 377980..378891 Desulfovibrio vulgaris str. Hildenborough 2794750 YP_009559.1 CDS DVU0335 NC_002937.3 378977 380569 D identified by similarity to GP:17221411; 3-deoxy-D-manno-octulosonic-acid transferase 378977..380569 Desulfovibrio vulgaris str. Hildenborough 2794751 YP_009560.1 CDS DVU0336 NC_002937.3 380770 382110 R identified by match to protein family HMM PF01041; aminotransferase complement(380770..382110) Desulfovibrio vulgaris str. Hildenborough 2794752 YP_009561.1 CDS DVU0337 NC_002937.3 382107 384077 R hypothetical protein complement(382107..384077) Desulfovibrio vulgaris str. Hildenborough 2794753 YP_009562.1 CDS DVU0338 NC_002937.3 384097 384738 R identified by match to protein family HMM PF00702; HAD superfamily hydrolase complement(384097..384738) Desulfovibrio vulgaris str. Hildenborough 2794754 YP_009563.1 CDS DVU0339 NC_002937.3 384768 385673 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase complement(384768..385673) Desulfovibrio vulgaris str. Hildenborough 2796768 YP_009564.1 CDS DVU0340 NC_002937.3 385816 386409 R identified by similarity to SP:P26839; match to protein family HMM PF00132; acetyltransferase complement(385816..386409) Desulfovibrio vulgaris str. Hildenborough 2796769 YP_009565.1 CDS DVU0341 NC_002937.3 386419 387189 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(386419..387189) Desulfovibrio vulgaris str. Hildenborough 2796770 YP_009566.1 CDS DVU0342 NC_002937.3 387502 388416 R identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase complement(387502..388416) Desulfovibrio vulgaris str. Hildenborough 2796771 YP_009567.1 CDS DVU0343 NC_002937.3 388419 389201 R identified by similarity to SP:P23522; match to protein family HMM PF03328; HPCH/HPAI aldolase complement(388419..389201) Desulfovibrio vulgaris str. Hildenborough 2796772 YP_009568.1 CDS DVU0344 NC_002937.3 389669 391597 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(389669..391597) Desulfovibrio vulgaris str. Hildenborough 2794784 YP_009569.1 CDS DVU0345 NC_002937.3 391581 391781 R hypothetical protein complement(391581..391781) Desulfovibrio vulgaris str. Hildenborough 2794785 YP_009570.1 CDS DVU0346 NC_002937.3 391830 393368 R hypothetical protein complement(391830..393368) Desulfovibrio vulgaris str. Hildenborough 2794786 YP_009571.1 CDS DVU0347 NC_002937.3 393664 394335 R identified by match to protein family HMM PF00132; hexapaptide repeat-containing transferase complement(393664..394335) Desulfovibrio vulgaris str. Hildenborough 2794787 YP_009572.1 CDS DVU0348 NC_002937.3 394354 396078 R hypothetical protein complement(394354..396078) Desulfovibrio vulgaris str. Hildenborough 2794788 YP_009573.1 CDS DVU0349 NC_002937.3 396098 397156 R identified by match to protein family HMM PF01354; match to protein family HMM PF03102; NeuB family protein complement(396098..397156) Desulfovibrio vulgaris str. Hildenborough 2794676 YP_009574.1 CDS spsF NC_002937.3 397193 397876 R identified by match to protein family HMM PF02348; spore coat polysaccharide biosynthesis protein spsF complement(397193..397876) Desulfovibrio vulgaris str. Hildenborough 2794677 YP_009575.1 CDS DVU0351 NC_002937.3 397873 399507 R identified by similarity to SP:P39627; similarity to GP:4741793; cytidine 5'monophosphate N-acetylneuraminic acid synthetase /polysaccharide biosynthesis protein complement(397873..399507) Desulfovibrio vulgaris str. Hildenborough 2794678 YP_009576.1 CDS DVU0352 NC_002937.3 399515 400696 R identified by match to protein family HMM PF01041; aminotransferase complement(399515..400696) Desulfovibrio vulgaris str. Hildenborough 2794679 YP_009577.1 CDS DVU0353 NC_002937.3 400830 401903 R identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase complement(400830..401903) Desulfovibrio vulgaris str. Hildenborough 2794680 YP_009578.1 CDS DVU0354 NC_002937.3 402346 403404 D identified by similarity to OMNI:NTL01AT2375; hypothetical protein 402346..403404 Desulfovibrio vulgaris str. Hildenborough 2794755 YP_009579.1 CDS DVU0355 NC_002937.3 403528 405351 R identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein complement(403528..405351) Desulfovibrio vulgaris str. Hildenborough 2794756 YP_009580.1 CDS tag NC_002937.3 405472 406047 D identified by similarity to SP:P05100; match to protein family HMM PF03352; DNA-3-methyladenine glycosylase I 405472..406047 Desulfovibrio vulgaris str. Hildenborough 2794757 YP_009581.1 CDS DVU0357 NC_002937.3 406059 406976 D identified by similarity to OMNI:NTL02ML5790; hypothetical protein 406059..406976 Desulfovibrio vulgaris str. Hildenborough 2794758 YP_009582.1 CDS DVU0358 NC_002937.3 407342 408085 D hypothetical protein 407342..408085 Desulfovibrio vulgaris str. Hildenborough 2793497 YP_009583.1 CDS DVU0359 NC_002937.3 408368 408694 D HesB-like domain-containing protein 408368..408694 Desulfovibrio vulgaris str. Hildenborough 2793498 YP_009584.1 CDS ilvB-1 NC_002937.3 409391 411082 D catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit 409391..411082 Desulfovibrio vulgaris str. Hildenborough 2793499 YP_009585.1 CDS DVU0361 NC_002937.3 411087 411410 D with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit 411087..411410 Desulfovibrio vulgaris str. Hildenborough 2793500 YP_009586.1 CDS DVU0362 NC_002937.3 411461 412240 R identified by similarity to OMNI:NTL01AA01111; hypothetical protein complement(411461..412240) Desulfovibrio vulgaris str. Hildenborough 2793501 YP_009587.2 CDS pabB NC_002937.3 412237 413337 R identified by match to protein family HMM PF00425; para-aminobenzoate synthase, component I complement(412237..413337) Desulfovibrio vulgaris str. Hildenborough 2793561 YP_009588.1 CDS pabA NC_002937.3 413780 414334 R identified by similarity to SP:P28819; match to protein family HMM PF00117; para-aminobenzoate/anthranilate synthase glutamine amidotransferase complement(413780..414334) Desulfovibrio vulgaris str. Hildenborough 2793562 YP_009589.1 CDS DVU0365 NC_002937.3 414331 415086 R identified by similarity to OMNI:NTL01RS1629; match to protein family HMM PF02578; hypothetical protein complement(414331..415086) Desulfovibrio vulgaris str. Hildenborough 2793563 YP_009590.1 CDS DVU0366 NC_002937.3 415077 415928 R identified by match to protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase complement(415077..415928) Desulfovibrio vulgaris str. Hildenborough 2793564 YP_009591.1 CDS DVU0367 NC_002937.3 416195 416929 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 416195..416929 Desulfovibrio vulgaris str. Hildenborough 2793565 YP_009592.1 CDS DVU0368 NC_002937.3 417842 417946 D hypothetical protein 417842..417946 Desulfovibrio vulgaris str. Hildenborough 2794440 YP_009593.1 CDS DVU0369 NC_002937.3 418078 418176 D hypothetical protein 418078..418176 Desulfovibrio vulgaris str. Hildenborough 2794441 YP_009594.1 CDS DVU0370 NC_002937.3 418268 418411 R hypothetical protein complement(418268..418411) Desulfovibrio vulgaris str. Hildenborough 2794442 YP_009595.1 CDS DVU0371 NC_002937.3 418412 419836 D identified by similarity to GP:21899254; hypothetical protein 418412..419836 Desulfovibrio vulgaris str. Hildenborough 2796717 YP_009596.1 CDS DVU0372 NC_002937.3 420136 420828 R hypothetical protein complement(420136..420828) Desulfovibrio vulgaris str. Hildenborough 2796718 YP_009597.1 CDS DVU0373 NC_002937.3 420886 423198 R identified by similarity to OMNI:NTL01PA0352; match to protein family HMM PF02629; CoA-binding domain-containing protein complement(420886..423198) Desulfovibrio vulgaris str. Hildenborough 2796719 YP_009598.1 CDS DVU0374 NC_002937.3 423403 425901 R identified by match to protein family HMM PF01558; pyruvate ferredoxin/flavodoxin oxidoreductase complement(423403..425901) Desulfovibrio vulgaris str. Hildenborough 2796720 YP_009599.1 CDS DVU0375 NC_002937.3 425986 427215 R identified by match to protein family HMM PF00208; Glu/Leu/Phe/Val dehydrogenase complement(425986..427215) Desulfovibrio vulgaris str. Hildenborough 2796721 YP_009600.1 CDS DVU0376 NC_002937.3 427237 427503 R hypothetical protein complement(427237..427503) Desulfovibrio vulgaris str. Hildenborough 2794634 YP_009601.1 CDS trxB-1 NC_002937.3 427507 428424 R identified by similarity to SP:P50971; match to protein family HMM PF00070; thioredoxin reductase complement(427507..428424) Desulfovibrio vulgaris str. Hildenborough 2794635 YP_009602.1 CDS DVU0378 NC_002937.3 428443 428757 R identified by similarity to SP:P80579; thioredoxin complement(428443..428757) Desulfovibrio vulgaris str. Hildenborough 2794636 YP_009603.1 CDS DVU0379 NC_002937.3 428780 429457 R identified by match to protein family HMM PF00027; transcriptional regulator complement(428780..429457) Desulfovibrio vulgaris str. Hildenborough 2794637 YP_009604.1 CDS DVU0380 NC_002937.3 429501 431063 R identified by match to protein family HMM PF00884; sulfatase complement(429501..431063) Desulfovibrio vulgaris str. Hildenborough 2794638 YP_009605.1 CDS nhaC-1 NC_002937.3 431111 432502 R identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC complement(431111..432502) Desulfovibrio vulgaris str. Hildenborough 2796739 YP_009606.1 CDS DVU0382 NC_002937.3 432584 432883 D hypothetical protein 432584..432883 Desulfovibrio vulgaris str. Hildenborough 2796740 YP_009607.1 CDS DVU0383 NC_002937.3 433064 433453 D hypothetical protein 433064..433453 Desulfovibrio vulgaris str. Hildenborough 2796741 YP_009608.1 CDS flr NC_002937.3 433812 434384 R identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613; flavoredoxin complement(433812..434384) Desulfovibrio vulgaris str. Hildenborough 2796742 YP_009609.1 CDS DVU0385 NC_002937.3 434408 434530 D hypothetical protein 434408..434530 Desulfovibrio vulgaris str. Hildenborough 2796743 YP_009610.1 CDS DVU0386 NC_002937.3 434628 435377 D identified by match to protein family HMM PF00497; amino acid ABC transporter periplasmic amino acid-binding protein 434628..435377 Desulfovibrio vulgaris str. Hildenborough 2796744 YP_009611.1 CDS DVU0387 NC_002937.3 435519 436196 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 435519..436196 Desulfovibrio vulgaris str. Hildenborough 2795061 YP_009612.1 CDS DVU0388 NC_002937.3 436205 436972 D identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 436205..436972 Desulfovibrio vulgaris str. Hildenborough 2795062 YP_009613.1 CDS DVU0389 NC_002937.3 436972 437646 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine amino acid ABC transporter permease 436972..437646 Desulfovibrio vulgaris str. Hildenborough 2795063 YP_009614.1 CDS DVU0390 NC_002937.3 437672 439054 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 437672..439054 Desulfovibrio vulgaris str. Hildenborough 2795064 YP_009615.1 CDS DVU0391 NC_002937.3 439115 440056 R hypothetical protein complement(439115..440056) Desulfovibrio vulgaris str. Hildenborough 2794247 YP_009616.1 CDS DVU0392 NC_002937.3 440311 441510 D identified by similarity to GP:14278621; match to protein family HMM PF00155; aromatic aminotransferase 440311..441510 Desulfovibrio vulgaris str. Hildenborough 2794248 YP_009617.2 CDS ung NC_002937.3 441512 442501 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 441512..442501 Desulfovibrio vulgaris str. Hildenborough 2794249 YP_009618.1 CDS DVU0394 NC_002937.3 442741 443763 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(442741..443763) Desulfovibrio vulgaris str. Hildenborough 2794250 YP_009619.1 CDS DVU0395 NC_002937.3 443991 444410 D identified by similarity to SP:O07513; match to protein family HMM PF01230; HIT family protein 443991..444410 Desulfovibrio vulgaris str. Hildenborough 2794251 YP_009620.1 CDS hup-1 NC_002937.3 444438 444725 D identified by similarity to SP:P05514; match to protein family HMM PF00216; DNA-binding protein HU 444438..444725 Desulfovibrio vulgaris str. Hildenborough 2796538 YP_009621.1 CDS DVU0397 NC_002937.3 445073 445804 R identified by similarity to SP:P10100; match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A complement(445073..445804) Desulfovibrio vulgaris str. Hildenborough 2796539 YP_009622.1 CDS DVU0398 NC_002937.3 445885 447711 R identified by match to protein family HMM PF00682; HMGL-like domain-containing protein complement(445885..447711) Desulfovibrio vulgaris str. Hildenborough 2796540 YP_009623.1 CDS DVU0399 NC_002937.3 447708 448496 R hypothetical protein complement(447708..448496) Desulfovibrio vulgaris str. Hildenborough 2796541 YP_009624.1 CDS DVU0400 NC_002937.3 448581 449132 R hypothetical protein complement(448581..449132) Desulfovibrio vulgaris str. Hildenborough 2796542 YP_009625.1 CDS DVU0401 NC_002937.3 449150 449701 R hypothetical protein complement(449150..449701) Desulfovibrio vulgaris str. Hildenborough 2796543 YP_009626.1 CDS dsvA NC_002937.3 449888 451201 D identified by similarity to GP:902747; match to protein family HMM PF01077; match to protein family HMM TIGR02064; dissimilatory sulfite reductase subunit alpha 449888..451201 Desulfovibrio vulgaris str. Hildenborough 2796152 YP_009627.1 CDS dvsB NC_002937.3 451220 452365 D identified by similarity to GP:902748; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02066; dissimilatory sulfite reductase subunit beta 451220..452365 Desulfovibrio vulgaris str. Hildenborough 2796153 YP_009628.1 CDS DVU0404 NC_002937.3 452427 452663 D identified by similarity to SP:Q46582; dissimilatory sulfite reductase B 452427..452663 Desulfovibrio vulgaris str. Hildenborough 2796154 YP_009629.1 CDS cobB-1 NC_002937.3 452779 454185 D identified by similarity to SP:P29946; match to protein family HMM PF01656; match to protein family HMM TIGR00379; cobyrinic acid a,c-diamide synthase 452779..454185 Desulfovibrio vulgaris str. Hildenborough 2796155 YP_009630.1 CDS DVU0406 NC_002937.3 454663 455601 R identified by match to protein family HMM PF00892; hypothetical protein complement(454663..455601) Desulfovibrio vulgaris str. Hildenborough 2796156 YP_009631.1 CDS DVU0407 NC_002937.3 455770 456414 D identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A family protein 455770..456414 Desulfovibrio vulgaris str. Hildenborough 2793708 YP_009632.1 CDS DVU0408 NC_002937.3 456505 458652 D identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; response regulator/sensory box/GGDEF domain/EAL domain-containing protein 456505..458652 Desulfovibrio vulgaris str. Hildenborough 2793709 YP_009633.1 CDS DVU0409 NC_002937.3 458875 459225 R hypothetical protein complement(458875..459225) Desulfovibrio vulgaris str. Hildenborough 2793710 YP_009634.1 CDS DVU0410 NC_002937.3 459231 459836 R hypothetical protein complement(459231..459836) Desulfovibrio vulgaris str. Hildenborough 2793711 YP_009635.1 CDS DVU0411 NC_002937.3 459998 461671 R identified by match to protein family HMM PF01075; heptosyltransferase complement(459998..461671) Desulfovibrio vulgaris str. Hildenborough 2793712 YP_009636.1 CDS DVU0412 NC_002937.3 461688 462353 R identified by similarity to GP:3288678; match to protein family HMM PF02080; match to protein family HMM PF02254; potassium uptake protein TrkA complement(461688..462353) Desulfovibrio vulgaris str. Hildenborough 2795175 YP_009637.1 CDS DVU0413 NC_002937.3 462411 463748 R identified by similarity to GP:3395637; match to protein family HMM PF02386; TrkH family potassium uptake protein complement(462411..463748) Desulfovibrio vulgaris str. Hildenborough 2795176 YP_009638.1 CDS DVU0414 NC_002937.3 463867 465186 D identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme-like protein 463867..465186 Desulfovibrio vulgaris str. Hildenborough 2795177 YP_009639.1 CDS pepA NC_002937.3 465244 466767 D identified by similarity to SP:P11648; match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase 465244..466767 Desulfovibrio vulgaris str. Hildenborough 2795178 YP_009640.1 CDS DVU0416 NC_002937.3 467022 468140 R identified by similarity to GP:1119215; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(467022..468140) Desulfovibrio vulgaris str. Hildenborough 2795179 YP_009641.1 CDS speA NC_002937.3 468657 470636 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 468657..470636 Desulfovibrio vulgaris str. Hildenborough 2796700 YP_009642.1 CDS lys1 NC_002937.3 470885 472075 D identified by match to protein family HMM PF03435; saccharopine dehydrogenase 470885..472075 Desulfovibrio vulgaris str. Hildenborough 2796701 YP_009643.1 CDS nspC NC_002937.3 472353 473525 D identified by similarity to GP:498170; match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase 472353..473525 Desulfovibrio vulgaris str. Hildenborough 2796702 YP_009644.1 CDS DVU0420 NC_002937.3 473780 473956 D hypothetical protein 473780..473956 Desulfovibrio vulgaris str. Hildenborough 2796703 YP_009645.1 CDS DVU0421 NC_002937.3 473967 474839 D identified by similarity to OMNI:NTL01SS00132; match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 473967..474839 Desulfovibrio vulgaris str. Hildenborough 2796704 YP_009646.1 CDS DVU0422 NC_002937.3 475147 478365 R identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein complement(475147..478365) Desulfovibrio vulgaris str. Hildenborough 2795215 YP_009647.1 CDS DVU0423 NC_002937.3 478518 478943 D identified by match to protein family HMM PF00582; universal stress protein 478518..478943 Desulfovibrio vulgaris str. Hildenborough 2795216 YP_009648.1 CDS cls NC_002937.3 479096 480541 D identified by similarity to SP:O66043; match to protein family HMM PF00614; cardiolipin synthetase 479096..480541 Desulfovibrio vulgaris str. Hildenborough 2795217 YP_009649.1 CDS DVU0425 NC_002937.3 480810 481616 D hypothetical protein 480810..481616 Desulfovibrio vulgaris str. Hildenborough 2795218 YP_009650.1 CDS DVU0426 NC_002937.3 481824 483176 R identified by similarity to SP:P14285; match to protein family HMM PF02417; chromate transport family protein complement(481824..483176) Desulfovibrio vulgaris str. Hildenborough 2795219 YP_009651.1 CDS DVU0427 NC_002937.3 483204 483401 D hypothetical protein 483204..483401 Desulfovibrio vulgaris str. Hildenborough 2795220 YP_009652.1 CDS DVU0428 NC_002937.3 483654 483974 D identified by similarity to OMNI:NTL01SM02466; match to protein family HMM PF03992; hypothetical protein 483654..483974 Desulfovibrio vulgaris str. Hildenborough 2794671 YP_009653.1 CDS DVU0429 NC_002937.3 484368 484769 R identified by similarity to GP:3005972; match to protein family HMM PF00037; ech hydrogenase subunit EchF complement(484368..484769) Desulfovibrio vulgaris str. Hildenborough 2794672 YP_009654.1 CDS DVU0430 NC_002937.3 484788 485864 R identified by similarity to GP:3005971; match to protein family HMM PF00346; ech hydrogenase subunit EchE complement(484788..485864) Desulfovibrio vulgaris str. Hildenborough 2794673 YP_009655.1 CDS DVU0431 NC_002937.3 485877 486269 R identified by similarity to GP:3005970; ech hydrogenase subunit EchD complement(485877..486269) Desulfovibrio vulgaris str. Hildenborough 2794674 YP_009656.1 CDS DVU0432 NC_002937.3 486305 486778 R identified by similarity to GP:3005969; ech hydrogenase subunit EchC complement(486305..486778) Desulfovibrio vulgaris str. Hildenborough 2794675 YP_009657.1 CDS DVU0433 NC_002937.3 486791 487639 R identified by similarity to GP:3005968; match to protein family HMM PF00146; ech hydrogenase subunit EchB complement(486791..487639) Desulfovibrio vulgaris str. Hildenborough 2794928 YP_009658.1 CDS DVU0434 NC_002937.3 487639 489585 R identified by similarity to GP:3005967; match to protein family HMM PF00361; ech hydrogenase subunit EchA complement(487639..489585) Desulfovibrio vulgaris str. Hildenborough 2794929 YP_009659.1 CDS DVU0435 NC_002937.3 489742 489840 R hypothetical protein complement(489742..489840) Desulfovibrio vulgaris str. Hildenborough 2794930 YP_009660.1 CDS DVU0436 NC_002937.3 489845 490600 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 489845..490600 Desulfovibrio vulgaris str. Hildenborough 2794931 YP_009661.1 CDS DVU0437 NC_002937.3 490755 492215 D identified by similarity to SP:P76397; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 490755..492215 Desulfovibrio vulgaris str. Hildenborough 2794932 YP_009662.1 CDS DVU0438 NC_002937.3 492212 495337 D identified by similarity to GP:14025566; match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 492212..495337 Desulfovibrio vulgaris str. Hildenborough 2794933 YP_009663.1 CDS DVU0439 NC_002937.3 495372 495662 D identified by match to protein family HMM PF03795; YCII-related domain-containing protein 495372..495662 Desulfovibrio vulgaris str. Hildenborough 2794934 YP_009664.1 CDS DVU0440 NC_002937.3 496131 497462 D identified by similarity to OMNI:NTL01TT0248; hypothetical protein 496131..497462 Desulfovibrio vulgaris str. Hildenborough 2796509 YP_009665.1 CDS ade NC_002937.3 497613 499340 R identified by similarity to SP:P39761; match to protein family HMM PF01979; match to protein family HMM TIGR01178; adenine deaminase complement(497613..499340) Desulfovibrio vulgaris str. Hildenborough 2796510 YP_009666.1 CDS DVU0442 NC_002937.3 499787 500983 R identified by match to protein family HMM PF02562; phoH-like protein complement(499787..500983) Desulfovibrio vulgaris str. Hildenborough 2796511 YP_009667.1 CDS DVU0443 NC_002937.3 501196 501930 R identified by match to protein family HMM PF00929; exonulcease complement(501196..501930) Desulfovibrio vulgaris str. Hildenborough 2796512 YP_009668.1 CDS DVU0444 NC_002937.3 501938 504160 R identified by match to protein family HMM PF00571; hypothetical protein complement(501938..504160) Desulfovibrio vulgaris str. Hildenborough 2796513 YP_009669.1 CDS DVU0445 NC_002937.3 504169 505893 R identified by match to protein family HMM PF00571; hypothetical protein complement(504169..505893) Desulfovibrio vulgaris str. Hildenborough 2796648 YP_009670.1 CDS DVU0446 NC_002937.3 506042 507589 R identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium/solute symporter family protein complement(506042..507589) Desulfovibrio vulgaris str. Hildenborough 2796649 YP_009671.1 CDS DVU0447 NC_002937.3 507582 507899 R identified by similarity to SP:P32706; match to protein family HMM PF04341; hypothetical protein complement(507582..507899) Desulfovibrio vulgaris str. Hildenborough 2796650 YP_009672.1 CDS gmd NC_002937.3 508293 509438 D identified by similarity to SP:P32054; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 508293..509438 Desulfovibrio vulgaris str. Hildenborough 2796651 YP_009673.1 CDS DVU0449 NC_002937.3 509426 513967 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229; sensor/response regulator complement(509426..513967) Desulfovibrio vulgaris str. Hildenborough 2796652 YP_009674.1 CDS ribF NC_002937.3 514816 515760 D identified by similarity to SP:P08391; match to protein family HMM PF01687; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 514816..515760 Desulfovibrio vulgaris str. Hildenborough 2793373 YP_009675.1 CDS DVU0451 NC_002937.3 515765 517576 D identified by match to protein family HMM PF00571; match to protein family HMM PF00654; chloride channel family protein 515765..517576 Desulfovibrio vulgaris str. Hildenborough 2793374 YP_009676.1 CDS DVU0452 NC_002937.3 517716 519395 R hypothetical protein complement(517716..519395) Desulfovibrio vulgaris str. Hildenborough 2793375 YP_009677.2 CDS DVU0453 NC_002937.3 519369 522752 D identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 519369..522752 Desulfovibrio vulgaris str. Hildenborough 2793376 YP_009678.1 CDS DVU0454 NC_002937.3 522863 523111 R hypothetical protein complement(522863..523111) Desulfovibrio vulgaris str. Hildenborough 2794974 YP_009679.1 CDS DVU0455 NC_002937.3 523161 523928 D hypothetical protein 523161..523928 Desulfovibrio vulgaris str. Hildenborough 2794975 YP_009680.1 CDS DVU0456 NC_002937.3 523950 524957 D DHH family protein 523950..524957 Desulfovibrio vulgaris str. Hildenborough 2794976 YP_009681.1 CDS DVU0457 NC_002937.3 525113 526363 R identified by match to protein family HMM PF00563; EAL domain-containing protein complement(525113..526363) Desulfovibrio vulgaris str. Hildenborough 2794977 YP_009682.1 CDS DVU0458 NC_002937.3 527146 527313 R hypothetical protein complement(527146..527313) Desulfovibrio vulgaris str. Hildenborough 2794978 YP_009683.1 CDS DVU0459 NC_002937.3 527355 527456 D hypothetical protein 527355..527456 Desulfovibrio vulgaris str. Hildenborough 2794979 YP_009684.1 CDS DVU0460 NC_002937.3 527671 528471 D catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; fructose-bisphosphate aldolase 527671..528471 Desulfovibrio vulgaris str. Hildenborough 2794473 YP_009685.1 CDS DVU0461 NC_002937.3 528480 529451 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate; 3-dehydroquinate synthase 528480..529451 Desulfovibrio vulgaris str. Hildenborough 2794474 YP_009686.1 CDS DVU0462 NC_002937.3 529454 530629 D identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase 529454..530629 Desulfovibrio vulgaris str. Hildenborough 2794475 YP_009687.1 CDS aroA NC_002937.3 530629 531948 D identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356; 3-phosphoshikimate 1-carboxyvinyltransferase 530629..531948 Desulfovibrio vulgaris str. Hildenborough 2794476 YP_009688.1 CDS DVU0464 NC_002937.3 531954 532721 D identified by match to protein family HMM PF02153; prephenate dehydrogenase 531954..532721 Desulfovibrio vulgaris str. Hildenborough 2794477 YP_009689.1 CDS DVU0465 NC_002937.3 532853 534451 D identified by similarity to SP:O66849; match to protein family HMM PF00425; match to protein family HMM PF04715; anthranilate synthase, component I 532853..534451 Desulfovibrio vulgaris str. Hildenborough 2794478 YP_009690.1 CDS trpG NC_002937.3 534432 535061 D identified by similarity to SP:Q08654; match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase, glutamine amidotransferase component 534432..535061 Desulfovibrio vulgaris str. Hildenborough 2793607 YP_009691.1 CDS trpD NC_002937.3 535058 536056 D identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245; anthranilate phosphoribosyltransferase 535058..536056 Desulfovibrio vulgaris str. Hildenborough 2793608 YP_009692.1 CDS trpC NC_002937.3 536049 536822 D identified by match to protein family HMM PF00218; indole-3-glycerol phosphate synthase 536049..536822 Desulfovibrio vulgaris str. Hildenborough 2793609 YP_009693.1 CDS trpF-1 NC_002937.3 536870 537724 D identified by match to protein family HMM PF00697; N-(5'-phosphoribosyl)anthranilate isomerase 536870..537724 Desulfovibrio vulgaris str. Hildenborough 2793610 YP_009694.1 CDS trpB-2 NC_002937.3 537721 538908 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 537721..538908 Desulfovibrio vulgaris str. Hildenborough 2793611 YP_009695.1 CDS trpA NC_002937.3 538905 539678 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 538905..539678 Desulfovibrio vulgaris str. Hildenborough 2794713 YP_009696.1 CDS DVU0472 NC_002937.3 539866 540267 R hypothetical protein complement(539866..540267) Desulfovibrio vulgaris str. Hildenborough 2794714 YP_009697.1 CDS DVU0473 NC_002937.3 540281 540409 R hypothetical protein complement(540281..540409) Desulfovibrio vulgaris str. Hildenborough 2794715 YP_009698.1 CDS DVU0474 NC_002937.3 540442 541491 R identified by similarity to OMNI:SO3543; match to protein family HMM PF00665; ISDvu4, transposase complement(540442..541491) Desulfovibrio vulgaris str. Hildenborough 2794716 YP_009699.1 CDS DVU0475 NC_002937.3 541597 542037 R membrane protein , truncation complement(541597..542037) Desulfovibrio vulgaris str. Hildenborough 2794717 YP_009700.1 CDS DVU0476 NC_002937.3 542019 542234 D hypothetical protein 542019..542234 Desulfovibrio vulgaris str. Hildenborough 2794718 YP_009701.1 CDS icd NC_002937.3 542367 543509 D identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183; isocitrate dehydrogenase 542367..543509 Desulfovibrio vulgaris str. Hildenborough 2793622 YP_009702.1 CDS DVU0478 NC_002937.3 543608 544471 D identified by match to protein family HMM PF00149; serine/threonine protein phosphatase 543608..544471 Desulfovibrio vulgaris str. Hildenborough 2793623 YP_009703.1 CDS DVU0479 NC_002937.3 544595 546094 D identified by similarity to SP:P54736; match to protein family HMM PF00069; serine/threonine protein kinase 544595..546094 Desulfovibrio vulgaris str. Hildenborough 2793624 YP_009704.1 CDS DVU0480 NC_002937.3 546147 546878 D hypothetical protein 546147..546878 Desulfovibrio vulgaris str. Hildenborough 2793625 YP_009705.1 CDS rfaD NC_002937.3 547103 548074 D identified by similarity to SP:P17963; match to protein family HMM PF01370; ADP-L-glycero-D-manno-heptose-6-epimerase 547103..548074 Desulfovibrio vulgaris str. Hildenborough 2793626 YP_009706.1 CDS DVU0482 NC_002937.3 548195 549643 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator complement(548195..549643) Desulfovibrio vulgaris str. Hildenborough 2793627 YP_009707.1 CDS DVU0483 NC_002937.3 549943 552177 R identified by similarity to SP:P23367; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585; DNA mismatch repair protein MutL complement(549943..552177) Desulfovibrio vulgaris str. Hildenborough 2796550 YP_009708.1 CDS DVU0484 NC_002937.3 552380 553174 D identified by similarity to SP:P38046; match to protein family HMM PF00005; ABC transporter ATP-binding protein 552380..553174 Desulfovibrio vulgaris str. Hildenborough 2796551 YP_009709.1 CDS DVU0485 NC_002937.3 553171 553956 D identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 553171..553956 Desulfovibrio vulgaris str. Hildenborough 2796552 YP_009710.1 CDS DVU0486 NC_002937.3 554000 554329 D hypothetical protein 554000..554329 Desulfovibrio vulgaris str. Hildenborough 2796553 YP_009711.1 CDS purE NC_002937.3 554629 555129 R identified by similarity to SP:P12044; match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(554629..555129) Desulfovibrio vulgaris str. Hildenborough 2796554 YP_009712.1 CDS purD NC_002937.3 555143 556417 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(555143..556417) Desulfovibrio vulgaris str. Hildenborough 2796555 YP_009713.1 CDS paaK-1 NC_002937.3 556585 557883 D identified by similarity to SP:P76085; match to protein family HMM PF00501; phenylacetate-coenzyme A ligase 556585..557883 Desulfovibrio vulgaris str. Hildenborough 2793703 YP_009714.1 CDS DVU0491 NC_002937.3 559822 561027 D identified by similarity to OMNI:NTL01RS2515; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 559822..561027 Desulfovibrio vulgaris str. Hildenborough 2793705 YP_009715.1 CDS argC NC_002937.3 561263 562327 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(561263..562327) Desulfovibrio vulgaris str. Hildenborough 2793706 YP_009716.1 CDS DVU0493 NC_002937.3 562337 562645 R hypothetical protein complement(562337..562645) Desulfovibrio vulgaris str. Hildenborough 2793707 YP_009717.1 CDS DVU0494 NC_002937.3 562711 563880 R identified by match to protein family HMM PF00266; class V aminotransferase complement(562711..563880) Desulfovibrio vulgaris str. Hildenborough 2794722 YP_009718.1 CDS DVU0495 NC_002937.3 563891 565087 R identified by similarity to OMNI:NTL03PA00355; hypothetical protein complement(563891..565087) Desulfovibrio vulgaris str. Hildenborough 2794723 YP_009719.1 CDS polA NC_002937.3 565280 568327 R identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I complement(565280..568327) Desulfovibrio vulgaris str. Hildenborough 2794724 YP_009720.1 CDS DVU0497 NC_002937.3 568434 568682 R hypothetical protein complement(568434..568682) Desulfovibrio vulgaris str. Hildenborough 2794725 YP_009721.1 CDS DVU0498 NC_002937.3 568761 570266 R identified by similarity to OMNI:AF1263; match to protein family HMM PF00037; iron-sulfur cluster-binding protein complement(568761..570266) Desulfovibrio vulgaris str. Hildenborough 2794726 YP_009722.1 CDS DVU0499 NC_002937.3 570496 570891 R identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein complement(570496..570891) Desulfovibrio vulgaris str. Hildenborough 2794727 YP_009723.1 CDS selB NC_002937.3 571241 573169 D identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor 571241..573169 Desulfovibrio vulgaris str. Hildenborough 2796760 YP_009724.1 CDS DVU0501 NC_002937.3 573514 574335 R identified by similarity to OMNI:NT01MC0824; hypothetical protein complement(573514..574335) Desulfovibrio vulgaris str. Hildenborough 2796761 YP_009725.1 CDS DVU0502 NC_002937.3 574371 574814 R hypothetical protein complement(574371..574814) Desulfovibrio vulgaris str. Hildenborough 2796762 YP_009726.1 CDS pnp NC_002937.3 574964 577246 R identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase complement(574964..577246) Desulfovibrio vulgaris str. Hildenborough 2796763 YP_009727.1 CDS rpsO NC_002937.3 577418 577687 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(577418..577687) Desulfovibrio vulgaris str. Hildenborough 2796764 YP_009728.1 CDS truB NC_002937.3 577712 578626 R identified by similarity to SP:P09171; match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B complement(577712..578626) Desulfovibrio vulgaris str. Hildenborough 2796765 YP_009729.1 CDS DVU0506 NC_002937.3 578631 579632 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein complement(578631..579632) Desulfovibrio vulgaris str. Hildenborough 2793566 YP_009730.1 CDS DVU0507 NC_002937.3 579650 579940 R identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456; hypothetical protein complement(579650..579940) Desulfovibrio vulgaris str. Hildenborough 2793567 YP_009731.1 CDS infB NC_002937.3 580044 583283 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(580044..583283) Desulfovibrio vulgaris str. Hildenborough 2793568 YP_009732.1 CDS DVU0509 NC_002937.3 583287 583517 R identified by similarity to GP:642365; hypothetical protein complement(583287..583517) Desulfovibrio vulgaris str. Hildenborough 2793569 YP_009733.1 CDS nusA NC_002937.3 583521 584807 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(583521..584807) Desulfovibrio vulgaris str. Hildenborough 2793570 YP_009734.1 CDS DVU0511 NC_002937.3 584848 585366 R identified by similarity to OMNI:SO1202; match to protein family HMM PF02576; hypothetical protein complement(584848..585366) Desulfovibrio vulgaris str. Hildenborough 2794303 YP_009735.1 CDS DVU0512 NC_002937.3 585708 586490 D identified by similarity to SP:P75939; match to protein family HMM PF00460; flagellar basal-body rod protein 585708..586490 Desulfovibrio vulgaris str. Hildenborough 2794304 YP_009736.1 CDS flgG NC_002937.3 586547 587329 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 586547..587329 Desulfovibrio vulgaris str. Hildenborough 2794305 YP_009737.1 CDS DVU0514 NC_002937.3 587379 588311 D identified by match to protein family HMM PF03240; FlgA family protein 587379..588311 Desulfovibrio vulgaris str. Hildenborough 2794306 YP_009738.1 CDS flgH NC_002937.3 588330 589046 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 588330..589046 Desulfovibrio vulgaris str. Hildenborough 2794307 YP_009739.1 CDS flgI NC_002937.3 589056 590192 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 589056..590192 Desulfovibrio vulgaris str. Hildenborough 2794308 YP_009740.1 CDS DVU0517 NC_002937.3 590194 592026 D identified by similarity to SP:P75942; match to protein family HMM PF01551; M24/M37 family peptidase 590194..592026 Desulfovibrio vulgaris str. Hildenborough 2794799 YP_009741.1 CDS DVU0518 NC_002937.3 592050 592514 D hypothetical protein 592050..592514 Desulfovibrio vulgaris str. Hildenborough 2794800 YP_009742.1 CDS DVU0519 NC_002937.3 592514 594610 D identified by similarity to SP:P33235; match to protein family HMM PF00460; flagellar hook-associated protein FlgK 592514..594610 Desulfovibrio vulgaris str. Hildenborough 2794801 YP_009743.1 CDS DVU0520 NC_002937.3 594622 596193 D identified by match to protein family HMM PF00669; match to protein family HMM PF02012; flagellar hook-associated protein FlgL 594622..596193 Desulfovibrio vulgaris str. Hildenborough 2794802 YP_009744.1 CDS csrA NC_002937.3 596207 596443 D identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 596207..596443 Desulfovibrio vulgaris str. Hildenborough 2794803 YP_009745.1 CDS DVU0522 NC_002937.3 596422 596943 D binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 596422..596943 Desulfovibrio vulgaris str. Hildenborough 2794804 YP_009746.1 CDS flgM NC_002937.3 597294 597608 R identified by similarity to SP:P39809; match to protein family HMM PF04316; negative regulator of flagellin synthesis FlgM complement(597294..597608) Desulfovibrio vulgaris str. Hildenborough 2794889 YP_009747.1 CDS DVU0524 NC_002937.3 597634 598050 R hypothetical protein complement(597634..598050) Desulfovibrio vulgaris str. Hildenborough 2794890 YP_009748.1 CDS DVU0525 NC_002937.3 598268 598936 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 598268..598936 Desulfovibrio vulgaris str. Hildenborough 2794891 YP_009749.1 CDS DVU0526 NC_002937.3 598929 600332 D identified by similarity to OMNI:NTL02MA1611; drug resistance transporter 598929..600332 Desulfovibrio vulgaris str. Hildenborough 2794892 YP_009750.1 CDS maF NC_002937.3 600433 601065 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 600433..601065 Desulfovibrio vulgaris str. Hildenborough 2794893 YP_009751.1 CDS DVU0528 NC_002937.3 601058 601537 D identified by similarity to SP:P18200; match to protein family HMM PF04608; phosphatidylglycerophosphatase 601058..601537 Desulfovibrio vulgaris str. Hildenborough 2794894 YP_009752.1 CDS DVU0529 NC_002937.3 601638 602090 R identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family transcriptional regulator complement(601638..602090) Desulfovibrio vulgaris str. Hildenborough 2796178 YP_009753.1 CDS DVU0530 NC_002937.3 602094 602510 R identified by similarity to SP:P33394; match to protein family HMM PF00072; response regulator, rrf1 protein complement(602094..602510) Desulfovibrio vulgaris str. Hildenborough 2796179 YP_009754.1 CDS DVU0531 NC_002937.3 602603 603988 R identified by similarity to SP:P33393; match to protein family HMM PF02754; hmc operon protein 6 complement(602603..603988) Desulfovibrio vulgaris str. Hildenborough 2796180 YP_009755.1 CDS DVU0532 NC_002937.3 604012 604692 R identified by similarity to SP:P33392; hmc operon protein 5 complement(604012..604692) Desulfovibrio vulgaris str. Hildenborough 2796181 YP_009756.1 CDS DVU0533 NC_002937.3 604714 604857 R identified by similarity to SP:P33391; hmc operon protein 4 complement(604714..604857) Desulfovibrio vulgaris str. Hildenborough 2796182 YP_009757.1 CDS DVU0534 NC_002937.3 604873 606039 R identified by similarity to SP:P33390; match to protein family HMM PF03916; hmc operon protein 3 complement(604873..606039) Desulfovibrio vulgaris str. Hildenborough 2796183 YP_009758.1 CDS DVU0535 NC_002937.3 606040 607152 R identified by similarity to SP:P33389; match to protein family HMM PF00037; match to protein family HMM TIGR01409; hmc operon protein 2 complement(606040..607152) Desulfovibrio vulgaris str. Hildenborough 2796184 YP_009759.1 CDS hmcA NC_002937.3 607171 608853 R identified by similarity to SP:P24092; match to protein family HMM PF02085; high-molecular-weight cytochrome C complement(607171..608853) Desulfovibrio vulgaris str. Hildenborough 2795573 YP_009760.1 CDS DVU0537 NC_002937.3 609020 609205 R hypothetical protein complement(609020..609205) Desulfovibrio vulgaris str. Hildenborough 2795574 YP_009761.1 CDS DVU0538 NC_002937.3 609243 610031 D identified by match to protein family HMM PF01261; AP endonuclease 609243..610031 Desulfovibrio vulgaris str. Hildenborough 2795575 YP_009762.1 CDS DVU0539 NC_002937.3 610049 611452 R identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator complement(610049..611452) Desulfovibrio vulgaris str. Hildenborough 2795576 YP_009763.1 CDS DVU0540 NC_002937.3 611436 613847 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(611436..613847) Desulfovibrio vulgaris str. Hildenborough 2795577 YP_009764.1 CDS DVU0541 NC_002937.3 614023 614148 D lipoprotein 614023..614148 Desulfovibrio vulgaris str. Hildenborough 2795578 YP_009765.1 CDS DVU0542 NC_002937.3 614145 614567 D identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582; universal stress protein 614145..614567 Desulfovibrio vulgaris str. Hildenborough 2794532 YP_009766.1 CDS DVU0543 NC_002937.3 614589 615698 D hypothetical protein 614589..615698 Desulfovibrio vulgaris str. Hildenborough 2794533 YP_009767.1 CDS DVU0544 NC_002937.3 615721 616122 D hypothetical protein 615721..616122 Desulfovibrio vulgaris str. Hildenborough 2794534 YP_009768.1 CDS DVU0545 NC_002937.3 616122 616547 D identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582; hypothetical protein 616122..616547 Desulfovibrio vulgaris str. Hildenborough 2794535 YP_009769.1 CDS DVU0546 NC_002937.3 616827 617003 R hypothetical protein complement(616827..617003) Desulfovibrio vulgaris str. Hildenborough 2794536 YP_009770.1 CDS DVU0547 NC_002937.3 616996 618114 D identified by match to protein family HMM PF01094; high-affinity branched chain amino acid ABC transporter periplasmic branched chain amino acid-binding protein 616996..618114 Desulfovibrio vulgaris str. Hildenborough 2794537 YP_009771.1 CDS DVU0548 NC_002937.3 618218 619126 D identified by similarity to SP:P08340; match to protein family HMM PF02653; high-affinity branched-chain amino acid ABC transporter permease 618218..619126 Desulfovibrio vulgaris str. Hildenborough 2794431 YP_009772.1 CDS DVU0549 NC_002937.3 619154 620377 D identified by similarity to SP:P21628; match to protein family HMM PF02653; high-affinity branched-chain amino acid ABC transporter permease 619154..620377 Desulfovibrio vulgaris str. Hildenborough 2794432 YP_009773.1 CDS DVU0550 NC_002937.3 620377 621165 D identified by similarity to SP:P22730; match to protein family HMM PF00005; high-affinity branched-chain amino acid ABC transporter ATP binding protein 620377..621165 Desulfovibrio vulgaris str. Hildenborough 2794433 YP_009774.1 CDS DVU0551 NC_002937.3 621158 621862 D identified by similarity to SP:P22731; match to protein family HMM PF00005; high-affinity branched-chain amino acid ABC transporter ATP-binding protein 621158..621862 Desulfovibrio vulgaris str. Hildenborough 2794434 YP_009775.1 CDS DVU0552 NC_002937.3 622064 623029 D identified by similarity to GP:14250952; match to protein family HMM PF00535; hypothetical protein 622064..623029 Desulfovibrio vulgaris str. Hildenborough 2794435 YP_009776.1 CDS DVU0553 NC_002937.3 623122 623373 R hypothetical protein complement(623122..623373) Desulfovibrio vulgaris str. Hildenborough 2794436 YP_009777.1 CDS DVU0554 NC_002937.3 623355 624293 D identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 623355..624293 Desulfovibrio vulgaris str. Hildenborough 2794437 YP_009778.1 CDS DVU0555 NC_002937.3 624333 624587 D hypothetical protein 624333..624587 Desulfovibrio vulgaris str. Hildenborough 2795338 YP_009779.1 CDS DVU0556 NC_002937.3 624615 624878 D identified by similarity to GP:14286345; match to protein family HMM PF01527; ISDvu3, transposase OrfA 624615..624878 Desulfovibrio vulgaris str. Hildenborough 2795339 YP_009780.1 CDS DVU0558 NC_002937.3 626376 626501 D hypothetical protein 626376..626501 Desulfovibrio vulgaris str. Hildenborough 2795341 YP_009782.2 CDS DVU0560 NC_002937.3 626553 627134 D identified by similarity to OMNI:MT0861; hypothetical protein 626553..627134 Desulfovibrio vulgaris str. Hildenborough 2794780 YP_009783.1 CDS DVU0561 NC_002937.3 627172 628275 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 627172..628275 Desulfovibrio vulgaris str. Hildenborough 2794781 YP_009784.1 CDS DVU0562 NC_002937.3 628388 628654 D identified by similarity to GP:2645860; match to protein family HMM PF01527; ISD1, transposase OrfA 628388..628654 Desulfovibrio vulgaris str. Hildenborough 2794782 YP_009785.1 CDS DVU0563 NC_002937.3 628675 629499 D identified by similarity to GP:2645861; match to protein family HMM PF00665; ISD1, transposase OrfB 628675..629499 Desulfovibrio vulgaris str. Hildenborough 2794783 YP_009786.1 CDS DVU0564 NC_002937.3 629480 629875 R identified by similarity to OMNI:SO3543; ISDvu4, transposase, truncation complement(629480..629875) Desulfovibrio vulgaris str. Hildenborough 2795889 YP_009787.1 CDS gap-1 NC_002937.3 630087 631103 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase complement(630087..631103) Desulfovibrio vulgaris str. Hildenborough 2795890 YP_009788.1 CDS DVU0566 NC_002937.3 631123 631680 R identified by match to protein family HMM PF01590; GAF domain-containing protein complement(631123..631680) Desulfovibrio vulgaris str. Hildenborough 2795891 YP_009789.1 CDS DVU0567 NC_002937.3 631895 632974 R identified by match to protein family HMM PF03741; TerC family protein complement(631895..632974) Desulfovibrio vulgaris str. Hildenborough 2795892 YP_009790.1 CDS DVU0568 NC_002937.3 633096 634136 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(633096..634136) Desulfovibrio vulgaris str. Hildenborough 2795893 YP_009791.1 CDS DVU0569 NC_002937.3 634415 635995 D identified by match to protein family HMM PF00158; match to protein family HMM PF01842; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 634415..635995 Desulfovibrio vulgaris str. Hildenborough 2795894 YP_009792.1 CDS DVU0570 NC_002937.3 635992 636168 D hypothetical protein 635992..636168 Desulfovibrio vulgaris str. Hildenborough 2793415 YP_009793.1 CDS ald NC_002937.3 636374 637486 D identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 636374..637486 Desulfovibrio vulgaris str. Hildenborough 2793416 YP_009794.1 CDS DVU0572 NC_002937.3 637893 638231 D hypothetical protein 637893..638231 Desulfovibrio vulgaris str. Hildenborough 2793417 YP_009795.1 CDS creA NC_002937.3 638724 639149 D identified by similarity to SP:P08367; creA protein 638724..639149 Desulfovibrio vulgaris str. Hildenborough 2793418 YP_003858605.1 CDS DVU4025 NC_002937.3 639295 639978 D hypothetical protein 639295..639978 Desulfovibrio vulgaris str. Hildenborough 9714858 YP_009797.1 CDS DVU0575 NC_002937.3 640283 640564 R hypothetical protein complement(640283..640564) Desulfovibrio vulgaris str. Hildenborough 2793420 YP_009798.1 CDS msrB NC_002937.3 640793 641224 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(640793..641224) Desulfovibrio vulgaris str. Hildenborough 2793421 YP_009799.1 CDS DVU0577 NC_002937.3 641591 642472 D identified by similarity to SP:P44452; formate dehydrogenase formation protein FdhE 641591..642472 Desulfovibrio vulgaris str. Hildenborough 2794562 YP_009800.1 CDS DVU0578 NC_002937.3 642474 643262 D identified by match to protein family HMM PF02634; formate dehydrogenase accessory protein FdhD 642474..643262 Desulfovibrio vulgaris str. Hildenborough 2794563 YP_009801.1 CDS DVU0579 NC_002937.3 643259 643927 D identified by similarity to SP:O31701; molybdopterin-guanine dinucleotide biosynthesis protein A 643259..643927 Desulfovibrio vulgaris str. Hildenborough 2794564 YP_009802.1 CDS moaA NC_002937.3 643924 644949 D identified by similarity to SP:Q44118; match to protein family HMM PF04055; molybdenum cofactor biosynthesis protein A 643924..644949 Desulfovibrio vulgaris str. Hildenborough 2794565 YP_009803.1 CDS DVU0581 NC_002937.3 645186 645887 R identified by match to protein family HMM PF00072; response regulator/anti-anti-sigma factor complement(645186..645887) Desulfovibrio vulgaris str. Hildenborough 2794566 YP_009804.1 CDS DVU0582 NC_002937.3 645923 647941 R identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(645923..647941) Desulfovibrio vulgaris str. Hildenborough 2794567 YP_009805.1 CDS DVU0583 NC_002937.3 647938 649209 R identified by match to protein family HMM PF01094; lipoprotein complement(647938..649209) Desulfovibrio vulgaris str. Hildenborough 2794160 YP_009806.1 CDS DVU0584 NC_002937.3 649275 650213 D identified by similarity to OMNI:NTL01NM00438; transposase 649275..650213 Desulfovibrio vulgaris str. Hildenborough 2794161 YP_009807.1 CDS DVU0585 NC_002937.3 650376 652769 R identified by similarity to OMNI:NTL01PF1838; hypothetical protein complement(650376..652769) Desulfovibrio vulgaris str. Hildenborough 2794162 YP_009808.1 CDS DVU0586 NC_002937.3 653145 653369 D hypothetical protein 653145..653369 Desulfovibrio vulgaris str. Hildenborough 2794163 YP_009809.1 CDS fdnG-1 NC_002937.3 653387 656404 D selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; formate dehydrogenase subunit alpha 653387..656404 Desulfovibrio vulgaris str. Hildenborough 2794164 YP_009810.1 CDS DVU0588 NC_002937.3 656416 657126 D identified by similarity to SP:P32175; formate dehydrogenase subunit beta 656416..657126 Desulfovibrio vulgaris str. Hildenborough 2794165 YP_009811.1 CDS DVU0589 NC_002937.3 657590 658330 D identified by match to protein family HMM PF03205; match to protein family HMM PF04060; molybdopterin-guanine dinucleotide biosynthesis protein MobB 657590..658330 Desulfovibrio vulgaris str. Hildenborough 2794166 YP_009812.1 CDS DVU0590 NC_002937.3 658718 659122 D hypothetical protein 658718..659122 Desulfovibrio vulgaris str. Hildenborough 2794088 YP_009813.1 CDS DVU0591 NC_002937.3 659306 661264 D identified by similarity to SP:P02942; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 659306..661264 Desulfovibrio vulgaris str. Hildenborough 2794089 YP_009814.1 CDS cheW-1 NC_002937.3 661310 661831 D identified by similarity to SP:P07365; match to protein family HMM PF01584; chemotaxis protein CheW 661310..661831 Desulfovibrio vulgaris str. Hildenborough 2794090 YP_009815.1 CDS DVU0593 NC_002937.3 662191 662811 R identified by match to protein family HMM PF01810; L-lysine exporter complement(662191..662811) Desulfovibrio vulgaris str. Hildenborough 2794091 YP_009816.1 CDS iciA NC_002937.3 662909 663811 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 662909..663811 Desulfovibrio vulgaris str. Hildenborough 2794092 YP_009817.1 CDS DVU0595 NC_002937.3 663965 664312 D identified by similarity to OMNI:AF0913; hypothetical protein 663965..664312 Desulfovibrio vulgaris str. Hildenborough 2794093 YP_009818.1 CDS lytR NC_002937.3 664472 665245 D identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator LytR 664472..665245 Desulfovibrio vulgaris str. Hildenborough 2793524 YP_009819.1 CDS lytS NC_002937.3 665371 667086 D identified by similarity to GP:862312; match to protein family HMM PF02518; regulatory protein LytS 665371..667086 Desulfovibrio vulgaris str. Hildenborough 2793525 YP_009820.1 CDS DVU0598 NC_002937.3 667290 668711 D identified by match to protein family HMM PF02554; carbon starvation protein A 667290..668711 Desulfovibrio vulgaris str. Hildenborough 2793526 YP_009821.1 CDS DVU0599 NC_002937.3 669038 670459 D identified by match to protein family HMM PF02554; carbon starvation protein A 669038..670459 Desulfovibrio vulgaris str. Hildenborough 2793527 YP_009822.1 CDS ldh NC_002937.3 670757 671686 D identified by similarity to SP:P00345; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase 670757..671686 Desulfovibrio vulgaris str. Hildenborough 2793528 YP_009823.1 CDS DVU0601 NC_002937.3 672098 672532 D identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369; phenylacetic acid degradation protein PaaI 672098..672532 Desulfovibrio vulgaris str. Hildenborough 2793529 YP_009824.1 CDS DVU0602 NC_002937.3 672841 673203 R hypothetical protein complement(672841..673203) Desulfovibrio vulgaris str. Hildenborough 2793363 YP_009825.1 CDS DVU0603 NC_002937.3 673432 673698 R hypothetical protein complement(673432..673698) Desulfovibrio vulgaris str. Hildenborough 2793364 YP_009826.1 CDS DVU0604 NC_002937.3 673695 673826 R hypothetical protein complement(673695..673826) Desulfovibrio vulgaris str. Hildenborough 2793365 YP_009827.1 CDS DVU0605 NC_002937.3 673809 673937 D hypothetical protein 673809..673937 Desulfovibrio vulgaris str. Hildenborough 2793366 YP_009828.1 CDS DVU0606 NC_002937.3 674210 675133 D identified by match to protein family HMM PF01022; match to protein family HMM PF01209; ArsR family transcriptional regulator 674210..675133 Desulfovibrio vulgaris str. Hildenborough 2793367 YP_009829.1 CDS ahcY NC_002937.3 675159 676598 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 675159..676598 Desulfovibrio vulgaris str. Hildenborough 2793368 YP_009830.1 CDS DVU0608 NC_002937.3 676751 678784 R identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(676751..678784) Desulfovibrio vulgaris str. Hildenborough 2794094 YP_009831.1 CDS DVU0609 NC_002937.3 678940 679575 R identified by similarity to OMNI:NTL01SM01830; lipoprotein complement(678940..679575) Desulfovibrio vulgaris str. Hildenborough 2794095 YP_009832.1 CDS DVU0610 NC_002937.3 679572 680492 R identified by similarity to OMNI:NTL03PA03213; match to protein family HMM PF02470; hypothetical protein complement(679572..680492) Desulfovibrio vulgaris str. Hildenborough 2794096 YP_009833.1 CDS DVU0611 NC_002937.3 680517 681344 R identified by similarity to GP:21109946; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(680517..681344) Desulfovibrio vulgaris str. Hildenborough 2794097 YP_009834.1 CDS DVU0612 NC_002937.3 681360 682580 R identified by similarity to GP:9106294; match to protein family HMM PF01740; match to protein family HMM PF02405; match to protein family HMM TIGR00056; STAS domain-containing protein complement(681360..682580) Desulfovibrio vulgaris str. Hildenborough 2794098 YP_009835.1 CDS DVU0613 NC_002937.3 682807 682905 D hypothetical protein 682807..682905 Desulfovibrio vulgaris str. Hildenborough 2794099 YP_009836.1 CDS DVU0614 NC_002937.3 683049 683330 R hypothetical protein complement(683049..683330) Desulfovibrio vulgaris str. Hildenborough 2794400 YP_009837.1 CDS DVU0615 NC_002937.3 683330 683494 D hypothetical protein 683330..683494 Desulfovibrio vulgaris str. Hildenborough 2794401 YP_009838.1 CDS DVU0616 NC_002937.3 683510 683902 R hypothetical protein complement(683510..683902) Desulfovibrio vulgaris str. Hildenborough 2794402 YP_009839.1 CDS DVU0617 NC_002937.3 683895 684185 R hypothetical protein complement(683895..684185) Desulfovibrio vulgaris str. Hildenborough 2794403 YP_009840.1 CDS DVU0618 NC_002937.3 684215 684370 D hypothetical protein 684215..684370 Desulfovibrio vulgaris str. Hildenborough 2794404 YP_009841.1 CDS DVU0619 NC_002937.3 684470 685909 R identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator complement(684470..685909) Desulfovibrio vulgaris str. Hildenborough 2794405 YP_009842.1 CDS DVU0620 NC_002937.3 686025 686408 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; L-PSP family endoribonuclease 686025..686408 Desulfovibrio vulgaris str. Hildenborough 2794406 YP_009843.1 CDS DVU0621 NC_002937.3 686695 688092 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator complement(686695..688092) Desulfovibrio vulgaris str. Hildenborough 2796145 YP_009844.1 CDS DVU0622 NC_002937.3 688231 690729 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator complement(688231..690729) Desulfovibrio vulgaris str. Hildenborough 2796146 YP_009845.1 CDS DVU0623 NC_002937.3 690717 691034 D hypothetical protein 690717..691034 Desulfovibrio vulgaris str. Hildenborough 2796147 YP_009846.1 CDS DVU0624 NC_002937.3 691072 691551 D identified by similarity to SP:P33226; NapC/NirT cytochrome c family protein 691072..691551 Desulfovibrio vulgaris str. Hildenborough 2796148 YP_009847.1 CDS DVU0625 NC_002937.3 691544 693118 D identified by similarity to GP:5748660; match to protein family HMM PF02335; cytochrome c nitrite reductase, catalytic subunit NfrA 691544..693118 Desulfovibrio vulgaris str. Hildenborough 2796149 YP_009848.1 CDS ilvN-1 NC_002937.3 693551 694030 D identified by similarity to SP:P37252; match to protein family HMM PF01842; match to protein family HMM TIGR00119; acetolactate synthase small subunit 693551..694030 Desulfovibrio vulgaris str. Hildenborough 2796150 YP_009849.1 CDS ptB NC_002937.3 694034 695065 D identified by similarity to GP:457633; match to protein family HMM PF01515; phosphotransbutyrylase 694034..695065 Desulfovibrio vulgaris str. Hildenborough 2796151 YP_009850.1 CDS buk NC_002937.3 695062 696180 D catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 695062..696180 Desulfovibrio vulgaris str. Hildenborough 2794550 YP_009851.1 CDS DVU0629 NC_002937.3 696323 696883 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 696323..696883 Desulfovibrio vulgaris str. Hildenborough 2794551 YP_009852.1 CDS DVU0630 NC_002937.3 696887 697063 D hypothetical protein 696887..697063 Desulfovibrio vulgaris str. Hildenborough 2794552 YP_009853.1 CDS DVU0631 NC_002937.3 697251 698816 R identified by similarity to GP:14041200; hypothetical protein complement(697251..698816) Desulfovibrio vulgaris str. Hildenborough 2794553 YP_009854.1 CDS DVU0632 NC_002937.3 699063 699680 R identified by match to protein family HMM PF00190; cupin family protein complement(699063..699680) Desulfovibrio vulgaris str. Hildenborough 2794554 YP_009855.1 CDS DVU0633 NC_002937.3 699680 702103 R identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein complement(699680..702103) Desulfovibrio vulgaris str. Hildenborough 2794555 YP_009856.1 CDS DVU0634 NC_002937.3 702115 702681 R hypothetical protein complement(702115..702681) Desulfovibrio vulgaris str. Hildenborough 2794556 YP_009857.1 CDS DVU0635 NC_002937.3 702696 704282 R identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase complement(702696..704282) Desulfovibrio vulgaris str. Hildenborough 2794105 YP_009858.1 CDS DVU0636 NC_002937.3 704799 706112 D identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator/GGDEF domain-containing protein 704799..706112 Desulfovibrio vulgaris str. Hildenborough 2794106 YP_009859.1 CDS DVU0637 NC_002937.3 706392 707780 D identified by similarity to OMNI:NTL01PH00308; hypothetical protein 706392..707780 Desulfovibrio vulgaris str. Hildenborough 2794107 YP_009860.1 CDS DVU0638 NC_002937.3 707913 708779 R identified by similarity to OMNI:CT0045; hypothetical protein complement(707913..708779) Desulfovibrio vulgaris str. Hildenborough 2794108 YP_009861.1 CDS pomB NC_002937.3 709562 710335 R identified by similarity to GP:2130949; match to protein family HMM PF00691; chemotaxis protein PomB complement(709562..710335) Desulfovibrio vulgaris str. Hildenborough 2794110 YP_009862.1 CDS pomA NC_002937.3 710339 711091 R identified by similarity to SP:O06873; match to protein family HMM PF01618; chemotaxis protein PomA complement(710339..711091) Desulfovibrio vulgaris str. Hildenborough 2794332 YP_009863.1 CDS DVU0641 NC_002937.3 711092 712240 R identified by similarity to OMNI:TM0735; hypothetical protein complement(711092..712240) Desulfovibrio vulgaris str. Hildenborough 2794333 YP_009864.1 CDS DVU0642 NC_002937.3 712640 713452 D identified by similarity to GP:2935027; match to protein family HMM PF00561; alpha/beta fold family hydrolase 712640..713452 Desulfovibrio vulgaris str. Hildenborough 2794334 YP_009865.1 CDS DVU0643 NC_002937.3 713684 714376 D identified by similarity to SP:P30138; match to protein family HMM PF00899; thiF protein 713684..714376 Desulfovibrio vulgaris str. Hildenborough 2794335 YP_009866.1 CDS DVU0644 NC_002937.3 714570 714803 R hypothetical protein complement(714570..714803) Desulfovibrio vulgaris str. Hildenborough 2794336 YP_009867.1 CDS DVU0645 NC_002937.3 714819 716858 D identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 714819..716858 Desulfovibrio vulgaris str. Hildenborough 2794337 YP_009868.1 CDS cobI NC_002937.3 717068 717838 R identified by similarity to SP:Q05593; match to protein family HMM PF00590; match to protein family HMM TIGR01467; precorrin-2 C(20)-methyltransferase complement(717068..717838) Desulfovibrio vulgaris str. Hildenborough 2794338 YP_009869.1 CDS DVU0647 NC_002937.3 717840 718754 R identified by similarity to OMNI:DRB0007; match to protein family HMM PF01497; iron compound ABC transporter periplasmic iron compount-binding protein complement(717840..718754) Desulfovibrio vulgaris str. Hildenborough 2795037 YP_009870.1 CDS DVU0648 NC_002937.3 718732 719547 R identified by similarity to SP:P07821; match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein complement(718732..719547) Desulfovibrio vulgaris str. Hildenborough 2795038 YP_009871.1 CDS DVU0649 NC_002937.3 719544 720599 R identified by similarity to PIR:S54438; match to protein family HMM PF01032; iron compound ABC transporter permease complement(719544..720599) Desulfovibrio vulgaris str. Hildenborough 2795039 YP_009872.1 CDS DVU0650 NC_002937.3 720601 721494 R identified by similarity to SP:Q05592; match to protein family HMM PF06180; chelatase complement(720601..721494) Desulfovibrio vulgaris str. Hildenborough 2795040 YP_009873.1 CDS DVU0651 NC_002937.3 722121 723209 R hypothetical protein complement(722121..723209) Desulfovibrio vulgaris str. Hildenborough 2795041 YP_009874.1 CDS cheV-2 NC_002937.3 723349 724299 D identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 723349..724299 Desulfovibrio vulgaris str. Hildenborough 2795042 YP_009875.1 CDS DVU0653 NC_002937.3 724910 726595 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator /response regulator complement(724910..726595) Desulfovibrio vulgaris str. Hildenborough 2795043 YP_009876.1 CDS DVU0654 NC_002937.3 726616 727842 R identified by match to protein family HMM PF01136; U32 family peptidase complement(726616..727842) Desulfovibrio vulgaris str. Hildenborough 2794240 YP_009877.1 CDS DVU0655 NC_002937.3 727882 728748 R identified by match to protein family HMM PF02231; phosphotransferase domain-containing protein complement(727882..728748) Desulfovibrio vulgaris str. Hildenborough 2794241 YP_009878.1 CDS DVU0656 NC_002937.3 728887 729096 D identified by similarity to OMNI:NTL02SC2888; match to protein family HMM PF03966; hypothetical protein 728887..729096 Desulfovibrio vulgaris str. Hildenborough 2794242 YP_009879.1 CDS DVU0657 NC_002937.3 729163 729576 D identified by match to protein family HMM PF00011; HSP20 family protein 729163..729576 Desulfovibrio vulgaris str. Hildenborough 2794243 YP_009880.1 CDS DVU0658 NC_002937.3 729587 730048 D identified by match to protein family HMM PF00011; HSP20 family protein 729587..730048 Desulfovibrio vulgaris str. Hildenborough 2794244 YP_009881.1 CDS DVU0659 NC_002937.3 730307 731077 R hypothetical protein complement(730307..731077) Desulfovibrio vulgaris str. Hildenborough 2794245 YP_009882.1 CDS DVU0660 NC_002937.3 731288 731854 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 731288..731854 Desulfovibrio vulgaris str. Hildenborough 2794246 YP_009883.1 CDS DVU0661 NC_002937.3 732072 733070 D identified by match to protein family HMM PF01207; dihydrouridine synthase 732072..733070 Desulfovibrio vulgaris str. Hildenborough 2793600 YP_009884.1 CDS cysE NC_002937.3 733256 734227 R identified by similarity to SP:Q59967; match to protein family HMM PF00132; serine O-acetyltransferase complement(733256..734227) Desulfovibrio vulgaris str. Hildenborough 2793601 YP_009885.1 CDS cysK NC_002937.3 734395 735321 R identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A complement(734395..735321) Desulfovibrio vulgaris str. Hildenborough 2793602 YP_009886.1 CDS DVU0664 NC_002937.3 735449 736633 R identified by similarity to SP:O54055; match to protein family HMM PF00266; cysteine desulfurase complement(735449..736633) Desulfovibrio vulgaris str. Hildenborough 2793603 YP_009887.1 CDS DVU0665 NC_002937.3 736630 737475 R identified by similarity to SP:P20628; match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; nitrogen fixation protein nifU complement(736630..737475) Desulfovibrio vulgaris str. Hildenborough 2793604 YP_009888.1 CDS DVU0666 NC_002937.3 737572 738570 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(737572..738570) Desulfovibrio vulgaris str. Hildenborough 2793605 YP_009889.1 CDS DVU0667 NC_002937.3 738684 739673 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(738684..739673) Desulfovibrio vulgaris str. Hildenborough 2793606 YP_009890.1 CDS DVU0668 NC_002937.3 739843 741429 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 739843..741429 Desulfovibrio vulgaris str. Hildenborough 2794692 YP_009891.1 CDS DVU0669 NC_002937.3 741595 742365 D hypothetical protein 741595..742365 Desulfovibrio vulgaris str. Hildenborough 2794693 YP_009892.1 CDS DVU0670 NC_002937.3 742386 743657 D identified by match to protein family HMM PF04932; exopolysaccharide production protein 742386..743657 Desulfovibrio vulgaris str. Hildenborough 2794694 YP_009893.1 CDS DVU0671 NC_002937.3 743817 745454 R identified by similarity to OMNI:TM1058; hypothetical protein complement(743817..745454) Desulfovibrio vulgaris str. Hildenborough 2794695 YP_009894.1 CDS DVU0672 NC_002937.3 745612 745764 D hypothetical protein 745612..745764 Desulfovibrio vulgaris str. Hildenborough 2794696 YP_009895.1 CDS DVU0673 NC_002937.3 745815 745982 R hypothetical protein complement(745815..745982) Desulfovibrio vulgaris str. Hildenborough 2794697 YP_009896.1 CDS DVU0674 NC_002937.3 746331 747146 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 746331..747146 Desulfovibrio vulgaris str. Hildenborough 2794698 YP_009897.1 CDS DVU0675 NC_002937.3 747176 747997 D identified by match to protein family HMM PF00497; amino acid ABC transporter periplasmic amino acid-binding protein 747176..747997 Desulfovibrio vulgaris str. Hildenborough 2794167 YP_009898.1 CDS DVU0676 NC_002937.3 748069 748956 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 748069..748956 Desulfovibrio vulgaris str. Hildenborough 2794168 YP_009899.1 CDS DVU0677 NC_002937.3 749238 750287 R identified by similarity to SP:P41052; transglycosylase complement(749238..750287) Desulfovibrio vulgaris str. Hildenborough 2794169 YP_009900.1 CDS DVU0678 NC_002937.3 750440 750544 D hypothetical protein 750440..750544 Desulfovibrio vulgaris str. Hildenborough 2794170 YP_009901.1 CDS DVU0679 NC_002937.3 750641 752107 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator complement(750641..752107) Desulfovibrio vulgaris str. Hildenborough 2794171 YP_009902.1 CDS DVU0680 NC_002937.3 752095 754167 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(752095..754167) Desulfovibrio vulgaris str. Hildenborough 2794172 YP_009903.1 CDS DVU0681 NC_002937.3 754029 756032 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator complement(754029..756032) Desulfovibrio vulgaris str. Hildenborough 2795331 YP_009904.1 CDS DVU0682 NC_002937.3 756252 757040 R DNA-binding protein complement(756252..757040) Desulfovibrio vulgaris str. Hildenborough 2795332 YP_009905.1 CDS DVU0683 NC_002937.3 757279 758130 R identified by similarity to SP:P25661; match to protein family HMM PF01145; hflC protein complement(757279..758130) Desulfovibrio vulgaris str. Hildenborough 2795333 YP_009906.1 CDS DVU0684 NC_002937.3 758132 759268 R identified by similarity to SP:P25662; match to protein family HMM PF01145; hflK protein complement(758132..759268) Desulfovibrio vulgaris str. Hildenborough 2795334 YP_009907.1 CDS DVU0685 NC_002937.3 759320 760681 D identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 759320..760681 Desulfovibrio vulgaris str. Hildenborough 2795335 YP_009908.1 CDS DVU0686 NC_002937.3 760765 761253 D identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 760765..761253 Desulfovibrio vulgaris str. Hildenborough 2795336 YP_009909.1 CDS DVU0687 NC_002937.3 761222 763006 D identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730; tungsten-containing aldehyde:ferredoxin oxidoreductase 761222..763006 Desulfovibrio vulgaris str. Hildenborough 2795337 YP_009910.1 CDS DVU0688 NC_002937.3 763007 763507 D hypothetical protein 763007..763507 Desulfovibrio vulgaris str. Hildenborough 2793628 YP_009911.1 CDS rnhA NC_002937.3 763517 763987 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 763517..763987 Desulfovibrio vulgaris str. Hildenborough 2793629 YP_009912.1 CDS DVU0690 NC_002937.3 764349 765020 D identified by similarity to GP:28809584; hypothetical protein 764349..765020 Desulfovibrio vulgaris str. Hildenborough 2793630 YP_009913.1 CDS DVU0691 NC_002937.3 765035 765994 D hypothetical protein 765035..765994 Desulfovibrio vulgaris str. Hildenborough 2793631 YP_009914.1 CDS DVU0692 NC_002937.3 766527 767786 R identified by similarity to SP:P37180; molybdopterin oxidoreductase, transmembrane subunit complement(766527..767786) Desulfovibrio vulgaris str. Hildenborough 2793632 YP_009915.1 CDS DVU0693 NC_002937.3 767790 768557 R identified by similarity to SP:P31076; match to protein family HMM PF00037; molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit complement(767790..768557) Desulfovibrio vulgaris str. Hildenborough 2793633 YP_009916.1 CDS DVU0694 NC_002937.3 768570 770645 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01409; molybdopterin oxidoreductase, molybdopterin-binding subunit complement(768570..770645) Desulfovibrio vulgaris str. Hildenborough 2793634 YP_003858606.1 CDS DVU4027 NC_002937.3 770661 771293 R hypothetical protein complement(770661..771293) Desulfovibrio vulgaris str. Hildenborough 9714857 YP_009918.1 CDS DVU0696 NC_002937.3 771610 771738 D hypothetical protein 771610..771738 Desulfovibrio vulgaris str. Hildenborough 2794447 YP_009919.1 CDS DVU0697 NC_002937.3 771808 773226 R identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(771808..773226) Desulfovibrio vulgaris str. Hildenborough 2794448 YP_009920.1 CDS rfbC NC_002937.3 773223 773795 R identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase complement(773223..773795) Desulfovibrio vulgaris str. Hildenborough 2794449 YP_009921.1 CDS DVU0700 NC_002937.3 776063 778519 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein complement(776063..778519) Desulfovibrio vulgaris str. Hildenborough 2794452 YP_009922.1 CDS glcB NC_002937.3 778761 780950 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 778761..780950 Desulfovibrio vulgaris str. Hildenborough 2795485 YP_009923.1 CDS DVU0702 NC_002937.3 781566 782012 D identified by similarity to SP:Q57142; cytochrome c family protein 781566..782012 Desulfovibrio vulgaris str. Hildenborough 2795486 YP_009924.1 CDS lepA NC_002937.3 782190 783995 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 782190..783995 Desulfovibrio vulgaris str. Hildenborough 2795487 YP_009925.1 CDS lepB NC_002937.3 784042 784641 D identified by similarity to SP:P26844; match to protein family HMM PF00461; signal peptidase I 784042..784641 Desulfovibrio vulgaris str. Hildenborough 2795488 YP_009926.1 CDS dctM NC_002937.3 785091 786374 R identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786; TRAP C4-dicarboxylate transport system permease DctM complement(785091..786374) Desulfovibrio vulgaris str. Hildenborough 2795489 YP_009927.1 CDS DVU0706 NC_002937.3 786371 786841 R identified by match to protein family HMM PF04290; TRAP C4-dicarboxylate transport system subunit DctQ complement(786371..786841) Desulfovibrio vulgaris str. Hildenborough 2795490 YP_009928.1 CDS dctP NC_002937.3 786926 787942 R identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787; TRAP dicarboxylate family transporter subunit DctP complement(786926..787942) Desulfovibrio vulgaris str. Hildenborough 2795491 YP_009929.1 CDS DVU0708 NC_002937.3 788163 788315 D hypothetical protein 788163..788315 Desulfovibrio vulgaris str. Hildenborough 2795404 YP_009930.1 CDS DVU0709 NC_002937.3 788176 788436 D hypothetical protein 788176..788436 Desulfovibrio vulgaris str. Hildenborough 2795405 YP_009931.1 CDS DVU0710 NC_002937.3 788925 790589 D identified by similarity to SP:P45049; match to protein family HMM PF01078; match to protein family HMM TIGR00368; competence protein comM 788925..790589 Desulfovibrio vulgaris str. Hildenborough 2795406 YP_009932.1 CDS DVU0711 NC_002937.3 790673 791314 D hypothetical protein 790673..791314 Desulfovibrio vulgaris str. Hildenborough 2795407 YP_009933.1 CDS DVU0712 NC_002937.3 791681 792811 D identified by match to protein family HMM PF01094; amino acid ABC transporter periplasmic-binding protein 791681..792811 Desulfovibrio vulgaris str. Hildenborough 2795408 YP_009934.1 CDS DVU0713 NC_002937.3 792889 793794 D identified by similarity to SP:P08340; match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease 792889..793794 Desulfovibrio vulgaris str. Hildenborough 2795409 YP_009935.1 CDS DVU0714 NC_002937.3 793791 794744 D identified by match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease 793791..794744 Desulfovibrio vulgaris str. Hildenborough 2795410 YP_009936.1 CDS DVU0715 NC_002937.3 794741 795508 D identified by similarity to SP:P22730; match to protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 794741..795508 Desulfovibrio vulgaris str. Hildenborough 2793614 YP_009937.1 CDS DVU0716 NC_002937.3 795522 796238 D identified by similarity to SP:P22731; match to protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 795522..796238 Desulfovibrio vulgaris str. Hildenborough 2793615 YP_009938.1 CDS DVU0717 NC_002937.3 796457 797965 R identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(796457..797965) Desulfovibrio vulgaris str. Hildenborough 2793616 YP_009939.1 CDS DVU0718 NC_002937.3 798061 798459 D identified by match to protein family HMM PF01527; ISDvu2, transposase OrfA 798061..798459 Desulfovibrio vulgaris str. Hildenborough 2793617 YP_009940.1 CDS DVU0719 NC_002937.3 798456 799298 D identified by match to protein family HMM PF00665; ISDvu2, transposase OrfB 798456..799298 Desulfovibrio vulgaris str. Hildenborough 2793618 YP_009941.1 CDS DVU0720 NC_002937.3 799261 800550 R identified by match to protein family HMM PF00672; HAMP domain-containing protein complement(799261..800550) Desulfovibrio vulgaris str. Hildenborough 2793619 YP_009942.1 CDS DVU0721 NC_002937.3 800645 803455 D identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 800645..803455 Desulfovibrio vulgaris str. Hildenborough 2793620 YP_009943.1 CDS DVU0722 NC_002937.3 803442 804998 D identified by match to protein family HMM PF00072; match to protein family HMM PF01966; response regulator 803442..804998 Desulfovibrio vulgaris str. Hildenborough 2793621 YP_009944.1 CDS purT NC_002937.3 805115 806296 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 805115..806296 Desulfovibrio vulgaris str. Hildenborough 2794128 YP_009945.1 CDS DVU0724 NC_002937.3 806523 807929 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium/alanine symporter family protein complement(806523..807929) Desulfovibrio vulgaris str. Hildenborough 2794129 YP_009946.1 CDS DVU0725 NC_002937.3 808323 810470 R identified by similarity to OMNI:NTL01MM0619; match to protein family HMM PF03190; hypothetical protein complement(808323..810470) Desulfovibrio vulgaris str. Hildenborough 2794130 YP_009947.1 CDS tgt NC_002937.3 810938 812065 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(810938..812065) Desulfovibrio vulgaris str. Hildenborough 2794131 YP_009948.1 CDS DVU0727 NC_002937.3 812110 812784 R identified by similarity to OMNI:NTL02AT2357; match to protein family HMM TIGR02117; hypothetical protein complement(812110..812784) Desulfovibrio vulgaris str. Hildenborough 2794132 YP_009949.1 CDS DVU0728 NC_002937.3 812813 812983 R hypothetical protein complement(812813..812983) Desulfovibrio vulgaris str. Hildenborough 2794133 YP_009950.1 CDS DVU0729 NC_002937.3 813205 813660 D hypothetical protein 813205..813660 Desulfovibrio vulgaris str. Hildenborough 2794134 YP_009951.1 CDS DVU0730 NC_002937.3 814050 815015 R identified by similarity to OMNI:NTL01TT1685; hypothetical protein complement(814050..815015) Desulfovibrio vulgaris str. Hildenborough 2794944 YP_009952.1 CDS DVU0731 NC_002937.3 815020 816381 R hypothetical protein complement(815020..816381) Desulfovibrio vulgaris str. Hildenborough 2794945 YP_009953.1 CDS valS NC_002937.3 816473 819127 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 816473..819127 Desulfovibrio vulgaris str. Hildenborough 2794946 YP_009954.1 CDS DVU0733 NC_002937.3 819244 819732 D identified by similarity to OMNI:NTL02MA2200; hypothetical protein 819244..819732 Desulfovibrio vulgaris str. Hildenborough 2794947 YP_009955.1 CDS DVU0734 NC_002937.3 819967 821478 D identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469; uroporphyrinogen III synthase/methyltransferase 819967..821478 Desulfovibrio vulgaris str. Hildenborough 2794948 YP_009956.1 CDS DVU0735 NC_002937.3 822186 822620 D identified by match to protein family HMM PF03473; MOSC domain-containing protein 822186..822620 Desulfovibrio vulgaris str. Hildenborough 2794949 YP_009957.1 CDS purN NC_002937.3 822647 823324 D identified by similarity to SP:P08179; match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 822647..823324 Desulfovibrio vulgaris str. Hildenborough 2794950 YP_009958.1 CDS DVU0737 NC_002937.3 823577 825817 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(823577..825817) Desulfovibrio vulgaris str. Hildenborough 2794951 YP_009959.1 CDS DVU0738 NC_002937.3 825817 826938 R identified by match to protein family HMM PF01094; ABC transporter substrate-binding protein complement(825817..826938) Desulfovibrio vulgaris str. Hildenborough 2795254 YP_009960.1 CDS DVU0739 NC_002937.3 827065 827637 D identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296; hypothetical protein 827065..827637 Desulfovibrio vulgaris str. Hildenborough 2795255 YP_009961.1 CDS DVU0740 NC_002937.3 827914 829089 D hypothetical protein 827914..829089 Desulfovibrio vulgaris str. Hildenborough 2795256 YP_009962.1 CDS DVU0741 NC_002937.3 829146 829622 D hypothetical protein 829146..829622 Desulfovibrio vulgaris str. Hildenborough 2795257 YP_009963.1 CDS DVU0742 NC_002937.3 829630 830466 D hypothetical protein 829630..830466 Desulfovibrio vulgaris str. Hildenborough 2795258 YP_009964.1 CDS DVU0743 NC_002937.3 830471 832468 D identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 830471..832468 Desulfovibrio vulgaris str. Hildenborough 2795259 YP_009965.1 CDS DVU0744 NC_002937.3 832468 834177 D identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 832468..834177 Desulfovibrio vulgaris str. Hildenborough 2795260 YP_009966.1 CDS DVU0745 NC_002937.3 834410 835228 D identified by similarity to GP:14330288; match to protein family HMM PF01547; ABC transporter periplasmic substrate-binding protein 834410..835228 Desulfovibrio vulgaris str. Hildenborough 2795261 YP_009967.1 CDS DVU0746 NC_002937.3 835639 836385 D identified by similarity to GP:20906056; match to protein family HMM PF00528; ABC transporter permease 835639..836385 Desulfovibrio vulgaris str. Hildenborough 2794964 YP_009968.1 CDS DVU0747 NC_002937.3 836382 837020 D identified by similarity to OMNI:CC1598; match to protein family HMM PF00005; ABC transporter ATP-binding protein 836382..837020 Desulfovibrio vulgaris str. Hildenborough 2794965 YP_009969.1 CDS acs NC_002937.3 837106 839052 R identified by similarity to SP:P27095; match to protein family HMM PF00501; acetyl-CoA synthetase complement(837106..839052) Desulfovibrio vulgaris str. Hildenborough 2794966 YP_009970.1 CDS DVU0749 NC_002937.3 839102 840031 R identified by match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator complement(839102..840031) Desulfovibrio vulgaris str. Hildenborough 2794967 YP_009971.1 CDS DVU0750 NC_002937.3 840322 842331 R identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(840322..842331) Desulfovibrio vulgaris str. Hildenborough 2794968 YP_009972.1 CDS DVU0751 NC_002937.3 842727 844517 R identified by similarity to OMNI:NTL03PA02202; similarity to OMNI:NTL03PA04194; match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease complement(842727..844517) Desulfovibrio vulgaris str. Hildenborough 2794969 YP_009973.1 CDS DVU0752 NC_002937.3 844606 845433 R identified by match to protein family HMM PF00497; amino acid ABC transporter amino acid-binding protein complement(844606..845433) Desulfovibrio vulgaris str. Hildenborough 2794970 YP_009974.1 CDS DVU0753 NC_002937.3 845531 846262 R identified by similarity to SP:P27675; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(845531..846262) Desulfovibrio vulgaris str. Hildenborough 2793592 YP_009975.1 CDS DVU0754 NC_002937.3 846259 846393 R hypothetical protein complement(846259..846393) Desulfovibrio vulgaris str. Hildenborough 2793593 YP_009976.1 CDS DVU0755 NC_002937.3 846505 847872 R identified by match to protein family HMM PF02518; sensor histidine kinase complement(846505..847872) Desulfovibrio vulgaris str. Hildenborough 2793594 YP_009977.1 CDS DVU0756 NC_002937.3 848084 848797 D identified by match to protein family HMM PF00515; hypothetical protein 848084..848797 Desulfovibrio vulgaris str. Hildenborough 2793595 YP_009978.1 CDS DVU0757 NC_002937.3 848797 849117 D hypothetical protein 848797..849117 Desulfovibrio vulgaris str. Hildenborough 2793596 YP_009979.1 CDS DVU0758 NC_002937.3 849322 849771 R hypothetical protein complement(849322..849771) Desulfovibrio vulgaris str. Hildenborough 2793597 YP_009980.1 CDS DVU0759 NC_002937.3 849749 850954 R identified by match to protein family HMM PF02073; M29 family peptidase complement(849749..850954) Desulfovibrio vulgaris str. Hildenborough 2793598 YP_009981.1 CDS DVU0760 NC_002937.3 851217 852347 R hypothetical protein complement(851217..852347) Desulfovibrio vulgaris str. Hildenborough 2793599 YP_009982.1 CDS DVU0761 NC_002937.3 852498 853088 R lipoprotein complement(852498..853088) Desulfovibrio vulgaris str. Hildenborough 2795565 YP_009983.1 CDS DVU0762 NC_002937.3 853114 853584 R identified by similarity to SP:Q8XBS4; hypothetical protein complement(853114..853584) Desulfovibrio vulgaris str. Hildenborough 2795566 YP_009984.1 CDS DVU0763 NC_002937.3 853682 854617 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 853682..854617 Desulfovibrio vulgaris str. Hildenborough 2795567 YP_009985.2 CDS hup-2 NC_002937.3 854707 855012 D identified by similarity to SP:P02341; similarity to SP:P02346; similarity to SP:P08821; similarity to SP:P15148; match to protein family HMM PF00216; DNA-binding protein HU 854707..855012 Desulfovibrio vulgaris str. Hildenborough 2795568 YP_009986.1 CDS DVU0765 NC_002937.3 855564 856928 R identified by similarity to SP:Q44472; match to protein family HMM PF05161; hydroxypyruvate reductase complement(855564..856928) Desulfovibrio vulgaris str. Hildenborough 2795569 YP_009987.1 CDS DVU0766 NC_002937.3 857127 857657 D identified by match to protein family HMM PF04972; transporter 857127..857657 Desulfovibrio vulgaris str. Hildenborough 2795570 YP_009988.1 CDS DVU0767 NC_002937.3 857778 858884 R identified by match to protein family HMM PF00266; class V aminotransferase complement(857778..858884) Desulfovibrio vulgaris str. Hildenborough 2795571 YP_009989.1 CDS murI NC_002937.3 858973 859821 R identified by similarity to SP:P94556; match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase complement(858973..859821) Desulfovibrio vulgaris str. Hildenborough 2795572 YP_009990.1 CDS DVU0769 NC_002937.3 859823 860701 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(859823..860701) Desulfovibrio vulgaris str. Hildenborough 2794840 YP_009991.1 CDS DVU0770 NC_002937.3 860983 861933 R identified by match to protein family HMM PF01925; hypothetical protein complement(860983..861933) Desulfovibrio vulgaris str. Hildenborough 2794841 YP_009992.1 CDS DVU0771 NC_002937.3 862088 863158 D identified by similarity to SP:P46930; similarity to OMNI:BR2031; match to protein family HMM PF00589; match to protein family HMM PF03459; match to protein family HMM TIGR00638; fused molybdenum-pterin binding domain-containing protein/site-specific recombinase phage integrase 862088..863158 Desulfovibrio vulgaris str. Hildenborough 2794842 YP_009993.1 CDS DVU0772 NC_002937.3 863400 863747 R hypothetical protein complement(863400..863747) Desulfovibrio vulgaris str. Hildenborough 2794843 YP_009994.1 CDS DVU0773 NC_002937.3 864023 864262 D hypothetical protein 864023..864262 Desulfovibrio vulgaris str. Hildenborough 2794844 YP_009995.1 CDS atpC NC_002937.3 864389 864793 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon complement(864389..864793) Desulfovibrio vulgaris str. Hildenborough 2794845 YP_009996.1 CDS atpD NC_002937.3 864805 866217 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(864805..866217) Desulfovibrio vulgaris str. Hildenborough 2794846 YP_009997.1 CDS atpG NC_002937.3 866236 867111 R produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(866236..867111) Desulfovibrio vulgaris str. Hildenborough 2794847 YP_009998.1 CDS atpA NC_002937.3 867128 868636 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(867128..868636) Desulfovibrio vulgaris str. Hildenborough 2794762 YP_009999.1 CDS atpH NC_002937.3 868641 869192 R produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(868641..869192) Desulfovibrio vulgaris str. Hildenborough 2794763 YP_010000.1 CDS DVU0779 NC_002937.3 869189 869719 R identified by similarity to SP:P20601; match to protein family HMM PF00430; ATP synthase F0 subunit B complement(869189..869719) Desulfovibrio vulgaris str. Hildenborough 2794764 YP_010001.1 CDS DVU0780 NC_002937.3 869792 870187 R identified by match to protein family HMM PF00430; ATP synthase F0 subunit B' complement(869792..870187) Desulfovibrio vulgaris str. Hildenborough 2794765 YP_010002.1 CDS DVU0781 NC_002937.3 870276 870446 D hypothetical protein 870276..870446 Desulfovibrio vulgaris str. Hildenborough 2794766 YP_010003.1 CDS DVU0782 NC_002937.3 870433 870552 D hypothetical protein 870433..870552 Desulfovibrio vulgaris str. Hildenborough 2794767 YP_010004.1 CDS DVU0783 NC_002937.3 870569 870715 D hypothetical protein 870569..870715 Desulfovibrio vulgaris str. Hildenborough 2794768 YP_010005.1 CDS DVU0784 NC_002937.3 870985 871332 R identified by similarity to OMNI:NTL01TT0780; match to protein family HMM PF04519; hypothetical protein complement(870985..871332) Desulfovibrio vulgaris str. Hildenborough 2794769 YP_010006.1 CDS rodA NC_002937.3 871370 872485 R identified by similarity to SP:P15035; match to protein family HMM PF01098; rod shape-determining protein RodA complement(871370..872485) Desulfovibrio vulgaris str. Hildenborough 2794810 YP_010007.1 CDS DVU0786 NC_002937.3 872482 874269 R identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein complement(872482..874269) Desulfovibrio vulgaris str. Hildenborough 2794811 YP_010008.1 CDS DVU0787 NC_002937.3 874253 874723 R hypothetical protein complement(874253..874723) Desulfovibrio vulgaris str. Hildenborough 2794812 YP_010009.1 CDS mreC NC_002937.3 874730 875644 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(874730..875644) Desulfovibrio vulgaris str. Hildenborough 2794813 YP_010010.1 CDS mreB-1 NC_002937.3 875646 876686 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(875646..876686) Desulfovibrio vulgaris str. Hildenborough 2794814 YP_010011.1 CDS DVU0790 NC_002937.3 876761 877816 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM family protein 876761..877816 Desulfovibrio vulgaris str. Hildenborough 2794815 YP_010012.1 CDS DVU0791 NC_002937.3 877891 878376 D identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated DNA-protein cysteine methyltransferase DNA binding subunit 877891..878376 Desulfovibrio vulgaris str. Hildenborough 2794816 YP_010013.1 CDS DVU0792 NC_002937.3 878370 878702 D hypothetical protein 878370..878702 Desulfovibrio vulgaris str. Hildenborough 2794513 YP_010014.1 CDS DVU0793 NC_002937.3 879217 879312 R hypothetical protein complement(879217..879312) Desulfovibrio vulgaris str. Hildenborough 2794515 YP_010015.1 CDS fabI NC_002937.3 879315 880079 R identified by similarity to SP:P29132; match to protein family HMM PF00106; enoyl-ACP reductase complement(879315..880079) Desulfovibrio vulgaris str. Hildenborough 2794516 YP_010016.1 CDS purC NC_002937.3 880193 881089 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(880193..881089) Desulfovibrio vulgaris str. Hildenborough 2794517 YP_010017.1 CDS hisD NC_002937.3 881106 882416 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(881106..882416) Desulfovibrio vulgaris str. Hildenborough 2794518 YP_010018.1 CDS DVU0797 NC_002937.3 882546 883976 R identified by similarity to GP:21899254; hypothetical protein complement(882546..883976) Desulfovibrio vulgaris str. Hildenborough 2794519 YP_010019.1 CDS DVU0798 NC_002937.3 884036 884131 R hypothetical protein complement(884036..884131) Desulfovibrio vulgaris str. Hildenborough 2795093 YP_010020.1 CDS DVU0799 NC_002937.3 884379 885779 R identified by similarity to GP:21899254; hypothetical protein complement(884379..885779) Desulfovibrio vulgaris str. Hildenborough 2795094 YP_010021.1 CDS DVU0800 NC_002937.3 885776 885982 R hypothetical protein complement(885776..885982) Desulfovibrio vulgaris str. Hildenborough 2795095 YP_010022.1 CDS uvrC NC_002937.3 886202 888310 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 886202..888310 Desulfovibrio vulgaris str. Hildenborough 2795096 YP_010023.1 CDS DVU0802 NC_002937.3 888398 888514 D hypothetical protein 888398..888514 Desulfovibrio vulgaris str. Hildenborough 2795097 YP_010024.1 CDS DVU0803 NC_002937.3 888532 889797 D identified by similarity to GP:21107427; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 888532..889797 Desulfovibrio vulgaris str. Hildenborough 2795098 YP_010025.1 CDS DVU0804 NC_002937.3 889782 891254 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 889782..891254 Desulfovibrio vulgaris str. Hildenborough 2795099 YP_010026.1 CDS DVU0805 NC_002937.3 891422 891718 D hypothetical protein 891422..891718 Desulfovibrio vulgaris str. Hildenborough 2795100 YP_010027.1 CDS DVU0806 NC_002937.3 891715 892125 D identified by similarity to GP:3493638; match to protein family HMM PF00072; chemotaxis protein CheY 891715..892125 Desulfovibrio vulgaris str. Hildenborough 2796529 YP_010028.1 CDS trmU NC_002937.3 892395 893435 R identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase complement(892395..893435) Desulfovibrio vulgaris str. Hildenborough 2796530 YP_010029.1 CDS gatA NC_002937.3 893450 894919 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(893450..894919) Desulfovibrio vulgaris str. Hildenborough 2796531 YP_010030.1 CDS gatC NC_002937.3 894941 895225 R identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135; glutamyl-tRNA(Gln) amidotransferase subunit C complement(894941..895225) Desulfovibrio vulgaris str. Hildenborough 2796532 YP_010031.1 CDS DVU0810 NC_002937.3 895245 897305 R hypothetical protein complement(895245..897305) Desulfovibrio vulgaris str. Hildenborough 2796533 YP_010032.1 CDS dnaK NC_002937.3 897365 899275 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(897365..899275) Desulfovibrio vulgaris str. Hildenborough 2796534 YP_010033.1 CDS grpE NC_002937.3 899494 900069 R identified by similarity to SP:P15874; match to protein family HMM PF01025; heat shock protein GrpE complement(899494..900069) Desulfovibrio vulgaris str. Hildenborough 2796535 YP_010034.1 CDS hrcA NC_002937.3 900335 901402 R identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA complement(900335..901402) Desulfovibrio vulgaris str. Hildenborough 2795016 YP_010035.2 CDS DVU0814 NC_002937.3 901535 902020 R identified by similarity to SP:P23480; match to protein family HMM PF00578; bacterioferritin comigratory protein complement(901535..902020) Desulfovibrio vulgaris str. Hildenborough 2795017 YP_010036.1 CDS DVU0815 NC_002937.3 902205 904310 R identified by similarity to SP:P28249; match to protein family HMM PF05170; AsmA family protein complement(902205..904310) Desulfovibrio vulgaris str. Hildenborough 2795018 YP_010037.1 CDS cobQ NC_002937.3 904464 906095 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 904464..906095 Desulfovibrio vulgaris str. Hildenborough 2795019 YP_010038.1 CDS DVU0817 NC_002937.3 906158 906625 R hypothetical protein complement(906158..906625) Desulfovibrio vulgaris str. Hildenborough 2795020 YP_010039.1 CDS DVU0818 NC_002937.3 906828 908576 D identified by similarity to GP:27359550; hypothetical protein 906828..908576 Desulfovibrio vulgaris str. Hildenborough 2795021 YP_010040.1 CDS DVU0819 NC_002937.3 908890 909507 R identified by match to protein family HMM PF03358; FMN reductase, NADPH-dependent complement(908890..909507) Desulfovibrio vulgaris str. Hildenborough 2795022 YP_010041.1 CDS DVU0820 NC_002937.3 909804 909923 D hypothetical protein 909804..909923 Desulfovibrio vulgaris str. Hildenborough 2795023 YP_010042.1 CDS DVU0821 NC_002937.3 909911 910510 R identified by similarity to OMNI:NT01MC2073; hypothetical protein complement(909911..910510) Desulfovibrio vulgaris str. Hildenborough 2796167 YP_010043.1 CDS DVU0822 NC_002937.3 910522 911178 R hypothetical protein complement(910522..911178) Desulfovibrio vulgaris str. Hildenborough 2796168 YP_010044.1 CDS argJ NC_002937.3 911585 912766 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(911585..912766) Desulfovibrio vulgaris str. Hildenborough 2796170 YP_010045.1 CDS DVU0824 NC_002937.3 912765 912977 D hypothetical protein 912765..912977 Desulfovibrio vulgaris str. Hildenborough 2796171 YP_010046.1 CDS secA NC_002937.3 913045 915546 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(913045..915546) Desulfovibrio vulgaris str. Hildenborough 2796172 YP_010047.1 CDS DVU0826 NC_002937.3 915709 917031 R identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754; glycolate oxidase, iron-sulfur subunit complement(915709..917031) Desulfovibrio vulgaris str. Hildenborough 2796173 YP_010048.1 CDS DVU0827 NC_002937.3 917179 918594 R identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD complement(917179..918594) Desulfovibrio vulgaris str. Hildenborough 2796174 YP_010049.1 CDS smpB NC_002937.3 918623 919087 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(918623..919087) Desulfovibrio vulgaris str. Hildenborough 2795492 YP_010050.1 CDS ptsI NC_002937.3 919099 920871 R identified by similarity to SP:P08838; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase complement(919099..920871) Desulfovibrio vulgaris str. Hildenborough 2795493 YP_010051.1 CDS ptsH NC_002937.3 920882 921142 R identified by similarity to SP:P07006; match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr complement(920882..921142) Desulfovibrio vulgaris str. Hildenborough 2795494 YP_010052.1 CDS DVU0831 NC_002937.3 921203 921961 R identified by similarity to SP:P26382; PTS system transporter subunit IID complement(921203..921961) Desulfovibrio vulgaris str. Hildenborough 2795495 YP_010053.1 CDS DVU0832 NC_002937.3 922377 923204 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase complement(922377..923204) Desulfovibrio vulgaris str. Hildenborough 2795496 YP_010054.1 CDS DVU0833 NC_002937.3 923146 923550 R identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein complement(923146..923550) Desulfovibrio vulgaris str. Hildenborough 2795497 YP_010055.1 CDS rnhB NC_002937.3 923544 924206 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(923544..924206) Desulfovibrio vulgaris str. Hildenborough 2795498 YP_010056.1 CDS rplS NC_002937.3 924557 924904 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(924557..924904) Desulfovibrio vulgaris str. Hildenborough 2795499 YP_010057.1 CDS trmD NC_002937.3 924958 926235 R identified by similarity to SP:P07020; match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase complement(924958..926235) Desulfovibrio vulgaris str. Hildenborough 2794848 YP_010058.1 CDS rimM NC_002937.3 926250 926780 R identified by match to protein family HMM PF01782; match to protein family HMM PF05239; 16S rRNA processing protein RimM complement(926250..926780) Desulfovibrio vulgaris str. Hildenborough 2794849 YP_010059.1 CDS DVU0838 NC_002937.3 926804 927037 R identified by similarity to SP:Q8XJP5; hypothetical protein complement(926804..927037) Desulfovibrio vulgaris str. Hildenborough 2794850 YP_010060.1 CDS rpsP NC_002937.3 927121 927360 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(927121..927360) Desulfovibrio vulgaris str. Hildenborough 2794851 YP_010061.1 CDS ffh NC_002937.3 927439 928965 R identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(927439..928965) Desulfovibrio vulgaris str. Hildenborough 2794852 YP_010062.1 CDS DVU0841 NC_002937.3 929194 930375 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(929194..930375) Desulfovibrio vulgaris str. Hildenborough 2794853 YP_010063.1 CDS DVU0842 NC_002937.3 930484 930714 R hypothetical protein complement(930484..930714) Desulfovibrio vulgaris str. Hildenborough 2794854 YP_010064.2 CDS DVU0843 NC_002937.3 930704 932302 R hypothetical protein complement(930704..932302) Desulfovibrio vulgaris str. Hildenborough 2795194 YP_010066.1 CDS DVU0845 NC_002937.3 932782 933042 R hypothetical protein complement(932782..933042) Desulfovibrio vulgaris str. Hildenborough 2795196 YP_010067.1 CDS aprB NC_002937.3 933076 933579 D identified by similarity to GP:7109234; match to protein family HMM PF00037; match to protein family HMM TIGR02060; adenylylsulfate reductase subunit beta 933076..933579 Desulfovibrio vulgaris str. Hildenborough 2795197 YP_010068.1 CDS aprA NC_002937.3 933621 935615 D catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 933621..935615 Desulfovibrio vulgaris str. Hildenborough 2795198 YP_010069.1 CDS DVU0848 NC_002937.3 935761 936999 D identified by similarity to GP:1890204; heterodisulfide reductase 935761..936999 Desulfovibrio vulgaris str. Hildenborough 2795199 YP_010070.1 CDS DVU0849 NC_002937.3 937006 939282 D identified by match to protein family HMM PF00037; match to protein family HMM PF02662; heterodisulfide reductase, iron-sulfur-binding subunit 937006..939282 Desulfovibrio vulgaris str. Hildenborough 2795200 YP_010071.1 CDS DVU0850 NC_002937.3 939296 940450 D identified by match to protein family HMM PF00037; heterodisulfide reductase, transmembrane subunit 939296..940450 Desulfovibrio vulgaris str. Hildenborough 2795201 YP_010072.1 CDS DVU0851 NC_002937.3 940540 941286 D hypothetical protein 940540..941286 Desulfovibrio vulgaris str. Hildenborough 2794180 YP_010073.1 CDS DVU0852 NC_002937.3 941500 942297 D extracellular solute-binding protein 941500..942297 Desulfovibrio vulgaris str. Hildenborough 2794181 YP_010074.1 CDS DVU0853 NC_002937.3 942353 943624 R identified by similarity to OMNI:NTL02SC3149; match to protein family HMM PF01139; hypothetical protein complement(942353..943624) Desulfovibrio vulgaris str. Hildenborough 2794182 YP_010075.1 CDS DVU0854 NC_002937.3 944038 944568 R identified by similarity to SP:Q52522; NirD protein complement(944038..944568) Desulfovibrio vulgaris str. Hildenborough 2794183 YP_010076.1 CDS DVU0855 NC_002937.3 944578 945681 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(944578..945681) Desulfovibrio vulgaris str. Hildenborough 2794184 YP_010077.1 CDS hemB NC_002937.3 945759 946751 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(945759..946751) Desulfovibrio vulgaris str. Hildenborough 2794185 YP_010078.1 CDS DVU0857 NC_002937.3 946761 947942 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(946761..947942) Desulfovibrio vulgaris str. Hildenborough 2794186 YP_010079.1 CDS DVU0858 NC_002937.3 948258 948941 R lipoprotein complement(948258..948941) Desulfovibrio vulgaris str. Hildenborough 2794187 YP_010080.1 CDS DVU0859 NC_002937.3 949376 950851 R hypothetical protein complement(949376..950851) Desulfovibrio vulgaris str. Hildenborough 2794188 YP_003858607.1 CDS DVU4019 NC_002937.3 950733 952319 R hypothetical protein complement(950733..952319) Desulfovibrio vulgaris str. Hildenborough 9714856 YP_010082.1 CDS DVU0861 NC_002937.3 952490 953608 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(952490..953608) Desulfovibrio vulgaris str. Hildenborough 2796158 YP_010083.1 CDS DVU0862 NC_002937.3 953768 954673 R identified by similarity to SP:P26608; match to protein family HMM PF02561; match to protein family HMM TIGR00208; bifunctional flagellar protein FliS/hypothetical protein complement(953768..954673) Desulfovibrio vulgaris str. Hildenborough 2796159 YP_010084.1 CDS DVU0863 NC_002937.3 954684 956411 R identified by similarity to SP:P24216; match to protein family HMM PF02465; flagellar hook-associated protein 2 complement(954684..956411) Desulfovibrio vulgaris str. Hildenborough 2796160 YP_010085.1 CDS DVU0864 NC_002937.3 956549 957334 R identified by match to protein family HMM PF00814; glycoprotease complement(956549..957334) Desulfovibrio vulgaris str. Hildenborough 2796161 YP_010086.1 CDS DVU0865 NC_002937.3 957331 958395 R identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease complement(957331..958395) Desulfovibrio vulgaris str. Hildenborough 2796162 YP_010087.1 CDS dxr NC_002937.3 958392 959618 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(958392..959618) Desulfovibrio vulgaris str. Hildenborough 2796163 YP_010088.1 CDS DVU0867 NC_002937.3 959615 961108 R identified by similarity to GP:6900962; match to protein family HMM PF00282; aromatic amino acid decarboxylase complement(959615..961108) Desulfovibrio vulgaris str. Hildenborough 2796164 YP_010089.1 CDS cdsA NC_002937.3 961117 961923 R identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(961117..961923) Desulfovibrio vulgaris str. Hildenborough 2795167 YP_010090.1 CDS uppS NC_002937.3 961920 962663 R identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; UDP diphosphate synthase complement(961920..962663) Desulfovibrio vulgaris str. Hildenborough 2795168 YP_010091.1 CDS frr NC_002937.3 962781 963341 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(962781..963341) Desulfovibrio vulgaris str. Hildenborough 2795169 YP_010092.1 CDS pyrH NC_002937.3 963345 964061 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(963345..964061) Desulfovibrio vulgaris str. Hildenborough 2795170 YP_010093.1 CDS DVU0872 NC_002937.3 964110 964877 R identified by similarity to GP:19423800; match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(964110..964877) Desulfovibrio vulgaris str. Hildenborough 2795171 YP_010094.1 CDS tsf NC_002937.3 965140 966003 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(965140..966003) Desulfovibrio vulgaris str. Hildenborough 2795172 YP_010095.1 CDS rpsB NC_002937.3 966030 966794 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(966030..966794) Desulfovibrio vulgaris str. Hildenborough 2795173 YP_010096.1 CDS DVU0875 NC_002937.3 967141 967920 R identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase complement(967141..967920) Desulfovibrio vulgaris str. Hildenborough 2795174 YP_010097.1 CDS DVU0876 NC_002937.3 967948 969612 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(967948..969612) Desulfovibrio vulgaris str. Hildenborough 2795130 YP_010098.1 CDS DVU0877 NC_002937.3 969620 969763 R hypothetical protein complement(969620..969763) Desulfovibrio vulgaris str. Hildenborough 2795131 YP_010099.1 CDS DVU0878 NC_002937.3 970085 970441 R identified by similarity to SP:P18274; match to protein family HMM PF01258; dnaK suppressor protein complement(970085..970441) Desulfovibrio vulgaris str. Hildenborough 2795132 YP_010100.1 CDS DVU0879 NC_002937.3 970438 970575 R hypothetical protein complement(970438..970575) Desulfovibrio vulgaris str. Hildenborough 2795133 YP_010101.1 CDS DVU0880 NC_002937.3 970692 971081 R hypothetical protein complement(970692..971081) Desulfovibrio vulgaris str. Hildenborough 2795134 YP_010102.1 CDS fusA NC_002937.3 971471 973537 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(971471..973537) Desulfovibrio vulgaris str. Hildenborough 2795135 YP_010103.1 CDS DVU0882 NC_002937.3 973743 974207 D hypothetical protein 973743..974207 Desulfovibrio vulgaris str. Hildenborough 2795136 YP_010104.1 CDS DVU0883 NC_002937.3 974481 974738 D identified by match to protein family HMM PF00462; glutaredoxin 974481..974738 Desulfovibrio vulgaris str. Hildenborough 2795137 YP_010105.1 CDS DVU0884 NC_002937.3 974735 975079 D identified by similarity to GP:2649026; hypothetical protein 974735..975079 Desulfovibrio vulgaris str. Hildenborough 2794196 YP_010106.1 CDS DVU0885 NC_002937.3 975521 976309 R identified by match to protein family HMM PF04909; amidohydrolase complement(975521..976309) Desulfovibrio vulgaris str. Hildenborough 2794197 YP_010107.1 CDS DVU0886 NC_002937.3 976360 976770 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase complement(976360..976770) Desulfovibrio vulgaris str. Hildenborough 2794198 YP_010108.1 CDS DVU0887 NC_002937.3 976825 978099 D identified by similarity to OMNI:PP4971; match to protein family HMM PF03562; transglycosylase 976825..978099 Desulfovibrio vulgaris str. Hildenborough 2794199 YP_010109.1 CDS DVU0888 NC_002937.3 978190 979902 D identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; response regulator 978190..979902 Desulfovibrio vulgaris str. Hildenborough 2794200 YP_010110.1 CDS DVU0889 NC_002937.3 979998 981137 R identified by match to protein family HMM PF01676; phosphonopyruvate decarboxylase-like protein complement(979998..981137) Desulfovibrio vulgaris str. Hildenborough 2794201 YP_010111.1 CDS hom NC_002937.3 981134 982408 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(981134..982408) Desulfovibrio vulgaris str. Hildenborough 2794202 YP_010112.1 CDS DVU0891 NC_002937.3 982410 983603 R identified by match to protein family HMM PF00155; class I/II aminotransferase complement(982410..983603) Desulfovibrio vulgaris str. Hildenborough 2794203 YP_010113.1 CDS aroL NC_002937.3 983727 984254 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 983727..984254 Desulfovibrio vulgaris str. Hildenborough 2794204 YP_010114.1 CDS DVU0893 NC_002937.3 984283 984765 D identified by match to protein family HMM PF00582; universal stress protein 984283..984765 Desulfovibrio vulgaris str. Hildenborough 2794111 YP_010115.1 CDS aroC NC_002937.3 984956 986020 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 984956..986020 Desulfovibrio vulgaris str. Hildenborough 2794112 YP_010116.1 CDS DVU0895 NC_002937.3 986193 988421 D identified by match to protein family HMM TIGR01448; recombinase D 986193..988421 Desulfovibrio vulgaris str. Hildenborough 2794113 YP_010117.1 CDS DVU0896 NC_002937.3 988431 989825 D identified by match to protein family HMM PF00877; NLP/P60 family lipoprotein 988431..989825 Desulfovibrio vulgaris str. Hildenborough 2794114 YP_010118.1 CDS DVU0897 NC_002937.3 989827 991203 D identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; RNA modification protein 989827..991203 Desulfovibrio vulgaris str. Hildenborough 2794115 YP_010119.1 CDS DVU0898 NC_002937.3 991288 992169 D identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255; hypothetical protein 991288..992169 Desulfovibrio vulgaris str. Hildenborough 2794116 YP_010120.1 CDS DVU0899 NC_002937.3 992166 992426 D identified by similarity to OMNI:NTL01BH2516; match to protein family HMM PF04025; hypothetical protein 992166..992426 Desulfovibrio vulgaris str. Hildenborough 2794117 YP_010121.1 CDS gmk NC_002937.3 992426 993049 D identified by similarity to SP:P24234; match to protein family HMM PF00625; guanylate kinase 992426..993049 Desulfovibrio vulgaris str. Hildenborough 2794118 YP_010122.1 CDS pyrF NC_002937.3 993049 993756 D identified by similarity to SP:Q59654; match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 993049..993756 Desulfovibrio vulgaris str. Hildenborough 2795411 YP_010123.1 CDS DVU0902 NC_002937.3 993889 994746 D identified by match to protein family HMM PF00515; hypothetical protein 993889..994746 Desulfovibrio vulgaris str. Hildenborough 2795412 YP_010124.1 CDS DVU0903 NC_002937.3 994751 995608 D identified by similarity to GP:21107347; match to protein family HMM PF01966; HD domain-containing protein 994751..995608 Desulfovibrio vulgaris str. Hildenborough 2795413 YP_010125.1 CDS recJ NC_002937.3 995665 997380 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 995665..997380 Desulfovibrio vulgaris str. Hildenborough 2795414 YP_010126.1 CDS lipA NC_002937.3 997479 998375 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(997479..998375) Desulfovibrio vulgaris str. Hildenborough 2795415 YP_010127.1 CDS lipB NC_002937.3 998305 998961 R identified by similarity to SP:P30976; match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoate-protein ligase B complement(998305..998961) Desulfovibrio vulgaris str. Hildenborough 2795416 YP_010128.1 CDS DVU0907 NC_002937.3 998948 1001887 R identified by similarity to OMNI:NTL01BM0443; hypothetical protein complement(998948..1001887) Desulfovibrio vulgaris str. Hildenborough 2795417 YP_010129.1 CDS DVU0908 NC_002937.3 1001899 1003530 R iron-sulfur cluster-binding protein complement(1001899..1003530) Desulfovibrio vulgaris str. Hildenborough 2795418 YP_010130.1 CDS DVU0909 NC_002937.3 1003696 1004091 D hypothetical protein 1003696..1004091 Desulfovibrio vulgaris str. Hildenborough 2794662 YP_010131.1 CDS fliM NC_002937.3 1004227 1005207 D identified by similarity to SP:P06974; match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397; flagellar motor switch protein FliM 1004227..1005207 Desulfovibrio vulgaris str. Hildenborough 2794663 YP_010132.1 CDS truA NC_002937.3 1005807 1006700 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1005807..1006700) Desulfovibrio vulgaris str. Hildenborough 2794664 YP_010133.1 CDS DVU0912 NC_002937.3 1006702 1007286 R hypothetical protein complement(1006702..1007286) Desulfovibrio vulgaris str. Hildenborough 2794665 YP_010134.1 CDS DVU0913 NC_002937.3 1007363 1007800 R identified by similarity to OMNI:TM0512; hypothetical protein complement(1007363..1007800) Desulfovibrio vulgaris str. Hildenborough 2794666 YP_010135.1 CDS cobS NC_002937.3 1007871 1008608 R identified by similarity to SP:P36561; match to protein family HMM PF02654; cobalamin-5-phosphate synthase complement(1007871..1008608) Desulfovibrio vulgaris str. Hildenborough 2794667 YP_010136.1 CDS DVU0915 NC_002937.3 1008987 1009775 R identified by similarity to OMNI:CT1550; match to protein family HMM PF01887; hypothetical protein complement(1008987..1009775) Desulfovibrio vulgaris str. Hildenborough 2794668 YP_010137.1 CDS DVU0916 NC_002937.3 1009809 1010453 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(1009809..1010453) Desulfovibrio vulgaris str. Hildenborough 2794669 YP_010138.1 CDS atpE NC_002937.3 1010558 1010806 R identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase F0 subunit C complement(1010558..1010806) Desulfovibrio vulgaris str. Hildenborough 2794670 YP_010139.1 CDS atpB NC_002937.3 1010942 1011643 R identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131; ATP synthase F0 subunit A complement(1010942..1011643) Desulfovibrio vulgaris str. Hildenborough 2794254 YP_010140.1 CDS DVU0919 NC_002937.3 1011648 1012082 R hypothetical protein complement(1011648..1012082) Desulfovibrio vulgaris str. Hildenborough 2794255 YP_010141.1 CDS atpI NC_002937.3 1012051 1012455 R identified by similarity to SP:P15011; ATP synthase I complement(1012051..1012455) Desulfovibrio vulgaris str. Hildenborough 2794256 YP_010142.1 CDS DVU0921 NC_002937.3 1012517 1012984 D identified by similarity to GP:435265; 5-nitroimidazole antibiotic resistance protein 1012517..1012984 Desulfovibrio vulgaris str. Hildenborough 2794257 YP_010143.1 CDS DVU0922 NC_002937.3 1013027 1013584 R cytochrome c family protein complement(1013027..1013584) Desulfovibrio vulgaris str. Hildenborough 2794258 YP_010144.1 CDS DVU0923 NC_002937.3 1014066 1014464 R identified by match to protein family HMM PF01042; L-PSP family endoribonuclease complement(1014066..1014464) Desulfovibrio vulgaris str. Hildenborough 2794259 YP_010145.1 CDS rumA NC_002937.3 1014520 1015926 R identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA complement(1014520..1015926) Desulfovibrio vulgaris str. Hildenborough 2794260 YP_010146.1 CDS rfbA NC_002937.3 1016369 1017277 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase complement(1016369..1017277) Desulfovibrio vulgaris str. Hildenborough 2794261 YP_010147.1 CDS DVU0926 NC_002937.3 1017547 1017738 R hypothetical protein complement(1017547..1017738) Desulfovibrio vulgaris str. Hildenborough 2794626 YP_010148.1 CDS rplU NC_002937.3 1017855 1018163 D identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 1017855..1018163 Desulfovibrio vulgaris str. Hildenborough 2794627 YP_010149.1 CDS rpmA NC_002937.3 1018184 1018447 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1018184..1018447 Desulfovibrio vulgaris str. Hildenborough 2794628 YP_010150.1 CDS obgE NC_002937.3 1018596 1019696 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1018596..1019696 Desulfovibrio vulgaris str. Hildenborough 2794629 YP_010151.1 CDS proB NC_002937.3 1019714 1020856 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1019714..1020856 Desulfovibrio vulgaris str. Hildenborough 2794630 YP_010152.1 CDS thiD NC_002937.3 1020935 1021741 D identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 1020935..1021741 Desulfovibrio vulgaris str. Hildenborough 2794631 YP_010153.1 CDS DVU0932 NC_002937.3 1022374 1023549 D identified by match to protein family HMM PF02518; sensor histidine kinase 1022374..1023549 Desulfovibrio vulgaris str. Hildenborough 2794632 YP_010154.1 CDS DVU0933 NC_002937.3 1023539 1024783 D identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM TIGR00229; response regulator 1023539..1024783 Desulfovibrio vulgaris str. Hildenborough 2794633 YP_010155.1 CDS DVU0934 NC_002937.3 1024764 1025024 D hypothetical protein 1024764..1025024 Desulfovibrio vulgaris str. Hildenborough 2794608 YP_010156.1 CDS DVU0935 NC_002937.3 1025021 1027525 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1025021..1027525 Desulfovibrio vulgaris str. Hildenborough 2794609 YP_010157.1 CDS DVU0936 NC_002937.3 1028071 1028445 D hypothetical protein 1028071..1028445 Desulfovibrio vulgaris str. Hildenborough 2794610 YP_010158.1 CDS DVU0937 NC_002937.3 1028459 1028845 D hypothetical protein 1028459..1028845 Desulfovibrio vulgaris str. Hildenborough 2794611 YP_010159.1 CDS DVU0938 NC_002937.3 1028909 1029277 D isoamylase N-terminal domain-containing protein 1028909..1029277 Desulfovibrio vulgaris str. Hildenborough 2794612 YP_010160.1 CDS DVU0939 NC_002937.3 1029677 1030426 D identified by similarity to GP:6978033; hypothetical protein 1029677..1030426 Desulfovibrio vulgaris str. Hildenborough 2794613 YP_010161.1 CDS DVU0940 NC_002937.3 1030439 1031170 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1030439..1031170 Desulfovibrio vulgaris str. Hildenborough 2794614 YP_010162.1 CDS DVU0941 NC_002937.3 1031522 1034416 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 1031522..1034416 Desulfovibrio vulgaris str. Hildenborough 2794615 YP_010163.1 CDS DVU0942 NC_002937.3 1034493 1034927 D identified by match to protein family HMM PF01475; Fur family transcriptional regulator 1034493..1034927 Desulfovibrio vulgaris str. Hildenborough 2794616 YP_010164.1 CDS DVU0943 NC_002937.3 1035361 1037160 D hypothetical protein 1035361..1037160 Desulfovibrio vulgaris str. Hildenborough 2794587 YP_010165.1 CDS DVU0944 NC_002937.3 1037214 1037471 D hypothetical protein 1037214..1037471 Desulfovibrio vulgaris str. Hildenborough 2794588 YP_010166.1 CDS DVU0945 NC_002937.3 1037557 1039989 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1037557..1039989 Desulfovibrio vulgaris str. Hildenborough 2794589 YP_010167.1 CDS DVU0946 NC_002937.3 1039992 1041422 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 1039992..1041422 Desulfovibrio vulgaris str. Hildenborough 2794590 YP_010168.1 CDS DVU0947 NC_002937.3 1041478 1042383 R identified by match to protein family HMM PF00892; hypothetical protein complement(1041478..1042383) Desulfovibrio vulgaris str. Hildenborough 2794591 YP_010169.1 CDS DVU0948 NC_002937.3 1042559 1042987 R hypothetical protein complement(1042559..1042987) Desulfovibrio vulgaris str. Hildenborough 2794592 YP_010170.1 CDS DVU0949 NC_002937.3 1043035 1043796 R identified by similarity to OMNI:NMB1475; hypothetical protein complement(1043035..1043796) Desulfovibrio vulgaris str. Hildenborough 2794593 YP_010171.1 CDS DVU0950 NC_002937.3 1043812 1043928 D hypothetical protein 1043812..1043928 Desulfovibrio vulgaris str. Hildenborough 2794594 YP_010172.1 CDS DVU0951 NC_002937.3 1043957 1045294 D identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein 1043957..1045294 Desulfovibrio vulgaris str. Hildenborough 2794595 YP_010173.1 CDS DVU0952 NC_002937.3 1045296 1046168 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein 1045296..1046168 Desulfovibrio vulgaris str. Hildenborough 2795148 YP_010174.1 CDS tyrS NC_002937.3 1046362 1047558 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1046362..1047558 Desulfovibrio vulgaris str. Hildenborough 2795149 YP_010175.1 CDS DVU0954 NC_002937.3 1047731 1050025 R identified by similarity to SP:P31554; organic solvent tolerance protein complement(1047731..1050025) Desulfovibrio vulgaris str. Hildenborough 2795150 YP_010176.1 CDS alr NC_002937.3 1050212 1051342 D identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 1050212..1051342 Desulfovibrio vulgaris str. Hildenborough 2795151 YP_010177.1 CDS rpsF NC_002937.3 1051480 1051785 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1051480..1051785 Desulfovibrio vulgaris str. Hildenborough 2795152 YP_010178.1 CDS rpsR NC_002937.3 1051786 1052049 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1051786..1052049 Desulfovibrio vulgaris str. Hildenborough 2795153 YP_010179.1 CDS rplI NC_002937.3 1052062 1052565 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1052062..1052565 Desulfovibrio vulgaris str. Hildenborough 2795154 YP_010180.1 CDS dnaB NC_002937.3 1052516 1053997 D identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 1052516..1053997 Desulfovibrio vulgaris str. Hildenborough 2795155 YP_010181.1 CDS DVU0960 NC_002937.3 1054031 1054219 R hypothetical protein complement(1054031..1054219) Desulfovibrio vulgaris str. Hildenborough 2795156 YP_010182.1 CDS DVU0961 NC_002937.3 1054399 1058463 R identified by similarity to OMNI:NTL01RS0896; hypothetical protein complement(1054399..1058463) Desulfovibrio vulgaris str. Hildenborough 2794464 YP_010183.1 CDS DVU0962 NC_002937.3 1058460 1058576 R hypothetical protein complement(1058460..1058576) Desulfovibrio vulgaris str. Hildenborough 2794465 YP_010184.1 CDS DVU0963 NC_002937.3 1058925 1059422 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1058925..1059422) Desulfovibrio vulgaris str. Hildenborough 2794466 YP_010185.1 CDS DVU0964 NC_002937.3 1059674 1062667 D identified by match to protein family HMM PF00208; Glu/Leu/Phe/Val dehydrogenase 1059674..1062667 Desulfovibrio vulgaris str. Hildenborough 2794467 YP_010186.1 CDS DVU0965 NC_002937.3 1062907 1063083 D hypothetical protein 1062907..1063083 Desulfovibrio vulgaris str. Hildenborough 2794468 YP_010187.1 CDS DVU0966 NC_002937.3 1063178 1063996 D identified by match to protein family HMM PF00497; amino acid ABC transporter periplasmic amino acid-binding protein 1063178..1063996 Desulfovibrio vulgaris str. Hildenborough 2794469 YP_010188.1 CDS DVU0967 NC_002937.3 1064266 1065279 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1064266..1065279 Desulfovibrio vulgaris str. Hildenborough 2794470 YP_010189.1 CDS DVU0968 NC_002937.3 1065276 1066016 D identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 1065276..1066016 Desulfovibrio vulgaris str. Hildenborough 2796144 YP_010190.1 CDS DVU0969 NC_002937.3 1066264 1067010 D identified by similarity to OMNI:CC0456; match to protein family HMM PF01810; amino acid transporter LysE 1066264..1067010 Desulfovibrio vulgaris str. Hildenborough 2794471 YP_010191.1 CDS DVU0970 NC_002937.3 1067013 1067552 D lipoprotein 1067013..1067552 Desulfovibrio vulgaris str. Hildenborough 2794472 YP_010192.2 CDS DVU0971 NC_002937.3 1067552 1068331 D identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein 1067552..1068331 Desulfovibrio vulgaris str. Hildenborough 2795103 YP_010193.1 CDS DVU0972 NC_002937.3 1068370 1069635 D identified by match to protein family HMM PF01966; HD domain-containing protein 1068370..1069635 Desulfovibrio vulgaris str. Hildenborough 2795104 YP_010194.1 CDS DVU0973 NC_002937.3 1069632 1070501 D identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475; 4-hydroxybenzoate octaprenyltransferase 1069632..1070501 Desulfovibrio vulgaris str. Hildenborough 2795105 YP_010195.1 CDS DVU0974 NC_002937.3 1070600 1070938 D hypothetical protein 1070600..1070938 Desulfovibrio vulgaris str. Hildenborough 2795106 YP_010196.1 CDS DVU0975 NC_002937.3 1070971 1071531 D identified by similarity to SP:P26650; match to protein family HMM PF04751; hypothetical protein 1070971..1071531 Desulfovibrio vulgaris str. Hildenborough 2795107 YP_010197.1 CDS DVU0976 NC_002937.3 1071674 1072837 R identified by match to protein family HMM PF00072; response regulator complement(1071674..1072837) Desulfovibrio vulgaris str. Hildenborough 2795108 YP_010198.1 CDS DVU0977 NC_002937.3 1072913 1073062 D hypothetical protein 1072913..1073062 Desulfovibrio vulgaris str. Hildenborough 2795109 YP_010199.1 CDS DVU0978 NC_002937.3 1073542 1074396 D identified by similarity to GP:14330288; ABC transporter periplasmic substrate-binding protein 1073542..1074396 Desulfovibrio vulgaris str. Hildenborough 2795110 YP_010200.1 CDS DVU0979 NC_002937.3 1074581 1075645 D with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 1074581..1075645 Desulfovibrio vulgaris str. Hildenborough 2795111 YP_010201.1 CDS DVU0980 NC_002937.3 1075824 1076456 D identified by match to protein family HMM PF02734; DAK2 domain-containing protein 1075824..1076456 Desulfovibrio vulgaris str. Hildenborough 2793322 YP_010202.1 CDS DVU0981 NC_002937.3 1076460 1079024 D identified by similarity to SP:P23388; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF03610; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417; multiphosphoryl transfer protein 1076460..1079024 Desulfovibrio vulgaris str. Hildenborough 2793323 YP_010203.1 CDS DVU0982 NC_002937.3 1079062 1079721 R identified by match to protein family HMM PF02231; match to protein family HMM PF02811; hypothetical protein complement(1079062..1079721) Desulfovibrio vulgaris str. Hildenborough 2793324 YP_010204.1 CDS DVU0983 NC_002937.3 1079723 1080268 R identified by similarity to SP:Q50604; match to protein family HMM PF02577; hypothetical protein complement(1079723..1080268) Desulfovibrio vulgaris str. Hildenborough 2793325 YP_010205.1 CDS miaB NC_002937.3 1080262 1081611 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1080262..1081611) Desulfovibrio vulgaris str. Hildenborough 2793326 YP_010206.1 CDS DVU0985 NC_002937.3 1081606 1081863 D hypothetical protein 1081606..1081863 Desulfovibrio vulgaris str. Hildenborough 2793327 YP_010207.1 CDS DVU0986 NC_002937.3 1082046 1082165 R hypothetical protein complement(1082046..1082165) Desulfovibrio vulgaris str. Hildenborough 2793328 YP_010208.1 CDS DVU0987 NC_002937.3 1082181 1082384 D identified by match to protein family HMM PF00403; heavy metal-binding domain-containing protein 1082181..1082384 Desulfovibrio vulgaris str. Hildenborough 2793329 YP_010209.1 CDS DVU0988 NC_002937.3 1082842 1083768 R identified by match to protein family HMM PF00294; carbohydrate kinase complement(1082842..1083768) Desulfovibrio vulgaris str. Hildenborough 2793330 YP_010210.1 CDS DVU0989 NC_002937.3 1083778 1084218 R identified by similarity to SP:P36654; match to protein family HMM PF03091; periplasmic divalent cation tolerance protein cutA complement(1083778..1084218) Desulfovibrio vulgaris str. Hildenborough 2794146 YP_010211.1 CDS DVU0990 NC_002937.3 1084333 1085190 D identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 1084333..1085190 Desulfovibrio vulgaris str. Hildenborough 2794147 YP_010212.1 CDS DVU0991 NC_002937.3 1085187 1086005 D identified by similarity to OMNI:NTL01MM1967; hypothetical protein 1085187..1086005 Desulfovibrio vulgaris str. Hildenborough 2794148 YP_010213.1 CDS cheV-3 NC_002937.3 1086193 1087155 D identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 1086193..1087155 Desulfovibrio vulgaris str. Hildenborough 2794149 YP_010214.1 CDS DVU0993 NC_002937.3 1087234 1087956 D hypothetical protein 1087234..1087956 Desulfovibrio vulgaris str. Hildenborough 2794150 YP_010215.1 CDS DVU0994 NC_002937.3 1088229 1088408 R hypothetical protein complement(1088229..1088408) Desulfovibrio vulgaris str. Hildenborough 2794151 YP_010216.1 CDS DVU0995 NC_002937.3 1088648 1089235 D identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; ThiJ/PfpI family protein 1088648..1089235 Desulfovibrio vulgaris str. Hildenborough 2794152 YP_010217.1 CDS DVU0996 NC_002937.3 1089448 1090323 R hypothetical protein complement(1089448..1090323) Desulfovibrio vulgaris str. Hildenborough 2794153 YP_010218.1 CDS metF NC_002937.3 1090724 1091599 D identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 1090724..1091599 Desulfovibrio vulgaris str. Hildenborough 2794154 YP_010219.1 CDS DVU0998 NC_002937.3 1092123 1093178 D identified by match to protein family HMM PF01075; heptosyltransferase 1092123..1093178 Desulfovibrio vulgaris str. Hildenborough 2795112 YP_010220.1 CDS DVU0999 NC_002937.3 1093789 1095948 D identified by similarity to SP:P36655; match to protein family HMM PF02683; thio:disulfide interchange protein 1093789..1095948 Desulfovibrio vulgaris str. Hildenborough 2795115 YP_010221.1 CDS DVU1000 NC_002937.3 1096059 1097282 R identified by match to protein family HMM PF00557; M24 family peptidase complement(1096059..1097282) Desulfovibrio vulgaris str. Hildenborough 2795116 YP_010222.1 CDS DVU1001 NC_002937.3 1097428 1097832 D identified by match to protein family HMM PF02629; coenzyme A binding protein 1097428..1097832 Desulfovibrio vulgaris str. Hildenborough 2795117 YP_010223.1 CDS DVU1002 NC_002937.3 1097829 1098284 D identified by match to protein family HMM PF03692; hypothetical protein 1097829..1098284 Desulfovibrio vulgaris str. Hildenborough 2795118 YP_010224.1 CDS DVU1003 NC_002937.3 1098299 1099285 D identified by match to protein family HMM PF00226; dnaJ domain-containing protein 1098299..1099285 Desulfovibrio vulgaris str. Hildenborough 2795119 YP_010225.1 CDS DVU1004 NC_002937.3 1099427 1100311 R identified by similarity to OMNI:NTL01PH00071; match to protein family HMM PF00892; hypothetical protein complement(1099427..1100311) Desulfovibrio vulgaris str. Hildenborough 2794642 YP_010226.1 CDS DVU1005 NC_002937.3 1100542 1101762 D hypothetical protein 1100542..1101762 Desulfovibrio vulgaris str. Hildenborough 2794643 YP_010227.1 CDS DVU1006 NC_002937.3 1102246 1102695 R hypothetical protein complement(1102246..1102695) Desulfovibrio vulgaris str. Hildenborough 2794644 YP_010228.1 CDS cobU NC_002937.3 1102911 1103447 D identified by similarity to SP:P29931; match to protein family HMM PF02283; cobinamide kinase/cobinamide phosphate guanylyltransferase 1102911..1103447 Desulfovibrio vulgaris str. Hildenborough 2794645 YP_010229.1 CDS DVU1008 NC_002937.3 1103500 1104303 D hypothetical protein 1103500..1104303 Desulfovibrio vulgaris str. Hildenborough 2794646 YP_010230.1 CDS DVU1009 NC_002937.3 1104647 1105261 R hypothetical protein complement(1104647..1105261) Desulfovibrio vulgaris str. Hildenborough 2794647 YP_010231.1 CDS DVU1010 NC_002937.3 1105375 1105578 D hypothetical protein 1105375..1105578 Desulfovibrio vulgaris str. Hildenborough 2794648 YP_010232.1 CDS DVU1011 NC_002937.3 1105878 1105976 R hypothetical protein complement(1105878..1105976) Desulfovibrio vulgaris str. Hildenborough 2794649 YP_010233.1 CDS DVU1012 NC_002937.3 1106001 1115117 R identified by match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM TIGR01612; hemolysin-type calcium-binding repeat-containing protein complement(1106001..1115117) Desulfovibrio vulgaris str. Hildenborough 2794650 YP_010234.1 CDS DVU1013 NC_002937.3 1115282 1116652 R identified by similarity to GP:150976; match to protein family HMM PF02321; match to protein family HMM TIGR01844; TolC family type I secretion outer membrane protein complement(1115282..1116652) Desulfovibrio vulgaris str. Hildenborough 2793736 YP_010235.1 CDS DVU1014 NC_002937.3 1116656 1116751 D hypothetical protein 1116656..1116751 Desulfovibrio vulgaris str. Hildenborough 2793737 YP_010236.1 CDS DVU1015 NC_002937.3 1116735 1116881 D hypothetical protein 1116735..1116881 Desulfovibrio vulgaris str. Hildenborough 2793738 YP_010237.1 CDS DVU1016 NC_002937.3 1116913 1117077 R hypothetical protein complement(1116913..1117077) Desulfovibrio vulgaris str. Hildenborough 2793739 YP_010238.1 CDS DVU1017 NC_002937.3 1117054 1119384 D identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1117054..1119384 Desulfovibrio vulgaris str. Hildenborough 2793740 YP_010239.2 CDS DVU1018 NC_002937.3 1119387 1120733 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; HlyD family type I secretion membrane fusion protein 1119387..1120733 Desulfovibrio vulgaris str. Hildenborough 2793741 YP_010240.1 CDS DVU1019 NC_002937.3 1120733 1121953 D identified by similarity to OMNI:VCA1081; hypothetical protein 1120733..1121953 Desulfovibrio vulgaris str. Hildenborough 2793742 YP_010241.1 CDS DVU1020 NC_002937.3 1121956 1124061 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00229; HD domain/sensory box protein 1121956..1124061 Desulfovibrio vulgaris str. Hildenborough 2793743 YP_010242.1 CDS DVU1021 NC_002937.3 1124280 1125446 R identified by similarity to OMNI:NTL02MA4295; match to protein family HMM PF01458; hypothetical protein complement(1124280..1125446) Desulfovibrio vulgaris str. Hildenborough 2793744 YP_010243.1 CDS DVU1022 NC_002937.3 1125448 1126224 R identified by similarity to OMNI:NTL02MA4294; match to protein family HMM PF00005; match to protein family HMM TIGR01978; SUF system FeS assembly ATPase SufC complement(1125448..1126224) Desulfovibrio vulgaris str. Hildenborough 2793745 YP_010244.1 CDS DVU1023 NC_002937.3 1126725 1127465 R identified by similarity to OMNI:NTL01TT0367; match to protein family HMM PF01694; rhomboid family protein complement(1126725..1127465) Desulfovibrio vulgaris str. Hildenborough 2794520 YP_010245.1 CDS rluD/coaE NC_002937.3 1127477 1129102 R identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01121; match to protein family HMM PF01479; match to protein family HMM TIGR00005; match to protein family HMM TIGR00152; ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase complement(1127477..1129102) Desulfovibrio vulgaris str. Hildenborough 2794521 YP_010246.1 CDS upp NC_002937.3 1129212 1129838 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1129212..1129838 Desulfovibrio vulgaris str. Hildenborough 2794522 YP_010247.1 CDS uraA NC_002937.3 1130018 1131277 D identified by similarity to SP:P39766; match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 1130018..1131277 Desulfovibrio vulgaris str. Hildenborough 2794523 YP_010248.1 CDS DVU1027 NC_002937.3 1131511 1132482 D hypothetical protein 1131511..1132482 Desulfovibrio vulgaris str. Hildenborough 2794524 YP_010249.1 CDS cmk NC_002937.3 1132719 1133417 R identified by similarity to SP:P23863; match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase complement(1132719..1133417) Desulfovibrio vulgaris str. Hildenborough 2794525 YP_010250.1 CDS hisC NC_002937.3 1133410 1134531 R identified by similarity to SP:P17731; match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate aminotransferase complement(1133410..1134531) Desulfovibrio vulgaris str. Hildenborough 2794526 YP_010251.1 CDS DVU1030 NC_002937.3 1134798 1135241 R identified by match to protein family HMM PF00582; universal stress protein complement(1134798..1135241) Desulfovibrio vulgaris str. Hildenborough 2794527 YP_010252.1 CDS DVU1031 NC_002937.3 1135240 1135416 D hypothetical protein 1135240..1135416 Desulfovibrio vulgaris str. Hildenborough 2796244 YP_010253.1 CDS DVU1032 NC_002937.3 1135502 1136011 D hypothetical protein 1135502..1136011 Desulfovibrio vulgaris str. Hildenborough 2796245 YP_010254.1 CDS DVU1033 NC_002937.3 1136444 1136938 R identified by similarity to SP:P46323; match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible protein CinA protein, truncation complement(1136444..1136938) Desulfovibrio vulgaris str. Hildenborough 2796246 YP_010255.1 CDS DVU1034 NC_002937.3 1137146 1137931 D hypothetical protein 1137146..1137931 Desulfovibrio vulgaris str. Hildenborough 2796247 YP_010256.2 CDS DVU1035 NC_002937.3 1137931 1138995 D glucokinase 1137931..1138995 Desulfovibrio vulgaris str. Hildenborough 2796248 YP_010257.1 CDS DVU1036 NC_002937.3 1138992 1139876 D hypothetical protein 1138992..1139876 Desulfovibrio vulgaris str. Hildenborough 2796249 YP_010258.1 CDS DVU1037 NC_002937.3 1139907 1141349 D identified by similarity to SP:P16171; match to protein family HMM PF00070; match to protein family HMM PF02852; mercuric reductase 1139907..1141349 Desulfovibrio vulgaris str. Hildenborough 2796250 YP_010259.1 CDS hisA NC_002937.3 1141452 1142201 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(1141452..1142201) Desulfovibrio vulgaris str. Hildenborough 2796251 YP_010260.1 CDS DVU1039 NC_002937.3 1142198 1142839 R lipoprotein complement(1142198..1142839) Desulfovibrio vulgaris str. Hildenborough 2796252 YP_010261.2 CDS hisB NC_002937.3 1142839 1143447 R identified by similarity to SP:O34683; match to protein family HMM PF00475; imidazoleglycerol-phosphate dehydratase complement(1142839..1143447) Desulfovibrio vulgaris str. Hildenborough 2796253 YP_010262.1 CDS tatC NC_002937.3 1143464 1144237 R identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC complement(1143464..1144237) Desulfovibrio vulgaris str. Hildenborough 2795262 YP_010263.1 CDS tatB NC_002937.3 1144695 1145063 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410; twin-arginine translocation protein TatB complement(1144695..1145063) Desulfovibrio vulgaris str. Hildenborough 2795263 YP_010264.1 CDS guaA NC_002937.3 1145100 1146647 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1145100..1146647) Desulfovibrio vulgaris str. Hildenborough 2795264 YP_010265.1 CDS guaB NC_002937.3 1146685 1148142 R identified by similarity to SP:P50099; match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5`-monophosphate dehydrogenase complement(1146685..1148142) Desulfovibrio vulgaris str. Hildenborough 2795265 YP_010266.1 CDS DVU1045 NC_002937.3 1148402 1148998 R hypothetical protein complement(1148402..1148998) Desulfovibrio vulgaris str. Hildenborough 2795266 YP_010267.1 CDS DVU1046 NC_002937.3 1148991 1149128 R hypothetical protein complement(1148991..1149128) Desulfovibrio vulgaris str. Hildenborough 2795267 YP_010268.1 CDS ccmC NC_002937.3 1149138 1149812 R identified by similarity to SP:P33929; match to protein family HMM PF01578; cytochrome c-type biogenesis protein CcmC complement(1149138..1149812) Desulfovibrio vulgaris str. Hildenborough 2795268 YP_010269.1 CDS ccmB NC_002937.3 1149864 1150541 R cytochrome c-type biogenesis protein CcmB complement(1149864..1150541) Desulfovibrio vulgaris str. Hildenborough 2795269 YP_010270.1 CDS DVU1049 NC_002937.3 1150535 1151185 R identified by similarity to SP:P46903; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1150535..1151185) Desulfovibrio vulgaris str. Hildenborough 2794895 YP_010271.1 CDS ccmF NC_002937.3 1151185 1153080 R identified by match to protein family HMM PF01578; cytochrome c-type biogenesis protein CcmF complement(1151185..1153080) Desulfovibrio vulgaris str. Hildenborough 2794896 YP_010272.1 CDS ccmE NC_002937.3 1153168 1153581 R cytochrome c-type biogenesis protein CcmE complement(1153168..1153581) Desulfovibrio vulgaris str. Hildenborough 2794897 YP_010273.1 CDS DVU1052 NC_002937.3 1153719 1154783 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hypothetical protein complement(1153719..1154783) Desulfovibrio vulgaris str. Hildenborough 2794898 YP_010274.1 CDS DVU1053 NC_002937.3 1154768 1154860 D hypothetical protein 1154768..1154860 Desulfovibrio vulgaris str. Hildenborough 2794899 YP_010275.1 CDS DVU1054 NC_002937.3 1154949 1155587 D identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; HAD superfamily hydrolase 1154949..1155587 Desulfovibrio vulgaris str. Hildenborough 2794900 YP_010276.1 CDS DVU1055 NC_002937.3 1155824 1156858 D identified by match to protein family HMM PF01075; heptosyltransferase 1155824..1156858 Desulfovibrio vulgaris str. Hildenborough 2794901 YP_010277.1 CDS DVU1056 NC_002937.3 1157353 1158174 R identified by similarity to OMNI:BR1368; match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein complement(1157353..1158174) Desulfovibrio vulgaris str. Hildenborough 2794902 YP_010278.1 CDS DVU1057 NC_002937.3 1158171 1158941 R identified by similarity to OMNI:BR1367; match to protein family HMM PF02361; cobalt ABC transporter permease complement(1158171..1158941) Desulfovibrio vulgaris str. Hildenborough 2794903 YP_010279.1 CDS cbiM NC_002937.3 1158944 1159558 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(1158944..1159558) Desulfovibrio vulgaris str. Hildenborough 2794770 YP_010280.1 CDS DVU1059 NC_002937.3 1159778 1160950 R aminotransferase complement(1159778..1160950) Desulfovibrio vulgaris str. Hildenborough 2794771 YP_010281.1 CDS DVU1060 NC_002937.3 1160947 1162050 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(1160947..1162050) Desulfovibrio vulgaris str. Hildenborough 2794772 YP_010282.1 CDS DVU1061 NC_002937.3 1162060 1163121 R identified by similarity to SP:P71243; match to protein family HMM PF00534; glycosyl transferase family protein complement(1162060..1163121) Desulfovibrio vulgaris str. Hildenborough 2794773 YP_010283.1 CDS DVU1062 NC_002937.3 1163247 1164017 R identified by similarity to OMNI:NTL01SS02998; hypothetical protein complement(1163247..1164017) Desulfovibrio vulgaris str. Hildenborough 2794774 YP_010284.1 CDS DVU1063 NC_002937.3 1164161 1165600 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; transcriptional regulator 1164161..1165600 Desulfovibrio vulgaris str. Hildenborough 2794775 YP_010285.1 CDS DVU1064 NC_002937.3 1165948 1167876 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1165948..1167876 Desulfovibrio vulgaris str. Hildenborough 2794776 YP_010286.1 CDS DVU1065 NC_002937.3 1167904 1169793 D identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerse domain-containing protein 1167904..1169793 Desulfovibrio vulgaris str. Hildenborough 2794777 YP_010287.1 CDS gpt NC_002937.3 1170213 1170704 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 1170213..1170704 Desulfovibrio vulgaris str. Hildenborough 2794778 YP_010288.1 CDS DVU1067 NC_002937.3 1170790 1171938 D identified by match to protein family HMM PF02608; Bmp family membrane protein 1170790..1171938 Desulfovibrio vulgaris str. Hildenborough 2794037 YP_010289.1 CDS DVU1068 NC_002937.3 1171964 1173028 D identified by match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease 1171964..1173028 Desulfovibrio vulgaris str. Hildenborough 2794038 YP_010290.1 CDS DVU1069 NC_002937.3 1173025 1173945 D identified by match to protein family HMM PF02653; branched chain amino acid ABC transporter permease 1173025..1173945 Desulfovibrio vulgaris str. Hildenborough 2794039 YP_010291.2 CDS DVU1070 NC_002937.3 1173950 1175524 D identified by match to protein family HMM PF00005; branched chain amino acid ABC transporter ATP-binding protein 1173950..1175524 Desulfovibrio vulgaris str. Hildenborough 2794040 YP_010292.1 CDS DVU1071 NC_002937.3 1175953 1176543 R hypothetical protein complement(1175953..1176543) Desulfovibrio vulgaris str. Hildenborough 2794041 YP_010293.1 CDS DVU1072 NC_002937.3 1176605 1177267 R identified by similarity to OMNI:BR1366; hypothetical protein complement(1176605..1177267) Desulfovibrio vulgaris str. Hildenborough 2794042 YP_010294.1 CDS DVU1073 NC_002937.3 1177463 1178389 D identified by similarity to OMNI:NT01MC2073; hypothetical protein 1177463..1178389 Desulfovibrio vulgaris str. Hildenborough 2794043 YP_010295.1 CDS rpmH NC_002937.3 1178593 1178727 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 1178593..1178727 Desulfovibrio vulgaris str. Hildenborough 2794044 YP_010296.1 CDS rnpA NC_002937.3 1178814 1179104 D identified by similarity to SP:P58031; match to protein family HMM TIGR00188; ribonuclease P protein component 1178814..1179104 Desulfovibrio vulgaris str. Hildenborough 2794045 YP_010297.1 CDS DVU1076 NC_002937.3 1179101 1179361 D identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1179101..1179361 Desulfovibrio vulgaris str. Hildenborough 2794046 YP_010298.1 CDS DVU1077 NC_002937.3 1179369 1180973 D identified by match to protein family HMM PF02096; inner membrane protein, 60 kDa 1179369..1180973 Desulfovibrio vulgaris str. Hildenborough 2794455 YP_010299.1 CDS DVU1078 NC_002937.3 1181012 1182304 D identified by match to protein family HMM PF01424; R3H domain-containing protein 1181012..1182304 Desulfovibrio vulgaris str. Hildenborough 2794456 YP_010300.1 CDS trmE NC_002937.3 1182378 1183751 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1182378..1183751 Desulfovibrio vulgaris str. Hildenborough 2794457 YP_010301.1 CDS DVU1080 NC_002937.3 1184070 1184612 D identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 1184070..1184612 Desulfovibrio vulgaris str. Hildenborough 2794458 YP_010302.1 CDS DVU1081 NC_002937.3 1184609 1186228 D identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 1184609..1186228 Desulfovibrio vulgaris str. Hildenborough 2794459 YP_010303.1 CDS DVU1082 NC_002937.3 1186345 1186953 D identified by match to protein family HMM PF01612; 3' exoribonuclease 1186345..1186953 Desulfovibrio vulgaris str. Hildenborough 2794460 YP_010304.1 CDS phoB NC_002937.3 1187127 1187816 D identified by similarity to SP:P23620; match to protein family HMM PF00072; match to protein family HMM PF00486; phosphate regulon transcriptional regulator PhoB 1187127..1187816 Desulfovibrio vulgaris str. Hildenborough 2794461 YP_010305.1 CDS pstB-1 NC_002937.3 1187844 1188611 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1187844..1188611 Desulfovibrio vulgaris str. Hildenborough 2794462 YP_010306.1 CDS phoU NC_002937.3 1188620 1189285 D identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system protein PhoU 1188620..1189285 Desulfovibrio vulgaris str. Hildenborough 2794463 YP_010307.1 CDS DVU1086 NC_002937.3 1189443 1190192 D hypothetical protein 1189443..1190192 Desulfovibrio vulgaris str. Hildenborough 2794065 YP_010308.1 CDS DVU1087 NC_002937.3 1190196 1191176 D identified by similarity to GP:2342730; hypothetical protein 1190196..1191176 Desulfovibrio vulgaris str. Hildenborough 2794066 YP_010309.1 CDS DVU1088 NC_002937.3 1191223 1191399 D hypothetical protein 1191223..1191399 Desulfovibrio vulgaris str. Hildenborough 2794067 YP_010310.1 CDS alaS NC_002937.3 1191779 1194418 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1191779..1194418) Desulfovibrio vulgaris str. Hildenborough 2794068 YP_010311.1 CDS recA NC_002937.3 1194497 1195570 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(1194497..1195570) Desulfovibrio vulgaris str. Hildenborough 2794069 YP_010312.1 CDS DVU1091 NC_002937.3 1195859 1196965 D identified by similarity to OMNI:NTL03CP2210; hypothetical protein 1195859..1196965 Desulfovibrio vulgaris str. Hildenborough 2794070 YP_010313.1 CDS DVU1092 NC_002937.3 1197183 1198544 D identified by similarity to SP:P45320; match to protein family HMM PF00209; sodium-dependent symporter family protein 1197183..1198544 Desulfovibrio vulgaris str. Hildenborough 2794071 YP_010314.1 CDS DVU1093 NC_002937.3 1198734 1199264 R HAD family hydrolase complement(1198734..1199264) Desulfovibrio vulgaris str. Hildenborough 2794072 YP_010315.1 CDS argH NC_002937.3 1199397 1200779 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(1199397..1200779) Desulfovibrio vulgaris str. Hildenborough 2794073 YP_010316.1 CDS argG NC_002937.3 1200783 1201973 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(1200783..1201973) Desulfovibrio vulgaris str. Hildenborough 2794339 YP_010317.1 CDS argF NC_002937.3 1202025 1202927 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1202025..1202927) Desulfovibrio vulgaris str. Hildenborough 2794340 YP_010318.1 CDS DVU1097 NC_002937.3 1203069 1203818 D identified by similarity to OMNI:NTL01MM2648; hypothetical protein 1203069..1203818 Desulfovibrio vulgaris str. Hildenborough 2794341 YP_010319.1 CDS DVU1098 NC_002937.3 1204238 1204981 R identified by match to protein family HMM PF01555; adenine specific DNA methyltransferase complement(1204238..1204981) Desulfovibrio vulgaris str. Hildenborough 2794343 YP_010320.1 CDS DVU1099 NC_002937.3 1205411 1205857 R tail fiber assembly protein complement(1205411..1205857) Desulfovibrio vulgaris str. Hildenborough 2794344 YP_010321.1 CDS DVU1100 NC_002937.3 1205871 1207388 R tail fiber protein complement(1205871..1207388) Desulfovibrio vulgaris str. Hildenborough 2795073 YP_010322.1 CDS DVU1101 NC_002937.3 1207390 1208046 R hypothetical protein complement(1207390..1208046) Desulfovibrio vulgaris str. Hildenborough 2795074 YP_010323.1 CDS DVU1102 NC_002937.3 1208201 1209355 R baseplate assembly protein complement(1208201..1209355) Desulfovibrio vulgaris str. Hildenborough 2795075 YP_010324.1 CDS DVU1103 NC_002937.3 1209360 1209794 R identified by match to protein family HMM PF04965; baseplate assembly protein complement(1209360..1209794) Desulfovibrio vulgaris str. Hildenborough 2795076 YP_010325.1 CDS DVU1104 NC_002937.3 1209791 1210522 R baseplate assembly protein complement(1209791..1210522) Desulfovibrio vulgaris str. Hildenborough 2795077 YP_010326.1 CDS DVU1105 NC_002937.3 1210509 1211309 R hypothetical protein complement(1210509..1211309) Desulfovibrio vulgaris str. Hildenborough 2795078 YP_010327.1 CDS DVU1106 NC_002937.3 1211455 1212006 R hypothetical protein complement(1211455..1212006) Desulfovibrio vulgaris str. Hildenborough 2795079 YP_010328.1 CDS DVU1107 NC_002937.3 1212003 1214345 R identified by similarity to OMNI:NTL01XF00731; match to protein family HMM TIGR01760; tail tape measure protein complement(1212003..1214345) Desulfovibrio vulgaris str. Hildenborough 2795080 YP_010329.1 CDS DVU1108 NC_002937.3 1214546 1214878 R hypothetical protein complement(1214546..1214878) Desulfovibrio vulgaris str. Hildenborough 2795081 YP_010330.1 CDS DVU1109 NC_002937.3 1215111 1216133 D identified by match to protein family HMM PF00991; ATPase 1215111..1216133 Desulfovibrio vulgaris str. Hildenborough 2795082 YP_010331.1 CDS DVU1110 NC_002937.3 1216193 1216639 R hypothetical protein complement(1216193..1216639) Desulfovibrio vulgaris str. Hildenborough 2793343 YP_010332.1 CDS DVU1111 NC_002937.3 1216652 1218337 R hypothetical protein complement(1216652..1218337) Desulfovibrio vulgaris str. Hildenborough 2793344 YP_010333.1 CDS DVU1112 NC_002937.3 1218347 1218727 R hypothetical protein complement(1218347..1218727) Desulfovibrio vulgaris str. Hildenborough 2793345 YP_010334.1 CDS DVU1113 NC_002937.3 1218729 1219265 R hypothetical protein complement(1218729..1219265) Desulfovibrio vulgaris str. Hildenborough 2793346 YP_010335.1 CDS DVU1114 NC_002937.3 1219280 1219720 R identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635; virion morphogenesis protein complement(1219280..1219720) Desulfovibrio vulgaris str. Hildenborough 2793347 YP_010336.1 CDS DVU1115 NC_002937.3 1219720 1220151 R hypothetical protein complement(1219720..1220151) Desulfovibrio vulgaris str. Hildenborough 2793348 YP_010337.1 CDS DVU1116 NC_002937.3 1220432 1221427 R hypothetical protein complement(1220432..1221427) Desulfovibrio vulgaris str. Hildenborough 2793349 YP_010338.1 CDS DVU1117 NC_002937.3 1221436 1221783 R hypothetical protein complement(1221436..1221783) Desulfovibrio vulgaris str. Hildenborough 2793350 YP_010339.1 CDS DVU1118 NC_002937.3 1221799 1222749 R identified by similarity to OMNI:NTL03ST1420; hypothetical protein complement(1221799..1222749) Desulfovibrio vulgaris str. Hildenborough 2793351 YP_010340.1 CDS DVU1119 NC_002937.3 1222939 1224240 R identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; virion morphogenesis protein complement(1222939..1224240) Desulfovibrio vulgaris str. Hildenborough 2793352 YP_010341.1 CDS DVU1120 NC_002937.3 1224240 1225832 R identified by similarity to OMNI:NTL03ST1417; hypothetical protein complement(1224240..1225832) Desulfovibrio vulgaris str. Hildenborough 2794731 YP_010342.1 CDS DVU1121 NC_002937.3 1225917 1226537 R hypothetical protein complement(1225917..1226537) Desulfovibrio vulgaris str. Hildenborough 2794732 YP_010343.1 CDS DVU1122 NC_002937.3 1226597 1228081 R portal protein complement(1226597..1228081) Desulfovibrio vulgaris str. Hildenborough 2794733 YP_010344.1 CDS DVU1123 NC_002937.3 1228132 1228701 R identified by similarity to GP:1772508; hypothetical protein complement(1228132..1228701) Desulfovibrio vulgaris str. Hildenborough 2794734 YP_010345.1 CDS DVU1124 NC_002937.3 1228740 1228982 R hypothetical protein complement(1228740..1228982) Desulfovibrio vulgaris str. Hildenborough 2794735 YP_010346.1 CDS DVU1125 NC_002937.3 1228979 1229452 R identified by similarity to GP:5531665; hypothetical protein complement(1228979..1229452) Desulfovibrio vulgaris str. Hildenborough 2794736 YP_010347.1 CDS DVU1126 NC_002937.3 1229449 1229754 R lipoprotein complement(1229449..1229754) Desulfovibrio vulgaris str. Hildenborough 2794737 YP_010348.1 CDS DVU1127 NC_002937.3 1229708 1230121 R hypothetical protein complement(1229708..1230121) Desulfovibrio vulgaris str. Hildenborough 2794738 YP_010349.1 CDS DVU1128 NC_002937.3 1230114 1230779 R identified by match to protein family HMM PF01464; lysozyme complement(1230114..1230779) Desulfovibrio vulgaris str. Hildenborough 2794739 YP_010350.1 CDS DVU1129 NC_002937.3 1230779 1231147 R identified by similarity to OMNI:NTL03ST1409; hypothetical protein complement(1230779..1231147) Desulfovibrio vulgaris str. Hildenborough 2795202 YP_010351.1 CDS DVU1130 NC_002937.3 1231221 1231685 R DNA-binding protein complement(1231221..1231685) Desulfovibrio vulgaris str. Hildenborough 2795203 YP_010352.1 CDS DVU1131 NC_002937.3 1231669 1232034 R hypothetical protein complement(1231669..1232034) Desulfovibrio vulgaris str. Hildenborough 2795204 YP_010353.1 CDS DVU1132 NC_002937.3 1232031 1232540 R identified by similarity to OMNI:NMB0985; hypothetical protein complement(1232031..1232540) Desulfovibrio vulgaris str. Hildenborough 2795205 YP_010354.1 CDS DVU1133 NC_002937.3 1232504 1232962 R hypothetical protein complement(1232504..1232962) Desulfovibrio vulgaris str. Hildenborough 2795206 YP_010355.1 CDS hupB NC_002937.3 1233044 1233331 R identified by similarity to SP:P02346; match to protein family HMM PF00216; DNA-binding protein HU subunit beta complement(1233044..1233331) Desulfovibrio vulgaris str. Hildenborough 2795207 YP_010356.1 CDS DVU1135 NC_002937.3 1233345 1233584 R identified by similarity to GP:14277814; hypothetical protein complement(1233345..1233584) Desulfovibrio vulgaris str. Hildenborough 2795208 YP_010357.1 CDS DVU1136 NC_002937.3 1233602 1234114 R identified by similarity to SP:P06023; host-nuclease inhibitor protein Gam complement(1233602..1234114) Desulfovibrio vulgaris str. Hildenborough 2795209 YP_010358.1 CDS DVU1137 NC_002937.3 1234116 1234304 R hypothetical protein complement(1234116..1234304) Desulfovibrio vulgaris str. Hildenborough 2795210 YP_010359.1 CDS DVU1138 NC_002937.3 1234307 1234939 R hypothetical protein complement(1234307..1234939) Desulfovibrio vulgaris str. Hildenborough 2795211 YP_010360.1 CDS DVU1139 NC_002937.3 1234932 1235669 R identified by similarity to GP:974770; bacteriophage DNA transposition B protein complement(1234932..1235669) Desulfovibrio vulgaris str. Hildenborough 2793422 YP_010361.1 CDS DVU1140 NC_002937.3 1235666 1237819 R identified by similarity to SP:P07636; bacteriophage transposase A protein complement(1235666..1237819) Desulfovibrio vulgaris str. Hildenborough 2793423 YP_010362.1 CDS DVU1141 NC_002937.3 1238043 1238474 R hypothetical protein complement(1238043..1238474) Desulfovibrio vulgaris str. Hildenborough 2793424 YP_010363.1 CDS DVU1142 NC_002937.3 1238531 1238800 R transcriptional regulator complement(1238531..1238800) Desulfovibrio vulgaris str. Hildenborough 2793425 YP_010364.1 CDS DVU1143 NC_002937.3 1238797 1239222 R hypothetical protein complement(1238797..1239222) Desulfovibrio vulgaris str. Hildenborough 2793426 YP_010365.1 CDS DVU1144 NC_002937.3 1239484 1240251 D identified by match to protein family HMM PF00717; Cro/CI family transcriptional regulator 1239484..1240251 Desulfovibrio vulgaris str. Hildenborough 2793427 YP_010366.1 CDS DVU1145 NC_002937.3 1240891 1241031 D hypothetical protein 1240891..1241031 Desulfovibrio vulgaris str. Hildenborough 2793428 YP_010367.1 CDS DVU1147 NC_002937.3 1241837 1243216 D identified by similarity to GP:1245347; match to protein family HMM PF03062; alginate o-acetyltransferase AlgI 1241837..1243216 Desulfovibrio vulgaris str. Hildenborough 2793430 YP_010368.1 CDS DVU1148 NC_002937.3 1243218 1244264 D identified by similarity to GP:28202763; hypothetical protein 1243218..1244264 Desulfovibrio vulgaris str. Hildenborough 2794371 YP_010369.1 CDS DVU1150 NC_002937.3 1245191 1245604 D identified by similarity to OMNI:NTL01YP0371; hypothetical protein 1245191..1245604 Desulfovibrio vulgaris str. Hildenborough 2794373 YP_010370.1 CDS DVU1151 NC_002937.3 1245814 1245966 D hypothetical protein 1245814..1245966 Desulfovibrio vulgaris str. Hildenborough 2794374 YP_010371.1 CDS DVU1152 NC_002937.3 1246091 1246705 D hypothetical protein 1246091..1246705 Desulfovibrio vulgaris str. Hildenborough 2794375 YP_010372.1 CDS DVU1153 NC_002937.3 1246834 1246944 R hypothetical protein complement(1246834..1246944) Desulfovibrio vulgaris str. Hildenborough 2794376 YP_010373.1 CDS DVU1154 NC_002937.3 1246999 1247136 R hypothetical protein complement(1246999..1247136) Desulfovibrio vulgaris str. Hildenborough 2794377 YP_010374.1 CDS DVU1155 NC_002937.3 1247203 1247307 R hypothetical protein complement(1247203..1247307) Desulfovibrio vulgaris str. Hildenborough 2794378 YP_010375.1 CDS DVU1156 NC_002937.3 1247371 1248810 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator /response regulator complement(1247371..1248810) Desulfovibrio vulgaris str. Hildenborough 2794379 YP_010376.1 CDS DVU1157 NC_002937.3 1248807 1252064 R identified by match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(1248807..1252064) Desulfovibrio vulgaris str. Hildenborough 2794230 YP_010377.1 CDS DVU1158 NC_002937.3 1252320 1252634 D hypothetical protein 1252320..1252634 Desulfovibrio vulgaris str. Hildenborough 2794231 YP_010378.1 CDS DVU1159 NC_002937.3 1252817 1252963 R hypothetical protein complement(1252817..1252963) Desulfovibrio vulgaris str. Hildenborough 2794232 YP_010379.1 CDS DVU1160 NC_002937.3 1253139 1254152 R identified by similarity to SP:Q13336; match to protein family HMM PF03253; urea transporter complement(1253139..1254152) Desulfovibrio vulgaris str. Hildenborough 2794233 YP_010380.1 CDS DVU1161 NC_002937.3 1254189 1254419 R hypothetical protein complement(1254189..1254419) Desulfovibrio vulgaris str. Hildenborough 2794234 YP_010381.1 CDS DVU1162 NC_002937.3 1254406 1254597 R hypothetical protein complement(1254406..1254597) Desulfovibrio vulgaris str. Hildenborough 2794235 YP_010382.1 CDS DVU1163 NC_002937.3 1254740 1256014 R identified by match to protein family HMM PF00083; major facilitator superfamily protein complement(1254740..1256014) Desulfovibrio vulgaris str. Hildenborough 2794236 YP_010383.1 CDS amiF NC_002937.3 1256134 1257138 R formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase complement(1256134..1257138) Desulfovibrio vulgaris str. Hildenborough 2794237 YP_010384.1 CDS DVU1165 NC_002937.3 1257810 1259129 D identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase 1257810..1259129 Desulfovibrio vulgaris str. Hildenborough 2794238 YP_010385.1 CDS DVU1166 NC_002937.3 1259571 1259723 R hypothetical protein complement(1259571..1259723) Desulfovibrio vulgaris str. Hildenborough 2794239 YP_010386.1 CDS DVU1167 NC_002937.3 1259801 1260337 D hypothetical protein 1259801..1260337 Desulfovibrio vulgaris str. Hildenborough 2794855 YP_010387.1 CDS DVU1168 NC_002937.3 1260521 1260937 R hypothetical protein complement(1260521..1260937) Desulfovibrio vulgaris str. Hildenborough 2794856 YP_010388.1 CDS DVU1169 NC_002937.3 1261035 1263449 R identified by similarity to SP:P39215; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein complement(1261035..1263449) Desulfovibrio vulgaris str. Hildenborough 2794857 YP_010389.1 CDS DVU1170 NC_002937.3 1263761 1263949 R hypothetical protein complement(1263761..1263949) Desulfovibrio vulgaris str. Hildenborough 2794858 YP_010390.1 CDS DVU1171 NC_002937.3 1263965 1264060 D hypothetical protein 1263965..1264060 Desulfovibrio vulgaris str. Hildenborough 2794859 YP_010391.1 CDS DVU1172 NC_002937.3 1264312 1264449 R hypothetical protein complement(1264312..1264449) Desulfovibrio vulgaris str. Hildenborough 2794860 YP_010392.1 CDS mviN-1 NC_002937.3 1264555 1266111 D identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 1264555..1266111 Desulfovibrio vulgaris str. Hildenborough 2794861 YP_010393.1 CDS DVU1174 NC_002937.3 1266446 1266823 R hypothetical protein complement(1266446..1266823) Desulfovibrio vulgaris str. Hildenborough 2794862 YP_010394.1 CDS DVU1175 NC_002937.3 1266860 1267297 R hypothetical protein complement(1266860..1267297) Desulfovibrio vulgaris str. Hildenborough 2794863 YP_010395.1 CDS DVU1176 NC_002937.3 1267479 1268036 D hypothetical protein 1267479..1268036 Desulfovibrio vulgaris str. Hildenborough 2794864 YP_010396.1 CDS DVU1177 NC_002937.3 1268360 1269022 R hypothetical protein complement(1268360..1269022) Desulfovibrio vulgaris str. Hildenborough 2796662 YP_010397.1 CDS DVU1178 NC_002937.3 1269031 1269150 R hypothetical protein complement(1269031..1269150) Desulfovibrio vulgaris str. Hildenborough 2796663 YP_010398.1 CDS aor NC_002937.3 1269177 1270907 D identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730; tungsten-containing aldehyde:ferredoxin oxidoreductase 1269177..1270907 Desulfovibrio vulgaris str. Hildenborough 2796664 YP_010399.1 CDS DVU1180 NC_002937.3 1271134 1271358 R hypothetical protein complement(1271134..1271358) Desulfovibrio vulgaris str. Hildenborough 2796665 YP_010400.1 CDS DVU1181 NC_002937.3 1271372 1272442 R identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277; response regulator complement(1271372..1272442) Desulfovibrio vulgaris str. Hildenborough 2796666 YP_010401.1 CDS DVU1182 NC_002937.3 1272491 1273405 R hypothetical protein complement(1272491..1273405) Desulfovibrio vulgaris str. Hildenborough 2796667 YP_010402.2 CDS DVU1183 NC_002937.3 1273387 1274634 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(1273387..1274634) Desulfovibrio vulgaris str. Hildenborough 2796668 YP_010404.1 CDS DVU1185 NC_002937.3 1274805 1275284 D identified by match to protein family HMM PF02674; colicin V production family protein 1274805..1275284 Desulfovibrio vulgaris str. Hildenborough 2796670 YP_010405.1 CDS mazG NC_002937.3 1275312 1276115 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 1275312..1276115 Desulfovibrio vulgaris str. Hildenborough 2796671 YP_010406.1 CDS DVU1187 NC_002937.3 1276232 1277056 D hypothetical protein 1276232..1277056 Desulfovibrio vulgaris str. Hildenborough 2796587 YP_010407.1 CDS DVU1188 NC_002937.3 1277104 1277325 D hypothetical protein 1277104..1277325 Desulfovibrio vulgaris str. Hildenborough 2796588 YP_010408.1 CDS DVU1189 NC_002937.3 1277322 1278521 D identified by similarity to OMNI:VC0624; match to protein family HMM PF01594; hypothetical protein 1277322..1278521 Desulfovibrio vulgaris str. Hildenborough 2796589 YP_010409.1 CDS DVU1190 NC_002937.3 1278751 1281531 D identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1278751..1281531 Desulfovibrio vulgaris str. Hildenborough 2796590 YP_010410.1 CDS DVU1191 NC_002937.3 1281920 1284490 R identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; match to protein family HMM TIGR01369; ATP-dependent protease La complement(1281920..1284490) Desulfovibrio vulgaris str. Hildenborough 2796591 YP_010411.1 CDS DVU1192 NC_002937.3 1284487 1284789 R identified by match to protein family HMM PF00708; acylphosphatase complement(1284487..1284789) Desulfovibrio vulgaris str. Hildenborough 2796592 YP_010412.1 CDS radC NC_002937.3 1284798 1285475 R identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608; DNA repair protein RadC complement(1284798..1285475) Desulfovibrio vulgaris str. Hildenborough 2796593 YP_010413.1 CDS DVU1194 NC_002937.3 1285511 1286617 R hypothetical protein complement(1285511..1286617) Desulfovibrio vulgaris str. Hildenborough 2796594 YP_010414.1 CDS DVU1195 NC_002937.3 1286583 1287101 R lipoprotein complement(1286583..1287101) Desulfovibrio vulgaris str. Hildenborough 2796595 YP_010415.1 CDS leuS NC_002937.3 1287085 1289574 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1287085..1289574) Desulfovibrio vulgaris str. Hildenborough 2796653 YP_010416.1 CDS nusB NC_002937.3 1289617 1290078 R identified by similarity to SP:P04381; match to protein family HMM PF01029; N utilization substance protein B complement(1289617..1290078) Desulfovibrio vulgaris str. Hildenborough 2796654 YP_010417.1 CDS ribH NC_002937.3 1290082 1290552 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1290082..1290552) Desulfovibrio vulgaris str. Hildenborough 2796655 YP_010418.1 CDS ribAB NC_002937.3 1290684 1291913 R identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(1290684..1291913) Desulfovibrio vulgaris str. Hildenborough 2796656 YP_010419.1 CDS ribE NC_002937.3 1291945 1292607 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1291945..1292607) Desulfovibrio vulgaris str. Hildenborough 2796657 YP_010420.1 CDS ribD NC_002937.3 1292613 1293746 R identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(1292613..1293746) Desulfovibrio vulgaris str. Hildenborough 2796658 YP_010421.1 CDS DVU1202 NC_002937.3 1293749 1294279 R identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase complement(1293749..1294279) Desulfovibrio vulgaris str. Hildenborough 2796659 YP_010422.1 CDS glyA NC_002937.3 1294345 1295583 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1294345..1295583) Desulfovibrio vulgaris str. Hildenborough 2796660 YP_010423.1 CDS fabF NC_002937.3 1295642 1296889 R identified by similarity to SP:P73283; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase complement(1295642..1296889) Desulfovibrio vulgaris str. Hildenborough 2796661 YP_010424.1 CDS acpP NC_002937.3 1297077 1297307 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1297077..1297307) Desulfovibrio vulgaris str. Hildenborough 2796682 YP_010425.1 CDS fabG NC_002937.3 1297364 1298107 R identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase complement(1297364..1298107) Desulfovibrio vulgaris str. Hildenborough 2796683 YP_010426.1 CDS fabH NC_002937.3 1298192 1299184 R identified by similarity to SP:P30790; match to protein family HMM TIGR00747; 3-oxoacyl-ACP synthase complement(1298192..1299184) Desulfovibrio vulgaris str. Hildenborough 2796684 YP_010427.1 CDS plsX NC_002937.3 1299241 1300278 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(1299241..1300278) Desulfovibrio vulgaris str. Hildenborough 2796685 YP_010428.1 CDS rpmF NC_002937.3 1300271 1300450 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1300271..1300450) Desulfovibrio vulgaris str. Hildenborough 2796686 YP_010429.1 CDS DVU1210 NC_002937.3 1300495 1301031 R identified by similarity to GP:1491791; match to protein family HMM PF02620; hypothetical protein complement(1300495..1301031) Desulfovibrio vulgaris str. Hildenborough 2796687 YP_010430.1 CDS rpmB NC_002937.3 1301234 1301443 D required for 70S ribosome assembly; 50S ribosomal protein L28 1301234..1301443 Desulfovibrio vulgaris str. Hildenborough 2796688 YP_010431.1 CDS fsxA NC_002937.3 1301750 1302310 D identified by similarity to SP:P37147; match to protein family HMM PF04186; fxsA protein 1301750..1302310 Desulfovibrio vulgaris str. Hildenborough 2796689 YP_010432.1 CDS DVU1213 NC_002937.3 1302307 1303320 D identified by match to protein family HMM PF01694; rhomboid family protein 1302307..1303320 Desulfovibrio vulgaris str. Hildenborough 2796690 YP_010433.2 CDS DVU1214 NC_002937.3 1303706 1305898 R identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase complement(1303706..1305898) Desulfovibrio vulgaris str. Hildenborough 2796672 YP_010434.1 CDS DVU1215 NC_002937.3 1305895 1306551 R identified by match to protein family HMM PF01569; PAP2 family protein complement(1305895..1306551) Desulfovibrio vulgaris str. Hildenborough 2796673 YP_010435.1 CDS DVU1216 NC_002937.3 1306615 1306839 R hypothetical protein complement(1306615..1306839) Desulfovibrio vulgaris str. Hildenborough 2796674 YP_010436.1 CDS DVU1217 NC_002937.3 1307187 1308596 D identified by similarity to SP:P37340; match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1307187..1308596 Desulfovibrio vulgaris str. Hildenborough 2796675 YP_010437.1 CDS DVU1218 NC_002937.3 1308927 1309226 R identified by similarity to SP:Q58452; match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein complement(1308927..1309226) Desulfovibrio vulgaris str. Hildenborough 2796676 YP_010438.1 CDS DVU1219 NC_002937.3 1309280 1311475 R identified by similarity to GP:6724082; hypothetical protein complement(1309280..1311475) Desulfovibrio vulgaris str. Hildenborough 2796677 YP_010439.1 CDS DVU1220 NC_002937.3 1311642 1312466 D identified by match to protein family HMM PF00037; match to protein family HMM PF00881; nitroreductase 1311642..1312466 Desulfovibrio vulgaris str. Hildenborough 2796678 YP_010440.1 CDS DVU1221 NC_002937.3 1312447 1312692 D hypothetical protein 1312447..1312692 Desulfovibrio vulgaris str. Hildenborough 2796679 YP_010441.1 CDS DVU1222 NC_002937.3 1312689 1313216 D hypothetical protein 1312689..1313216 Desulfovibrio vulgaris str. Hildenborough 2796680 YP_010442.2 CDS DVU1223 NC_002937.3 1313384 1314952 R identified by similarity to SP:O27068; match to protein family HMM PF02624; hypothetical protein complement(1313384..1314952) Desulfovibrio vulgaris str. Hildenborough 2796681 YP_010443.1 CDS nfo NC_002937.3 1315670 1316518 D identified by similarity to SP:P12638; match to protein family HMM PF01261; match to protein family HMM TIGR00587; endonuclease IV 1315670..1316518 Desulfovibrio vulgaris str. Hildenborough 2794119 YP_010444.1 CDS DVU1225 NC_002937.3 1317005 1317457 R hypothetical protein complement(1317005..1317457) Desulfovibrio vulgaris str. Hildenborough 2794120 YP_010445.1 CDS DVU1226 NC_002937.3 1317469 1317564 D hypothetical protein 1317469..1317564 Desulfovibrio vulgaris str. Hildenborough 2794121 YP_010446.1 CDS DVU1227 NC_002937.3 1317647 1317760 D hypothetical protein 1317647..1317760 Desulfovibrio vulgaris str. Hildenborough 2794122 YP_010447.1 CDS tpX NC_002937.3 1317780 1318298 R identified by similarity to SP:P37901; match to protein family HMM PF00578; thiol peroxidase complement(1317780..1318298) Desulfovibrio vulgaris str. Hildenborough 2794123 YP_010448.1 CDS DVU1229 NC_002937.3 1318295 1318456 R hypothetical protein complement(1318295..1318456) Desulfovibrio vulgaris str. Hildenborough 2794124 YP_010449.1 CDS DVU1230 NC_002937.3 1318494 1318604 D hypothetical protein 1318494..1318604 Desulfovibrio vulgaris str. Hildenborough 2794125 YP_010450.1 CDS amt NC_002937.3 1318601 1319809 D identified by similarity to SP:Q07429; match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 1318601..1319809 Desulfovibrio vulgaris str. Hildenborough 2794126 YP_010451.1 CDS glnB-1 NC_002937.3 1319932 1320270 D identified by similarity to SP:P21193; match to protein family HMM PF00543; nitrogen regulatory protein P-II 1319932..1320270 Desulfovibrio vulgaris str. Hildenborough 2794127 YP_010452.1 CDS DVU1233 NC_002937.3 1320326 1323046 D identified by match to protein family HMM PF01842; match to protein family HMM PF01966; protein-P-II uridylyltransferase 1320326..1323046 Desulfovibrio vulgaris str. Hildenborough 2794410 YP_010453.1 CDS DVU1234 NC_002937.3 1323117 1323848 D identified by match to protein family HMM PF01925; hypothetical protein 1323117..1323848 Desulfovibrio vulgaris str. Hildenborough 2794411 YP_010454.1 CDS DVU1235 NC_002937.3 1324232 1324852 D hypothetical protein 1324232..1324852 Desulfovibrio vulgaris str. Hildenborough 2794412 YP_010455.1 CDS DVU1236 NC_002937.3 1325232 1325975 R identified by similarity to SP:Q52815; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(1325232..1325975) Desulfovibrio vulgaris str. Hildenborough 2794413 YP_010456.1 CDS DVU1237 NC_002937.3 1325962 1326732 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease complement(1325962..1326732) Desulfovibrio vulgaris str. Hildenborough 2794414 YP_010457.1 CDS DVU1238 NC_002937.3 1326839 1327579 R identified by similarity to SP:P30859; match to protein family HMM PF00497; amino acid ABC transporter periplasmic amino acid-binding protein complement(1326839..1327579) Desulfovibrio vulgaris str. Hildenborough 2794415 YP_010458.1 CDS DVU1239 NC_002937.3 1327711 1328313 R identified by similarity to GP:5458792; match to protein family HMM PF03956; hypothetical protein complement(1327711..1328313) Desulfovibrio vulgaris str. Hildenborough 2794416 YP_010459.1 CDS DVU1240 NC_002937.3 1328303 1328710 R hypothetical protein complement(1328303..1328710) Desulfovibrio vulgaris str. Hildenborough 2794417 YP_010460.1 CDS DVU1241 NC_002937.3 1329016 1329333 D identified by similarity to OMNI:NTL01FN1126; hypothetical protein 1329016..1329333 Desulfovibrio vulgaris str. Hildenborough 2794418 YP_010461.1 CDS DVU1242 NC_002937.3 1329456 1330277 R identified by similarity to SP:P76506; match to protein family HMM PF04333; vacJ lipoprotein complement(1329456..1330277) Desulfovibrio vulgaris str. Hildenborough 2794419 YP_010462.1 CDS DVU1243 NC_002937.3 1330286 1330918 R identified by similarity to GP:22799047; hypothetical protein complement(1330286..1330918) Desulfovibrio vulgaris str. Hildenborough 2795024 YP_010463.1 CDS DVU1244 NC_002937.3 1330922 1331368 R identified by similarity to OMNI:NTL01RS2960; match to protein family HMM PF02470; hypothetical protein complement(1330922..1331368) Desulfovibrio vulgaris str. Hildenborough 2795025 YP_010464.1 CDS DVU1245 NC_002937.3 1331477 1332301 R identified by similarity to SP:P45393; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1331477..1332301) Desulfovibrio vulgaris str. Hildenborough 2795026 YP_010465.1 CDS DVU1246 NC_002937.3 1332313 1333116 R identified by similarity to OMNI:NTL01AA00252; match to protein family HMM PF02405; match to protein family HMM TIGR00056; hypothetical protein complement(1332313..1333116) Desulfovibrio vulgaris str. Hildenborough 2795027 YP_010466.1 CDS DVU1247 NC_002937.3 1333148 1333969 R hypothetical protein complement(1333148..1333969) Desulfovibrio vulgaris str. Hildenborough 2795028 YP_010467.1 CDS argS NC_002937.3 1333990 1335645 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1333990..1335645) Desulfovibrio vulgaris str. Hildenborough 2795029 YP_010468.1 CDS fabD NC_002937.3 1335876 1336829 R identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-ACP transacylase complement(1335876..1336829) Desulfovibrio vulgaris str. Hildenborough 2795030 YP_010469.1 CDS gidB NC_002937.3 1336980 1337636 D identified by similarity to SP:P17113; methyltransferase GidB 1336980..1337636 Desulfovibrio vulgaris str. Hildenborough 2795031 YP_010470.1 CDS DVU1251 NC_002937.3 1337597 1337815 R hypothetical protein complement(1337597..1337815) Desulfovibrio vulgaris str. Hildenborough 2795032 YP_010471.1 CDS DVU1252 NC_002937.3 1337944 1340220 D hypothetical protein 1337944..1340220 Desulfovibrio vulgaris str. Hildenborough 2794598 YP_010472.1 CDS DVU1253 NC_002937.3 1340271 1340399 R hypothetical protein complement(1340271..1340399) Desulfovibrio vulgaris str. Hildenborough 2794599 YP_010473.1 CDS DVU1254 NC_002937.3 1340438 1340908 R identified by similarity to OMNI:NTL03SA0024; match to protein family HMM PF02590; hypothetical protein complement(1340438..1340908) Desulfovibrio vulgaris str. Hildenborough 2794600 YP_010474.1 CDS DVU1255 NC_002937.3 1341261 1341893 D identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1341261..1341893 Desulfovibrio vulgaris str. Hildenborough 2794601 YP_010475.1 CDS DVU1256 NC_002937.3 1342002 1343090 R identified by match to protein family HMM PF01075; heptosyltransferase complement(1342002..1343090) Desulfovibrio vulgaris str. Hildenborough 2794602 YP_010476.1 CDS DVU1257 NC_002937.3 1343358 1343630 D identified by match to protein family HMM PF00076; RNA-binding protein 1343358..1343630 Desulfovibrio vulgaris str. Hildenborough 2794603 YP_010477.1 CDS glnN NC_002937.3 1343777 1345957 R identified by similarity to GP:9651982; match to protein family HMM PF00120; glutamine synthetase complement(1343777..1345957) Desulfovibrio vulgaris str. Hildenborough 2794604 YP_010478.1 CDS DVU1259 NC_002937.3 1346082 1346186 D hypothetical protein 1346082..1346186 Desulfovibrio vulgaris str. Hildenborough 2794605 YP_010479.1 CDS DVU1260 NC_002937.3 1346657 1347940 D identified by similarity to GP:9716643; match to protein family HMM PF03349; outer membrane protein P1 1346657..1347940 Desulfovibrio vulgaris str. Hildenborough 2794606 YP_010480.1 CDS DVU1261 NC_002937.3 1348254 1350014 R identified by similarity to SP:P45754; hypothetical protein complement(1348254..1350014) Desulfovibrio vulgaris str. Hildenborough 2794607 YP_010481.1 CDS DVU1262 NC_002937.3 1350023 1351132 R identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT complement(1350023..1351132) Desulfovibrio vulgaris str. Hildenborough 2793582 YP_010482.1 CDS pppA NC_002937.3 1351308 1352111 D identified by similarity to SP:P31712; similarity to SP:Q46836; type IV prepilin-like proteins leader peptidase 1351308..1352111 Desulfovibrio vulgaris str. Hildenborough 2793583 YP_010483.1 CDS DVU1264 NC_002937.3 1352419 1353180 R identified by match to protein family HMM PF01464; transglycosylase complement(1352419..1353180) Desulfovibrio vulgaris str. Hildenborough 2793584 YP_010484.1 CDS DVU1265 NC_002937.3 1353191 1353940 D hypothetical protein 1353191..1353940 Desulfovibrio vulgaris str. Hildenborough 2793585 YP_010485.1 CDS DVU1266 NC_002937.3 1354391 1357828 R hypothetical protein complement(1354391..1357828) Desulfovibrio vulgaris str. Hildenborough 2793586 YP_010486.1 CDS DVU1267 NC_002937.3 1357839 1358522 R hypothetical protein complement(1357839..1358522) Desulfovibrio vulgaris str. Hildenborough 2793587 YP_010487.1 CDS DVU1268 NC_002937.3 1358519 1358932 R hypothetical protein complement(1358519..1358932) Desulfovibrio vulgaris str. Hildenborough 2793588 YP_010488.1 CDS DVU1269 NC_002937.3 1359012 1359146 D hypothetical protein 1359012..1359146 Desulfovibrio vulgaris str. Hildenborough 2793589 YP_010489.1 CDS DVU1270 NC_002937.3 1359233 1360513 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein complement(1359233..1360513) Desulfovibrio vulgaris str. Hildenborough 2793590 YP_003858608.1 CDS DVU4015 NC_002937.3 1360581 1360913 R hypothetical protein complement(1360581..1360913) Desulfovibrio vulgaris str. Hildenborough 9714855 YP_010490.1 CDS DVU1271 NC_002937.3 1361119 1362345 R identified by similarity to GP:4139238; match to protein family HMM PF00482; general secretion pathway protein F complement(1361119..1362345) Desulfovibrio vulgaris str. Hildenborough 2793591 YP_010491.1 CDS DVU1272 NC_002937.3 1362349 1364070 R identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157; general secretion pathway protein E complement(1362349..1364070) Desulfovibrio vulgaris str. Hildenborough 2794262 YP_010492.1 CDS DVU1273 NC_002937.3 1364359 1365933 R identified by match to protein family HMM PF00263; match to protein family HMM PF03958; type II/III secretion system protein complement(1364359..1365933) Desulfovibrio vulgaris str. Hildenborough 2794263 YP_010493.1 CDS DVU1274 NC_002937.3 1365953 1366396 R hypothetical protein complement(1365953..1366396) Desulfovibrio vulgaris str. Hildenborough 2794264 YP_010494.1 CDS DVU1275 NC_002937.3 1366452 1367012 R hypothetical protein complement(1366452..1367012) Desulfovibrio vulgaris str. Hildenborough 2794265 YP_010495.1 CDS DVU1276 NC_002937.3 1367009 1368928 R hypothetical protein complement(1367009..1368928) Desulfovibrio vulgaris str. Hildenborough 2794266 YP_010496.1 CDS DVU1277 NC_002937.3 1369213 1369350 D hypothetical protein 1369213..1369350 Desulfovibrio vulgaris str. Hildenborough 2794267 YP_010497.1 CDS ftsH NC_002937.3 1369986 1371956 D identified by similarity to GP:5531227; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241; cell division protein FtsH 1369986..1371956 Desulfovibrio vulgaris str. Hildenborough 2794269 YP_010498.1 CDS folP NC_002937.3 1371953 1372813 D identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 1371953..1372813 Desulfovibrio vulgaris str. Hildenborough 2794345 YP_010499.1 CDS DVU1280 NC_002937.3 1372822 1373568 D identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 1372822..1373568 Desulfovibrio vulgaris str. Hildenborough 2794346 YP_010500.1 CDS DVU1281 NC_002937.3 1373570 1374472 D identified by similarity to OMNI:NTL01TT2044; hypothetical protein 1373570..1374472 Desulfovibrio vulgaris str. Hildenborough 2794347 YP_010501.1 CDS glmM NC_002937.3 1374532 1375884 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1374532..1375884 Desulfovibrio vulgaris str. Hildenborough 2794348 YP_010502.1 CDS galU NC_002937.3 1375922 1376800 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 1375922..1376800 Desulfovibrio vulgaris str. Hildenborough 2794349 YP_010503.1 CDS priA NC_002937.3 1376876 1379254 D identified by match to protein family HMM PF00271; match to protein family HMM TIGR00595; primosomal protein n' 1376876..1379254 Desulfovibrio vulgaris str. Hildenborough 2794350 YP_010504.1 CDS DVU1285 NC_002937.3 1379291 1379896 D identified by match to protein family HMM PF00072; response regulator 1379291..1379896 Desulfovibrio vulgaris str. Hildenborough 2794351 YP_010505.1 CDS DVU1286 NC_002937.3 1380084 1381247 R identified by match to protein family HMM PF03916; reductase, transmembrane subunit complement(1380084..1381247) Desulfovibrio vulgaris str. Hildenborough 2794352 YP_010506.1 CDS DVU1287 NC_002937.3 1381259 1382044 R identified by match to protein family HMM PF00037; reductase, iron-sulfur binding subunit complement(1381259..1382044) Desulfovibrio vulgaris str. Hildenborough 2794740 YP_010507.1 CDS DVU1288 NC_002937.3 1382044 1382424 R identified by similarity to OMNI:AF0503; cytochrome c family protein complement(1382044..1382424) Desulfovibrio vulgaris str. Hildenborough 2794741 YP_010508.1 CDS DVU1289 NC_002937.3 1382427 1384037 R identified by match to protein family HMM PF00037; reductase, iron-sulfur binding subunit complement(1382427..1384037) Desulfovibrio vulgaris str. Hildenborough 2794742 YP_010509.1 CDS DVU1290 NC_002937.3 1384047 1385051 R identified by match to protein family HMM PF02665; nitrate reductase subunit gamma complement(1384047..1385051) Desulfovibrio vulgaris str. Hildenborough 2794743 YP_010510.2 CDS DVU1291 NC_002937.3 1385086 1385613 R hypothetical protein complement(1385086..1385613) Desulfovibrio vulgaris str. Hildenborough 2794744 YP_010511.1 CDS DVU1292 NC_002937.3 1385555 1385728 R hypothetical protein complement(1385555..1385728) Desulfovibrio vulgaris str. Hildenborough 2794745 YP_003858609.1 CDS DVU4003 NC_002937.3 1385824 1386354 R hypothetical protein complement(1385824..1386354) Desulfovibrio vulgaris str. Hildenborough 9714854 YP_010513.1 CDS DVU1294 NC_002937.3 1386862 1387560 D identified by similarity to OMNI:CT0704; match to protein family HMM PF01863; hypothetical protein 1386862..1387560 Desulfovibrio vulgaris str. Hildenborough 2794747 YP_010514.1 CDS sat NC_002937.3 1387712 1388995 R identified by similarity to SP:P56864; match to protein family HMM PF01747; match to protein family HMM TIGR00339; sulfate adenylyltransferase complement(1387712..1388995) Desulfovibrio vulgaris str. Hildenborough 2794748 YP_010515.1 CDS DVU1296 NC_002937.3 1388988 1389119 D hypothetical protein 1388988..1389119 Desulfovibrio vulgaris str. Hildenborough 2794749 YP_010516.1 CDS DVU1297 NC_002937.3 1389116 1389268 D hypothetical protein 1389116..1389268 Desulfovibrio vulgaris str. Hildenborough 2795185 YP_010517.1 CDS rpsL NC_002937.3 1389633 1390004 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1389633..1390004 Desulfovibrio vulgaris str. Hildenborough 2795186 YP_010518.1 CDS rpsG NC_002937.3 1390020 1390490 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1390020..1390490 Desulfovibrio vulgaris str. Hildenborough 2795187 YP_010519.1 CDS fusA-1 NC_002937.3 1390506 1392581 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1390506..1392581 Desulfovibrio vulgaris str. Hildenborough 2795188 YP_010520.1 CDS DVU1301 NC_002937.3 1393042 1393224 D hypothetical protein 1393042..1393224 Desulfovibrio vulgaris str. Hildenborough 2795189 YP_010521.1 CDS rpsJ NC_002937.3 1393231 1393548 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1393231..1393548 Desulfovibrio vulgaris str. Hildenborough 2795190 YP_010522.1 CDS rplC NC_002937.3 1393561 1394190 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1393561..1394190 Desulfovibrio vulgaris str. Hildenborough 2795191 YP_010523.1 CDS rplD NC_002937.3 1394209 1394829 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1394209..1394829 Desulfovibrio vulgaris str. Hildenborough 2795192 YP_010524.1 CDS rplW NC_002937.3 1394795 1395133 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1394795..1395133 Desulfovibrio vulgaris str. Hildenborough 2795193 YP_010525.1 CDS rplB NC_002937.3 1395137 1395967 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1395137..1395967 Desulfovibrio vulgaris str. Hildenborough 2794189 YP_010526.1 CDS rpsS NC_002937.3 1395977 1396258 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1395977..1396258 Desulfovibrio vulgaris str. Hildenborough 2794190 YP_010527.1 CDS rplV NC_002937.3 1396271 1396609 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1396271..1396609 Desulfovibrio vulgaris str. Hildenborough 2794191 YP_010528.1 CDS rpsC NC_002937.3 1396614 1397252 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1396614..1397252 Desulfovibrio vulgaris str. Hildenborough 2794192 YP_010529.1 CDS rplP NC_002937.3 1397255 1397668 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1397255..1397668 Desulfovibrio vulgaris str. Hildenborough 2794193 YP_010530.1 CDS rpmC NC_002937.3 1397670 1397855 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1397670..1397855 Desulfovibrio vulgaris str. Hildenborough 2794194 YP_010531.1 CDS rpsQ NC_002937.3 1397866 1398132 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1397866..1398132 Desulfovibrio vulgaris str. Hildenborough 2794195 YP_010532.1 CDS rplN NC_002937.3 1398143 1398511 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1398143..1398511 Desulfovibrio vulgaris str. Hildenborough 2794380 YP_010533.1 CDS rplX NC_002937.3 1398521 1398844 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1398521..1398844 Desulfovibrio vulgaris str. Hildenborough 2794381 YP_010534.1 CDS rplE NC_002937.3 1398856 1399395 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1398856..1399395 Desulfovibrio vulgaris str. Hildenborough 2794382 YP_010535.1 CDS rpsN NC_002937.3 1399408 1399593 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 1399408..1399593 Desulfovibrio vulgaris str. Hildenborough 2794383 YP_010536.1 CDS rpsH NC_002937.3 1399612 1399992 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1399612..1399992 Desulfovibrio vulgaris str. Hildenborough 2794384 YP_010537.1 CDS rplF NC_002937.3 1400005 1400544 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1400005..1400544 Desulfovibrio vulgaris str. Hildenborough 2794385 YP_010538.1 CDS rplR NC_002937.3 1400558 1400917 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1400558..1400917 Desulfovibrio vulgaris str. Hildenborough 2794386 YP_010539.1 CDS rpsE NC_002937.3 1400937 1401428 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1400937..1401428 Desulfovibrio vulgaris str. Hildenborough 2794387 YP_010540.1 CDS rpmD NC_002937.3 1401438 1401608 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1401438..1401608 Desulfovibrio vulgaris str. Hildenborough 2794388 YP_010541.1 CDS rplO NC_002937.3 1401608 1402054 D late assembly protein; 50S ribosomal protein L15 1401608..1402054 Desulfovibrio vulgaris str. Hildenborough 2794617 YP_010542.1 CDS secY NC_002937.3 1402058 1403371 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1402058..1403371 Desulfovibrio vulgaris str. Hildenborough 2794618 YP_010543.1 CDS map NC_002937.3 1403373 1404152 D identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 1403373..1404152 Desulfovibrio vulgaris str. Hildenborough 2794619 YP_010544.1 CDS rpmJ NC_002937.3 1404246 1404359 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 1404246..1404359 Desulfovibrio vulgaris str. Hildenborough 2794620 YP_010545.1 CDS rpsM NC_002937.3 1404378 1404746 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1404378..1404746 Desulfovibrio vulgaris str. Hildenborough 2794621 YP_010546.1 CDS rpsK NC_002937.3 1404895 1405284 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1404895..1405284 Desulfovibrio vulgaris str. Hildenborough 2794622 YP_010547.1 CDS rpsD NC_002937.3 1405300 1405926 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1405300..1405926 Desulfovibrio vulgaris str. Hildenborough 2794623 YP_010548.1 CDS rpoA NC_002937.3 1405939 1406982 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1405939..1406982 Desulfovibrio vulgaris str. Hildenborough 2794624 YP_010549.1 CDS rplQ NC_002937.3 1406972 1407373 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1406972..1407373 Desulfovibrio vulgaris str. Hildenborough 2794625 YP_010550.1 CDS DVU1331 NC_002937.3 1407515 1408441 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1407515..1408441 Desulfovibrio vulgaris str. Hildenborough 2794578 YP_010551.1 CDS selD NC_002937.3 1408431 1409486 D selenoprotein; identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase, selenocysteine-containing 1408431..1409486 Desulfovibrio vulgaris str. Hildenborough 2794579 YP_010552.1 CDS DVU1333 NC_002937.3 1409514 1409639 D hypothetical protein 1409514..1409639 Desulfovibrio vulgaris str. Hildenborough 2794580 YP_010553.1 CDS tig NC_002937.3 1409785 1411086 D identified by similarity to SP:P80698; match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115; trigger factor 1409785..1411086 Desulfovibrio vulgaris str. Hildenborough 2794582 YP_010554.1 CDS clpP NC_002937.3 1411273 1411878 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1411273..1411878 Desulfovibrio vulgaris str. Hildenborough 2794583 YP_010555.1 CDS clpX NC_002937.3 1411889 1413142 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1411889..1413142 Desulfovibrio vulgaris str. Hildenborough 2794584 YP_010556.1 CDS lon NC_002937.3 1413261 1415726 D identified by similarity to SP:P08177; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La 1413261..1415726 Desulfovibrio vulgaris str. Hildenborough 2794585 YP_010557.1 CDS DVU1338 NC_002937.3 1415889 1416473 R identified by similarity to OMNI:SO3257; hypothetical protein complement(1415889..1416473) Desulfovibrio vulgaris str. Hildenborough 2794586 YP_010558.1 CDS DVU1339 NC_002937.3 1416774 1417604 R lipoprotein complement(1416774..1417604) Desulfovibrio vulgaris str. Hildenborough 2795138 YP_010559.1 CDS DVU1340 NC_002937.3 1417766 1418260 R Fur family transcriptional regulator complement(1417766..1418260) Desulfovibrio vulgaris str. Hildenborough 2795139 YP_010560.1 CDS DVU1341 NC_002937.3 1418257 1419081 R identified by similarity to GP:5019735; match to protein family HMM PF00950; cation ABC transporter permease complement(1418257..1419081) Desulfovibrio vulgaris str. Hildenborough 2795140 YP_010561.1 CDS DVU1342 NC_002937.3 1419083 1419889 R identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005; cation ABC transporter ATP-binding protein complement(1419083..1419889) Desulfovibrio vulgaris str. Hildenborough 2795141 YP_010562.1 CDS DVU1343 NC_002937.3 1419892 1420899 R identified by match to protein family HMM PF01297; cation ABC transporter periplasmc-binding protein complement(1419892..1420899) Desulfovibrio vulgaris str. Hildenborough 2795142 YP_010563.1 CDS ispG NC_002937.3 1421161 1422321 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1421161..1422321 Desulfovibrio vulgaris str. Hildenborough 2795143 YP_010564.1 CDS proS NC_002937.3 1422321 1424045 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1422321..1424045 Desulfovibrio vulgaris str. Hildenborough 2795144 YP_010565.1 CDS xseA NC_002937.3 1424092 1425489 D identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237; exodeoxyribonuclease VII large subunit 1424092..1425489 Desulfovibrio vulgaris str. Hildenborough 2795145 YP_010566.1 CDS DVU1347 NC_002937.3 1425518 1426432 D identified by match to protein family HMM PF01551; M24/M37 family peptidase 1425518..1426432 Desulfovibrio vulgaris str. Hildenborough 2795146 YP_010567.1 CDS xseB NC_002937.3 1426444 1426689 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1426444..1426689 Desulfovibrio vulgaris str. Hildenborough 2795147 YP_010568.1 CDS DVU1349 NC_002937.3 1426709 1427572 D identified by similarity to GP:5631295; match to protein family HMM PF00348; geranylgeranyl diphosphate synthase 1426709..1427572 Desulfovibrio vulgaris str. Hildenborough 2794915 YP_010569.1 CDS dxs NC_002937.3 1427612 1429537 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1427612..1429537 Desulfovibrio vulgaris str. Hildenborough 2794916 YP_010570.1 CDS DVU1351 NC_002937.3 1429780 1430382 R identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; MarC membrane protein complement(1429780..1430382) Desulfovibrio vulgaris str. Hildenborough 2794917 YP_010571.1 CDS DVU1352 NC_002937.3 1430512 1430901 R identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase complement(1430512..1430901) Desulfovibrio vulgaris str. Hildenborough 2794918 YP_010572.1 CDS dnaE NC_002937.3 1430903 1434397 R identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha complement(1430903..1434397) Desulfovibrio vulgaris str. Hildenborough 2794919 YP_010573.1 CDS DVU1354 NC_002937.3 1434594 1434851 D hypothetical protein 1434594..1434851 Desulfovibrio vulgaris str. Hildenborough 2794920 YP_010574.1 CDS DVU1355 NC_002937.3 1434875 1435243 D hypothetical protein 1434875..1435243 Desulfovibrio vulgaris str. Hildenborough 2794921 YP_010575.1 CDS DVU1356 NC_002937.3 1435251 1436054 D identified by match to protein family HMM PF01966; HD domain-containing protein 1435251..1436054 Desulfovibrio vulgaris str. Hildenborough 2794922 YP_010576.1 CDS DVU1357 NC_002937.3 1436051 1436677 D identified by similarity to OMNI:NTL01TT0547; hypothetical protein 1436051..1436677 Desulfovibrio vulgaris str. Hildenborough 2794923 YP_010577.1 CDS DVU1358 NC_002937.3 1436896 1437543 R identified by match to protein family HMM PF00702; HAD superfamily hydrolase complement(1436896..1437543) Desulfovibrio vulgaris str. Hildenborough 2794924 YP_010578.1 CDS DVU1359 NC_002937.3 1437585 1438868 R hypothetical protein complement(1437585..1438868) Desulfovibrio vulgaris str. Hildenborough 2795083 YP_010579.1 CDS galE NC_002937.3 1438843 1439838 D identified by match to protein family HMM PF01370; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1438843..1439838 Desulfovibrio vulgaris str. Hildenborough 2795084 YP_010580.1 CDS lpxB NC_002937.3 1439920 1441050 R identified by match to protein family HMM PF02684; match to protein family HMM TIGR00215; lipid A disaccharide synthase complement(1439920..1441050) Desulfovibrio vulgaris str. Hildenborough 2795085 YP_010581.1 CDS DVU1362 NC_002937.3 1441052 1442020 R hypothetical protein complement(1441052..1442020) Desulfovibrio vulgaris str. Hildenborough 2795086 YP_010582.1 CDS rfbD NC_002937.3 1442048 1442923 R identified by match to protein family HMM PF04321; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase complement(1442048..1442923) Desulfovibrio vulgaris str. Hildenborough 2795087 YP_010583.1 CDS rfbB NC_002937.3 1442920 1443942 R identified by match to protein family HMM PF01370; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase complement(1442920..1443942) Desulfovibrio vulgaris str. Hildenborough 2795088 YP_010584.1 CDS DVU1365 NC_002937.3 1444130 1444978 D identified by similarity to SP:Q05592; match to protein family HMM PF06180; heme-binding protein 1444130..1444978 Desulfovibrio vulgaris str. Hildenborough 2795089 YP_010585.1 CDS DVU1366 NC_002937.3 1445139 1446044 D lipoprotein 1445139..1446044 Desulfovibrio vulgaris str. Hildenborough 2795090 YP_010586.1 CDS tatA NC_002937.3 1446107 1446304 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase A complement(1446107..1446304) Desulfovibrio vulgaris str. Hildenborough 2795091 YP_010587.1 CDS DVU1368 NC_002937.3 1446416 1448038 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1446416..1448038 Desulfovibrio vulgaris str. Hildenborough 2795092 YP_010588.1 CDS DVU1369 NC_002937.3 1448110 1448484 D hypothetical protein 1448110..1448484 Desulfovibrio vulgaris str. Hildenborough 2793502 YP_010589.1 CDS DVU1370 NC_002937.3 1448497 1449369 D hypothetical protein 1448497..1449369 Desulfovibrio vulgaris str. Hildenborough 2793503 YP_010590.1 CDS DVU1371 NC_002937.3 1449380 1450054 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase 1449380..1450054 Desulfovibrio vulgaris str. Hildenborough 2793504 YP_010591.1 CDS DVU1372 NC_002937.3 1450159 1450461 D identified by similarity to OMNI:NTL01CJ00797; match to protein family HMM PF02325; hypothetical protein 1450159..1450461 Desulfovibrio vulgaris str. Hildenborough 2793505 YP_010592.1 CDS divIVA NC_002937.3 1450470 1450979 D identified by similarity to OMNI:NTL01BS1543; match to protein family HMM PF05103; cell-division initiation protein DivIVA 1450470..1450979 Desulfovibrio vulgaris str. Hildenborough 2793506 YP_010593.1 CDS DVU1374 NC_002937.3 1450972 1451292 D identified by similarity to OMNI:NT01MC2722; match to protein family HMM PF02594; hypothetical protein 1450972..1451292 Desulfovibrio vulgaris str. Hildenborough 2793507 YP_010594.1 CDS DVU1375 NC_002937.3 1451313 1451543 D hypothetical protein 1451313..1451543 Desulfovibrio vulgaris str. Hildenborough 2793508 YP_010595.1 CDS ilvB-2 NC_002937.3 1451544 1453235 D identified by similarity to SP:P00893; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit, biosynthetic type 1451544..1453235 Desulfovibrio vulgaris str. Hildenborough 2793509 YP_010596.1 CDS ilvH NC_002937.3 1453245 1453733 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1453245..1453733 Desulfovibrio vulgaris str. Hildenborough 2793510 YP_010597.1 CDS ilvC NC_002937.3 1453855 1454850 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1453855..1454850 Desulfovibrio vulgaris str. Hildenborough 2793511 YP_010598.1 CDS DVU1379 NC_002937.3 1454829 1454987 D hypothetical protein 1454829..1454987 Desulfovibrio vulgaris str. Hildenborough 2795120 YP_010599.1 CDS DVU1380 NC_002937.3 1455113 1455343 R hypothetical protein complement(1455113..1455343) Desulfovibrio vulgaris str. Hildenborough 2795121 YP_010600.1 CDS DVU1381 NC_002937.3 1455324 1455539 R hypothetical protein complement(1455324..1455539) Desulfovibrio vulgaris str. Hildenborough 2795122 YP_010601.1 CDS DVU1382 NC_002937.3 1455600 1455923 R selenoprotein; identified by match to protein family HMM PF01521; HesB family selenoprotein complement(1455600..1455923) Desulfovibrio vulgaris str. Hildenborough 2795123 YP_010602.1 CDS DVU1383 NC_002937.3 1456016 1456441 D hypothetical protein 1456016..1456441 Desulfovibrio vulgaris str. Hildenborough 2795124 YP_010603.1 CDS pyrR NC_002937.3 1456461 1456997 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1456461..1456997 Desulfovibrio vulgaris str. Hildenborough 2795125 YP_010604.1 CDS DVU1385 NC_002937.3 1457129 1457230 R hypothetical protein complement(1457129..1457230) Desulfovibrio vulgaris str. Hildenborough 2795126 YP_010605.1 CDS DVU1386 NC_002937.3 1457330 1458880 R hypothetical protein complement(1457330..1458880) Desulfovibrio vulgaris str. Hildenborough 2795127 YP_010606.1 CDS DVU1387 NC_002937.3 1459171 1460499 D identified by similarity to OMNI:NTL01CJ01237; hypothetical protein 1459171..1460499 Desulfovibrio vulgaris str. Hildenborough 2795128 YP_010607.1 CDS DVU1388 NC_002937.3 1460672 1461427 D identified by similarity to OMNI:SO1143; hypothetical protein 1460672..1461427 Desulfovibrio vulgaris str. Hildenborough 2795129 YP_010608.1 CDS DVU1389 NC_002937.3 1461664 1462797 R hypothetical protein complement(1461664..1462797) Desulfovibrio vulgaris str. Hildenborough 2794789 YP_010609.1 CDS DVU1390 NC_002937.3 1462982 1463449 R hypothetical protein complement(1462982..1463449) Desulfovibrio vulgaris str. Hildenborough 2794790 YP_010610.1 CDS DVU1391 NC_002937.3 1464007 1464384 D hypothetical protein 1464007..1464384 Desulfovibrio vulgaris str. Hildenborough 2794791 YP_010611.1 CDS DVU1392 NC_002937.3 1464357 1465154 D identified by match to protein family HMM PF00877; NLP/P60 family protein 1464357..1465154 Desulfovibrio vulgaris str. Hildenborough 2794792 YP_010612.1 CDS DVU1393 NC_002937.3 1465199 1465402 D hypothetical protein 1465199..1465402 Desulfovibrio vulgaris str. Hildenborough 2794793 YP_010613.1 CDS DVU1394 NC_002937.3 1465287 1465445 D hypothetical protein 1465287..1465445 Desulfovibrio vulgaris str. Hildenborough 2794794 YP_010614.1 CDS DVU1395 NC_002937.3 1465417 1465638 D identified by match to protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 1465417..1465638 Desulfovibrio vulgaris str. Hildenborough 2794795 YP_010615.1 CDS DVU1396 NC_002937.3 1465764 1466021 R identified by similarity to OMNI:NTL02MT00799; hypothetical protein complement(1465764..1466021) Desulfovibrio vulgaris str. Hildenborough 2794796 YP_010616.1 CDS bfr NC_002937.3 1466087 1466626 R identified by similarity to GP:14326006; match to protein family HMM PF00210; bacterioferritin complement(1466087..1466626) Desulfovibrio vulgaris str. Hildenborough 2794797 YP_010617.1 CDS DVU1398 NC_002937.3 1467022 1467864 R identified by match to protein family HMM PF00665; ISDvu2, transposase OrfB complement(1467022..1467864) Desulfovibrio vulgaris str. Hildenborough 2794798 YP_010618.1 CDS DVU1399 NC_002937.3 1467861 1468259 R identified by match to protein family HMM PF01527; ISDvu2, transposase OrfA complement(1467861..1468259) Desulfovibrio vulgaris str. Hildenborough 2794651 YP_010619.1 CDS DVU1400 NC_002937.3 1468349 1470241 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1468349..1470241 Desulfovibrio vulgaris str. Hildenborough 2794652 YP_010620.1 CDS DVU1401 NC_002937.3 1470407 1471372 R identified by match to protein family HMM PF03547; hypothetical protein complement(1470407..1471372) Desulfovibrio vulgaris str. Hildenborough 2794653 YP_010621.1 CDS DVU1402 NC_002937.3 1471525 1472520 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1471525..1472520 Desulfovibrio vulgaris str. Hildenborough 2794654 YP_010622.1 CDS cobO NC_002937.3 1472525 1473028 R cob(I)alamin adenosyltransferase complement(1472525..1473028) Desulfovibrio vulgaris str. Hildenborough 2794655 YP_010623.1 CDS DVU1404 NC_002937.3 1473006 1474112 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(1473006..1474112) Desulfovibrio vulgaris str. Hildenborough 2794656 YP_010624.1 CDS DVU1405 NC_002937.3 1474096 1474599 R hypothetical protein complement(1474096..1474599) Desulfovibrio vulgaris str. Hildenborough 2794657 YP_010625.1 CDS purM NC_002937.3 1474610 1475662 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1474610..1475662 Desulfovibrio vulgaris str. Hildenborough 2794658 YP_010626.1 CDS DVU1407 NC_002937.3 1475979 1477454 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(1475979..1477454) Desulfovibrio vulgaris str. Hildenborough 2794659 YP_010627.1 CDS DVU1408 NC_002937.3 1477612 1477914 D hypothetical protein 1477612..1477914 Desulfovibrio vulgaris str. Hildenborough 2794660 YP_010628.1 CDS DVU1409 NC_002937.3 1477932 1478396 D hypothetical protein 1477932..1478396 Desulfovibrio vulgaris str. Hildenborough 2794661 YP_010629.1 CDS DVU1410 NC_002937.3 1478673 1479545 R identified by similarity to OMNI:NT01MC3424; hypothetical protein complement(1478673..1479545) Desulfovibrio vulgaris str. Hildenborough 2794954 YP_010630.1 CDS thiC NC_002937.3 1480019 1481308 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1480019..1481308 Desulfovibrio vulgaris str. Hildenborough 2794955 YP_010631.1 CDS DVU1412 NC_002937.3 1481630 1482610 R Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase complement(1481630..1482610) Desulfovibrio vulgaris str. Hildenborough 2794956 YP_010632.1 CDS DVU1413 NC_002937.3 1482724 1484016 D identified by similarity to GP:3128261; hypothetical protein 1482724..1484016 Desulfovibrio vulgaris str. Hildenborough 2794957 YP_010633.1 CDS DVU1414 NC_002937.3 1484048 1487041 D identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1484048..1487041 Desulfovibrio vulgaris str. Hildenborough 2794958 YP_010634.1 CDS DVU1415 NC_002937.3 1487077 1490661 D identified by match to protein family HMM PF05170; AsmA family protein 1487077..1490661 Desulfovibrio vulgaris str. Hildenborough 2794959 YP_010635.1 CDS DVU1416 NC_002937.3 1488714 1489691 R hypothetical protein complement(1488714..1489691) Desulfovibrio vulgaris str. Hildenborough 2794960 YP_010636.1 CDS DVU1417 NC_002937.3 1490796 1491002 R hypothetical protein complement(1490796..1491002) Desulfovibrio vulgaris str. Hildenborough 2794961 YP_010637.1 CDS DVU1418 NC_002937.3 1491108 1492847 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 1491108..1492847 Desulfovibrio vulgaris str. Hildenborough 2794962 YP_010638.1 CDS DVU1419 NC_002937.3 1492844 1494223 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 1492844..1494223 Desulfovibrio vulgaris str. Hildenborough 2794963 YP_010639.1 CDS DVU1420 NC_002937.3 1494284 1494655 D identified by match to protein family HMM PF01627; Hpt domain-containing protein 1494284..1494655 Desulfovibrio vulgaris str. Hildenborough 2794681 YP_010640.1 CDS DVU1421 NC_002937.3 1494855 1495316 R hypothetical protein complement(1494855..1495316) Desulfovibrio vulgaris str. Hildenborough 2794682 YP_010641.1 CDS DVU1422 NC_002937.3 1495381 1496454 R identified by match to protein family HMM PF00691; OmpA family protein complement(1495381..1496454) Desulfovibrio vulgaris str. Hildenborough 2794683 YP_010642.1 CDS lpdA NC_002937.3 1496557 1497927 R identified by similarity to SP:O34324; match to protein family HMM PF00070; match to protein family HMM PF02852; 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase complement(1496557..1497927) Desulfovibrio vulgaris str. Hildenborough 2794684 YP_010643.1 CDS gcvPB NC_002937.3 1497917 1499362 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(1497917..1499362) Desulfovibrio vulgaris str. Hildenborough 2794685 YP_010644.1 CDS gcvPA NC_002937.3 1499359 1500690 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(1499359..1500690) Desulfovibrio vulgaris str. Hildenborough 2794686 YP_010645.1 CDS gcvH NC_002937.3 1500705 1501088 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1500705..1501088) Desulfovibrio vulgaris str. Hildenborough 2794687 YP_010646.1 CDS DVU1427 NC_002937.3 1501280 1501693 R identified by match to protein family HMM PF00072; response regulator complement(1501280..1501693) Desulfovibrio vulgaris str. Hildenborough 2794688 YP_010647.1 CDS pgm NC_002937.3 1501801 1503456 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(1501801..1503456) Desulfovibrio vulgaris str. Hildenborough 2794689 YP_010648.1 CDS ychF NC_002937.3 1503735 1504835 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1503735..1504835) Desulfovibrio vulgaris str. Hildenborough 2794690 YP_010649.1 CDS DVU1430 NC_002937.3 1505249 1507855 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(1505249..1507855) Desulfovibrio vulgaris str. Hildenborough 2794691 YP_010650.1 CDS DVU1431 NC_002937.3 1508049 1510244 D identified by match to protein family HMM PF01627; match to protein family HMM PF01740; hpt domain-containing protein/STAS domain-containing protein 1508049..1510244 Desulfovibrio vulgaris str. Hildenborough 2795157 YP_010651.1 CDS DVU1432 NC_002937.3 1510471 1513065 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(1510471..1513065) Desulfovibrio vulgaris str. Hildenborough 2795158 YP_010652.1 CDS DVU1433 NC_002937.3 1513064 1513255 D hypothetical protein 1513064..1513255 Desulfovibrio vulgaris str. Hildenborough 2795159 YP_010653.1 CDS DVU1434 NC_002937.3 1513301 1513666 R hypothetical protein complement(1513301..1513666) Desulfovibrio vulgaris str. Hildenborough 2795160 YP_010654.1 CDS DVU1435 NC_002937.3 1513729 1514913 R identified by similarity to OMNI:NTL03PA01784; hypothetical protein complement(1513729..1514913) Desulfovibrio vulgaris str. Hildenborough 2795161 YP_010655.1 CDS DVU1436 NC_002937.3 1515050 1515145 R hypothetical protein complement(1515050..1515145) Desulfovibrio vulgaris str. Hildenborough 2795162 YP_010656.1 CDS DVU1437 NC_002937.3 1515334 1515432 D hypothetical protein 1515334..1515432 Desulfovibrio vulgaris str. Hildenborough 2795163 YP_010657.1 CDS DVU1438 NC_002937.3 1515410 1516474 R identified by match to protein family HMM PF01656; cobyrinic acid a,c-diamide synthase complement(1515410..1516474) Desulfovibrio vulgaris str. Hildenborough 2795164 YP_010658.1 CDS DVU1439 NC_002937.3 1516553 1516705 R hypothetical protein complement(1516553..1516705) Desulfovibrio vulgaris str. Hildenborough 2795165 YP_010659.1 CDS rnc NC_002937.3 1516953 1517714 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1516953..1517714 Desulfovibrio vulgaris str. Hildenborough 2795166 YP_010660.1 CDS DVU1441 NC_002937.3 1517815 1518711 R identified by similarity to SP:P21990; match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin complement(1517815..1518711) Desulfovibrio vulgaris str. Hildenborough 2794568 YP_010661.1 CDS DVU1442 NC_002937.3 1518983 1519357 D identified by similarity to GP:2384651; flagellin FlaG 1518983..1519357 Desulfovibrio vulgaris str. Hildenborough 2794569 YP_010662.1 CDS flgE NC_002937.3 1519825 1521519 R identified by similarity to SP:O07884; match to protein family HMM PF00460; flagellar hook protein FlgE complement(1519825..1521519) Desulfovibrio vulgaris str. Hildenborough 2794570 YP_010663.1 CDS flgD NC_002937.3 1521577 1522374 R identified by similarity to SP:P16321; match to protein family HMM PF03963; basal-body rod modification protein FlgD complement(1521577..1522374) Desulfovibrio vulgaris str. Hildenborough 2794571 YP_010664.1 CDS DVU1445 NC_002937.3 1522387 1523982 R identified by match to protein family HMM PF02120; flagellar hook-length control domain-containing protein complement(1522387..1523982) Desulfovibrio vulgaris str. Hildenborough 2794572 YP_010665.1 CDS DVU1446 NC_002937.3 1524125 1525528 R identified by match to protein family HMM PF01075; heptosyltransferase complement(1524125..1525528) Desulfovibrio vulgaris str. Hildenborough 2794573 YP_010666.1 CDS DVU1447 NC_002937.3 1525525 1527234 R CgeB family protein complement(1525525..1527234) Desulfovibrio vulgaris str. Hildenborough 2794574 YP_010667.1 CDS DVU1448 NC_002937.3 1527231 1528367 R identified by similarity to OMNI:TM0735; match to protein family HMM PF03961; hypothetical protein complement(1527231..1528367) Desulfovibrio vulgaris str. Hildenborough 2794575 YP_010668.1 CDS DVU1449 NC_002937.3 1528388 1528732 R identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor complement(1528388..1528732) Desulfovibrio vulgaris str. Hildenborough 2794576 YP_010669.1 CDS DVU1450 NC_002937.3 1528690 1529130 R identified by similarity to SP:P70878; match to protein family HMM PF02518; anti-sigma factor complement(1528690..1529130) Desulfovibrio vulgaris str. Hildenborough 2794577 YP_010670.1 CDS DVU1451 NC_002937.3 1529130 1530299 R identified by match to protein family HMM PF00072; response regulator complement(1529130..1530299) Desulfovibrio vulgaris str. Hildenborough 2794817 YP_010671.1 CDS dtd NC_002937.3 1530262 1530750 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1530262..1530750) Desulfovibrio vulgaris str. Hildenborough 2794818 YP_010672.1 CDS fadD NC_002937.3 1530755 1532449 R identified by similarity to SP:P94547; match to protein family HMM PF00501; long-chain-fatty-acid--CoA ligase complement(1530755..1532449) Desulfovibrio vulgaris str. Hildenborough 2794819 YP_010673.1 CDS ispD NC_002937.3 1532607 1533794 R identified by match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151; match to protein family HMM TIGR00453; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(1532607..1533794) Desulfovibrio vulgaris str. Hildenborough 2794820 YP_010674.1 CDS DVU1455 NC_002937.3 1534209 1534952 R identified by similarity to OMNI:NTL01CJ00668; match to protein family HMM PF02591; hypothetical protein complement(1534209..1534952) Desulfovibrio vulgaris str. Hildenborough 2794822 YP_010675.1 CDS DVU1456 NC_002937.3 1534993 1536003 R identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; NIF3 family protein complement(1534993..1536003) Desulfovibrio vulgaris str. Hildenborough 2794823 YP_010676.1 CDS DVU1457 NC_002937.3 1536247 1537176 R identified by similarity to SP:Q05741; match to protein family HMM PF00070; thioredoxin reductase complement(1536247..1537176) Desulfovibrio vulgaris str. Hildenborough 2794825 YP_010677.2 CDS DVU1458 NC_002937.3 1537477 1538223 R identified by similarity to SP:P07800; chemotaxis protein CheZ complement(1537477..1538223) Desulfovibrio vulgaris str. Hildenborough 2794876 YP_010678.1 CDS DVU1459 NC_002937.3 1538486 1539658 R identified by match to protein family HMM PF01171; hypothetical protein complement(1538486..1539658) Desulfovibrio vulgaris str. Hildenborough 2794877 YP_010679.1 CDS DVU1460 NC_002937.3 1539694 1540029 R hypothetical protein complement(1539694..1540029) Desulfovibrio vulgaris str. Hildenborough 2794878 YP_010680.1 CDS hemA NC_002937.3 1540047 1541369 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1540047..1541369) Desulfovibrio vulgaris str. Hildenborough 2794879 YP_010681.1 CDS DVU1462 NC_002937.3 1541371 1542102 R identified by match to protein family HMM PF01578; cytochrome c assembly protein complement(1541371..1542102) Desulfovibrio vulgaris str. Hildenborough 2794880 YP_010682.1 CDS DVU1463 NC_002937.3 1542188 1542865 R identified by match to protein family HMM TIGR01470; siroheme synthase complement(1542188..1542865) Desulfovibrio vulgaris str. Hildenborough 2794881 YP_010683.1 CDS DVU1464 NC_002937.3 1542988 1544223 D identified by match to protein family HMM PF01075; heptosyltransferase 1542988..1544223 Desulfovibrio vulgaris str. Hildenborough 2794882 YP_010684.2 CDS DVU1465 NC_002937.3 1544267 1545595 D CgeB family protein 1544267..1545595 Desulfovibrio vulgaris str. Hildenborough 2794883 YP_010685.1 CDS argB NC_002937.3 1545702 1546628 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(1545702..1546628) Desulfovibrio vulgaris str. Hildenborough 2794884 YP_010686.1 CDS hslU NC_002937.3 1546644 1547969 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(1546644..1547969) Desulfovibrio vulgaris str. Hildenborough 2794885 YP_010687.1 CDS DVU1468 NC_002937.3 1548081 1549529 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; peptidase/PDZ domain-containing protein complement(1548081..1549529) Desulfovibrio vulgaris str. Hildenborough 2794137 YP_010688.1 CDS rpsA NC_002937.3 1549690 1551153 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1549690..1551153) Desulfovibrio vulgaris str. Hildenborough 2794138 YP_010689.1 CDS ppiC NC_002937.3 1551307 1551591 D identified by similarity to SP:P39159; match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase C 1551307..1551591 Desulfovibrio vulgaris str. Hildenborough 2794139 YP_010690.2 CDS DVU1471 NC_002937.3 1551664 1552092 D identified by match to protein family HMM PF00011; HSP20 family protein 1551664..1552092 Desulfovibrio vulgaris str. Hildenborough 2794140 YP_010691.2 CDS DVU1472 NC_002937.3 1552089 1554554 D identified by match to protein family HMM PF05362; ATP-dependent protease 1552089..1554554 Desulfovibrio vulgaris str. Hildenborough 2794141 YP_010692.1 CDS DVU1473 NC_002937.3 1554683 1554898 R hypothetical protein complement(1554683..1554898) Desulfovibrio vulgaris str. Hildenborough 2794142 YP_010693.1 CDS DVU1474 NC_002937.3 1555168 1555281 D hypothetical protein 1555168..1555281 Desulfovibrio vulgaris str. Hildenborough 2794143 YP_010694.1 CDS DVU1475 NC_002937.3 1555564 1556241 D identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; PhoU family protein 1555564..1556241 Desulfovibrio vulgaris str. Hildenborough 2794144 YP_010695.1 CDS DVU1476 NC_002937.3 1556492 1556701 R hypothetical protein complement(1556492..1556701) Desulfovibrio vulgaris str. Hildenborough 2794145 YP_010696.1 CDS DVU1477 NC_002937.3 1557005 1557733 D hypothetical protein 1557005..1557733 Desulfovibrio vulgaris str. Hildenborough 2794935 YP_010697.1 CDS DVU1478 NC_002937.3 1557759 1558655 D hypothetical protein 1557759..1558655 Desulfovibrio vulgaris str. Hildenborough 2794936 YP_010698.1 CDS DVU1479 NC_002937.3 1558664 1559671 D identified by similarity to GP:15025573; hypothetical protein 1558664..1559671 Desulfovibrio vulgaris str. Hildenborough 2794937 YP_010699.1 CDS DVU1480 NC_002937.3 1559712 1560071 D identified by similarity to OMNI:NTL01MM2929; hypothetical protein 1559712..1560071 Desulfovibrio vulgaris str. Hildenborough 2794938 YP_010700.1 CDS DVU1481 NC_002937.3 1560130 1560939 R identified by match to protein family HMM PF00565; nuclease domain-containing protein complement(1560130..1560939) Desulfovibrio vulgaris str. Hildenborough 2794939 YP_010701.1 CDS DVU1482 NC_002937.3 1560945 1561235 R hypothetical protein complement(1560945..1561235) Desulfovibrio vulgaris str. Hildenborough 2794940 YP_010702.1 CDS DVU1483 NC_002937.3 1561263 1561772 R tail fiber assembly protein complement(1561263..1561772) Desulfovibrio vulgaris str. Hildenborough 2794941 YP_010703.1 CDS DVU1484 NC_002937.3 1561765 1562103 R hypothetical protein complement(1561765..1562103) Desulfovibrio vulgaris str. Hildenborough 2794942 YP_010704.1 CDS DVU1485 NC_002937.3 1562106 1562741 R hypothetical protein complement(1562106..1562741) Desulfovibrio vulgaris str. Hildenborough 2794943 YP_010705.1 CDS DVU1486 NC_002937.3 1562738 1565050 R tail fiber protein, truncation complement(1562738..1565050) Desulfovibrio vulgaris str. Hildenborough 2794420 YP_010706.1 CDS DVU1487 NC_002937.3 1565472 1565900 R hypothetical protein complement(1565472..1565900) Desulfovibrio vulgaris str. Hildenborough 2794421 YP_010707.1 CDS DVU1488 NC_002937.3 1565890 1566795 R minor tail protein complement(1565890..1566795) Desulfovibrio vulgaris str. Hildenborough 2794422 YP_010708.1 CDS DVU1489 NC_002937.3 1566799 1567149 R hypothetical protein complement(1566799..1567149) Desulfovibrio vulgaris str. Hildenborough 2794423 YP_010709.1 CDS DVU1490 NC_002937.3 1567152 1569950 R tail tape measure protein complement(1567152..1569950) Desulfovibrio vulgaris str. Hildenborough 2794424 YP_010710.1 CDS DVU1491 NC_002937.3 1570123 1570305 D identified by similarity to OMNI:NTL01PF1323; hypothetical protein 1570123..1570305 Desulfovibrio vulgaris str. Hildenborough 2794425 YP_003858610.1 CDS DVU4002 NC_002937.3 1570354 1570758 D hypothetical protein 1570354..1570758 Desulfovibrio vulgaris str. Hildenborough 9714853 YP_010712.1 CDS DVU1493 NC_002937.3 1571178 1571561 R hypothetical protein complement(1571178..1571561) Desulfovibrio vulgaris str. Hildenborough 2794427 YP_010713.1 CDS DVU1494 NC_002937.3 1571570 1572733 R hypothetical protein complement(1571570..1572733) Desulfovibrio vulgaris str. Hildenborough 2794428 YP_010714.1 CDS DVU1495 NC_002937.3 1572745 1573089 R hypothetical protein complement(1572745..1573089) Desulfovibrio vulgaris str. Hildenborough 2794429 YP_010715.1 CDS DVU1496 NC_002937.3 1573134 1573631 R hypothetical protein complement(1573134..1573631) Desulfovibrio vulgaris str. Hildenborough 2794430 YP_010716.1 CDS DVU1497 NC_002937.3 1573624 1573950 R identified by match to protein family HMM TIGR01563; head-tail adaptor complement(1573624..1573950) Desulfovibrio vulgaris str. Hildenborough 2793648 YP_010717.1 CDS DVU1498 NC_002937.3 1573950 1574507 R identified by similarity to GP:17484030; hypothetical protein complement(1573950..1574507) Desulfovibrio vulgaris str. Hildenborough 2793649 YP_010718.1 CDS DVU1499 NC_002937.3 1574511 1574780 R hypothetical protein complement(1574511..1574780) Desulfovibrio vulgaris str. Hildenborough 2793650 YP_010719.1 CDS DVU1500 NC_002937.3 1574826 1576022 R identified by match to protein family HMM TIGR01554; HK97 family major capsid protein complement(1574826..1576022) Desulfovibrio vulgaris str. Hildenborough 2793651 YP_010720.1 CDS DVU1501 NC_002937.3 1576227 1576961 R identified by match to protein family HMM PF00574; ClpP protease complement(1576227..1576961) Desulfovibrio vulgaris str. Hildenborough 2793652 YP_010721.1 CDS DVU1502 NC_002937.3 1576954 1578213 R identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; HK97 family portal protein complement(1576954..1578213) Desulfovibrio vulgaris str. Hildenborough 2793653 YP_010722.1 CDS DVU1503 NC_002937.3 1578213 1579910 R identified by match to protein family HMM PF03354; terminase large subunit complement(1578213..1579910) Desulfovibrio vulgaris str. Hildenborough 2793654 YP_010723.1 CDS DVU1504 NC_002937.3 1579915 1580382 R identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558; terminase small subunit complement(1579915..1580382) Desulfovibrio vulgaris str. Hildenborough 2793655 YP_010724.1 CDS DVU1505 NC_002937.3 1580466 1580864 R identified by match to protein family HMM PF01844; holin complement(1580466..1580864) Desulfovibrio vulgaris str. Hildenborough 2793656 YP_010725.1 CDS DVU1506 NC_002937.3 1580884 1581132 R hypothetical protein complement(1580884..1581132) Desulfovibrio vulgaris str. Hildenborough 2793657 YP_010726.1 CDS DVU1507 NC_002937.3 1581129 1581479 R hypothetical protein complement(1581129..1581479) Desulfovibrio vulgaris str. Hildenborough 2793658 YP_010727.1 CDS DVU1508 NC_002937.3 1581479 1581886 R identified by similarity to GP:27550078; hypothetical protein complement(1581479..1581886) Desulfovibrio vulgaris str. Hildenborough 2793946 YP_010728.1 CDS DVU1509 NC_002937.3 1582050 1582439 R identified by similarity to GP:21913207; hypothetical protein complement(1582050..1582439) Desulfovibrio vulgaris str. Hildenborough 2793947 YP_010729.1 CDS DVU1510 NC_002937.3 1582432 1582995 R hypothetical protein complement(1582432..1582995) Desulfovibrio vulgaris str. Hildenborough 2793948 YP_010730.1 CDS DVU1511 NC_002937.3 1583104 1583334 R hypothetical protein complement(1583104..1583334) Desulfovibrio vulgaris str. Hildenborough 2793949 YP_010731.1 CDS DVU1512 NC_002937.3 1583337 1583597 R hypothetical protein complement(1583337..1583597) Desulfovibrio vulgaris str. Hildenborough 2793950 YP_010732.1 CDS DVU1513 NC_002937.3 1583584 1584078 R identified by similarity to GP:21202981; hypothetical protein complement(1583584..1584078) Desulfovibrio vulgaris str. Hildenborough 2793951 YP_010733.1 CDS DVU1514 NC_002937.3 1584247 1585464 R hypothetical protein complement(1584247..1585464) Desulfovibrio vulgaris str. Hildenborough 2793952 YP_010734.1 CDS DVU1515 NC_002937.3 1585461 1586924 R identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; type II DNA modification methyltransferase complement(1585461..1586924) Desulfovibrio vulgaris str. Hildenborough 2793953 YP_010735.1 CDS DVU1516 NC_002937.3 1587127 1587486 R hypothetical protein complement(1587127..1587486) Desulfovibrio vulgaris str. Hildenborough 2793954 YP_010736.1 CDS DVU1517 NC_002937.3 1587483 1587896 R transcriptional regulator cII complement(1587483..1587896) Desulfovibrio vulgaris str. Hildenborough 2793955 YP_010737.1 CDS DVU1518 NC_002937.3 1588107 1588397 R identified by match to protein family HMM PF01381; transcriptional regulator cI, truncation complement(1588107..1588397) Desulfovibrio vulgaris str. Hildenborough 2793956 YP_010738.1 CDS DVU1519 NC_002937.3 1588433 1589107 D identified by match to protein family HMM PF00717; transcriptional regulator 1588433..1589107 Desulfovibrio vulgaris str. Hildenborough 2793936 YP_010739.1 CDS DVU1520 NC_002937.3 1589165 1590151 D hypothetical protein 1589165..1590151 Desulfovibrio vulgaris str. Hildenborough 2793937 YP_010740.1 CDS DVU1521 NC_002937.3 1590141 1590320 D hypothetical protein 1590141..1590320 Desulfovibrio vulgaris str. Hildenborough 2793938 YP_010741.1 CDS DVU1522 NC_002937.3 1590750 1591145 D hypothetical protein 1590750..1591145 Desulfovibrio vulgaris str. Hildenborough 2793939 YP_010742.1 CDS DVU1523 NC_002937.3 1591191 1592219 D hypothetical protein 1591191..1592219 Desulfovibrio vulgaris str. Hildenborough 2793940 YP_010743.1 CDS DVU1524 NC_002937.3 1592222 1593118 D identified by similarity to GP:13491641; hypothetical protein 1592222..1593118 Desulfovibrio vulgaris str. Hildenborough 2793941 YP_010744.1 CDS DVU1525 NC_002937.3 1593138 1594130 D identified by similarity to OMNI:NTL02MA1432; hypothetical protein 1593138..1594130 Desulfovibrio vulgaris str. Hildenborough 2793942 YP_010745.1 CDS DVU1526 NC_002937.3 1594494 1594712 R hypothetical protein complement(1594494..1594712) Desulfovibrio vulgaris str. Hildenborough 2793943 YP_010746.1 CDS DVU1527 NC_002937.3 1594709 1595902 R identified by match to protein family HMM PF00589; phage integrase site specific recombinase complement(1594709..1595902) Desulfovibrio vulgaris str. Hildenborough 2793944 YP_010747.1 CDS DVU1528 NC_002937.3 1596516 1597001 R identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase complement(1596516..1597001) Desulfovibrio vulgaris str. Hildenborough 2793813 YP_010748.1 CDS DVU1529 NC_002937.3 1597222 1597878 R identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; decarboxylase complement(1597222..1597878) Desulfovibrio vulgaris str. Hildenborough 2793814 YP_010749.1 CDS DVU1530 NC_002937.3 1598015 1599625 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 1598015..1599625 Desulfovibrio vulgaris str. Hildenborough 2793815 YP_010750.1 CDS DVU1531 NC_002937.3 1599751 1600323 D identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 1599751..1600323 Desulfovibrio vulgaris str. Hildenborough 2793816 YP_010751.1 CDS coaD NC_002937.3 1600299 1600859 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1600299..1600859 Desulfovibrio vulgaris str. Hildenborough 2793817 YP_010752.1 CDS miaA NC_002937.3 1600856 1601785 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1600856..1601785 Desulfovibrio vulgaris str. Hildenborough 2793818 YP_010753.1 CDS DVU1534 NC_002937.3 1601935 1602447 D identified by similarity to OMNI:NTL01TV0482; match to protein family HMM PF04143; hypothetical protein 1601935..1602447 Desulfovibrio vulgaris str. Hildenborough 2793819 YP_010754.1 CDS DVU1535 NC_002937.3 1602447 1602968 D identified by similarity to OMNI:NTL01TT0071; hypothetical protein 1602447..1602968 Desulfovibrio vulgaris str. Hildenborough 2793820 YP_010755.1 CDS DVU1536 NC_002937.3 1603093 1604229 D identified by match to protein family HMM PF01464; Slt family transglycosylase 1603093..1604229 Desulfovibrio vulgaris str. Hildenborough 2793821 YP_010756.1 CDS DVU1537 NC_002937.3 1604359 1604925 D identified by match to protein family HMM PF03938; lipoprotein 1604359..1604925 Desulfovibrio vulgaris str. Hildenborough 2793822 YP_010757.1 CDS DVU1538 NC_002937.3 1605189 1605713 R hypothetical protein complement(1605189..1605713) Desulfovibrio vulgaris str. Hildenborough 2793688 YP_010758.1 CDS glpX NC_002937.3 1605816 1606799 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(1605816..1606799) Desulfovibrio vulgaris str. Hildenborough 2793689 YP_010759.1 CDS purU NC_002937.3 1606991 1607845 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(1606991..1607845) Desulfovibrio vulgaris str. Hildenborough 2793690 YP_010760.1 CDS DVU1541 NC_002937.3 1607951 1608352 R hypothetical protein complement(1607951..1608352) Desulfovibrio vulgaris str. Hildenborough 2793691 YP_010761.1 CDS DVU1542 NC_002937.3 1608530 1608757 R hypothetical protein complement(1608530..1608757) Desulfovibrio vulgaris str. Hildenborough 2793692 YP_010762.1 CDS hrpB NC_002937.3 1608966 1611509 D identified by similarity to SP:P37024; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970; ATP-dependent helicase HrpB 1608966..1611509 Desulfovibrio vulgaris str. Hildenborough 2793693 YP_010763.1 CDS DVU1544 NC_002937.3 1611814 1614255 R identified by similarity to SP:P77338; match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(1611814..1614255) Desulfovibrio vulgaris str. Hildenborough 2793694 YP_010764.1 CDS DVU1545 NC_002937.3 1614477 1621721 R identified by match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR01612; hemolysin-type calcium-binding repeat family protein complement(1614477..1621721) Desulfovibrio vulgaris str. Hildenborough 2793695 YP_010765.1 CDS DVU1546 NC_002937.3 1621692 1622027 D hypothetical protein 1621692..1622027 Desulfovibrio vulgaris str. Hildenborough 2793696 YP_010766.1 CDS DVU1547 NC_002937.3 1622188 1623813 R identified by match to protein family HMM PF00785; match to protein family HMM TIGR00229; sensory box protein complement(1622188..1623813) Desulfovibrio vulgaris str. Hildenborough 2793697 YP_010767.1 CDS DVU1548 NC_002937.3 1623964 1625178 D identified by match to protein family HMM PF03349; OmpP1/FadL/TodX family outer membrane transporter 1623964..1625178 Desulfovibrio vulgaris str. Hildenborough 2793698 YP_010768.1 CDS DVU1549 NC_002937.3 1625478 1626230 D identified by similarity to OMNI:NTL01SS00054; hypothetical protein 1625478..1626230 Desulfovibrio vulgaris str. Hildenborough 2794865 YP_010769.1 CDS DVU1550 NC_002937.3 1626312 1626968 R identified by match to protein family HMM PF00300; phosphoglycerate mutase complement(1626312..1626968) Desulfovibrio vulgaris str. Hildenborough 2794866 YP_010770.1 CDS DVU1551 NC_002937.3 1627026 1628432 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(1627026..1628432) Desulfovibrio vulgaris str. Hildenborough 2794867 YP_010771.1 CDS DVU1552 NC_002937.3 1628591 1629721 R identified by similarity to OMNI:NTL02SC5917; match to protein family HMM PF02625; hypothetical protein complement(1628591..1629721) Desulfovibrio vulgaris str. Hildenborough 2794868 YP_010772.1 CDS DVU1553 NC_002937.3 1629739 1631088 R AMP-binding protein complement(1629739..1631088) Desulfovibrio vulgaris str. Hildenborough 2794869 YP_010773.1 CDS DVU1554 NC_002937.3 1631085 1632716 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(1631085..1632716) Desulfovibrio vulgaris str. Hildenborough 2794870 YP_010774.1 CDS DVU1555 NC_002937.3 1632716 1633168 R hypothetical protein complement(1632716..1633168) Desulfovibrio vulgaris str. Hildenborough 2794871 YP_010775.1 CDS DVU1556 NC_002937.3 1633173 1634066 R hypothetical protein complement(1633173..1634066) Desulfovibrio vulgaris str. Hildenborough 2794872 YP_010776.1 CDS DVU1557 NC_002937.3 1634075 1634290 R hypothetical protein complement(1634075..1634290) Desulfovibrio vulgaris str. Hildenborough 2794873 YP_010777.1 CDS DVU1558 NC_002937.3 1634287 1636680 R identified by match to protein family HMM PF00037; match to protein family HMM PF02754; hypothetical protein complement(1634287..1636680) Desulfovibrio vulgaris str. Hildenborough 2794874 YP_010778.1 CDS mop NC_002937.3 1636751 1639471 R identified by similarity to SP:Q46509; match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; aldehyde oxidoreductase complement(1636751..1639471) Desulfovibrio vulgaris str. Hildenborough 2794875 YP_010779.1 CDS DVU1560 NC_002937.3 1639590 1640609 R identified by match to protein family HMM PF00994; molybdopterin biosynthesis protein complement(1639590..1640609) Desulfovibrio vulgaris str. Hildenborough 2795731 YP_010780.1 CDS DVU1561 NC_002937.3 1640840 1641211 D identified by match to protein family HMM PF02573; molybdenum-binding protein 1640840..1641211 Desulfovibrio vulgaris str. Hildenborough 2795732 YP_010781.1 CDS DVU1562 NC_002937.3 1641270 1644164 R identified by match to protein family HMM PF00672; HAMP domain-containing protein complement(1641270..1644164) Desulfovibrio vulgaris str. Hildenborough 2795733 YP_010782.1 CDS DVU1563 NC_002937.3 1644419 1647538 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 1644419..1647538 Desulfovibrio vulgaris str. Hildenborough 2795734 YP_010783.1 CDS DVU1564 NC_002937.3 1647670 1647948 D hypothetical protein 1647670..1647948 Desulfovibrio vulgaris str. Hildenborough 2795735 YP_003858611.1 CDS DVU4023 NC_002937.3 1648550 1648942 R hypothetical protein complement(1648550..1648942) Desulfovibrio vulgaris str. Hildenborough 9714860 YP_010785.1 CDS DVU1566 NC_002937.3 1648971 1649738 D identified by match to protein family HMM PF01507; phosphoadenosine phosphosulfate reductase 1648971..1649738 Desulfovibrio vulgaris str. Hildenborough 2793457 YP_010786.1 CDS DVU1567 NC_002937.3 1649748 1649960 R hypothetical protein complement(1649748..1649960) Desulfovibrio vulgaris str. Hildenborough 2793458 YP_010787.1 CDS DVU1568 NC_002937.3 1650124 1650633 D identified by similarity to SP:P23887; match to protein family HMM PF00210; ferritin 1650124..1650633 Desulfovibrio vulgaris str. Hildenborough 2793459 YP_010788.1 CDS porA NC_002937.3 1650706 1652442 D identified by similarity to GP:43498; match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate ferredoxin oxidoreductase subunit alpha 1650706..1652442 Desulfovibrio vulgaris str. Hildenborough 2793460 YP_010789.1 CDS porB NC_002937.3 1652439 1653293 D identified by similarity to GP:1565184; pyruvate ferredoxin oxidoreductase subunit beta 1652439..1653293 Desulfovibrio vulgaris str. Hildenborough 2793461 YP_010790.2 CDS rho NC_002937.3 1653748 1655037 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(1653748..1655037) Desulfovibrio vulgaris str. Hildenborough 2793462 YP_010791.1 CDS DVU1572 NC_002937.3 1655325 1655840 R identified by match to protein family HMM PF02559; CarD family transcriptional regulator complement(1655325..1655840) Desulfovibrio vulgaris str. Hildenborough 2793463 YP_010792.1 CDS pth NC_002937.3 1655955 1656560 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1655955..1656560) Desulfovibrio vulgaris str. Hildenborough 2793464 YP_010793.1 CDS rplY NC_002937.3 1656675 1657247 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(1656675..1657247) Desulfovibrio vulgaris str. Hildenborough 2793465 YP_010794.1 CDS prsA NC_002937.3 1657297 1658235 R identified by similarity to SP:P08330; match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-phosphate pyrophosphokinase complement(1657297..1658235) Desulfovibrio vulgaris str. Hildenborough 2793466 YP_010795.1 CDS ispE NC_002937.3 1658357 1659217 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(1658357..1659217) Desulfovibrio vulgaris str. Hildenborough 2796188 YP_010796.1 CDS hslV NC_002937.3 1659214 1659759 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(1659214..1659759) Desulfovibrio vulgaris str. Hildenborough 2796189 YP_010797.1 CDS DVU1578 NC_002937.3 1659921 1661366 R identified by match to protein family HMM PF01435; hypothetical protein complement(1659921..1661366) Desulfovibrio vulgaris str. Hildenborough 2796190 YP_010798.1 CDS cysS NC_002937.3 1661372 1662829 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(1661372..1662829) Desulfovibrio vulgaris str. Hildenborough 2796191 YP_010799.1 CDS DVU1580 NC_002937.3 1662846 1663289 R identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase complement(1662846..1663289) Desulfovibrio vulgaris str. Hildenborough 2796192 YP_010800.1 CDS DVU1581 NC_002937.3 1663303 1663653 R hypothetical protein complement(1663303..1663653) Desulfovibrio vulgaris str. Hildenborough 2796193 YP_010801.1 CDS DVU1582 NC_002937.3 1663668 1664507 R hypothetical protein complement(1663668..1664507) Desulfovibrio vulgaris str. Hildenborough 2796194 YP_010802.1 CDS DVU1583 NC_002937.3 1664504 1666192 R identified by match to protein family HMM PF00515; hypothetical protein complement(1664504..1666192) Desulfovibrio vulgaris str. Hildenborough 2796195 YP_010803.1 CDS DVU1584 NC_002937.3 1666207 1667277 R identified by match to protein family HMM PF00140; match to protein family HMM PF04542; match to protein family HMM PF04545; sigma 70 family protein complement(1666207..1667277) Desulfovibrio vulgaris str. Hildenborough 2796196 YP_010804.1 CDS DVU1585 NC_002937.3 1667483 1669897 D identified by similarity to SP:P37586; match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; vitamin B12-dependent methionine synthase 1667483..1669897 Desulfovibrio vulgaris str. Hildenborough 2796021 YP_010805.1 CDS DVU1586 NC_002937.3 1669924 1670391 D identified by similarity to SP:P36893; thioredoxin family protein 1669924..1670391 Desulfovibrio vulgaris str. Hildenborough 2796022 YP_010806.1 CDS DVU1587 NC_002937.3 1670391 1670855 D catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase 1670391..1670855 Desulfovibrio vulgaris str. Hildenborough 2796023 YP_010807.1 CDS hpt NC_002937.3 1670936 1671466 D identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 1670936..1671466 Desulfovibrio vulgaris str. Hildenborough 2796024 YP_010808.1 CDS DVU1589 NC_002937.3 1671497 1672285 D hypothetical protein 1671497..1672285 Desulfovibrio vulgaris str. Hildenborough 2796025 YP_010809.1 CDS radA NC_002937.3 1672298 1673668 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1672298..1673668 Desulfovibrio vulgaris str. Hildenborough 2796026 YP_010810.1 CDS DVU1591 NC_002937.3 1673771 1673902 D hypothetical protein 1673771..1673902 Desulfovibrio vulgaris str. Hildenborough 2796027 YP_010811.1 CDS DVU1592 NC_002937.3 1673985 1675727 D arginine N-succinyltransferase subunit beta 1673985..1675727 Desulfovibrio vulgaris str. Hildenborough 2796028 YP_010812.1 CDS cheY-1 NC_002937.3 1675754 1676116 D identified by similarity to GP:510670; match to protein family HMM PF00072; chemotaxis protein CheY 1675754..1676116 Desulfovibrio vulgaris str. Hildenborough 2796029 YP_010813.1 CDS cheA-1 NC_002937.3 1676184 1678310 D identified by similarity to SP:P07363; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA 1676184..1678310 Desulfovibrio vulgaris str. Hildenborough 2796030 YP_010814.2 CDS cheR-1 NC_002937.3 1678334 1679209 D identified by similarity to SP:P07801; match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein methyltransferase 1678334..1679209 Desulfovibrio vulgaris str. Hildenborough 2796031 YP_010815.1 CDS cheB-1 NC_002937.3 1679212 1680285 D identified by similarity to SP:P04042; match to protein family HMM PF00072; match to protein family HMM PF01339; protein-glutamate methylesterase CheB 1679212..1680285 Desulfovibrio vulgaris str. Hildenborough 2795951 YP_010816.1 CDS DVU1597 NC_002937.3 1680309 1680965 D identified by similarity to SP:Q05805; match to protein family HMM PF01077; match to protein family HMM PF03460; sulfite reductase, assimilatory-type 1680309..1680965 Desulfovibrio vulgaris str. Hildenborough 2795952 YP_010817.1 CDS DVU1598 NC_002937.3 1681361 1681705 R identified by similarity to SP:Q9FC38; match to protein family HMM PF02641; hypothetical protein complement(1681361..1681705) Desulfovibrio vulgaris str. Hildenborough 2795953 YP_010818.1 CDS crcB NC_002937.3 1681750 1682124 R identified by match to protein family HMM PF02537; match to protein family HMM TIGR00494; crcB protein complement(1681750..1682124) Desulfovibrio vulgaris str. Hildenborough 2795954 YP_010819.1 CDS DVU1600 NC_002937.3 1682163 1682774 D identified by match to protein family HMM PF01928; adenylate cyclase 1682163..1682774 Desulfovibrio vulgaris str. Hildenborough 2795955 YP_010820.1 CDS DVU1601 NC_002937.3 1682865 1683179 D identified by similarity to SP:Q9JV14; match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS 1682865..1683179 Desulfovibrio vulgaris str. Hildenborough 2795956 YP_010821.1 CDS clpA NC_002937.3 1683179 1685509 D identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpA 1683179..1685509 Desulfovibrio vulgaris str. Hildenborough 2795957 YP_010822.1 CDS aat NC_002937.3 1685506 1686210 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1685506..1686210 Desulfovibrio vulgaris str. Hildenborough 2795958 YP_010823.1 CDS DVU1604 NC_002937.3 1686217 1686795 R hypothetical protein complement(1686217..1686795) Desulfovibrio vulgaris str. Hildenborough 2795959 YP_010824.1 CDS uvrB NC_002937.3 1686795 1688828 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1686795..1688828 Desulfovibrio vulgaris str. Hildenborough 2795960 YP_010825.1 CDS DVU1606 NC_002937.3 1688825 1689877 D identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA family potassium uptake protein 1688825..1689877 Desulfovibrio vulgaris str. Hildenborough 2796059 YP_010826.1 CDS DVU1607 NC_002937.3 1689878 1690624 D hypothetical protein 1689878..1690624 Desulfovibrio vulgaris str. Hildenborough 2796060 YP_010827.1 CDS ligA NC_002937.3 1690678 1693077 D identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase 1690678..1693077 Desulfovibrio vulgaris str. Hildenborough 2796061 YP_010828.1 CDS dapB NC_002937.3 1693239 1694018 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1693239..1694018 Desulfovibrio vulgaris str. Hildenborough 2796062 YP_010829.1 CDS nadE NC_002937.3 1694019 1695698 D identified by similarity to SP:Q03638; match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; glutamine-dependent NAD+ synthetase 1694019..1695698 Desulfovibrio vulgaris str. Hildenborough 2796063 YP_010830.1 CDS DVU1611 NC_002937.3 1695875 1697803 R identified by match to protein family HMM PF00384; match to protein family HMM PF04879; molybdopterin oxidoreductase domain-containing protein complement(1695875..1697803) Desulfovibrio vulgaris str. Hildenborough 2796064 YP_010831.1 CDS DVU1612 NC_002937.3 1698084 1698515 R identified by match to protein family HMM PF01842; ACT domain-containing protein complement(1698084..1698515) Desulfovibrio vulgaris str. Hildenborough 2796065 YP_010832.2 CDS DVU1613 NC_002937.3 1698737 1699795 D unknown function; probable involvement in glutamate synthesis; glutamate synthase 1698737..1699795 Desulfovibrio vulgaris str. Hildenborough 2796066 YP_010833.1 CDS DVU1614 NC_002937.3 1699809 1700339 D identified by similarity to SP:P30132; match to protein family HMM PF00037; iron-sulfur cluster-binding protein 1699809..1700339 Desulfovibrio vulgaris str. Hildenborough 2796067 YP_010834.1 CDS paaK-2 NC_002937.3 1700751 1702058 R identified by similarity to SP:P76085; phenylacetate-coenzyme A ligase complement(1700751..1702058) Desulfovibrio vulgaris str. Hildenborough 2796068 YP_010835.1 CDS DVU1616 NC_002937.3 1702055 1702159 R hypothetical protein complement(1702055..1702159) Desulfovibrio vulgaris str. Hildenborough 2796069 YP_010836.1 CDS DVU1617 NC_002937.3 1702244 1702837 D identified by match to protein family HMM PF00881; nitroreductase 1702244..1702837 Desulfovibrio vulgaris str. Hildenborough 2795878 YP_010837.1 CDS DVU1618 NC_002937.3 1702850 1703254 D identified by similarity to GP:15158001; match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap family protein 1702850..1703254 Desulfovibrio vulgaris str. Hildenborough 2795879 YP_010838.1 CDS gpmA NC_002937.3 1703251 1704786 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1703251..1704786 Desulfovibrio vulgaris str. Hildenborough 2795880 YP_010839.1 CDS DVU1620 NC_002937.3 1704791 1705033 D hypothetical protein 1704791..1705033 Desulfovibrio vulgaris str. Hildenborough 2795881 YP_010840.1 CDS DVU1621 NC_002937.3 1705135 1705557 R hypothetical protein complement(1705135..1705557) Desulfovibrio vulgaris str. Hildenborough 2795882 YP_010841.1 CDS purQ NC_002937.3 1706229 1707038 R phosphoribosylformylglycinamidine synthase I complement(1706229..1707038) Desulfovibrio vulgaris str. Hildenborough 2795883 YP_010842.1 CDS pyrG NC_002937.3 1707295 1708938 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1707295..1708938 Desulfovibrio vulgaris str. Hildenborough 2795884 YP_010843.1 CDS kdsA NC_002937.3 1709008 1709829 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1709008..1709829 Desulfovibrio vulgaris str. Hildenborough 2795885 YP_010844.1 CDS DVU1625 NC_002937.3 1709819 1710346 D identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; YrbI family phosphatase 1709819..1710346 Desulfovibrio vulgaris str. Hildenborough 2795886 YP_010845.1 CDS DVU1626 NC_002937.3 1710343 1710987 D hypothetical protein 1710343..1710987 Desulfovibrio vulgaris str. Hildenborough 2795887 YP_003858612.1 CDS DVU4008 NC_002937.3 1711060 1711587 D hypothetical protein 1711060..1711587 Desulfovibrio vulgaris str. Hildenborough 9714852 YP_010846.1 CDS DVU1627 NC_002937.3 1711584 1712309 D identified by similarity to OMNI:DR2134; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1711584..1712309 Desulfovibrio vulgaris str. Hildenborough 2795888 YP_010847.1 CDS rpoN NC_002937.3 1712453 1713883 D identified by similarity to SP:P24255; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; RNA polymerase sigma-54 factor 1712453..1713883 Desulfovibrio vulgaris str. Hildenborough 2796092 YP_010848.1 CDS yfiA NC_002937.3 1713942 1714481 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 1713942..1714481 Desulfovibrio vulgaris str. Hildenborough 2796093 YP_010849.1 CDS DVU1630 NC_002937.3 1714491 1714940 D identified by match to protein family HMM PF00359; PTS system transporter subunit IIA 1714491..1714940 Desulfovibrio vulgaris str. Hildenborough 2796094 YP_010850.1 CDS DVU1631 NC_002937.3 1714949 1715860 D identified by similarity to SP:O06973; match to protein family HMM PF03668; hypothetical protein 1714949..1715860 Desulfovibrio vulgaris str. Hildenborough 2796095 YP_010851.1 CDS DVU1632 NC_002937.3 1715889 1716326 D identified by similarity to OMNI:BR2094; match to protein family HMM PF03610; PTS system transporter subunit IIA 1715889..1716326 Desulfovibrio vulgaris str. Hildenborough 2796096 YP_010852.1 CDS DVU1633 NC_002937.3 1716328 1716789 D identified by similarity to SP:P42909; match to protein family HMM PF03830; PTS system transporter subunit IIB 1716328..1716789 Desulfovibrio vulgaris str. Hildenborough 2796097 YP_010853.1 CDS DVU1634 NC_002937.3 1716815 1717486 D hypothetical protein 1716815..1717486 Desulfovibrio vulgaris str. Hildenborough 2796098 YP_010854.1 CDS DVU1635 NC_002937.3 1717473 1717577 D hypothetical protein 1717473..1717577 Desulfovibrio vulgaris str. Hildenborough 2796099 YP_010855.1 CDS ppaC NC_002937.3 1717621 1718541 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 1717621..1718541 Desulfovibrio vulgaris str. Hildenborough 2796100 YP_010856.1 CDS DVU1637 NC_002937.3 1718745 1719182 R hypothetical protein complement(1718745..1719182) Desulfovibrio vulgaris str. Hildenborough 2796101 YP_010857.1 CDS DVU1638 NC_002937.3 1719212 1719808 R hypothetical protein complement(1719212..1719808) Desulfovibrio vulgaris str. Hildenborough 2796102 YP_010858.1 CDS DVU1639 NC_002937.3 1719951 1720946 D hypothetical protein 1719951..1720946 Desulfovibrio vulgaris str. Hildenborough 2796135 YP_003858613.1 CDS DVU4000 NC_002937.3 1721042 1721284 R hypothetical protein complement(1721042..1721284) Desulfovibrio vulgaris str. Hildenborough 9714851 YP_010860.1 CDS DVU1641 NC_002937.3 1721579 1721902 D identified by similarity to SP:P51732; hypothetical protein 1721579..1721902 Desulfovibrio vulgaris str. Hildenborough 2796137 YP_010861.1 CDS DVU1642 NC_002937.3 1721906 1722895 D hypothetical protein 1721906..1722895 Desulfovibrio vulgaris str. Hildenborough 2796138 YP_010862.1 CDS DVU1644 NC_002937.3 1723708 1724823 R identified by match to protein family HMM PF03773; permease complement(1723708..1724823) Desulfovibrio vulgaris str. Hildenborough 2796141 YP_010863.1 CDS DVU1645 NC_002937.3 1724829 1725173 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(1724829..1725173) Desulfovibrio vulgaris str. Hildenborough 2796142 YP_010864.1 CDS arsC NC_002937.3 1725332 1725775 D identified by similarity to SP:P45947; match to protein family HMM PF01451; arsenate reductase 1725332..1725775 Desulfovibrio vulgaris str. Hildenborough 2796143 YP_010865.1 CDS lysA-1 NC_002937.3 1726001 1727239 R identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase complement(1726001..1727239) Desulfovibrio vulgaris str. Hildenborough 2795918 YP_010866.1 CDS DVU1648 NC_002937.3 1727313 1727753 R lipoprotein complement(1727313..1727753) Desulfovibrio vulgaris str. Hildenborough 2795919 YP_010867.1 CDS mutS NC_002937.3 1727737 1730454 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1727737..1730454) Desulfovibrio vulgaris str. Hildenborough 2795920 YP_010868.1 CDS DVU1650 NC_002937.3 1730618 1731742 R identified by similarity to SP:P45576; hypothetical protein complement(1730618..1731742) Desulfovibrio vulgaris str. Hildenborough 2795921 YP_010869.1 CDS DVU1651 NC_002937.3 1731757 1732128 R identified by similarity to OMNI:NTL01SM00387; hypothetical protein complement(1731757..1732128) Desulfovibrio vulgaris str. Hildenborough 2795922 YP_010870.1 CDS DVU1652 NC_002937.3 1732139 1732663 R identified by match to protein family HMM PF01230; HIT family protein complement(1732139..1732663) Desulfovibrio vulgaris str. Hildenborough 2795923 YP_010871.1 CDS DVU1653 NC_002937.3 1732726 1735440 R identified by similarity to SP:P42977; match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; polyA polymerase complement(1732726..1735440) Desulfovibrio vulgaris str. Hildenborough 2795924 YP_010872.1 CDS DVU1654 NC_002937.3 1735437 1736321 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase site specific recombinase complement(1735437..1736321) Desulfovibrio vulgaris str. Hildenborough 2795925 YP_010873.1 CDS DVU1655 NC_002937.3 1736595 1737761 D catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis; LL-diaminopimelate aminotransferase 1736595..1737761 Desulfovibrio vulgaris str. Hildenborough 2795926 YP_010874.1 CDS folK NC_002937.3 1737836 1738261 D identified by similarity to SP:P26281; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1737836..1738261 Desulfovibrio vulgaris str. Hildenborough 2795927 YP_010875.1 CDS DVU1657 NC_002937.3 1738286 1738585 D hypothetical protein 1738286..1738585 Desulfovibrio vulgaris str. Hildenborough 2795895 YP_010876.1 CDS DVU1658 NC_002937.3 1738843 1739490 D similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 1738843..1739490 Desulfovibrio vulgaris str. Hildenborough 2795896 YP_010877.1 CDS DVU1659 NC_002937.3 1740015 1740152 D hypothetical protein 1740015..1740152 Desulfovibrio vulgaris str. Hildenborough 2795897 YP_010878.1 CDS DVU1660 NC_002937.3 1740327 1741124 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(1740327..1741124) Desulfovibrio vulgaris str. Hildenborough 2795899 YP_010879.1 CDS DVU1661 NC_002937.3 1741334 1741528 D hypothetical protein 1741334..1741528 Desulfovibrio vulgaris str. Hildenborough 2795900 YP_010880.1 CDS DVU1662 NC_002937.3 1741571 1742713 D identified by match to protein family HMM PF03739; permease 1741571..1742713 Desulfovibrio vulgaris str. Hildenborough 2795901 YP_010881.1 CDS DVU1663 NC_002937.3 1742710 1743792 D identified by match to protein family HMM PF03739; permease 1742710..1743792 Desulfovibrio vulgaris str. Hildenborough 2795902 YP_010882.1 CDS engB NC_002937.3 1743911 1744561 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1743911..1744561) Desulfovibrio vulgaris str. Hildenborough 2795903 YP_010883.1 CDS aroQ NC_002937.3 1744706 1745173 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1744706..1745173 Desulfovibrio vulgaris str. Hildenborough 2795904 YP_010884.1 CDS efp NC_002937.3 1745214 1745771 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1745214..1745771 Desulfovibrio vulgaris str. Hildenborough 2795905 YP_010885.1 CDS DVU1667 NC_002937.3 1745901 1748231 D identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 1745901..1748231 Desulfovibrio vulgaris str. Hildenborough 2794389 YP_010886.1 CDS DVU1668 NC_002937.3 1748249 1748926 D identified by similarity to SP:P39178; match to protein family HMM PF03548; outer membrane lipoprotein carrier protein 1748249..1748926 Desulfovibrio vulgaris str. Hildenborough 2794390 YP_010887.2 CDS rluB NC_002937.3 1749106 1749984 R identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B complement(1749106..1749984) Desulfovibrio vulgaris str. Hildenborough 2794391 YP_010888.1 CDS DVU1670 NC_002937.3 1749981 1750619 R identified by similarity to OMNI:NTL03CP2236; hypothetical protein complement(1749981..1750619) Desulfovibrio vulgaris str. Hildenborough 2794392 YP_010889.1 CDS DVU1671 NC_002937.3 1750731 1752536 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1750731..1752536 Desulfovibrio vulgaris str. Hildenborough 2794393 YP_010890.1 CDS DVU1672 NC_002937.3 1752533 1753159 D identified by similarity to OMNI:NTL01FN1845; match to protein family HMM PF04028; hypothetical protein 1752533..1753159 Desulfovibrio vulgaris str. Hildenborough 2794394 YP_010891.2 CDS DVU1673 NC_002937.3 1753156 1754100 D acyltransferase 1753156..1754100 Desulfovibrio vulgaris str. Hildenborough 2794395 YP_010892.1 CDS DVU1674 NC_002937.3 1754716 1755330 D identified by similarity to SP:Q37906; match to protein family HMM PF00717; transcriptional regulator 1754716..1755330 Desulfovibrio vulgaris str. Hildenborough 2794396 YP_010893.1 CDS DVU1675 NC_002937.3 1755389 1755553 D hypothetical protein 1755389..1755553 Desulfovibrio vulgaris str. Hildenborough 2794397 YP_010894.1 CDS secG NC_002937.3 1755893 1756243 R identified by similarity to SP:P33582; match to protein family HMM PF03840; preprotein translocase subunit SecG complement(1755893..1756243) Desulfovibrio vulgaris str. Hildenborough 2794904 YP_010895.1 CDS tpiA NC_002937.3 1756281 1757036 R identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase complement(1756281..1757036) Desulfovibrio vulgaris str. Hildenborough 2794905 YP_010896.1 CDS rimI NC_002937.3 1757056 1757550 R identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase complement(1757056..1757550) Desulfovibrio vulgaris str. Hildenborough 2794906 YP_010897.1 CDS idi NC_002937.3 1757573 1758109 D identified by match to protein family HMM PF00293; isopentenyl-diphosphate delta-isomerase 1757573..1758109 Desulfovibrio vulgaris str. Hildenborough 2794907 YP_010898.1 CDS suhB NC_002937.3 1758067 1758858 R identified by similarity to SP:P22783; match to protein family HMM PF00459; inositol-1-monophosphatase complement(1758067..1758858) Desulfovibrio vulgaris str. Hildenborough 2794908 YP_010899.1 CDS mreB-2 NC_002937.3 1758877 1759899 R identified by similarity to SP:P13519; match to protein family HMM TIGR00904; rod shape-determining protein MreB complement(1758877..1759899) Desulfovibrio vulgaris str. Hildenborough 2794909 YP_010900.1 CDS DVU1682 NC_002937.3 1759899 1760933 R identified by match to protein family HMM PF01590; GAF domain-containing protein complement(1759899..1760933) Desulfovibrio vulgaris str. Hildenborough 2794910 YP_010901.1 CDS DVU1683 NC_002937.3 1761202 1762938 D hypothetical protein 1761202..1762938 Desulfovibrio vulgaris str. Hildenborough 2794911 YP_010902.2 CDS gcvT NC_002937.3 1762935 1764065 D identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528; glycine cleavage system T protein 1762935..1764065 Desulfovibrio vulgaris str. Hildenborough 2794912 YP_010903.1 CDS DVU1685 NC_002937.3 1764117 1764866 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1764117..1764866 Desulfovibrio vulgaris str. Hildenborough 2794913 YP_010904.1 CDS DVU1686 NC_002937.3 1764863 1766098 D identified by match to protein family HMM PF00004; recombination factor protein RarA 1764863..1766098 Desulfovibrio vulgaris str. Hildenborough 2794914 YP_010905.1 CDS DVU1687 NC_002937.3 1766095 1766802 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1766095..1766802 Desulfovibrio vulgaris str. Hildenborough 2795821 YP_010906.1 CDS DVU1688 NC_002937.3 1766799 1767608 D identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1766799..1767608 Desulfovibrio vulgaris str. Hildenborough 2795822 YP_010907.1 CDS DVU1689 NC_002937.3 1767793 1767978 D hypothetical protein 1767793..1767978 Desulfovibrio vulgaris str. Hildenborough 2795823 YP_010908.1 CDS DVU1690 NC_002937.3 1768176 1768745 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1768176..1768745 Desulfovibrio vulgaris str. Hildenborough 2795824 YP_010909.1 CDS DVU1691 NC_002937.3 1768959 1769066 D hypothetical protein 1768959..1769066 Desulfovibrio vulgaris str. Hildenborough 2795825 YP_010910.1 CDS DVU1692 NC_002937.3 1769045 1769440 R hypothetical protein complement(1769045..1769440) Desulfovibrio vulgaris str. Hildenborough 2795826 YP_010911.1 CDS gltX-1 NC_002937.3 1769611 1770585 R identified by similarity to SP:P22250; match to protein family HMM PF00749; glutamyl-tRNA synthetase complement(1769611..1770585) Desulfovibrio vulgaris str. Hildenborough 2795827 YP_010912.1 CDS DVU1694 NC_002937.3 1770879 1771088 R identified by match to protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein complement(1770879..1771088) Desulfovibrio vulgaris str. Hildenborough 2795829 YP_010913.1 CDS DVU1695 NC_002937.3 1771104 1771613 R tail fiber assembly protein complement(1771104..1771613) Desulfovibrio vulgaris str. Hildenborough 2795777 YP_010914.1 CDS DVU1696 NC_002937.3 1771606 1771974 R hypothetical protein complement(1771606..1771974) Desulfovibrio vulgaris str. Hildenborough 2795778 YP_010915.1 CDS DVU1697 NC_002937.3 1771977 1772555 R hypothetical protein complement(1771977..1772555) Desulfovibrio vulgaris str. Hildenborough 2795779 YP_010916.1 CDS DVU1698 NC_002937.3 1773086 1773571 R hypothetical protein complement(1773086..1773571) Desulfovibrio vulgaris str. Hildenborough 2795780 YP_010917.1 CDS DVU1699 NC_002937.3 1773938 1774057 D hypothetical protein 1773938..1774057 Desulfovibrio vulgaris str. Hildenborough 2795781 YP_010918.1 CDS DVU1700 NC_002937.3 1774325 1775572 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 1774325..1775572 Desulfovibrio vulgaris str. Hildenborough 2795782 YP_010919.1 CDS DVU1701 NC_002937.3 1775767 1776084 R hypothetical protein complement(1775767..1776084) Desulfovibrio vulgaris str. Hildenborough 2795783 YP_003858614.1 CDS DVU4024 NC_002937.3 1776136 1776639 D hypothetical protein 1776136..1776639 Desulfovibrio vulgaris str. Hildenborough 9714850 YP_010920.1 CDS DVU1702 NC_002937.3 1776998 1777741 R identified by similarity to GP:21114108; match to protein family HMM PF01863; hypothetical protein complement(1776998..1777741) Desulfovibrio vulgaris str. Hildenborough 2795784 YP_010921.1 CDS DVU1703 NC_002937.3 1777728 1781027 R identified by match to protein family HMM PF04313; match to protein family HMM TIGR00348; type I restriction-modification enzyme, R subunit complement(1777728..1781027) Desulfovibrio vulgaris str. Hildenborough 2795785 YP_010922.1 CDS DVU1704 NC_002937.3 1781206 1781433 R identified by similarity to OMNI:SAG0550; hypothetical protein complement(1781206..1781433) Desulfovibrio vulgaris str. Hildenborough 2795786 YP_010923.2 CDS DVU1705 NC_002937.3 1781460 1782710 R identified by match to protein family HMM PF01420; type I restriction-modification enzyme, S subunit complement(1781460..1782710) Desulfovibrio vulgaris str. Hildenborough 2795787 YP_010925.1 CDS DVU1707 NC_002937.3 1782760 1782969 R hypothetical protein complement(1782760..1782969) Desulfovibrio vulgaris str. Hildenborough 2795831 YP_010926.1 CDS DVU1708 NC_002937.3 1782972 1783985 R identified by similarity to OMNI:NTL01XC0464; hypothetical protein complement(1782972..1783985) Desulfovibrio vulgaris str. Hildenborough 2795832 YP_010927.1 CDS hsdM NC_002937.3 1783988 1785508 R identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit complement(1783988..1785508) Desulfovibrio vulgaris str. Hildenborough 2795833 YP_010928.1 CDS DVU1710 NC_002937.3 1785521 1786099 R identified by similarity to GP:21114103; hypothetical protein complement(1785521..1786099) Desulfovibrio vulgaris str. Hildenborough 2795834 YP_010929.1 CDS DVU1711 NC_002937.3 1786512 1786649 R hypothetical protein complement(1786512..1786649) Desulfovibrio vulgaris str. Hildenborough 2795835 YP_010930.1 CDS DVU1712 NC_002937.3 1786746 1788347 R hypothetical protein complement(1786746..1788347) Desulfovibrio vulgaris str. Hildenborough 2795836 YP_010931.1 CDS DVU1713 NC_002937.3 1788317 1788952 R hypothetical protein complement(1788317..1788952) Desulfovibrio vulgaris str. Hildenborough 2795837 YP_010932.1 CDS DVU1714 NC_002937.3 1788961 1791054 R identified by similarity to GP:13186158; hypothetical protein complement(1788961..1791054) Desulfovibrio vulgaris str. Hildenborough 2795838 YP_010933.1 CDS DVU1715 NC_002937.3 1791227 1791814 R hypothetical protein complement(1791227..1791814) Desulfovibrio vulgaris str. Hildenborough 2795839 YP_010934.1 CDS DVU1716 NC_002937.3 1791856 1792200 R hypothetical protein complement(1791856..1792200) Desulfovibrio vulgaris str. Hildenborough 2795840 YP_010935.1 CDS DVU1717 NC_002937.3 1792212 1792613 R hypothetical protein complement(1792212..1792613) Desulfovibrio vulgaris str. Hildenborough 2795841 YP_010936.1 CDS DVU1718 NC_002937.3 1792670 1793602 R hypothetical protein complement(1792670..1793602) Desulfovibrio vulgaris str. Hildenborough 2795766 YP_010937.1 CDS DVU1719 NC_002937.3 1793607 1794446 R hypothetical protein complement(1793607..1794446) Desulfovibrio vulgaris str. Hildenborough 2795767 YP_010938.1 CDS DVU1720 NC_002937.3 1794443 1794775 R hypothetical protein complement(1794443..1794775) Desulfovibrio vulgaris str. Hildenborough 2795768 YP_010939.1 CDS DVU1721 NC_002937.3 1794775 1796427 R hypothetical protein complement(1794775..1796427) Desulfovibrio vulgaris str. Hildenborough 2795769 YP_010940.1 CDS DVU1722 NC_002937.3 1796428 1796781 R hypothetical protein complement(1796428..1796781) Desulfovibrio vulgaris str. Hildenborough 2795770 YP_010941.1 CDS DVU1723 NC_002937.3 1796778 1797332 R hypothetical protein complement(1796778..1797332) Desulfovibrio vulgaris str. Hildenborough 2795771 YP_010942.1 CDS DVU1724 NC_002937.3 1797329 1798933 R phage protein complement(1797329..1798933) Desulfovibrio vulgaris str. Hildenborough 2795772 YP_010943.1 CDS DVU1725 NC_002937.3 1798920 1799528 R identified by similarity to GP:13346844; hypothetical protein complement(1798920..1799528) Desulfovibrio vulgaris str. Hildenborough 2795773 YP_010944.1 CDS DVU1726 NC_002937.3 1799664 1799912 R hypothetical protein complement(1799664..1799912) Desulfovibrio vulgaris str. Hildenborough 2795774 YP_010945.1 CDS DVU1727 NC_002937.3 1799909 1800259 R hypothetical protein complement(1799909..1800259) Desulfovibrio vulgaris str. Hildenborough 2795775 YP_010946.1 CDS DVU1728 NC_002937.3 1800259 1800675 R identified by similarity to GP:16506030; hypothetical protein complement(1800259..1800675) Desulfovibrio vulgaris str. Hildenborough 2795776 YP_010947.1 CDS DVU1729 NC_002937.3 1800946 1801224 D identified by similarity to GP:21203107; match to protein family HMM PF05015; killer protein 1800946..1801224 Desulfovibrio vulgaris str. Hildenborough 2795799 YP_010948.1 CDS DVU1730 NC_002937.3 1801234 1801539 D identified by match to protein family HMM PF01381; DNA-binding protein 1801234..1801539 Desulfovibrio vulgaris str. Hildenborough 2795800 YP_010949.1 CDS DVU1731 NC_002937.3 1801647 1801817 R hypothetical protein complement(1801647..1801817) Desulfovibrio vulgaris str. Hildenborough 2795801 YP_010950.1 CDS DVU1732 NC_002937.3 1801863 1802090 R hypothetical protein complement(1801863..1802090) Desulfovibrio vulgaris str. Hildenborough 2795802 YP_010951.1 CDS DVU1733 NC_002937.3 1803107 1803328 R hypothetical protein complement(1803107..1803328) Desulfovibrio vulgaris str. Hildenborough 2795803 YP_010952.1 CDS DVU1734 NC_002937.3 1804805 1804981 R hypothetical protein complement(1804805..1804981) Desulfovibrio vulgaris str. Hildenborough 2795804 YP_010953.1 CDS DVU1735 NC_002937.3 1805962 1806105 D hypothetical protein 1805962..1806105 Desulfovibrio vulgaris str. Hildenborough 2795805 YP_010954.1 CDS DVU1736 NC_002937.3 1806089 1806283 D hypothetical protein 1806089..1806283 Desulfovibrio vulgaris str. Hildenborough 2795806 YP_010955.1 CDS DVU1737 NC_002937.3 1806390 1806608 R identified by similarity to GP:12580916; hypothetical protein complement(1806390..1806608) Desulfovibrio vulgaris str. Hildenborough 2795807 YP_010956.1 CDS DVU1738 NC_002937.3 1806786 1807430 R identified by match to protein family HMM PF00589; phage integrase site specific recombinase complement(1806786..1807430) Desulfovibrio vulgaris str. Hildenborough 2795808 YP_010957.1 CDS DVU1739 NC_002937.3 1808056 1808148 R hypothetical protein complement(1808056..1808148) Desulfovibrio vulgaris str. Hildenborough 2795842 YP_010958.1 CDS DVU1740 NC_002937.3 1808578 1808979 R hypothetical protein complement(1808578..1808979) Desulfovibrio vulgaris str. Hildenborough 2795843 YP_010959.1 CDS DVU1741 NC_002937.3 1808976 1809947 R hypothetical protein complement(1808976..1809947) Desulfovibrio vulgaris str. Hildenborough 2795844 YP_010960.1 CDS DVU1742 NC_002937.3 1810417 1810656 D identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; prevent-host-death family protein 1810417..1810656 Desulfovibrio vulgaris str. Hildenborough 2795845 YP_010961.1 CDS DVU1743 NC_002937.3 1810662 1811099 R hypothetical protein complement(1810662..1811099) Desulfovibrio vulgaris str. Hildenborough 2795846 YP_010962.1 CDS DVU1744 NC_002937.3 1811183 1811425 R identified by match to protein family HMM PF01381; DNA-binding protein complement(1811183..1811425) Desulfovibrio vulgaris str. Hildenborough 2795847 YP_010963.1 CDS DVU1745 NC_002937.3 1811492 1812031 D identified by match to protein family HMM PF01381; DNA-binding protein 1811492..1812031 Desulfovibrio vulgaris str. Hildenborough 2795848 YP_010964.1 CDS DVU1746 NC_002937.3 1812266 1813375 D identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; C-5 cytosine-specific DNA methylase 1812266..1813375 Desulfovibrio vulgaris str. Hildenborough 2795849 YP_010965.1 CDS DVU1747 NC_002937.3 1813416 1816361 D identified by match to protein family HMM PF02518; match to protein family HMM TIGR01369; hypothetical protein 1813416..1816361 Desulfovibrio vulgaris str. Hildenborough 2795850 YP_010966.1 CDS DVU1748 NC_002937.3 1816342 1818114 D hypothetical protein 1816342..1818114 Desulfovibrio vulgaris str. Hildenborough 2795851 YP_010967.1 CDS DVU1749 NC_002937.3 1818096 1818317 R hypothetical protein complement(1818096..1818317) Desulfovibrio vulgaris str. Hildenborough 2795852 YP_010968.1 CDS DVU1750 NC_002937.3 1818336 1819118 D hypothetical protein 1818336..1819118 Desulfovibrio vulgaris str. Hildenborough 2795853 YP_010969.1 CDS DVU1751 NC_002937.3 1819311 1819457 D hypothetical protein 1819311..1819457 Desulfovibrio vulgaris str. Hildenborough 2795788 YP_010970.1 CDS DVU1752 NC_002937.3 1819838 1820077 D hypothetical protein 1819838..1820077 Desulfovibrio vulgaris str. Hildenborough 2795789 YP_010971.1 CDS DVU1753 NC_002937.3 1820161 1820334 D hypothetical protein 1820161..1820334 Desulfovibrio vulgaris str. Hildenborough 2795790 YP_010972.1 CDS DVU1754 NC_002937.3 1820331 1820738 D hypothetical protein 1820331..1820738 Desulfovibrio vulgaris str. Hildenborough 2795791 YP_010973.1 CDS DVU1755 NC_002937.3 1820735 1820977 D hypothetical protein 1820735..1820977 Desulfovibrio vulgaris str. Hildenborough 2795792 YP_010974.1 CDS DVU1756 NC_002937.3 1821372 1821635 D hypothetical protein 1821372..1821635 Desulfovibrio vulgaris str. Hildenborough 2795793 YP_010975.1 CDS DVU1757 NC_002937.3 1821607 1822728 R identified by match to protein family HMM PF00589; phage integrase site specific recombinase complement(1821607..1822728) Desulfovibrio vulgaris str. Hildenborough 2795794 YP_010976.1 CDS DVU1758 NC_002937.3 1823074 1823781 D lipoprotein 1823074..1823781 Desulfovibrio vulgaris str. Hildenborough 2795795 YP_010977.1 CDS DVU1759 NC_002937.3 1823946 1824314 R identified by match to protein family HMM PF02573; molybdenum-binding protein complement(1823946..1824314) Desulfovibrio vulgaris str. Hildenborough 2795796 YP_010978.1 CDS DVU1760 NC_002937.3 1824953 1825537 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1824953..1825537) Desulfovibrio vulgaris str. Hildenborough 2795797 YP_010979.1 CDS DVU1761 NC_002937.3 1825555 1825746 D hypothetical protein 1825555..1825746 Desulfovibrio vulgaris str. Hildenborough 2795798 YP_010980.1 CDS DVU1762 NC_002937.3 1825786 1826244 D identified by similarity to OMNI:VCA1051; match to protein family HMM PF03733; hypothetical protein 1825786..1826244 Desulfovibrio vulgaris str. Hildenborough 2795809 YP_010981.1 CDS DVU1763 NC_002937.3 1826856 1827011 R hypothetical protein complement(1826856..1827011) Desulfovibrio vulgaris str. Hildenborough 2795810 YP_010982.1 CDS DVU1764 NC_002937.3 1827038 1827307 D identified by similarity to OMNI:NTL01TT1482; hypothetical protein 1827038..1827307 Desulfovibrio vulgaris str. Hildenborough 2795811 YP_010983.1 CDS thiH NC_002937.3 1827335 1828729 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 1827335..1828729 Desulfovibrio vulgaris str. Hildenborough 2795812 YP_010984.1 CDS DVU1766 NC_002937.3 1828716 1830128 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 1828716..1830128 Desulfovibrio vulgaris str. Hildenborough 2795813 YP_010985.1 CDS DVU1767 NC_002937.3 1830125 1831093 D catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1830125..1831093 Desulfovibrio vulgaris str. Hildenborough 2795814 YP_010986.1 CDS DVU1768 NC_002937.3 1831098 1832330 D identified by match to protein family HMM TIGR00231; GTP-binding protein 1831098..1832330 Desulfovibrio vulgaris str. Hildenborough 2795815 YP_010987.1 CDS hydA NC_002937.3 1832483 1833748 D identified by similarity to SP:P07598; match to protein family HMM PF00037; match to protein family HMM PF02906; periplasmic [Fe] hydrogenase large subunit 1832483..1833748 Desulfovibrio vulgaris str. Hildenborough 2795816 YP_010988.1 CDS hydB NC_002937.3 1833760 1834131 D identified by similarity to SP:P07603; match to protein family HMM PF02256; match to protein family HMM TIGR01409; periplasmic [Fe] hydrogenase small subunit 1833760..1834131 Desulfovibrio vulgaris str. Hildenborough 2795817 YP_010989.1 CDS hydC NC_002937.3 1834384 1836204 R identified by similarity to GP:40828; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; [Fe] hydrogenase gamma complement(1834384..1836204) Desulfovibrio vulgaris str. Hildenborough 2795818 YP_010990.1 CDS DVU1772 NC_002937.3 1836228 1838249 R identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase complement(1836228..1838249) Desulfovibrio vulgaris str. Hildenborough 2795819 YP_010991.1 CDS DVU1773 NC_002937.3 1838243 1838536 D hypothetical protein 1838243..1838536 Desulfovibrio vulgaris str. Hildenborough 2795820 YP_010992.1 CDS DVU1774 NC_002937.3 1838748 1839629 D hypothetical protein 1838748..1839629 Desulfovibrio vulgaris str. Hildenborough 2794281 YP_010993.1 CDS ribB NC_002937.3 1839892 1840536 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(1839892..1840536) Desulfovibrio vulgaris str. Hildenborough 2794282 YP_010994.1 CDS DVU1776 NC_002937.3 1840788 1840901 R hypothetical protein complement(1840788..1840901) Desulfovibrio vulgaris str. Hildenborough 2794283 YP_010995.1 CDS cynT NC_002937.3 1841010 1841747 R identified by similarity to SP:P17582; match to protein family HMM PF00484; carbonic anhydrase complement(1841010..1841747) Desulfovibrio vulgaris str. Hildenborough 2794284 YP_010996.1 CDS DVU1778 NC_002937.3 1841677 1843122 R identified by similarity to OMNI:CT0538; match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(1841677..1843122) Desulfovibrio vulgaris str. Hildenborough 2794285 YP_010997.1 CDS DVU1779 NC_002937.3 1843176 1843382 R hypothetical protein complement(1843176..1843382) Desulfovibrio vulgaris str. Hildenborough 2794286 YP_010998.1 CDS DVU1780 NC_002937.3 1843438 1843743 R identified by similarity to OMNI:NTL01XC1623; hypothetical protein complement(1843438..1843743) Desulfovibrio vulgaris str. Hildenborough 2794287 YP_010999.1 CDS DVU1781 NC_002937.3 1843928 1844593 R identified by similarity to OMNI:NTL01NM01533; match to protein family HMM PF02589; hypothetical protein complement(1843928..1844593) Desulfovibrio vulgaris str. Hildenborough 2794288 YP_011000.1 CDS DVU1782 NC_002937.3 1844586 1846013 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273; iron-sulfur cluster-binding protein complement(1844586..1846013) Desulfovibrio vulgaris str. Hildenborough 2794289 YP_011001.1 CDS DVU1783 NC_002937.3 1846006 1846758 R identified by match to protein family HMM PF02754; hypothetical protein complement(1846006..1846758) Desulfovibrio vulgaris str. Hildenborough 2794290 YP_011002.1 CDS DVU1784 NC_002937.3 1846930 1847691 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 1846930..1847691 Desulfovibrio vulgaris str. Hildenborough 2794291 YP_011003.1 CDS DVU1785 NC_002937.3 1847895 1848497 D identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; MarC membrane protein 1847895..1848497 Desulfovibrio vulgaris str. Hildenborough 2794292 YP_011004.1 CDS DVU1786 NC_002937.3 1849057 1850115 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(1849057..1850115) Desulfovibrio vulgaris str. Hildenborough 2793312 YP_011005.1 CDS DVU1787 NC_002937.3 1850148 1850774 R identified by match to protein family HMM PF00565; nuclease domain-containing protein complement(1850148..1850774) Desulfovibrio vulgaris str. Hildenborough 2793313 YP_011006.1 CDS rpoD NC_002937.3 1851002 1852774 R identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma-70 factor complement(1851002..1852774) Desulfovibrio vulgaris str. Hildenborough 2793314 YP_011007.1 CDS dnaG NC_002937.3 1852767 1854485 R identified by similarity to SP:O33470; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase complement(1852767..1854485) Desulfovibrio vulgaris str. Hildenborough 2793315 YP_011008.1 CDS DVU1790 NC_002937.3 1854518 1856833 R identified by match to protein family HMM PF00488; match to protein family HMM PF01713; MutS2 family protein complement(1854518..1856833) Desulfovibrio vulgaris str. Hildenborough 2793316 YP_011009.1 CDS DVU1791 NC_002937.3 1856840 1857289 R identified by match to protein family HMM PF02637; GatB/Yqey family protein complement(1856840..1857289) Desulfovibrio vulgaris str. Hildenborough 2793317 YP_011010.2 CDS rpsU NC_002937.3 1857405 1857608 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1857405..1857608) Desulfovibrio vulgaris str. Hildenborough 2793318 YP_011011.1 CDS DVU1793 NC_002937.3 1857614 1857712 R hypothetical protein complement(1857614..1857712) Desulfovibrio vulgaris str. Hildenborough 2793319 YP_011012.1 CDS DVU1794 NC_002937.3 1857725 1857928 R hypothetical protein complement(1857725..1857928) Desulfovibrio vulgaris str. Hildenborough 2793320 YP_011013.1 CDS hup-3 NC_002937.3 1857939 1858211 R identified by similarity to SP:P02341; similarity to SP:P28080; match to protein family HMM PF00216; DNA-binding protein HU complement(1857939..1858211) Desulfovibrio vulgaris str. Hildenborough 2793321 YP_011014.1 CDS DVU1796 NC_002937.3 1858208 1858330 R hypothetical protein complement(1858208..1858330) Desulfovibrio vulgaris str. Hildenborough 2796705 YP_011015.2 CDS ksgA NC_002937.3 1858413 1859288 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1858413..1859288) Desulfovibrio vulgaris str. Hildenborough 2796706 YP_011016.1 CDS DVU1798 NC_002937.3 1859305 1859820 R identified by similarity to OMNI:NTL01TE0138; hypothetical protein complement(1859305..1859820) Desulfovibrio vulgaris str. Hildenborough 2796707 YP_011017.1 CDS fusA-2 NC_002937.3 1859827 1861875 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1859827..1861875) Desulfovibrio vulgaris str. Hildenborough 2796708 YP_003858615.1 CDS DVU4005 NC_002937.3 1861868 1862815 R hypothetical protein complement(1861868..1862815) Desulfovibrio vulgaris str. Hildenborough 9714859 YP_011019.1 CDS DVU1801 NC_002937.3 1863082 1864269 R hypothetical protein complement(1863082..1864269) Desulfovibrio vulgaris str. Hildenborough 2796710 YP_011020.1 CDS DVU1802 NC_002937.3 1864479 1865339 D identified by similarity to OMNI:NTL01RS2082; hypothetical protein 1864479..1865339 Desulfovibrio vulgaris str. Hildenborough 2796711 YP_011021.1 CDS DVU1803 NC_002937.3 1865370 1866458 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(1865370..1866458) Desulfovibrio vulgaris str. Hildenborough 2796712 YP_011022.1 CDS DVU1804 NC_002937.3 1866458 1868287 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(1866458..1868287) Desulfovibrio vulgaris str. Hildenborough 2796713 YP_011023.1 CDS DVU1805 NC_002937.3 1868457 1869920 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1868457..1869920 Desulfovibrio vulgaris str. Hildenborough 2796714 YP_011024.1 CDS mgtE NC_002937.3 1870156 1871526 R identified by similarity to OMNI:NTL03CP1240; match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter complement(1870156..1871526) Desulfovibrio vulgaris str. Hildenborough 2796715 YP_011025.1 CDS nadC NC_002937.3 1871670 1872557 D identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 1871670..1872557 Desulfovibrio vulgaris str. Hildenborough 2796716 YP_011026.1 CDS nadA NC_002937.3 1872554 1873630 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1872554..1873630 Desulfovibrio vulgaris str. Hildenborough 2796637 YP_011027.1 CDS nadB NC_002937.3 1873643 1875229 D identified by similarity to SP:P10902; match to protein family HMM PF00890; match to protein family HMM TIGR00551; L-aspartate oxidase 1873643..1875229 Desulfovibrio vulgaris str. Hildenborough 2796638 YP_011028.1 CDS DVU1810 NC_002937.3 1875340 1875762 R hypothetical protein complement(1875340..1875762) Desulfovibrio vulgaris str. Hildenborough 2796639 YP_011029.1 CDS DVU1811 NC_002937.3 1875780 1876643 R identified by similarity to SP:P24009; match to protein family HMM PF01040; protoheme IX farnesyltransferase complement(1875780..1876643) Desulfovibrio vulgaris str. Hildenborough 2796640 YP_011030.1 CDS DVU1812 NC_002937.3 1876687 1877967 R identified by match to protein family HMM PF00116; cytochrome c oxidase subunit II complement(1876687..1877967) Desulfovibrio vulgaris str. Hildenborough 2796641 YP_011031.1 CDS DVU1813 NC_002937.3 1877977 1878270 R hypothetical protein complement(1877977..1878270) Desulfovibrio vulgaris str. Hildenborough 2796642 YP_011032.1 CDS DVU1814 NC_002937.3 1878279 1878890 R identified by similarity to SP:P50677; match to protein family HMM PF00510; cytochrome c oxidase subunit III complement(1878279..1878890) Desulfovibrio vulgaris str. Hildenborough 2796643 YP_011033.1 CDS DVU1815 NC_002937.3 1878901 1880526 R identified by match to protein family HMM PF00115; cytochrome c oxidase subunit I complement(1878901..1880526) Desulfovibrio vulgaris str. Hildenborough 2796644 YP_011034.2 CDS DVU1816 NC_002937.3 1880550 1881671 R identified by similarity to GP:10185094; hypothetical protein complement(1880550..1881671) Desulfovibrio vulgaris str. Hildenborough 2796645 YP_011035.1 CDS cyf NC_002937.3 1881747 1882058 R identified by similarity to SP:P04032; match to protein family HMM PF00034; cytochrome c-553 complement(1881747..1882058) Desulfovibrio vulgaris str. Hildenborough 2796646 YP_011036.1 CDS secF NC_002937.3 1882210 1883298 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(1882210..1883298) Desulfovibrio vulgaris str. Hildenborough 2796647 YP_011037.1 CDS secD NC_002937.3 1883311 1884909 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(1883311..1884909) Desulfovibrio vulgaris str. Hildenborough 2793480 YP_011038.1 CDS yajC NC_002937.3 1885040 1885405 R identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC complement(1885040..1885405) Desulfovibrio vulgaris str. Hildenborough 2793481 YP_011039.1 CDS DVU1821 NC_002937.3 1885906 1886661 R identified by similarity to OMNI:TM0394; match to protein family HMM PF01493; hypothetical protein complement(1885906..1886661) Desulfovibrio vulgaris str. Hildenborough 2793482 YP_011040.1 CDS DVU1822 NC_002937.3 1886664 1887758 R identified by similarity to OMNI:NTL01TT0760; match to protein family HMM PF00310; glutamate synthase complement(1886664..1887758) Desulfovibrio vulgaris str. Hildenborough 2793483 YP_011041.1 CDS DVU1823 NC_002937.3 1887773 1889296 R identified by match to protein family HMM PF00037; match to protein family HMM PF01645; glutamate synthase complement(1887773..1889296) Desulfovibrio vulgaris str. Hildenborough 2793484 YP_011042.1 CDS DVU1824 NC_002937.3 1889515 1890279 R hypothetical protein complement(1889515..1890279) Desulfovibrio vulgaris str. Hildenborough 2793485 YP_011043.1 CDS DVU1825 NC_002937.3 1890462 1891790 D identified by match to protein family HMM PF01979; amidohydrolase 1890462..1891790 Desulfovibrio vulgaris str. Hildenborough 2793486 YP_011044.1 CDS DVU1826 NC_002937.3 1891930 1892202 D hypothetical protein 1891930..1892202 Desulfovibrio vulgaris str. Hildenborough 2793487 YP_011045.1 CDS DVU1827 NC_002937.3 1892330 1893553 D catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate; diaminopimelate aminotransferase 1892330..1893553 Desulfovibrio vulgaris str. Hildenborough 2793488 YP_011046.1 CDS gidA NC_002937.3 1893556 1895445 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1893556..1895445 Desulfovibrio vulgaris str. Hildenborough 2793489 YP_011047.1 CDS DVU1829 NC_002937.3 1895451 1895606 R hypothetical protein complement(1895451..1895606) Desulfovibrio vulgaris str. Hildenborough 2793490 YP_011048.1 CDS DVU1830 NC_002937.3 1895706 1896770 D hypothetical protein 1895706..1896770 Desulfovibrio vulgaris str. Hildenborough 2793491 YP_011049.1 CDS DVU1832 NC_002937.3 1898045 1898146 D hypothetical protein 1898045..1898146 Desulfovibrio vulgaris str. Hildenborough 2796466 YP_011050.1 CDS DVU1833 NC_002937.3 1898486 1902061 R identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; phosphoenolpyruvate synthase complement(1898486..1902061) Desulfovibrio vulgaris str. Hildenborough 2796467 YP_011051.2 CDS DVU1834 NC_002937.3 1902205 1905909 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(1902205..1905909) Desulfovibrio vulgaris str. Hildenborough 2796468 YP_011052.2 CDS DVU1835 NC_002937.3 1905994 1906926 R identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin--acetyl-CoA-carboxylase ligase complement(1905994..1906926) Desulfovibrio vulgaris str. Hildenborough 2796469 YP_011053.1 CDS DVU1836 NC_002937.3 1906976 1908127 D identified by match to protein family HMM PF01743; tRNA nucleotidyltransferase 1906976..1908127 Desulfovibrio vulgaris str. Hildenborough 2796470 YP_011054.1 CDS DVU1837 NC_002937.3 1908228 1909010 R identified by similarity to SP:Q50985; match to protein family HMM PF03696; competence protein complement(1908228..1909010) Desulfovibrio vulgaris str. Hildenborough 2796471 YP_011055.1 CDS trxB-2 NC_002937.3 1908952 1909875 R identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase complement(1908952..1909875) Desulfovibrio vulgaris str. Hildenborough 2796472 YP_011056.1 CDS trx NC_002937.3 1909875 1910198 R identified by similarity to SP:P06544; match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(1909875..1910198) Desulfovibrio vulgaris str. Hildenborough 2796473 YP_011057.1 CDS DVU1840 NC_002937.3 1910311 1911396 R identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329; glycoprotease metalloendopeptidase complement(1910311..1911396) Desulfovibrio vulgaris str. Hildenborough 2796474 YP_011058.1 CDS fbp NC_002937.3 1911438 1912451 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(1911438..1912451) Desulfovibrio vulgaris str. Hildenborough 2796475 YP_011059.1 CDS DVU1842 NC_002937.3 1912544 1913500 R lipoprotein complement(1912544..1913500) Desulfovibrio vulgaris str. Hildenborough 2796476 YP_011060.1 CDS DVU1843 NC_002937.3 1913546 1914499 R hypothetical protein complement(1913546..1914499) Desulfovibrio vulgaris str. Hildenborough 2795906 YP_011061.1 CDS DVU1844 NC_002937.3 1914483 1914812 R identified by match to protein family HMM PF04977; septum formation initiator family protein complement(1914483..1914812) Desulfovibrio vulgaris str. Hildenborough 2795907 YP_011062.1 CDS DVU1845 NC_002937.3 1914809 1915081 R hypothetical protein complement(1914809..1915081) Desulfovibrio vulgaris str. Hildenborough 2795908 YP_011063.1 CDS pgsA NC_002937.3 1915111 1915668 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1915111..1915668) Desulfovibrio vulgaris str. Hildenborough 2795909 YP_011064.1 CDS DVU1847 NC_002937.3 1915787 1916680 R identified by similarity to SP:Q57731; hypothetical protein complement(1915787..1916680) Desulfovibrio vulgaris str. Hildenborough 2795910 YP_011065.1 CDS DVU1848 NC_002937.3 1916843 1917436 R identified by similarity to OMNI:NTL03PA05518; match to protein family HMM PF00597; hypothetical protein complement(1916843..1917436) Desulfovibrio vulgaris str. Hildenborough 2795911 YP_011066.1 CDS pcm NC_002937.3 1917440 1918072 R identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate O-methyltransferase complement(1917440..1918072) Desulfovibrio vulgaris str. Hildenborough 2795912 YP_011067.1 CDS DVU1850 NC_002937.3 1918297 1918725 D identified by match to protein family HMM PF00571; hypothetical protein 1918297..1918725 Desulfovibrio vulgaris str. Hildenborough 2795913 YP_011068.1 CDS DVU1851 NC_002937.3 1918806 1920128 D identified by match to protein family HMM PF01551; M24/M37 family peptidase 1918806..1920128 Desulfovibrio vulgaris str. Hildenborough 2795914 YP_011069.1 CDS DVU1852 NC_002937.3 1920283 1920894 D identified by similarity to SP:Q10785; hypothetical protein 1920283..1920894 Desulfovibrio vulgaris str. Hildenborough 2795915 YP_011070.1 CDS DVU1853 NC_002937.3 1921076 1921372 R hypothetical protein complement(1921076..1921372) Desulfovibrio vulgaris str. Hildenborough 2795916 YP_011071.1 CDS DVU1854 NC_002937.3 1921449 1922141 D hypothetical protein 1921449..1922141 Desulfovibrio vulgaris str. Hildenborough 2795917 YP_011072.1 CDS DVU1855 NC_002937.3 1922796 1923116 D integrase, truncation 1922796..1923116 Desulfovibrio vulgaris str. Hildenborough 2793637 YP_011073.1 CDS DVU1856 NC_002937.3 1923251 1923439 R hypothetical protein complement(1923251..1923439) Desulfovibrio vulgaris str. Hildenborough 2793638 YP_011074.1 CDS DVU1857 NC_002937.3 1923475 1925562 R identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(1923475..1925562) Desulfovibrio vulgaris str. Hildenborough 2793639 YP_011075.1 CDS DVU1858 NC_002937.3 1925817 1926353 R identified by match to protein family HMM PF00313; cold shock domain-containing protein complement(1925817..1926353) Desulfovibrio vulgaris str. Hildenborough 2793640 YP_011076.1 CDS DVU1859 NC_002937.3 1926709 1926834 D hypothetical protein 1926709..1926834 Desulfovibrio vulgaris str. Hildenborough 2793641 YP_011077.1 CDS lnt NC_002937.3 1926819 1928327 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 1926819..1928327 Desulfovibrio vulgaris str. Hildenborough 2793642 YP_011078.1 CDS prfB NC_002937.3 1928351 1929467 D identified by similarity to SP:P28367; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2, programmed frameshift join(1928351..1928425,1928427..1929467) Desulfovibrio vulgaris str. Hildenborough 2793643 YP_011079.1 CDS DVU1862 NC_002937.3 1929448 1930443 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1929448..1930443 Desulfovibrio vulgaris str. Hildenborough 2793644 YP_011080.1 CDS DVU1863 NC_002937.3 1930440 1931258 D identified by similarity to OMNI:NTL03PA01455; flagellar synthesis regulator FleN 1930440..1931258 Desulfovibrio vulgaris str. Hildenborough 2793645 YP_011081.1 CDS DVU1864 NC_002937.3 1931333 1931614 D identified by similarity to SP:P08821; match to protein family HMM PF00216; DNA-binding protein HU subunit beta 1931333..1931614 Desulfovibrio vulgaris str. Hildenborough 2793646 YP_011082.1 CDS DVU1865 NC_002937.3 1931601 1931741 D hypothetical protein 1931601..1931741 Desulfovibrio vulgaris str. Hildenborough 2794309 YP_011083.1 CDS DVU1866 NC_002937.3 1931793 1932494 D hypothetical protein 1931793..1932494 Desulfovibrio vulgaris str. Hildenborough 2794310 YP_011084.1 CDS dapF NC_002937.3 1932520 1933368 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1932520..1933368 Desulfovibrio vulgaris str. Hildenborough 2794311 YP_011085.1 CDS dapA NC_002937.3 1933424 1934302 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1933424..1934302 Desulfovibrio vulgaris str. Hildenborough 2794312 YP_011086.1 CDS DVU1869 NC_002937.3 1934675 1936990 D identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1934675..1936990 Desulfovibrio vulgaris str. Hildenborough 2794313 YP_011087.1 CDS DVU1870 NC_002937.3 1937100 1937897 R identified by match to protein family HMM PF04199; cyclase complement(1937100..1937897) Desulfovibrio vulgaris str. Hildenborough 2794314 YP_011088.1 CDS aspA NC_002937.3 1938152 1939558 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(1938152..1939558) Desulfovibrio vulgaris str. Hildenborough 2794315 YP_011089.1 CDS DVU1872 NC_002937.3 1939633 1940058 R hypothetical protein complement(1939633..1940058) Desulfovibrio vulgaris str. Hildenborough 2794316 YP_011090.2 CDS ppiB-2 NC_002937.3 1940074 1940646 R identified by similarity to SP:P23869; match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B complement(1940074..1940646) Desulfovibrio vulgaris str. Hildenborough 2794317 YP_011091.1 CDS clpB NC_002937.3 1940871 1943468 R identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpB complement(1940871..1943468) Desulfovibrio vulgaris str. Hildenborough 2794318 YP_011092.1 CDS DVU1875 NC_002937.3 1943493 1943810 R identified by similarity to SP:P77527; dafA protein complement(1943493..1943810) Desulfovibrio vulgaris str. Hildenborough 2794319 YP_011093.1 CDS DVU1876 NC_002937.3 1943843 1944793 R identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF01556; dnaJ protein complement(1943843..1944793) Desulfovibrio vulgaris str. Hildenborough 2794320 YP_011094.1 CDS DVU1877 NC_002937.3 1944936 1946036 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 1944936..1946036 Desulfovibrio vulgaris str. Hildenborough 2793546 YP_011095.1 CDS ltaE NC_002937.3 1946235 1947257 R identified by similarity to SP:O50584; threonine aldolase complement(1946235..1947257) Desulfovibrio vulgaris str. Hildenborough 2793547 YP_011096.1 CDS DVU1879 NC_002937.3 1947269 1948369 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(1947269..1948369) Desulfovibrio vulgaris str. Hildenborough 2793548 YP_011097.1 CDS DVU1880 NC_002937.3 1948764 1949405 R hypothetical protein complement(1948764..1949405) Desulfovibrio vulgaris str. Hildenborough 2793549 YP_011098.1 CDS DVU1881 NC_002937.3 1949567 1950583 D identified by similarity to SP:P46343; match to protein family HMM PF02562; phoH family protein 1949567..1950583 Desulfovibrio vulgaris str. Hildenborough 2793550 YP_011099.1 CDS DVU1882 NC_002937.3 1950678 1953038 D identified by similarity to OMNI:NTL01TT0909; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 1950678..1953038 Desulfovibrio vulgaris str. Hildenborough 2793551 YP_011100.1 CDS DVU1883 NC_002937.3 1953035 1953523 D identified by similarity to SP:P71335; match to protein family HMM PF02130; hypothetical protein 1953035..1953523 Desulfovibrio vulgaris str. Hildenborough 2793552 YP_011101.1 CDS DVU1884 NC_002937.3 1953750 1956152 R identified by similarity to OMNI:VCA1056; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein complement(1953750..1956152) Desulfovibrio vulgaris str. Hildenborough 2793553 YP_011102.1 CDS gatB NC_002937.3 1956477 1957907 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1956477..1957907) Desulfovibrio vulgaris str. Hildenborough 2793554 YP_011103.1 CDS DVU1886 NC_002937.3 1957910 1958587 R hypothetical protein complement(1957910..1958587) Desulfovibrio vulgaris str. Hildenborough 2793555 YP_011104.1 CDS DVU1887 NC_002937.3 1958609 1960351 R hypothetical protein complement(1958609..1960351) Desulfovibrio vulgaris str. Hildenborough 2793556 YP_011105.1 CDS DVU1888 NC_002937.3 1960433 1961332 R identified by match to protein family HMM PF01513; ATP-NAD kinase domain-containing protein complement(1960433..1961332) Desulfovibrio vulgaris str. Hildenborough 2793557 YP_011106.1 CDS gmhA NC_002937.3 1961468 1962094 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1961468..1962094 Desulfovibrio vulgaris str. Hildenborough 2793558 YP_011107.1 CDS hemC NC_002937.3 1962409 1963356 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1962409..1963356 Desulfovibrio vulgaris str. Hildenborough 2794701 YP_011108.1 CDS DVU1891 NC_002937.3 1963699 1964460 R identified by similarity to OMNI:NTL01NS1759; match to protein family HMM PF05143; hypothetical protein complement(1963699..1964460) Desulfovibrio vulgaris str. Hildenborough 2794702 YP_011109.1 CDS DVU1892 NC_002937.3 1964430 1965179 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(1964430..1965179) Desulfovibrio vulgaris str. Hildenborough 2794703 YP_011110.1 CDS DVU1893 NC_002937.3 1965307 1967727 D identified by match to protein family HMM PF05362; ATP-dependent protease 1965307..1967727 Desulfovibrio vulgaris str. Hildenborough 2794704 YP_011111.1 CDS DVU1894 NC_002937.3 1967938 1968156 R hypothetical protein complement(1967938..1968156) Desulfovibrio vulgaris str. Hildenborough 2794705 YP_011112.1 CDS DVU1895 NC_002937.3 1968364 1969530 D identified by similarity to OMNI:NTL02MA0180; match to protein family HMM PF00083; major facilitator superfamily protein 1968364..1969530 Desulfovibrio vulgaris str. Hildenborough 2794706 YP_011113.1 CDS rpsT NC_002937.3 1970096 1970359 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1970096..1970359) Desulfovibrio vulgaris str. Hildenborough 2794707 YP_011114.1 CDS glyS NC_002937.3 1970475 1972565 R identified by match to protein family HMM PF02092; match to protein family HMM TIGR00211; glycyl-tRNA synthetase subunit beta complement(1970475..1972565) Desulfovibrio vulgaris str. Hildenborough 2794708 YP_011115.1 CDS glyQ NC_002937.3 1972583 1973452 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1972583..1973452) Desulfovibrio vulgaris str. Hildenborough 2794709 YP_011116.1 CDS DVU1899 NC_002937.3 1973502 1974257 R identified by match to protein family HMM PF02565; DNA repair protein RecO complement(1973502..1974257) Desulfovibrio vulgaris str. Hildenborough 2794710 YP_011117.1 CDS DVU1900 NC_002937.3 1974260 1975201 R identified by similarity to OMNI:NTL03PA03804; hypothetical protein complement(1974260..1975201) Desulfovibrio vulgaris str. Hildenborough 2794711 YP_011118.1 CDS DVU1901 NC_002937.3 1975298 1976344 R identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase domain-containing protein complement(1975298..1976344) Desulfovibrio vulgaris str. Hildenborough 2794712 YP_011119.1 CDS DVU1902 NC_002937.3 1976382 1977320 R identified by similarity to OMNI:NTL01YP0471; hypothetical protein complement(1976382..1977320) Desulfovibrio vulgaris str. Hildenborough 2793675 YP_011120.1 CDS mfd NC_002937.3 1977379 1980861 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(1977379..1980861) Desulfovibrio vulgaris str. Hildenborough 2793676 YP_011121.1 CDS cheW-2 NC_002937.3 1980940 1981416 R identified by similarity to SP:P07365; match to protein family HMM PF01584; chemotaxis protein CheW complement(1980940..1981416) Desulfovibrio vulgaris str. Hildenborough 2793677 YP_011122.1 CDS DVU1905 NC_002937.3 1981437 1981865 D hypothetical protein 1981437..1981865 Desulfovibrio vulgaris str. Hildenborough 2793678 YP_011123.1 CDS DVU1906 NC_002937.3 1981946 1982062 D hypothetical protein 1981946..1982062 Desulfovibrio vulgaris str. Hildenborough 2793679 YP_011124.1 CDS ugd NC_002937.3 1982240 1983577 R identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose 6-dehydrogenase complement(1982240..1983577) Desulfovibrio vulgaris str. Hildenborough 2793680 YP_011125.1 CDS pdxJ NC_002937.3 1983729 1984454 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1983729..1984454 Desulfovibrio vulgaris str. Hildenborough 2793681 YP_011126.1 CDS acpS NC_002937.3 1984465 1984839 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1984465..1984839 Desulfovibrio vulgaris str. Hildenborough 2793682 YP_011127.1 CDS DVU1910 NC_002937.3 1984961 1986685 D identified by similarity to GP:9105649; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; YjeF-like protein 1984961..1986685 Desulfovibrio vulgaris str. Hildenborough 2793683 YP_011128.1 CDS DVU1911 NC_002937.3 1986678 1987130 D identified by similarity to OMNI:NTL01TE1801; match to protein family HMM PF00571; hypothetical protein 1986678..1987130 Desulfovibrio vulgaris str. Hildenborough 2793684 YP_011129.1 CDS DVU1912 NC_002937.3 1987143 1987631 D identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1987143..1987631 Desulfovibrio vulgaris str. Hildenborough 2793685 YP_011130.1 CDS DVU1913 NC_002937.3 1987690 1988916 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1987690..1988916 Desulfovibrio vulgaris str. Hildenborough 2793686 YP_011131.1 CDS DVU1914 NC_002937.3 1988931 1990547 D catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA; alpha-isopropylmalate/homocitrate synthase transferase 1988931..1990547 Desulfovibrio vulgaris str. Hildenborough 2793687 YP_011132.1 CDS DVU1915 NC_002937.3 1990589 1990864 R hypothetical protein complement(1990589..1990864) Desulfovibrio vulgaris str. Hildenborough 2793331 YP_011133.1 CDS DVU1916 NC_002937.3 1990842 1990973 R hypothetical protein complement(1990842..1990973) Desulfovibrio vulgaris str. Hildenborough 2793332 YP_011134.1 CDS hysB NC_002937.3 1991067 1992020 D identified by similarity to SP:P13063; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; periplasmic [NiFeSe] hydrogenase small subunit 1991067..1992020 Desulfovibrio vulgaris str. Hildenborough 2793333 YP_011135.1 CDS hysA NC_002937.3 1992054 1993586 D selenoprotein; identified by match to protein family HMM PF00374; periplasmic [NiFeSe] hydrogenase large subunit, selenocysteine-containing 1992054..1993586 Desulfovibrio vulgaris str. Hildenborough 2793334 YP_011136.1 CDS DVU1919 NC_002937.3 1993855 1994325 D identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; hydrogenase expression/formation protein 1993855..1994325 Desulfovibrio vulgaris str. Hildenborough 2793335 YP_011137.1 CDS DVU1920 NC_002937.3 1994456 1994581 R hypothetical protein complement(1994456..1994581) Desulfovibrio vulgaris str. Hildenborough 2793336 YP_011138.1 CDS hynB-1 NC_002937.3 1994643 1995596 D identified by similarity to SP:P21853; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; periplasmic [NiFe] hydrogenase small subunit, isozyme 1 1994643..1995596 Desulfovibrio vulgaris str. Hildenborough 2793337 YP_011139.1 CDS hynA-1 NC_002937.3 1995648 1997348 D identified by similarity to SP:P21852; match to protein family HMM PF00374; periplasmic [NiFe] hydrogenase large subunit, isozyme 1 1995648..1997348 Desulfovibrio vulgaris str. Hildenborough 2793338 YP_011140.1 CDS hupD NC_002937.3 1997717 1998214 D identified by similarity to SP:P31909; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; hydrogenase expression/formation protein HupD 1997717..1998214 Desulfovibrio vulgaris str. Hildenborough 2793339 YP_011141.1 CDS hypC NC_002937.3 1998226 1998477 D identified by similarity to GP:15430693; match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 1998226..1998477 Desulfovibrio vulgaris str. Hildenborough 2793340 YP_011142.1 CDS DVU1925 NC_002937.3 1998495 1999136 D identified by similarity to SP:Q07792; match to protein family HMM PF00657; GDSL family lipase 1998495..1999136 Desulfovibrio vulgaris str. Hildenborough 2793341 YP_011143.1 CDS DVU1926 NC_002937.3 1999118 1999606 D identified by similarity to GP:3482869; hypothetical protein 1999118..1999606 Desulfovibrio vulgaris str. Hildenborough 2793342 YP_011144.1 CDS ileS NC_002937.3 1999840 2002656 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1999840..2002656 Desulfovibrio vulgaris str. Hildenborough 2795304 YP_011145.1 CDS lspA NC_002937.3 2002720 2003217 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2002720..2003217 Desulfovibrio vulgaris str. Hildenborough 2795305 YP_011146.1 CDS DVU1929 NC_002937.3 2003220 2003417 D hypothetical protein 2003220..2003417 Desulfovibrio vulgaris str. Hildenborough 2795306 YP_011147.1 CDS DVU1930 NC_002937.3 2003452 2004390 D hypothetical protein 2003452..2004390 Desulfovibrio vulgaris str. Hildenborough 2795307 YP_011148.1 CDS DVU1931 NC_002937.3 2004416 2004859 D identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 2004416..2004859 Desulfovibrio vulgaris str. Hildenborough 2795308 YP_011149.1 CDS adk NC_002937.3 2005343 2006014 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2005343..2006014 Desulfovibrio vulgaris str. Hildenborough 2795309 YP_011150.1 CDS DVU1933 NC_002937.3 2006535 2007056 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; PfpI family peptidase complement(2006535..2007056) Desulfovibrio vulgaris str. Hildenborough 2795310 YP_011151.1 CDS DVU1934 NC_002937.3 2007149 2007949 R identified by similarity to SP:P16683; match to protein family HMM PF00528; phosphonate ABC transporter permease complement(2007149..2007949) Desulfovibrio vulgaris str. Hildenborough 2795311 YP_011152.1 CDS DVU1935 NC_002937.3 2007946 2008743 R identified by similarity to SP:P16683; match to protein family HMM PF00528; phosphonate ABC transporter permease complement(2007946..2008743) Desulfovibrio vulgaris str. Hildenborough 2795312 YP_011153.1 CDS DVU1936 NC_002937.3 2008731 2009528 R identified by similarity to SP:P16677; match to protein family HMM PF00005; phosphonate ABC transporter ATP-binding protein complement(2008731..2009528) Desulfovibrio vulgaris str. Hildenborough 2795313 YP_011154.1 CDS DVU1937 NC_002937.3 2009605 2010618 R identified by similarity to SP:P16682; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(2009605..2010618) Desulfovibrio vulgaris str. Hildenborough 2795314 YP_011155.1 CDS DVU1938 NC_002937.3 2010900 2011175 R hypothetical protein complement(2010900..2011175) Desulfovibrio vulgaris str. Hildenborough 2795315 YP_011156.1 CDS DVU1939 NC_002937.3 2011221 2012504 R sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B complement(2011221..2012504) Desulfovibrio vulgaris str. Hildenborough 2795316 YP_011157.1 CDS DVU1940 NC_002937.3 2012513 2014063 R identified by similarity to SP:P13032; match to protein family HMM PF01266; anaerobic glycerol-3-phosphate dehydrogenase subunit A complement(2012513..2014063) Desulfovibrio vulgaris str. Hildenborough 2793512 YP_011158.1 CDS DVU1941 NC_002937.3 2014099 2014866 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; HAD family hydrolase complement(2014099..2014866) Desulfovibrio vulgaris str. Hildenborough 2793513 YP_011159.1 CDS DVU1942 NC_002937.3 2015131 2017044 D identified by match to protein family HMM PF02645; match to protein family HMM PF02734; match to protein family HMM TIGR00762; DAK2 and DegV domain-containing protein 2015131..2017044 Desulfovibrio vulgaris str. Hildenborough 2793514 YP_011160.1 CDS DVU1943 NC_002937.3 2017131 2017364 D hypothetical protein 2017131..2017364 Desulfovibrio vulgaris str. Hildenborough 2793515 YP_011161.1 CDS DVU1944 NC_002937.3 2017637 2017909 D identified by match to protein family HMM PF00037; pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit 2017637..2017909 Desulfovibrio vulgaris str. Hildenborough 2793516 YP_011162.1 CDS DVU1945 NC_002937.3 2017911 2019059 D Couples the complete acetyl-CoA oxidation to aromatic ring reduction by the use of the low-potential electron shuttle ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha 2017911..2019059 Desulfovibrio vulgaris str. Hildenborough 2793517 YP_011163.1 CDS DVU1946 NC_002937.3 2019067 2019897 D catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 2019067..2019897 Desulfovibrio vulgaris str. Hildenborough 2793518 YP_011164.1 CDS DVU1947 NC_002937.3 2019894 2020517 D identified by match to protein family HMM PF01558; pyruvate ferredoxin oxidoreductase subunit gamma 2019894..2020517 Desulfovibrio vulgaris str. Hildenborough 2793519 YP_011165.1 CDS DVU1948 NC_002937.3 2020528 2020818 D identified by similarity to GP:29541639; hypothetical protein 2020528..2020818 Desulfovibrio vulgaris str. Hildenborough 2793520 YP_011166.1 CDS nifA-1 NC_002937.3 2021083 2022672 R identified by similarity to SP:P27713; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; nif-specific regulatory protein complement(2021083..2022672) Desulfovibrio vulgaris str. Hildenborough 2793521 YP_011167.1 CDS DVU1950 NC_002937.3 2022676 2023272 R identified by similarity to SP:O07836; match to protein family HMM PF01558; indolepyruvate ferredoxin oxidoreductase subunit beta complement(2022676..2023272) Desulfovibrio vulgaris str. Hildenborough 2796185 YP_011168.1 CDS DVU1951 NC_002937.3 2023272 2025122 R identified by similarity to SP:O07835; indolepyruvate ferredoxin oxidoreductase subunit alpha complement(2023272..2025122) Desulfovibrio vulgaris str. Hildenborough 2796186 YP_011169.1 CDS DVU1952 NC_002937.3 2025171 2025866 R hypothetical protein complement(2025171..2025866) Desulfovibrio vulgaris str. Hildenborough 2793522 YP_011170.1 CDS proA NC_002937.3 2026227 2027486 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 2026227..2027486 Desulfovibrio vulgaris str. Hildenborough 2793523 YP_011171.1 CDS nadD NC_002937.3 2027512 2028216 D identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 2027512..2028216 Desulfovibrio vulgaris str. Hildenborough 2793467 YP_011172.1 CDS DVU1955 NC_002937.3 2028213 2029046 D identified by match to protein family HMM PF00515; hypothetical protein 2028213..2029046 Desulfovibrio vulgaris str. Hildenborough 2793468 YP_011173.1 CDS DVU1956 NC_002937.3 2029188 2030243 R identified by match to protein family HMM PF01075; heptosyltransferase complement(2029188..2030243) Desulfovibrio vulgaris str. Hildenborough 2793469 YP_011174.1 CDS DVU1957 NC_002937.3 2030240 2030386 R hypothetical protein complement(2030240..2030386) Desulfovibrio vulgaris str. Hildenborough 2793470 YP_011175.1 CDS DVU1958 NC_002937.3 2030405 2033002 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2030405..2033002 Desulfovibrio vulgaris str. Hildenborough 2793471 YP_011176.1 CDS DVU1959 NC_002937.3 2033326 2035719 D identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254; EAL/GGDEF domain-containing protein 2033326..2035719 Desulfovibrio vulgaris str. Hildenborough 2793472 YP_011177.1 CDS cheA-2 NC_002937.3 2035941 2038034 R identified by similarity to SP:P07363; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA complement(2035941..2038034) Desulfovibrio vulgaris str. Hildenborough 2793473 YP_011178.1 CDS cheW-3 NC_002937.3 2038039 2038542 R identified by similarity to SP:P07365; match to protein family HMM PF01584; chemotaxis protein CheW complement(2038039..2038542) Desulfovibrio vulgaris str. Hildenborough 2793474 YP_011179.1 CDS DVU1962 NC_002937.3 2038551 2040713 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(2038551..2040713) Desulfovibrio vulgaris str. Hildenborough 2793475 YP_011180.1 CDS DVU1963 NC_002937.3 2040758 2041039 R hypothetical protein complement(2040758..2041039) Desulfovibrio vulgaris str. Hildenborough 2793476 YP_011181.1 CDS DVU1964 NC_002937.3 2041408 2041920 R identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family transcriptional regulator complement(2041408..2041920) Desulfovibrio vulgaris str. Hildenborough 2793477 YP_011182.1 CDS DVU1965 NC_002937.3 2041974 2042201 D hypothetical protein 2041974..2042201 Desulfovibrio vulgaris str. Hildenborough 2793478 YP_011183.1 CDS DVU1966 NC_002937.3 2042247 2042405 R hypothetical protein complement(2042247..2042405) Desulfovibrio vulgaris str. Hildenborough 2793479 YP_011184.1 CDS DVU1967 NC_002937.3 2042526 2043047 D identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family transcriptional regulator 2042526..2043047 Desulfovibrio vulgaris str. Hildenborough 2795981 YP_011185.1 CDS DVU1968 NC_002937.3 2043063 2044304 D oxidoreductase 2043063..2044304 Desulfovibrio vulgaris str. Hildenborough 2795982 YP_011186.1 CDS DVU1969 NC_002937.3 2044318 2045013 D hypothetical protein 2044318..2045013 Desulfovibrio vulgaris str. Hildenborough 2795983 YP_011187.1 CDS DVU1970 NC_002937.3 2045022 2045429 D identified by match to protein family HMM PF00072; response regulator 2045022..2045429 Desulfovibrio vulgaris str. Hildenborough 2795984 YP_011188.1 CDS DVU1971 NC_002937.3 2045894 2046457 R identified by similarity to GP:5852329; hypothetical protein complement(2045894..2046457) Desulfovibrio vulgaris str. Hildenborough 2795985 YP_011189.1 CDS DVU1972 NC_002937.3 2046806 2047000 R hypothetical protein complement(2046806..2047000) Desulfovibrio vulgaris str. Hildenborough 2795986 YP_011190.1 CDS DVU1973 NC_002937.3 2046999 2047847 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 2046999..2047847 Desulfovibrio vulgaris str. Hildenborough 2795987 YP_011191.1 CDS DVU1974 NC_002937.3 2047840 2048943 D identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase 2047840..2048943 Desulfovibrio vulgaris str. Hildenborough 2795988 YP_011192.1 CDS DVU1975 NC_002937.3 2049015 2050829 R identified by similarity to SP:P35841; match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(2049015..2050829) Desulfovibrio vulgaris str. Hildenborough 2795989 YP_011193.1 CDS groEL NC_002937.3 2050958 2052601 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(2050958..2052601) Desulfovibrio vulgaris str. Hildenborough 2795990 YP_011194.1 CDS groES NC_002937.3 2052641 2052928 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2052641..2052928) Desulfovibrio vulgaris str. Hildenborough 2795991 YP_011195.1 CDS DVU1978 NC_002937.3 2053213 2054535 R identified by similarity to OMNI:VCA0193; match to protein family HMM PF03553; Na+/H+ antiporter family protein complement(2053213..2054535) Desulfovibrio vulgaris str. Hildenborough 2795992 YP_011196.1 CDS DVU1979 NC_002937.3 2055072 2056997 R identified by similarity to SP:P43672; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2055072..2056997) Desulfovibrio vulgaris str. Hildenborough 2795993 YP_011197.1 CDS DVU1980 NC_002937.3 2057153 2057545 D hypothetical protein 2057153..2057545 Desulfovibrio vulgaris str. Hildenborough 2793786 YP_011198.1 CDS DVU1981 NC_002937.3 2058023 2058514 R nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein complement(2058023..2058514) Desulfovibrio vulgaris str. Hildenborough 2793787 YP_011199.1 CDS rhlE NC_002937.3 2058879 2060267 R identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase RhlE complement(2058879..2060267) Desulfovibrio vulgaris str. Hildenborough 2793788 YP_011200.1 CDS DVU1983 NC_002937.3 2060785 2062008 D hypothetical protein 2060785..2062008 Desulfovibrio vulgaris str. Hildenborough 2793789 YP_011201.1 CDS msrA NC_002937.3 2062136 2062762 D identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase MsrA 2062136..2062762 Desulfovibrio vulgaris str. Hildenborough 2793790 YP_011202.1 CDS DVU1985 NC_002937.3 2062872 2064128 R hypothetical protein complement(2062872..2064128) Desulfovibrio vulgaris str. Hildenborough 2793791 YP_011203.1 CDS DVU1986 NC_002937.3 2064529 2064960 D identified by similarity to OMNI:MJ0989; hypothetical protein 2064529..2064960 Desulfovibrio vulgaris str. Hildenborough 2793792 YP_011204.1 CDS uvrA NC_002937.3 2065139 2068009 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A complement(2065139..2068009) Desulfovibrio vulgaris str. Hildenborough 2793793 YP_011205.1 CDS DVU1988 NC_002937.3 2068117 2068803 R identified by match to protein family HMM PF04474; hypothetical protein complement(2068117..2068803) Desulfovibrio vulgaris str. Hildenborough 2793794 YP_011206.1 CDS DVU1989 NC_002937.3 2068825 2068926 R hypothetical protein complement(2068825..2068926) Desulfovibrio vulgaris str. Hildenborough 2793795 YP_011207.1 CDS DVU1990 NC_002937.3 2068980 2069627 D hypothetical protein 2068980..2069627 Desulfovibrio vulgaris str. Hildenborough 2793796 YP_011208.1 CDS DVU1991 NC_002937.3 2070224 2071219 D hypothetical protein 2070224..2071219 Desulfovibrio vulgaris str. Hildenborough 2793798 YP_011209.1 CDS DVU1992 NC_002937.3 2071422 2072066 R identified by similarity to SP:P50868; match to protein family HMM PF00132; antibiotic acetyltransferase complement(2071422..2072066) Desulfovibrio vulgaris str. Hildenborough 2793431 YP_011210.1 CDS DVU1993 NC_002937.3 2072210 2074963 R identified by similarity to SP:Q10860; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase complement(2072210..2074963) Desulfovibrio vulgaris str. Hildenborough 2793432 YP_011211.1 CDS DVU1994 NC_002937.3 2074975 2075109 D hypothetical protein 2074975..2075109 Desulfovibrio vulgaris str. Hildenborough 2793433 YP_011212.1 CDS DVU1995 NC_002937.3 2076256 2076585 D identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor 2076256..2076585 Desulfovibrio vulgaris str. Hildenborough 2793434 YP_011213.1 CDS DVU1996 NC_002937.3 2077184 2077513 D identified by similarity to GP:12024949; match to protein family HMM PF00893; quaternary ammonium compound-resistance protein QacC 2077184..2077513 Desulfovibrio vulgaris str. Hildenborough 2793435 YP_011214.1 CDS DVU1997 NC_002937.3 2078651 2078752 R hypothetical protein complement(2078651..2078752) Desulfovibrio vulgaris str. Hildenborough 2793436 YP_011215.1 CDS DVU1998 NC_002937.3 2079351 2079515 D hypothetical protein 2079351..2079515 Desulfovibrio vulgaris str. Hildenborough 2793437 YP_011216.1 CDS DVU1999 NC_002937.3 2079560 2081704 D identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740; sulfate transporter family protein 2079560..2081704 Desulfovibrio vulgaris str. Hildenborough 2793438 YP_011217.1 CDS DVU2000 NC_002937.3 2082654 2082743 R hypothetical protein complement(2082654..2082743) Desulfovibrio vulgaris str. Hildenborough 2793439 YP_011218.1 CDS DVU2002 NC_002937.3 2084394 2084816 D hypothetical protein 2084394..2084816 Desulfovibrio vulgaris str. Hildenborough 2793441 YP_011219.1 CDS DVU2003 NC_002937.3 2084977 2086239 R identified by match to protein family HMM PF01609; IS5 family transposase complement(2084977..2086239) Desulfovibrio vulgaris str. Hildenborough 2793442 YP_011220.1 CDS DVU2004 NC_002937.3 2086357 2087406 D identified by similarity to OMNI:SO3543; match to protein family HMM PF00665; ISDvu4, transposase 2086357..2087406 Desulfovibrio vulgaris str. Hildenborough 2796726 YP_011221.1 CDS DVU2005 NC_002937.3 2087546 2087647 D hypothetical protein 2087546..2087647 Desulfovibrio vulgaris str. Hildenborough 2796727 YP_011222.1 CDS DVU2006 NC_002937.3 2087712 2087867 R hypothetical protein complement(2087712..2087867) Desulfovibrio vulgaris str. Hildenborough 2796728 YP_011223.1 CDS DVU2007 NC_002937.3 2087978 2088394 R identified by match to protein family HMM PF00565; nuclease complement(2087978..2088394) Desulfovibrio vulgaris str. Hildenborough 2796729 YP_011224.1 CDS DVU2008 NC_002937.3 2088618 2088752 R hypothetical protein complement(2088618..2088752) Desulfovibrio vulgaris str. Hildenborough 2796730 YP_011225.1 CDS DVU2009 NC_002937.3 2088755 2089138 D identified by similarity to OMNI:SO4260; hypothetical protein 2088755..2089138 Desulfovibrio vulgaris str. Hildenborough 2796731 YP_011226.1 CDS DVU2010 NC_002937.3 2089119 2089943 R identified by match to protein family HMM PF00665; ISD1, transposase OrfB complement(2089119..2089943) Desulfovibrio vulgaris str. Hildenborough 2796732 YP_011227.1 CDS DVU2011 NC_002937.3 2089964 2090230 R identified by similarity to GP:2645860; match to protein family HMM PF01527; ISD1, transposase OrfA complement(2089964..2090230) Desulfovibrio vulgaris str. Hildenborough 2796733 YP_011228.1 CDS DVU2012 NC_002937.3 2090399 2090584 R hypothetical protein complement(2090399..2090584) Desulfovibrio vulgaris str. Hildenborough 2796734 YP_011229.1 CDS DVU2013 NC_002937.3 2090668 2092329 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(2090668..2092329) Desulfovibrio vulgaris str. Hildenborough 2796735 YP_011230.1 CDS DVU2014 NC_002937.3 2092404 2093579 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(2092404..2093579) Desulfovibrio vulgaris str. Hildenborough 2796736 YP_011231.1 CDS DVU2015 NC_002937.3 2093666 2093794 D hypothetical protein 2093666..2093794 Desulfovibrio vulgaris str. Hildenborough 2796737 YP_011232.1 CDS DVU2016 NC_002937.3 2093764 2094645 R identified by match to protein family HMM PF00990; diguanylate cyclase complement(2093764..2094645) Desulfovibrio vulgaris str. Hildenborough 2796738 YP_011233.1 CDS DVU2017 NC_002937.3 2094689 2095930 R identified by similarity to GP:7339832; match to protein family HMM PF01610; ISDvu5, transposase complement(2094689..2095930) Desulfovibrio vulgaris str. Hildenborough 2793353 YP_011234.1 CDS DVU2019 NC_002937.3 2096176 2098245 R identified by similarity to OMNI:NTL02MA2298; hypothetical protein complement(2096176..2098245) Desulfovibrio vulgaris str. Hildenborough 2793354 YP_011235.1 CDS DVU2020 NC_002937.3 2098260 2100758 R identified by similarity to GP:20095133; hypothetical protein complement(2098260..2100758) Desulfovibrio vulgaris str. Hildenborough 2793355 YP_011236.1 CDS DVU2021 NC_002937.3 2100755 2101222 R hypothetical protein complement(2100755..2101222) Desulfovibrio vulgaris str. Hildenborough 2793356 YP_011237.1 CDS DVU2022 NC_002937.3 2101222 2104698 R identified by similarity to GP:28629295; hypothetical protein complement(2101222..2104698) Desulfovibrio vulgaris str. Hildenborough 2793357 YP_011238.1 CDS DVU2023 NC_002937.3 2104703 2105242 R hypothetical protein complement(2104703..2105242) Desulfovibrio vulgaris str. Hildenborough 2793358 YP_011239.1 CDS DVU2024 NC_002937.3 2105239 2106303 R identified by similarity to OMNI:NMB2085; hypothetical protein complement(2105239..2106303) Desulfovibrio vulgaris str. Hildenborough 2793359 YP_011240.1 CDS DVU2025 NC_002937.3 2106300 2109851 R identified by similarity to GP:19882263; match to protein family HMM TIGR01612; hypothetical protein complement(2106300..2109851) Desulfovibrio vulgaris str. Hildenborough 2793360 YP_011241.1 CDS DVU2026 NC_002937.3 2109863 2110453 R identified by similarity to GP:19916320; hypothetical protein complement(2109863..2110453) Desulfovibrio vulgaris str. Hildenborough 2793361 YP_011242.1 CDS DVU2027 NC_002937.3 2110636 2110950 D hypothetical protein 2110636..2110950 Desulfovibrio vulgaris str. Hildenborough 2793362 YP_011243.1 CDS DVU2028 NC_002937.3 2111168 2111395 R identified by similarity to OMNI:NT01MC3723; hypothetical protein complement(2111168..2111395) Desulfovibrio vulgaris str. Hildenborough 2794826 YP_011244.1 CDS DVU2029 NC_002937.3 2111440 2111838 D identified by match to protein family HMM PF01527; ISDvu2, transposase OrfA 2111440..2111838 Desulfovibrio vulgaris str. Hildenborough 2794827 YP_011245.1 CDS DVU2030 NC_002937.3 2111835 2112677 D identified by match to protein family HMM PF00665; ISDvu2, transposase OrfB 2111835..2112677 Desulfovibrio vulgaris str. Hildenborough 2794828 YP_011246.1 CDS DVU2031 NC_002937.3 2112978 2113208 R hypothetical protein complement(2112978..2113208) Desulfovibrio vulgaris str. Hildenborough 2794829 YP_011247.1 CDS DVU2032 NC_002937.3 2113963 2114676 D identified by match to protein family HMM PF04404; ERF family protein 2113963..2114676 Desulfovibrio vulgaris str. Hildenborough 2794830 YP_011248.1 CDS DVU2033 NC_002937.3 2114748 2116019 D hypothetical protein 2114748..2116019 Desulfovibrio vulgaris str. Hildenborough 2794831 YP_011249.1 CDS DVU2034 NC_002937.3 2116022 2116387 D hypothetical protein 2116022..2116387 Desulfovibrio vulgaris str. Hildenborough 2794832 YP_011250.1 CDS DVU2035 NC_002937.3 2116384 2116671 R identified by match to protein family HMM PF05016; plasmid stabilization system family protein complement(2116384..2116671) Desulfovibrio vulgaris str. Hildenborough 2794833 YP_011251.1 CDS DVU2036 NC_002937.3 2116661 2116900 R identified by match to protein family HMM PF01402; CopG family transcriptinal regulator complement(2116661..2116900) Desulfovibrio vulgaris str. Hildenborough 2794834 YP_011252.1 CDS DVU2037 NC_002937.3 2116979 2117953 D identified by similarity to SP:P29933; cobS protein 2116979..2117953 Desulfovibrio vulgaris str. Hildenborough 2794835 YP_011253.1 CDS DVU2038 NC_002937.3 2118007 2118303 D hypothetical protein 2118007..2118303 Desulfovibrio vulgaris str. Hildenborough 2794836 YP_011254.1 CDS DVU2039 NC_002937.3 2118372 2118647 D hypothetical protein 2118372..2118647 Desulfovibrio vulgaris str. Hildenborough 2794837 YP_011255.1 CDS DVU2040 NC_002937.3 2118657 2118944 D hypothetical protein 2118657..2118944 Desulfovibrio vulgaris str. Hildenborough 2794838 YP_011256.1 CDS DVU2041 NC_002937.3 2118990 2119985 D identified by similarity to GP:20095150; hypothetical protein 2118990..2119985 Desulfovibrio vulgaris str. Hildenborough 2794839 YP_011257.1 CDS DVU2042 NC_002937.3 2119999 2120793 D identified by match to protein family HMM PF02661; Fic family protein 2119999..2120793 Desulfovibrio vulgaris str. Hildenborough 2794538 YP_011258.1 CDS DVU2043 NC_002937.3 2120862 2122463 D identified by similarity to GP:20095140; hypothetical protein 2120862..2122463 Desulfovibrio vulgaris str. Hildenborough 2794539 YP_011259.1 CDS DVU2044 NC_002937.3 2122572 2122697 D hypothetical protein 2122572..2122697 Desulfovibrio vulgaris str. Hildenborough 2794540 YP_011260.1 CDS DVU2045 NC_002937.3 2122690 2122872 D hypothetical protein 2122690..2122872 Desulfovibrio vulgaris str. Hildenborough 2794541 YP_011261.1 CDS DVU2046 NC_002937.3 2123012 2123182 D hypothetical protein 2123012..2123182 Desulfovibrio vulgaris str. Hildenborough 2794542 YP_011262.1 CDS DVU2047 NC_002937.3 2125275 2125439 D hypothetical protein 2125275..2125439 Desulfovibrio vulgaris str. Hildenborough 2794543 YP_011263.1 CDS DVU2048 NC_002937.3 2125651 2125821 R hypothetical protein complement(2125651..2125821) Desulfovibrio vulgaris str. Hildenborough 2794544 YP_011264.1 CDS DVU2051 NC_002937.3 2127643 2128941 R hypothetical protein complement(2127643..2128941) Desulfovibrio vulgaris str. Hildenborough 2794547 YP_011265.1 CDS DVU2052 NC_002937.3 2129341 2130063 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2129341..2130063 Desulfovibrio vulgaris str. Hildenborough 2794549 YP_011266.1 CDS DVU2053 NC_002937.3 2130293 2130973 D hypothetical protein 2130293..2130973 Desulfovibrio vulgaris str. Hildenborough 2796477 YP_011267.1 CDS DVU2054 NC_002937.3 2130967 2131065 R hypothetical protein complement(2130967..2131065) Desulfovibrio vulgaris str. Hildenborough 2796478 YP_011268.1 CDS metG NC_002937.3 2131143 2133134 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2131143..2133134) Desulfovibrio vulgaris str. Hildenborough 2796479 YP_011269.1 CDS DVU2056 NC_002937.3 2133136 2133258 D hypothetical protein 2133136..2133258 Desulfovibrio vulgaris str. Hildenborough 2796480 YP_011270.1 CDS DVU2057 NC_002937.3 2133364 2134827 R identified by similarity to OMNI:EF2761; match to protein family HMM PF04468; hypothetical protein complement(2133364..2134827) Desulfovibrio vulgaris str. Hildenborough 2796481 YP_011271.1 CDS DVU2058 NC_002937.3 2134985 2135596 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 2134985..2135596 Desulfovibrio vulgaris str. Hildenborough 2796482 YP_011272.1 CDS DVU2059 NC_002937.3 2135611 2136603 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2135611..2136603 Desulfovibrio vulgaris str. Hildenborough 2796483 YP_011273.1 CDS DVU2060 NC_002937.3 2136610 2136714 D hypothetical protein 2136610..2136714 Desulfovibrio vulgaris str. Hildenborough 2796484 YP_011274.1 CDS pfkA NC_002937.3 2136887 2138221 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 2136887..2138221 Desulfovibrio vulgaris str. Hildenborough 2796485 YP_011275.1 CDS DVU2062 NC_002937.3 2138236 2141694 D identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 2138236..2141694 Desulfovibrio vulgaris str. Hildenborough 2796486 YP_011276.1 CDS DVU2063 NC_002937.3 2141691 2144645 D identified by similarity to GP:29338363; hypothetical protein 2141691..2144645 Desulfovibrio vulgaris str. Hildenborough 2796487 YP_011277.1 CDS DVU2064 NC_002937.3 2144757 2145878 D identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 2144757..2145878 Desulfovibrio vulgaris str. Hildenborough 2796488 YP_011278.1 CDS DVU2065 NC_002937.3 2145907 2146116 R hypothetical protein complement(2145907..2146116) Desulfovibrio vulgaris str. Hildenborough 2796489 YP_011279.1 CDS DVU2066 NC_002937.3 2146192 2147616 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase site specific recombinase complement(2146192..2147616) Desulfovibrio vulgaris str. Hildenborough 2793443 YP_011280.1 CDS DVU2067 NC_002937.3 2147609 2148730 R identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(2147609..2148730) Desulfovibrio vulgaris str. Hildenborough 2793444 YP_011281.1 CDS DVU2068 NC_002937.3 2148730 2149572 R identified by similarity to OMNI:TM0854; match to protein family HMM PF01966; HD domain-containing protein complement(2148730..2149572) Desulfovibrio vulgaris str. Hildenborough 2793445 YP_003858616.1 CDS DVU4011 NC_002937.3 2149626 2149958 R hypothetical protein complement(2149626..2149958) Desulfovibrio vulgaris str. Hildenborough 9714849 YP_011282.1 CDS DVU2069 NC_002937.3 2149978 2151969 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing protein DprA complement(2149978..2151969) Desulfovibrio vulgaris str. Hildenborough 2793446 YP_011283.1 CDS DVU2070 NC_002937.3 2151978 2152751 R identified by match to protein family HMM PF00515; hypothetical protein complement(2151978..2152751) Desulfovibrio vulgaris str. Hildenborough 2793447 YP_011284.1 CDS DVU2071 NC_002937.3 2153102 2154058 D hypothetical protein 2153102..2154058 Desulfovibrio vulgaris str. Hildenborough 2793448 YP_011285.1 CDS cheA-3 NC_002937.3 2154133 2157402 R identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA complement(2154133..2157402) Desulfovibrio vulgaris str. Hildenborough 2793449 YP_011286.1 CDS cheY-2 NC_002937.3 2157498 2157866 R identified by similarity to GP:510670; match to protein family HMM PF00072; chemotaxis protein CheY complement(2157498..2157866) Desulfovibrio vulgaris str. Hildenborough 2793450 YP_011287.2 CDS DVU2074 NC_002937.3 2157876 2158526 R identified by similarity to SP:P39802; match to protein family HMM PF01584; chemotaxis protein CheW complement(2157876..2158526) Desulfovibrio vulgaris str. Hildenborough 2793451 YP_011288.1 CDS DVU2075 NC_002937.3 2158520 2159296 R identified by match to protein family HMM PF00991; ParA family protein complement(2158520..2159296) Desulfovibrio vulgaris str. Hildenborough 2793452 YP_011289.1 CDS cheR-2 NC_002937.3 2159347 2160225 R identified by similarity to SP:P07801; chemotaxis protein methyltransferase complement(2159347..2160225) Desulfovibrio vulgaris str. Hildenborough 2793453 YP_011290.1 CDS DVU2077 NC_002937.3 2160222 2162150 R identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130; hypothetical protein complement(2160222..2162150) Desulfovibrio vulgaris str. Hildenborough 2793454 YP_011291.1 CDS cheB-2 NC_002937.3 2162209 2163312 R identified by similarity to SP:Q05522; match to protein family HMM PF00072; match to protein family HMM PF01339; protein-glutamate methylesterase CheB complement(2162209..2163312) Desulfovibrio vulgaris str. Hildenborough 2793455 YP_011292.1 CDS DVU2079 NC_002937.3 2163649 2166261 R identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(2163649..2166261) Desulfovibrio vulgaris str. Hildenborough 2793533 YP_003858617.1 CDS DVU4018 NC_002937.3 2166576 2166914 D hypothetical protein 2166576..2166914 Desulfovibrio vulgaris str. Hildenborough 9714848 YP_011294.1 CDS DVU2081 NC_002937.3 2167122 2167430 R hypothetical protein complement(2167122..2167430) Desulfovibrio vulgaris str. Hildenborough 2793535 YP_011295.1 CDS DVU2082 NC_002937.3 2167481 2168374 D identified by similarity to SP:P02968; match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 2167481..2168374 Desulfovibrio vulgaris str. Hildenborough 2793536 YP_011296.1 CDS relA NC_002937.3 2168573 2170726 R identified by similarity to SP:O54408; GTP pyrophosphokinase complement(2168573..2170726) Desulfovibrio vulgaris str. Hildenborough 2793537 YP_011297.1 CDS DVU2084 NC_002937.3 2170730 2172427 R identified by similarity to SP:P42061; match to protein family HMM PF00496; oligopeptide-binding protein complement(2170730..2172427) Desulfovibrio vulgaris str. Hildenborough 2793538 YP_011298.2 CDS DVU2085 NC_002937.3 2172660 2175875 D identified by match to protein family HMM PF00176; match to protein family HMM PF00271; Snf2 family protein 2172660..2175875 Desulfovibrio vulgaris str. Hildenborough 2793539 YP_011299.1 CDS DVU2086 NC_002937.3 2176130 2177572 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(2176130..2177572) Desulfovibrio vulgaris str. Hildenborough 2793540 YP_011300.1 CDS DVU2087 NC_002937.3 2177571 2178380 D hypothetical protein 2177571..2178380 Desulfovibrio vulgaris str. Hildenborough 2793541 YP_011301.1 CDS DVU2088 NC_002937.3 2178377 2179297 D identified by similarity to OMNI:NTL01BH0391; match to protein family HMM PF00892; hypothetical protein 2178377..2179297 Desulfovibrio vulgaris str. Hildenborough 2793542 YP_011302.1 CDS DVU2089 NC_002937.3 2179302 2179463 D hypothetical protein 2179302..2179463 Desulfovibrio vulgaris str. Hildenborough 2793543 YP_011303.1 CDS DVU2090 NC_002937.3 2179568 2180404 D identified by match to protein family HMM PF00036; EF hand domain-containing protein 2179568..2180404 Desulfovibrio vulgaris str. Hildenborough 2793544 YP_011304.1 CDS thiE-1 NC_002937.3 2180539 2181219 R identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase complement(2180539..2181219) Desulfovibrio vulgaris str. Hildenborough 2793545 YP_011305.1 CDS DVU2092 NC_002937.3 2181488 2182129 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(2181488..2182129) Desulfovibrio vulgaris str. Hildenborough 2795468 YP_011306.1 CDS thiH NC_002937.3 2182114 2183448 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(2182114..2183448) Desulfovibrio vulgaris str. Hildenborough 2795469 YP_011307.1 CDS thiG NC_002937.3 2183451 2184248 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(2183451..2184248) Desulfovibrio vulgaris str. Hildenborough 2795470 YP_011308.1 CDS thiS NC_002937.3 2184248 2184448 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS complement(2184248..2184448) Desulfovibrio vulgaris str. Hildenborough 2795471 YP_011309.1 CDS DVU2096 NC_002937.3 2184974 2185066 R hypothetical protein complement(2184974..2185066) Desulfovibrio vulgaris str. Hildenborough 2795472 YP_011310.1 CDS DVU2097 NC_002937.3 2185336 2186007 D identified by similarity to SP:P03019; match to protein family HMM PF00027; transcriptional regulator 2185336..2186007 Desulfovibrio vulgaris str. Hildenborough 2795473 YP_011311.1 CDS cooS NC_002937.3 2186296 2188185 D identified by similarity to SP:P31896; carbon monoxide dehydrogenase 2186296..2188185 Desulfovibrio vulgaris str. Hildenborough 2795474 YP_011312.1 CDS DVU2099 NC_002937.3 2188270 2189151 D identified by similarity to SP:P31897; match to protein family HMM PF00991; carbon monoxide dehydrogenase accessory protein CooC 2188270..2189151 Desulfovibrio vulgaris str. Hildenborough 2795475 YP_011313.1 CDS DVU2100 NC_002937.3 2189292 2189708 R identified by match to protein family HMM PF00582; universal stress protein complement(2189292..2189708) Desulfovibrio vulgaris str. Hildenborough 2795476 YP_011314.1 CDS DVU2101 NC_002937.3 2189934 2195285 R identified by similarity to OMNI:CC1604; match to protein family HMM PF04357; hypothetical protein complement(2189934..2195285) Desulfovibrio vulgaris str. Hildenborough 2795477 YP_011315.1 CDS DVU2102 NC_002937.3 2195285 2197615 R identified by match to protein family HMM PF01103; OMP85 family outer membrane protein complement(2195285..2197615) Desulfovibrio vulgaris str. Hildenborough 2795478 YP_011316.1 CDS DVU2103 NC_002937.3 2197890 2198753 R identified by match to protein family HMM PF00037; match to protein family HMM PF00991; iron-sulfur cluster-binding/ATPase complement(2197890..2198753) Desulfovibrio vulgaris str. Hildenborough 2795479 YP_011317.1 CDS DVU2104 NC_002937.3 2198750 2199655 R identified by match to protein family HMM PF00037; match to protein family HMM PF00991; iron-sulfur cluster-binding/ATPase complement(2198750..2199655) Desulfovibrio vulgaris str. Hildenborough 2795480 YP_011318.1 CDS DVU2105 NC_002937.3 2199676 2200188 R hypothetical protein complement(2199676..2200188) Desulfovibrio vulgaris str. Hildenborough 2793377 YP_011319.1 CDS DVU2106 NC_002937.3 2200357 2201733 D identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 2200357..2201733 Desulfovibrio vulgaris str. Hildenborough 2793378 YP_011320.1 CDS DVU2107 NC_002937.3 2201950 2202501 D hypothetical protein 2201950..2202501 Desulfovibrio vulgaris str. Hildenborough 2793379 YP_011321.1 CDS DVU2108 NC_002937.3 2202492 2202851 D identified by match to protein family HMM PF02579; hypothetical protein 2202492..2202851 Desulfovibrio vulgaris str. Hildenborough 2793380 YP_011322.1 CDS DVU2109 NC_002937.3 2202848 2204311 D identified by match to protein family HMM PF02579; hypothetical protein 2202848..2204311 Desulfovibrio vulgaris str. Hildenborough 2793381 YP_011323.1 CDS DVU2110 NC_002937.3 2204660 2206297 R identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease complement(2204660..2206297) Desulfovibrio vulgaris str. Hildenborough 2793382 YP_011324.1 CDS DVU2111 NC_002937.3 2206454 2207356 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2206454..2207356 Desulfovibrio vulgaris str. Hildenborough 2793383 YP_011325.1 CDS DVU2112 NC_002937.3 2207353 2207772 D hypothetical protein 2207353..2207772 Desulfovibrio vulgaris str. Hildenborough 2793384 YP_011326.1 CDS DVU2113 NC_002937.3 2208084 2209415 R identified by similarity to SP:P31466; match to protein family HMM PF00860; xanthine/uracil permease complement(2208084..2209415) Desulfovibrio vulgaris str. Hildenborough 2793385 YP_011327.1 CDS DVU2114 NC_002937.3 2210047 2211435 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 2210047..2211435 Desulfovibrio vulgaris str. Hildenborough 2793386 YP_011328.1 CDS DVU2115 NC_002937.3 2211635 2211826 R hypothetical protein complement(2211635..2211826) Desulfovibrio vulgaris str. Hildenborough 2793387 YP_011329.1 CDS DVU2116 NC_002937.3 2212101 2212274 D identified by similarity to OMNI:NTL01RSA1092; match to protein family HMM PF04964; pilin 2212101..2212274 Desulfovibrio vulgaris str. Hildenborough 2793388 YP_011330.1 CDS DVU2117 NC_002937.3 2212495 2213061 D hypothetical protein 2212495..2213061 Desulfovibrio vulgaris str. Hildenborough 2793389 YP_011331.1 CDS DVU2118 NC_002937.3 2213071 2213889 D identified by similarity to OMNI:CT0429; hypothetical protein 2213071..2213889 Desulfovibrio vulgaris str. Hildenborough 2793390 YP_011332.1 CDS DVU2119 NC_002937.3 2213886 2215340 D identified by match to protein family HMM PF00263; type II/III secretion system protein 2213886..2215340 Desulfovibrio vulgaris str. Hildenborough 2795500 YP_011333.1 CDS DVU2120 NC_002937.3 2215350 2215754 D hypothetical protein 2215350..2215754 Desulfovibrio vulgaris str. Hildenborough 2795501 YP_011334.1 CDS DVU2121 NC_002937.3 2215766 2216980 D identified by match to protein family HMM PF00072; response regulator 2215766..2216980 Desulfovibrio vulgaris str. Hildenborough 2795502 YP_011335.1 CDS DVU2122 NC_002937.3 2217377 2218810 D identified by similarity to GP:10334985; match to protein family HMM PF00437; type II/IV secretion system protein 2217377..2218810 Desulfovibrio vulgaris str. Hildenborough 2795503 YP_011336.1 CDS DVU2123 NC_002937.3 2218890 2219855 D identified by similarity to OMNI:NTL01RS0651; hypothetical protein 2218890..2219855 Desulfovibrio vulgaris str. Hildenborough 2795504 YP_011337.1 CDS DVU2124 NC_002937.3 2219984 2220838 D identified by similarity to OMNI:NTL01SM00146; hypothetical protein 2219984..2220838 Desulfovibrio vulgaris str. Hildenborough 2795505 YP_011338.1 CDS DVU2125 NC_002937.3 2220892 2222007 D identified by match to protein family HMM PF00515; hypothetical protein 2220892..2222007 Desulfovibrio vulgaris str. Hildenborough 2795506 YP_011339.1 CDS DVU2126 NC_002937.3 2222196 2222585 D hypothetical protein 2222196..2222585 Desulfovibrio vulgaris str. Hildenborough 2795507 YP_011340.1 CDS DVU2127 NC_002937.3 2222596 2223858 D identified by match to protein family HMM PF00092; von Willebrand factor A 2222596..2223858 Desulfovibrio vulgaris str. Hildenborough 2795508 YP_011341.1 CDS DVU2128 NC_002937.3 2223874 2224368 D hypothetical protein 2223874..2224368 Desulfovibrio vulgaris str. Hildenborough 2795509 YP_011342.1 CDS DVU2129 NC_002937.3 2224406 2226877 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 2224406..2226877 Desulfovibrio vulgaris str. Hildenborough 2795510 YP_011343.1 CDS DVU2130 NC_002937.3 2226864 2227526 R hypothetical protein complement(2226864..2227526) Desulfovibrio vulgaris str. Hildenborough 2795511 YP_011344.1 CDS DVU2131 NC_002937.3 2227823 2228302 D hypothetical protein 2227823..2228302 Desulfovibrio vulgaris str. Hildenborough 2795512 YP_011345.1 CDS DVU2132 NC_002937.3 2228569 2228826 R hypothetical protein complement(2228569..2228826) Desulfovibrio vulgaris str. Hildenborough 2795513 YP_011346.1 CDS DVU2133 NC_002937.3 2228881 2230620 R hypothetical protein complement(2228881..2230620) Desulfovibrio vulgaris str. Hildenborough 2794212 YP_011347.1 CDS DVU2134 NC_002937.3 2230755 2230883 D hypothetical protein 2230755..2230883 Desulfovibrio vulgaris str. Hildenborough 2794213 YP_011348.1 CDS DVU2135 NC_002937.3 2231340 2231891 D hypothetical protein 2231340..2231891 Desulfovibrio vulgaris str. Hildenborough 2794214 YP_011349.1 CDS DVU2136 NC_002937.3 2231969 2233150 D hypothetical protein 2231969..2233150 Desulfovibrio vulgaris str. Hildenborough 2794215 YP_011350.1 CDS sucCD NC_002937.3 2233371 2235500 R identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthase subunit beta complement(2233371..2235500) Desulfovibrio vulgaris str. Hildenborough 2794216 YP_011351.1 CDS DVU2138 NC_002937.3 2235537 2236190 R identified by similarity to OMNI:NTL03CP2602; hypothetical protein complement(2235537..2236190) Desulfovibrio vulgaris str. Hildenborough 2794217 YP_011352.1 CDS DVU2139 NC_002937.3 2236243 2237562 R identified by match to protein family HMM PF00850; histone deacetylase complement(2236243..2237562) Desulfovibrio vulgaris str. Hildenborough 2794218 YP_011353.1 CDS tmk NC_002937.3 2237716 2238390 R identified by similarity to SP:P37537; match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase complement(2237716..2238390) Desulfovibrio vulgaris str. Hildenborough 2794219 YP_011354.1 CDS DVU2141 NC_002937.3 2238366 2239403 R identified by match to protein family HMM PF01336; match to protein family HMM PF01966; match to protein family HMM TIGR00277; nucleic acid-binding protein complement(2238366..2239403) Desulfovibrio vulgaris str. Hildenborough 2794220 YP_011355.1 CDS surE NC_002937.3 2239541 2240293 D identified by similarity to SP:P36664; match to protein family HMM PF01975; match to protein family HMM TIGR00087; acid phosphatase SurE 2239541..2240293 Desulfovibrio vulgaris str. Hildenborough 2794221 YP_011356.1 CDS fba NC_002937.3 2240742 2241665 D identified by similarity to SP:P13243; match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase 2240742..2241665 Desulfovibrio vulgaris str. Hildenborough 2794222 YP_011357.1 CDS gap-2 NC_002937.3 2241689 2242690 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 2241689..2242690 Desulfovibrio vulgaris str. Hildenborough 2794223 YP_011358.1 CDS DVU2145 NC_002937.3 2243015 2243665 R identified by similarity to SP:P22616; chloramphenicol acetyltransferase complement(2243015..2243665) Desulfovibrio vulgaris str. Hildenborough 2794224 YP_011359.1 CDS DVU2146 NC_002937.3 2243814 2243969 D hypothetical protein 2243814..2243969 Desulfovibrio vulgaris str. Hildenborough 2794225 YP_011360.1 CDS DVU2147 NC_002937.3 2244026 2245534 R identified by match to protein family HMM PF03313; match to protein family HMM PF03315; L-serine dehydratase complement(2244026..2245534) Desulfovibrio vulgaris str. Hildenborough 2793406 YP_011361.1 CDS DVU2148 NC_002937.3 2246009 2247403 D identified by similarity to SP:P39319; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 2246009..2247403 Desulfovibrio vulgaris str. Hildenborough 2793407 YP_011362.1 CDS DVU2149 NC_002937.3 2247518 2249257 R identified by similarity to GP:21666416; match to protein family HMM PF05670; hypothetical protein complement(2247518..2249257) Desulfovibrio vulgaris str. Hildenborough 2793408 YP_011363.1 CDS DVU2150 NC_002937.3 2249277 2249639 R identified by similarity to SP:P18274; match to protein family HMM PF01258; dnaK suppressor protein complement(2249277..2249639) Desulfovibrio vulgaris str. Hildenborough 2793409 YP_011364.1 CDS DVU2151 NC_002937.3 2250828 2251187 R identified by similarity to SP:P54342; hypothetical protein complement(2250828..2251187) Desulfovibrio vulgaris str. Hildenborough 2793414 YP_011365.1 CDS DVU2152 NC_002937.3 2251197 2252213 R hypothetical protein complement(2251197..2252213) Desulfovibrio vulgaris str. Hildenborough 2796563 YP_011366.1 CDS DVU2153 NC_002937.3 2252215 2256255 R tail fiber protein complement(2252215..2256255) Desulfovibrio vulgaris str. Hildenborough 2796564 YP_011367.1 CDS DVU2154 NC_002937.3 2256245 2256670 R identified by match to protein family HMM PF00877; tail assembly protein complement(2256245..2256670) Desulfovibrio vulgaris str. Hildenborough 2796565 YP_011368.1 CDS DVU2155 NC_002937.3 2256670 2257095 R hypothetical protein complement(2256670..2257095) Desulfovibrio vulgaris str. Hildenborough 2796566 YP_011369.1 CDS DVU2156 NC_002937.3 2257176 2257541 R hypothetical protein complement(2257176..2257541) Desulfovibrio vulgaris str. Hildenborough 2796567 YP_011370.1 CDS DVU2157 NC_002937.3 2257541 2260462 R tail tape meausure protein complement(2257541..2260462) Desulfovibrio vulgaris str. Hildenborough 2796568 YP_011371.1 CDS DVU2158 NC_002937.3 2260761 2261111 R hypothetical protein complement(2260761..2261111) Desulfovibrio vulgaris str. Hildenborough 2796569 YP_011372.1 CDS DVU2159 NC_002937.3 2261120 2262064 R hypothetical protein complement(2261120..2262064) Desulfovibrio vulgaris str. Hildenborough 2796570 YP_011373.1 CDS DVU2160 NC_002937.3 2262082 2262549 R hypothetical protein complement(2262082..2262549) Desulfovibrio vulgaris str. Hildenborough 2796571 YP_011374.1 CDS DVU2161 NC_002937.3 2262546 2263256 R hypothetical protein complement(2262546..2263256) Desulfovibrio vulgaris str. Hildenborough 2796572 YP_011375.1 CDS DVU2162 NC_002937.3 2263256 2263585 R hypothetical protein complement(2263256..2263585) Desulfovibrio vulgaris str. Hildenborough 2796573 YP_011376.1 CDS DVU2163 NC_002937.3 2263606 2263770 R hypothetical protein complement(2263606..2263770) Desulfovibrio vulgaris str. Hildenborough 2796574 YP_011377.1 CDS DVU2164 NC_002937.3 2263763 2264173 R lipoprotein complement(2263763..2264173) Desulfovibrio vulgaris str. Hildenborough 2796575 YP_011378.1 CDS DVU2165 NC_002937.3 2264316 2264816 R identified by match to protein family HMM PF01464; lysozyme complement(2264316..2264816) Desulfovibrio vulgaris str. Hildenborough 2796576 YP_011379.1 CDS DVU2166 NC_002937.3 2264839 2265237 R identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593; holin complement(2264839..2265237) Desulfovibrio vulgaris str. Hildenborough 2793391 YP_011380.1 CDS DVU2167 NC_002937.3 2265367 2265576 R hypothetical protein complement(2265367..2265576) Desulfovibrio vulgaris str. Hildenborough 2793392 YP_011381.1 CDS DVU2168 NC_002937.3 2265579 2266604 R identified by match to protein family HMM PF03864; major head protein complement(2265579..2266604) Desulfovibrio vulgaris str. Hildenborough 2793393 YP_011382.1 CDS DVU2169 NC_002937.3 2266615 2266983 R identified by similarity to GP:311850; hypothetical protein complement(2266615..2266983) Desulfovibrio vulgaris str. Hildenborough 2793394 YP_011383.1 CDS DVU2170 NC_002937.3 2266987 2268207 R identified by match to protein family HMM PF01343; minor capsid protein C complement(2266987..2268207) Desulfovibrio vulgaris str. Hildenborough 2793395 YP_011384.1 CDS DVU2171 NC_002937.3 2268224 2269777 R identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; portal protein complement(2268224..2269777) Desulfovibrio vulgaris str. Hildenborough 2793396 YP_011385.1 CDS DVU2172 NC_002937.3 2269777 2269998 R hypothetical protein complement(2269777..2269998) Desulfovibrio vulgaris str. Hildenborough 2793397 YP_011386.1 CDS DVU2173 NC_002937.3 2269991 2270116 D hypothetical protein 2269991..2270116 Desulfovibrio vulgaris str. Hildenborough 2793398 YP_011387.1 CDS DVU2174 NC_002937.3 2270230 2270907 R hypothetical protein complement(2270230..2270907) Desulfovibrio vulgaris str. Hildenborough 2793399 YP_011388.1 CDS DVU2175 NC_002937.3 2270961 2275748 R identified by match to protein family HMM PF00271; match to protein family HMM TIGR01612; adenine specific DNA methyltransferase complement(2270961..2275748) Desulfovibrio vulgaris str. Hildenborough 2793400 YP_011389.1 CDS DVU2176 NC_002937.3 2275825 2276004 D hypothetical protein 2275825..2276004 Desulfovibrio vulgaris str. Hildenborough 2793401 YP_011390.1 CDS DVU2177 NC_002937.3 2276354 2277667 R hypothetical protein complement(2276354..2277667) Desulfovibrio vulgaris str. Hildenborough 2793402 YP_011391.1 CDS DVU2178 NC_002937.3 2277993 2278835 R identified by match to protein family HMM PF00665; ISDvu2, transposase OrfB complement(2277993..2278835) Desulfovibrio vulgaris str. Hildenborough 2793403 YP_011392.1 CDS DVU2179 NC_002937.3 2278832 2279230 R identified by match to protein family HMM PF01527; ISDvu2, transposase OrfA complement(2278832..2279230) Desulfovibrio vulgaris str. Hildenborough 2793404 YP_011393.1 CDS DVU2180 NC_002937.3 2279386 2279526 D hypothetical protein 2279386..2279526 Desulfovibrio vulgaris str. Hildenborough 2793405 YP_011394.1 CDS DVU2181 NC_002937.3 2279617 2280495 D antirepressor 2279617..2280495 Desulfovibrio vulgaris str. Hildenborough 2795749 YP_011395.1 CDS DVU2182 NC_002937.3 2280733 2280864 D hypothetical protein 2280733..2280864 Desulfovibrio vulgaris str. Hildenborough 2795750 YP_011396.1 CDS DVU2183 NC_002937.3 2280885 2281616 D hypothetical protein 2280885..2281616 Desulfovibrio vulgaris str. Hildenborough 2795751 YP_011397.1 CDS DVU2184 NC_002937.3 2281651 2281869 R identified by match to protein family HMM TIGR01764; DNA-binding protein complement(2281651..2281869) Desulfovibrio vulgaris str. Hildenborough 2795752 YP_011398.1 CDS DVU2185 NC_002937.3 2281873 2283798 R terminase large subunit complement(2281873..2283798) Desulfovibrio vulgaris str. Hildenborough 2795753 YP_011399.1 CDS DVU2186 NC_002937.3 2283842 2284855 R hypothetical protein complement(2283842..2284855) Desulfovibrio vulgaris str. Hildenborough 2795754 YP_011400.1 CDS DVU2187 NC_002937.3 2285284 2285814 R hypothetical protein complement(2285284..2285814) Desulfovibrio vulgaris str. Hildenborough 2795755 YP_011401.1 CDS DVU2188 NC_002937.3 2286231 2288723 R identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613; primase complement(2286231..2288723) Desulfovibrio vulgaris str. Hildenborough 2795756 YP_011402.1 CDS DVU2189 NC_002937.3 2288804 2289244 R transcriptional regulator cII complement(2288804..2289244) Desulfovibrio vulgaris str. Hildenborough 2795757 YP_011403.1 CDS DVU2190 NC_002937.3 2289318 2289512 R transcriptional regulator complement(2289318..2289512) Desulfovibrio vulgaris str. Hildenborough 2795758 YP_003858618.1 CDS DVU4014 NC_002937.3 2289599 2289883 D hypothetical protein 2289599..2289883 Desulfovibrio vulgaris str. Hildenborough 9714847 YP_011404.1 CDS DVU2191 NC_002937.3 2290097 2290453 D hypothetical protein 2290097..2290453 Desulfovibrio vulgaris str. Hildenborough 2795759 YP_011405.1 CDS DVU2192 NC_002937.3 2290446 2290601 D hypothetical protein 2290446..2290601 Desulfovibrio vulgaris str. Hildenborough 2795760 YP_011406.1 CDS DVU2193 NC_002937.3 2290628 2291182 D hypothetical protein 2290628..2291182 Desulfovibrio vulgaris str. Hildenborough 2795761 YP_011407.1 CDS DVU2194 NC_002937.3 2291229 2291918 D hypothetical protein 2291229..2291918 Desulfovibrio vulgaris str. Hildenborough 2795762 YP_011408.1 CDS DVU2195 NC_002937.3 2291911 2292168 D hypothetical protein 2291911..2292168 Desulfovibrio vulgaris str. Hildenborough 2795763 YP_011409.1 CDS DVU2196 NC_002937.3 2292218 2292763 D hypothetical protein 2292218..2292763 Desulfovibrio vulgaris str. Hildenborough 2793659 YP_011410.1 CDS DVU2197 NC_002937.3 2292764 2293693 R identified by match to protein family HMM PF00589; phage integrase site specific recombinase complement(2292764..2293693) Desulfovibrio vulgaris str. Hildenborough 2793660 YP_011411.1 CDS DVU2198 NC_002937.3 2294218 2294415 R hypothetical protein complement(2294218..2294415) Desulfovibrio vulgaris str. Hildenborough 2793661 YP_011412.1 CDS DVU2199 NC_002937.3 2294467 2294691 R hypothetical protein complement(2294467..2294691) Desulfovibrio vulgaris str. Hildenborough 2793662 YP_011413.1 CDS DVU2200 NC_002937.3 2294814 2295194 D hypothetical protein 2294814..2295194 Desulfovibrio vulgaris str. Hildenborough 2793663 YP_011414.1 CDS DVU2201 NC_002937.3 2296002 2297159 D identified by similarity to SP:Q24857; match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 2296002..2297159 Desulfovibrio vulgaris str. Hildenborough 2793664 YP_011415.1 CDS DVU2202 NC_002937.3 2297470 2298987 R identified by match to protein family HMM PF00497; match to protein family HMM PF01464; transglycosylase complement(2297470..2298987) Desulfovibrio vulgaris str. Hildenborough 2793665 YP_011416.1 CDS DVU2203 NC_002937.3 2299312 2299686 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; L-PSP family endoribonuclease 2299312..2299686 Desulfovibrio vulgaris str. Hildenborough 2793666 YP_011417.1 CDS tnaA NC_002937.3 2299796 2301184 D tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 2299796..2301184 Desulfovibrio vulgaris str. Hildenborough 2793667 YP_011418.1 CDS DVU2205 NC_002937.3 2301355 2302632 D identified by similarity to SP:P22306; match to protein family HMM PF03222; match to protein family HMM TIGR00837; tryptophan-specific transport protein 2301355..2302632 Desulfovibrio vulgaris str. Hildenborough 2793668 YP_011419.1 CDS DVU2206 NC_002937.3 2302938 2303609 R hypothetical protein complement(2302938..2303609) Desulfovibrio vulgaris str. Hildenborough 2793669 YP_011420.1 CDS DVU2207 NC_002937.3 2303661 2303834 R hypothetical protein complement(2303661..2303834) Desulfovibrio vulgaris str. Hildenborough 2793670 YP_011421.1 CDS DVU2208 NC_002937.3 2303762 2303875 R hypothetical protein complement(2303762..2303875) Desulfovibrio vulgaris str. Hildenborough 2793671 YP_011422.1 CDS DVU2209 NC_002937.3 2304321 2305043 D identified by similarity to GP:18252514; hypothetical protein 2304321..2305043 Desulfovibrio vulgaris str. Hildenborough 2795356 YP_011423.1 CDS DVU2210 NC_002937.3 2305040 2306767 D identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702; hypothetical protein 2305040..2306767 Desulfovibrio vulgaris str. Hildenborough 2795357 YP_011424.1 CDS DVU2211 NC_002937.3 2306914 2309532 R hypothetical protein complement(2306914..2309532) Desulfovibrio vulgaris str. Hildenborough 2795358 YP_011425.1 CDS DVU2212 NC_002937.3 2309563 2309925 D identified by similarity to OMNI:NTL01MT00146; hypothetical protein 2309563..2309925 Desulfovibrio vulgaris str. Hildenborough 2795359 YP_011426.1 CDS DVU2213 NC_002937.3 2310270 2310971 D identified by match to protein family HMM PF00565; nuclease domain-containing protein 2310270..2310971 Desulfovibrio vulgaris str. Hildenborough 2795360 YP_011427.1 CDS DVU2214 NC_002937.3 2311050 2311223 D hypothetical protein 2311050..2311223 Desulfovibrio vulgaris str. Hildenborough 2795361 YP_011428.1 CDS DVU2215 NC_002937.3 2311376 2311645 D identified by match to protein family HMM PF00076; RNA-binding protein 2311376..2311645 Desulfovibrio vulgaris str. Hildenborough 2795362 YP_011429.1 CDS infA NC_002937.3 2311725 2311988 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2311725..2311988 Desulfovibrio vulgaris str. Hildenborough 2795363 YP_011430.1 CDS DVU2217 NC_002937.3 2312523 2313029 R identified by similarity to SP:P45473; match to protein family HMM PF00583; acetyltransferase complement(2312523..2313029) Desulfovibrio vulgaris str. Hildenborough 2795364 YP_011431.1 CDS DVU2218 NC_002937.3 2313101 2314147 R identified by match to protein family HMM PF03193; GTP-binding protein complement(2313101..2314147) Desulfovibrio vulgaris str. Hildenborough 2795365 YP_011432.1 CDS DVU2219 NC_002937.3 2314352 2314531 R hypothetical protein complement(2314352..2314531) Desulfovibrio vulgaris str. Hildenborough 2795366 YP_011433.1 CDS DVU2220 NC_002937.3 2314522 2314791 D identified by similarity to OMNI:NTL03CP0738; hypothetical protein 2314522..2314791 Desulfovibrio vulgaris str. Hildenborough 2795367 YP_011434.1 CDS DVU2221 NC_002937.3 2314837 2314977 D hypothetical protein 2314837..2314977 Desulfovibrio vulgaris str. Hildenborough 2795368 YP_011435.1 CDS ssb NC_002937.3 2314982 2315512 R identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(2314982..2315512) Desulfovibrio vulgaris str. Hildenborough 2795369 YP_011436.1 CDS DVU2223 NC_002937.3 2315552 2315896 R hypothetical protein complement(2315552..2315896) Desulfovibrio vulgaris str. Hildenborough 2795550 YP_011437.1 CDS DVU2224 NC_002937.3 2315899 2316549 R hypothetical protein complement(2315899..2316549) Desulfovibrio vulgaris str. Hildenborough 2795551 YP_011438.1 CDS DVU2225 NC_002937.3 2316568 2318823 R acetyl-CoA carboxylase carboxyltransferase subunits alpha and beta complement(2316568..2318823) Desulfovibrio vulgaris str. Hildenborough 2795552 YP_011439.1 CDS DVU2226 NC_002937.3 2318897 2320312 R identified by match to protein family HMM PF00289; match to protein family HMM PF02786; acetyl-CoA carboxylase, biotin carboxylase complement(2318897..2320312) Desulfovibrio vulgaris str. Hildenborough 2795553 YP_011440.1 CDS DVU2227 NC_002937.3 2320293 2320736 R hypothetical protein complement(2320293..2320736) Desulfovibrio vulgaris str. Hildenborough 2795554 YP_011441.1 CDS DVU2228 NC_002937.3 2320741 2321475 R identified by similarity to GP:4426946; match to protein family HMM PF00691; motB protein complement(2320741..2321475) Desulfovibrio vulgaris str. Hildenborough 2795555 YP_011442.1 CDS motA-2 NC_002937.3 2321459 2322220 R identified by similarity to SP:P28611; match to protein family HMM PF01618; chemotaxis protein MotA complement(2321459..2322220) Desulfovibrio vulgaris str. Hildenborough 2795556 YP_011443.1 CDS deoD NC_002937.3 2322336 2323160 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2322336..2323160 Desulfovibrio vulgaris str. Hildenborough 2795557 YP_011444.1 CDS typA NC_002937.3 2323364 2325205 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 2323364..2325205 Desulfovibrio vulgaris str. Hildenborough 2795558 YP_011445.1 CDS DVU2232 NC_002937.3 2325641 2326009 D hypothetical protein 2325641..2326009 Desulfovibrio vulgaris str. Hildenborough 2795559 YP_011446.1 CDS DVU2233 NC_002937.3 2326274 2327251 R identified by similarity to OMNI:NTL03PA00369; match to protein family HMM PF00561; hypothetical protein complement(2326274..2327251) Desulfovibrio vulgaris str. Hildenborough 2795560 YP_011447.1 CDS DVU2234 NC_002937.3 2327596 2328765 D identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275; hypothetical protein 2327596..2328765 Desulfovibrio vulgaris str. Hildenborough 2795561 YP_011448.1 CDS DVU2235 NC_002937.3 2328874 2329083 D identified by similarity to OMNI:NTL03CP1242; hypothetical protein 2328874..2329083 Desulfovibrio vulgaris str. Hildenborough 2795562 YP_011449.1 CDS DVU2236 NC_002937.3 2329093 2329197 D hypothetical protein 2329093..2329197 Desulfovibrio vulgaris str. Hildenborough 2795563 YP_011450.1 CDS DVU2237 NC_002937.3 2329256 2330218 R identified by match to protein family HMM PF03186; cobalamin biosynthesis protein CobD complement(2329256..2330218) Desulfovibrio vulgaris str. Hildenborough 2795564 YP_011451.1 CDS DVU2238 NC_002937.3 2330215 2330694 R identified by match to protein family HMM PF00588; RNA methyltransferase complement(2330215..2330694) Desulfovibrio vulgaris str. Hildenborough 2795390 YP_011452.1 CDS DVU2239 NC_002937.3 2330937 2332382 R identified by match to protein family HMM PF00933; glycosyl hydrolase complement(2330937..2332382) Desulfovibrio vulgaris str. Hildenborough 2795391 YP_011453.1 CDS DVU2240 NC_002937.3 2332382 2334034 R identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoinase/oxoprolinase complement(2332382..2334034) Desulfovibrio vulgaris str. Hildenborough 2795392 YP_011454.1 CDS pdxA NC_002937.3 2334036 2335256 R identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; pyridoxal phosphate biosynthetic protein PdxA complement(2334036..2335256) Desulfovibrio vulgaris str. Hildenborough 2795393 YP_011455.1 CDS DVU2242 NC_002937.3 2335527 2336474 R identified by similarity to SP:Q47898; match to protein family HMM PF01112; asparaginase complement(2335527..2336474) Desulfovibrio vulgaris str. Hildenborough 2795394 YP_011456.1 CDS glgB NC_002937.3 2336760 2338682 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(2336760..2338682) Desulfovibrio vulgaris str. Hildenborough 2795395 YP_011457.1 CDS glgA NC_002937.3 2338679 2340148 R identified by similarity to SP:P08323; match to protein family HMM PF00534; match to protein family HMM TIGR02095; glycogen synthase complement(2338679..2340148) Desulfovibrio vulgaris str. Hildenborough 2795396 YP_011458.1 CDS DVU2245 NC_002937.3 2340177 2340593 R identified by match to protein family HMM PF00293; mutT/nudix family protein complement(2340177..2340593) Desulfovibrio vulgaris str. Hildenborough 2795397 YP_003858619.1 CDS DVU4006 NC_002937.3 2341387 2341623 R hypothetical protein complement(2341387..2341623) Desulfovibrio vulgaris str. Hildenborough 9714846 YP_011459.1 CDS DVU2246 NC_002937.3 2341713 2343884 D identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein 2341713..2343884 Desulfovibrio vulgaris str. Hildenborough 2795398 YP_011460.1 CDS DVU2247 NC_002937.3 2344057 2344671 R identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein complement(2344057..2344671) Desulfovibrio vulgaris str. Hildenborough 2795399 YP_011461.1 CDS DVU2248 NC_002937.3 2344699 2344803 D hypothetical protein 2344699..2344803 Desulfovibrio vulgaris str. Hildenborough 2795400 YP_011462.1 CDS DVU2249 NC_002937.3 2344778 2344918 R hypothetical protein complement(2344778..2344918) Desulfovibrio vulgaris str. Hildenborough 2795401 YP_011463.1 CDS DVU2250 NC_002937.3 2344952 2346607 R identified by match to protein family HMM PF00501; AMP-binding protein complement(2344952..2346607) Desulfovibrio vulgaris str. Hildenborough 2795402 YP_011464.1 CDS DVU2251 NC_002937.3 2346940 2347500 R identified by match to protein family HMM PF01381; DNA-binding protein complement(2346940..2347500) Desulfovibrio vulgaris str. Hildenborough 2795403 YP_011465.1 CDS dnaA-2 NC_002937.3 2347717 2349192 R identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA complement(2347717..2349192) Desulfovibrio vulgaris str. Hildenborough 2794074 YP_011466.1 CDS DVU2253 NC_002937.3 2349297 2349479 D hypothetical protein 2349297..2349479 Desulfovibrio vulgaris str. Hildenborough 2794075 YP_011467.1 CDS thyX NC_002937.3 2349512 2350249 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(2349512..2350249) Desulfovibrio vulgaris str. Hildenborough 2794076 YP_011468.1 CDS ruvB NC_002937.3 2350267 2351229 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2350267..2351229) Desulfovibrio vulgaris str. Hildenborough 2794077 YP_011469.1 CDS ruvA NC_002937.3 2351230 2351838 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2351230..2351838) Desulfovibrio vulgaris str. Hildenborough 2794078 YP_011470.1 CDS DVU2257 NC_002937.3 2351877 2352035 R hypothetical protein complement(2351877..2352035) Desulfovibrio vulgaris str. Hildenborough 2794079 YP_011471.1 CDS ruvC NC_002937.3 2352212 2352712 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2352212..2352712) Desulfovibrio vulgaris str. Hildenborough 2794080 YP_011472.1 CDS DVU2259 NC_002937.3 2352787 2353530 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(2352787..2353530) Desulfovibrio vulgaris str. Hildenborough 2794081 YP_011473.1 CDS rrmJ NC_002937.3 2353584 2354198 R identified by similarity to SP:P28692; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J complement(2353584..2354198) Desulfovibrio vulgaris str. Hildenborough 2794082 YP_011474.1 CDS DVU2261 NC_002937.3 2354254 2356068 D hypothetical protein 2354254..2356068 Desulfovibrio vulgaris str. Hildenborough 2794083 YP_011475.1 CDS DVU2262 NC_002937.3 2356421 2356549 R hypothetical protein complement(2356421..2356549) Desulfovibrio vulgaris str. Hildenborough 2794085 YP_011476.1 CDS DVU2263 NC_002937.3 2356696 2358621 R identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; outer membrane autotransporter complement(2356696..2358621) Desulfovibrio vulgaris str. Hildenborough 2794086 YP_011477.1 CDS DVU2264 NC_002937.3 2358673 2358825 D hypothetical protein 2358673..2358825 Desulfovibrio vulgaris str. Hildenborough 2794087 YP_011478.1 CDS DVU2265 NC_002937.3 2358809 2358913 R hypothetical protein complement(2358809..2358913) Desulfovibrio vulgaris str. Hildenborough 2795221 YP_011479.1 CDS DVU2266 NC_002937.3 2358928 2359056 R hypothetical protein complement(2358928..2359056) Desulfovibrio vulgaris str. Hildenborough 2795222 YP_011480.1 CDS DVU2267 NC_002937.3 2359130 2359423 R hypothetical protein complement(2359130..2359423) Desulfovibrio vulgaris str. Hildenborough 2795223 YP_011481.1 CDS DVU2268 NC_002937.3 2359465 2359584 D hypothetical protein 2359465..2359584 Desulfovibrio vulgaris str. Hildenborough 2795224 YP_011482.1 CDS DVU2269 NC_002937.3 2359725 2359892 R hypothetical protein complement(2359725..2359892) Desulfovibrio vulgaris str. Hildenborough 2795225 YP_011483.1 CDS DVU2270 NC_002937.3 2359905 2360018 R hypothetical protein complement(2359905..2360018) Desulfovibrio vulgaris str. Hildenborough 2795226 YP_011484.1 CDS DVU2271 NC_002937.3 2360039 2360932 R identified by similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate-lyase activating enzyme complement(2360039..2360932) Desulfovibrio vulgaris str. Hildenborough 2795227 YP_011485.1 CDS DVU2272 NC_002937.3 2361044 2363497 R identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901; formate acetyltransferase complement(2361044..2363497) Desulfovibrio vulgaris str. Hildenborough 2795228 YP_011486.1 CDS DVU2273 NC_002937.3 2363581 2363910 D hypothetical protein 2363581..2363910 Desulfovibrio vulgaris str. Hildenborough 2795229 YP_011487.1 CDS DVU2274 NC_002937.3 2363792 2363929 R hypothetical protein complement(2363792..2363929) Desulfovibrio vulgaris str. Hildenborough 2795230 YP_011488.1 CDS DVU2275 NC_002937.3 2363991 2365445 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 2363991..2365445 Desulfovibrio vulgaris str. Hildenborough 2795231 YP_011489.1 CDS DVU2276 NC_002937.3 2365527 2366273 R identified by match to protein family HMM PF01925; hypothetical protein complement(2365527..2366273) Desulfovibrio vulgaris str. Hildenborough 2795232 YP_011490.1 CDS DVU2277 NC_002937.3 2366254 2366865 R hypothetical protein complement(2366254..2366865) Desulfovibrio vulgaris str. Hildenborough 2795233 YP_011491.1 CDS DVU2278 NC_002937.3 2366929 2367780 R identified by match to protein family HMM PF00892; hypothetical protein complement(2366929..2367780) Desulfovibrio vulgaris str. Hildenborough 2795234 YP_011492.1 CDS DVU2279 NC_002937.3 2367925 2368089 R hypothetical protein complement(2367925..2368089) Desulfovibrio vulgaris str. Hildenborough 2795235 YP_011493.1 CDS DVU2280 NC_002937.3 2368269 2369777 D identified by match to protein family HMM PF00324; amino acid permease 2368269..2369777 Desulfovibrio vulgaris str. Hildenborough 2795434 YP_011494.1 CDS DVU2281 NC_002937.3 2369933 2372134 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator complement(2369933..2372134) Desulfovibrio vulgaris str. Hildenborough 2795435 YP_011495.1 CDS DVU2282 NC_002937.3 2372404 2373954 D hypothetical protein 2372404..2373954 Desulfovibrio vulgaris str. Hildenborough 2795436 YP_011496.1 CDS DVU2283 NC_002937.3 2374131 2374232 D hypothetical protein 2374131..2374232 Desulfovibrio vulgaris str. Hildenborough 2795437 YP_011497.1 CDS DVU2284 NC_002937.3 2374291 2374803 D hypothetical protein 2374291..2374803 Desulfovibrio vulgaris str. Hildenborough 2795438 YP_011498.1 CDS DVU2285 NC_002937.3 2375226 2376746 R identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease complement(2375226..2376746) Desulfovibrio vulgaris str. Hildenborough 2795439 YP_011499.1 CDS DVU2286 NC_002937.3 2377289 2381050 D identified by similarity to GP:1515466; match to protein family HMM PF00361; hydrogenase subunit CooM 2377289..2381050 Desulfovibrio vulgaris str. Hildenborough 2795440 YP_011500.1 CDS DVU2287 NC_002937.3 2381054 2382019 D selenoprotein; identified by similarity to GP:1515467; match to protein family HMM PF00146; hydrogenase subunit CooK 2381054..2382019 Desulfovibrio vulgaris str. Hildenborough 2795441 YP_011501.1 CDS DVU2288 NC_002937.3 2382032 2382466 D identified by similarity to GP:1515468; match to protein family HMM PF01058; hydrogenase subunit CooL 2382032..2382466 Desulfovibrio vulgaris str. Hildenborough 2795442 YP_011502.1 CDS DVU2289 NC_002937.3 2382468 2383103 D identified by match to protein family HMM PF00037; hydrogenase subunit CooX 2382468..2383103 Desulfovibrio vulgaris str. Hildenborough 2795443 YP_011503.2 CDS DVU2290 NC_002937.3 2383100 2383645 D identified by similarity to GP:1515470; match to protein family HMM PF00329; hydrogenase subunit CooU 2383100..2383645 Desulfovibrio vulgaris str. Hildenborough 2795444 YP_011504.1 CDS DVU2291 NC_002937.3 2383642 2384742 D identified by similarity to SP:P31895; match to protein family HMM PF00346; carbon monoxide-induced hydrogenase CooH 2383642..2384742 Desulfovibrio vulgaris str. Hildenborough 2795445 YP_011505.1 CDS hypA NC_002937.3 2384751 2385113 D identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA 2384751..2385113 Desulfovibrio vulgaris str. Hildenborough 2795446 YP_011506.1 CDS cooF NC_002937.3 2385110 2385631 D identified by similarity to SP:P31894; match to protein family HMM PF00037; iron-sulfur protein CooF 2385110..2385631 Desulfovibrio vulgaris str. Hildenborough 2795447 YP_011507.1 CDS DVU2294 NC_002937.3 2385828 2386907 R identified by match to protein family HMM PF02388; femAB family protein complement(2385828..2386907) Desulfovibrio vulgaris str. Hildenborough 2795448 YP_011508.1 CDS DVU2295 NC_002937.3 2387414 2389744 R identified by similarity to OMNI:VC1289; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(2387414..2389744) Desulfovibrio vulgaris str. Hildenborough 2795449 YP_011509.1 CDS mtgA NC_002937.3 2390172 2390918 D identified by similarity to SP:Q51005; match to protein family HMM PF00912; match to protein family HMM TIGR02070; monofunctional biosynthetic peptidoglycan transglycosylase 2390172..2390918 Desulfovibrio vulgaris str. Hildenborough 2795342 YP_011510.1 CDS DVU2297 NC_002937.3 2391131 2391988 R identified by match to protein family HMM PF04069; glycine betaine/L-proline ABC transporter substrate-binding protein complement(2391131..2391988) Desulfovibrio vulgaris str. Hildenborough 2795343 YP_011511.1 CDS DVU2298 NC_002937.3 2392146 2392997 R identified by similarity to SP:P46921; match to protein family HMM PF00528; glycine/betaine/L-proline ABC transporter permease complement(2392146..2392997) Desulfovibrio vulgaris str. Hildenborough 2795344 YP_011512.1 CDS DVU2299 NC_002937.3 2392994 2394187 R identified by similarity to SP:P17328; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/L-proline ABC transporter ATP-binding protein complement(2392994..2394187) Desulfovibrio vulgaris str. Hildenborough 2795345 YP_011513.1 CDS DVU2300 NC_002937.3 2394323 2394478 R hypothetical protein complement(2394323..2394478) Desulfovibrio vulgaris str. Hildenborough 2795346 YP_011514.1 CDS DVU2301 NC_002937.3 2394492 2394629 R lipoprotein complement(2394492..2394629) Desulfovibrio vulgaris str. Hildenborough 2795347 YP_011515.1 CDS DVU2302 NC_002937.3 2394641 2396659 D identified by similarity to OMNI:NTL01MM0929; match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254; glutathione-regulated potassium-efflux system protein KefB 2394641..2396659 Desulfovibrio vulgaris str. Hildenborough 2795348 YP_011516.1 CDS DVU2303 NC_002937.3 2396735 2398162 D hypothetical protein 2396735..2398162 Desulfovibrio vulgaris str. Hildenborough 2795349 YP_011517.1 CDS DVU2304 NC_002937.3 2398174 2398410 D hypothetical protein 2398174..2398410 Desulfovibrio vulgaris str. Hildenborough 2795350 YP_011518.1 CDS DVU2305 NC_002937.3 2398490 2399119 D identified by similarity to OMNI:NTL01RS1312; match to protein family HMM PF01865; hypothetical protein 2398490..2399119 Desulfovibrio vulgaris str. Hildenborough 2795351 YP_011519.1 CDS DVU2306 NC_002937.3 2399112 2400122 D identified by similarity to GP:15026158; match to protein family HMM PF01384; phosphate transporter family protein 2399112..2400122 Desulfovibrio vulgaris str. Hildenborough 2795352 YP_011520.1 CDS DVU2307 NC_002937.3 2400220 2400441 R identified by match to protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein complement(2400220..2400441) Desulfovibrio vulgaris str. Hildenborough 2795353 YP_011521.1 CDS DVU2308 NC_002937.3 2400453 2400944 R identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein complement(2400453..2400944) Desulfovibrio vulgaris str. Hildenborough 2795354 YP_011522.1 CDS DVU2309 NC_002937.3 2401206 2403293 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 2401206..2403293 Desulfovibrio vulgaris str. Hildenborough 2795355 YP_011523.1 CDS DVU2310 NC_002937.3 2403522 2404268 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 2403522..2404268 Desulfovibrio vulgaris str. Hildenborough 2795270 YP_003858620.1 CDS DVU4009 NC_002937.3 2404636 2405895 D hypothetical protein 2404636..2405895 Desulfovibrio vulgaris str. Hildenborough 9714845 YP_011525.1 CDS DVU2312 NC_002937.3 2405929 2406396 D hypothetical protein 2405929..2406396 Desulfovibrio vulgaris str. Hildenborough 2795272 YP_011526.1 CDS pgl NC_002937.3 2406614 2407363 D identified by match to protein family HMM PF01182; match to protein family HMM TIGR01198; 6-phosphogluconolactonase 2406614..2407363 Desulfovibrio vulgaris str. Hildenborough 2795273 YP_011527.1 CDS DVU2314 NC_002937.3 2407508 2407648 D hypothetical protein 2407508..2407648 Desulfovibrio vulgaris str. Hildenborough 2795274 YP_011528.1 CDS DVU2315 NC_002937.3 2407645 2408373 R identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein complement(2407645..2408373) Desulfovibrio vulgaris str. Hildenborough 2795275 YP_011529.1 CDS topB NC_002937.3 2408456 2411044 D identified by similarity to SP:P14294; match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056; DNA topoisomerase III 2408456..2411044 Desulfovibrio vulgaris str. Hildenborough 2795276 YP_011530.1 CDS DVU2317 NC_002937.3 2411334 2413103 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 2411334..2413103 Desulfovibrio vulgaris str. Hildenborough 2795277 YP_011531.1 CDS DVU2318 NC_002937.3 2413715 2414209 D identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin 2413715..2414209 Desulfovibrio vulgaris str. Hildenborough 2795278 YP_011532.1 CDS DVU2319 NC_002937.3 2414335 2414991 D identified by match to protein family HMM PF00486; transcriptional regulator domain-containing protein 2414335..2414991 Desulfovibrio vulgaris str. Hildenborough 2795279 YP_011533.1 CDS DVU2320 NC_002937.3 2415017 2416855 D identified by match to protein family HMM PF01977; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2415017..2416855 Desulfovibrio vulgaris str. Hildenborough 2795280 YP_011534.1 CDS DVU2321 NC_002937.3 2417136 2417333 R hypothetical protein complement(2417136..2417333) Desulfovibrio vulgaris str. Hildenborough 2795281 YP_011535.1 CDS DVU2322 NC_002937.3 2417314 2418753 D identified by match to protein family HMM PF01704; UTP--glucose-1-phosphate uridylyltransferase 2417314..2418753 Desulfovibrio vulgaris str. Hildenborough 2795282 YP_011536.1 CDS DVU2323 NC_002937.3 2419003 2419425 D hypothetical protein 2419003..2419425 Desulfovibrio vulgaris str. Hildenborough 2795283 YP_011537.1 CDS DVU2324 NC_002937.3 2419638 2422355 R identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(2419638..2422355) Desulfovibrio vulgaris str. Hildenborough 2795284 YP_011538.1 CDS merP NC_002937.3 2422628 2422825 D identified by similarity to SP:P04131; match to protein family HMM PF00403; mercuric transport periplasmic protein 2422628..2422825 Desulfovibrio vulgaris str. Hildenborough 2795285 YP_011539.1 CDS DVU2326 NC_002937.3 2422922 2423824 R identified by similarity to GP:3978519; hypothetical protein complement(2422922..2423824) Desulfovibrio vulgaris str. Hildenborough 2793799 YP_003858621.1 CDS DVU4016 NC_002937.3 2423824 2424249 R hypothetical protein complement(2423824..2424249) Desulfovibrio vulgaris str. Hildenborough 9714844 YP_011541.1 CDS DVU2328 NC_002937.3 2424814 2425167 D identified by match to protein family HMM PF01155; hydrogenase nickel incorporation protein HypA 2424814..2425167 Desulfovibrio vulgaris str. Hildenborough 2793801 YP_011542.1 CDS hypB NC_002937.3 2425178 2425852 D identified by similarity to SP:P24190; match to protein family HMM PF01495; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 2425178..2425852 Desulfovibrio vulgaris str. Hildenborough 2793802 YP_011543.1 CDS DVU2330 NC_002937.3 2425849 2426730 D identified by similarity to SP:P53383; MRP family protein 2425849..2426730 Desulfovibrio vulgaris str. Hildenborough 2793803 YP_011544.1 CDS DVU2331 NC_002937.3 2427033 2428262 D identified by match to protein family HMM PF01713; Smr family protein 2427033..2428262 Desulfovibrio vulgaris str. Hildenborough 2793804 YP_011545.1 CDS proC NC_002937.3 2428593 2429390 R identified by similarity to SP:P00373; match to protein family HMM PF01089; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase complement(2428593..2429390) Desulfovibrio vulgaris str. Hildenborough 2793805 YP_011546.1 CDS ndk NC_002937.3 2429390 2429809 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2429390..2429809) Desulfovibrio vulgaris str. Hildenborough 2793806 YP_011547.1 CDS DVU2334 NC_002937.3 2429794 2430078 D hypothetical protein 2429794..2430078 Desulfovibrio vulgaris str. Hildenborough 2793807 YP_011548.1 CDS DVU2335 NC_002937.3 2430361 2431911 R identified by similarity to SP:P37691; match to protein family HMM PF04748; hypothetical protein complement(2430361..2431911) Desulfovibrio vulgaris str. Hildenborough 2793808 YP_011549.1 CDS DVU2336 NC_002937.3 2431992 2433278 R identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease complement(2431992..2433278) Desulfovibrio vulgaris str. Hildenborough 2793809 YP_011550.1 CDS DVU2337 NC_002937.3 2433311 2434462 R identified by match to protein family HMM PF01551; M24/M37 family peptidase complement(2433311..2434462) Desulfovibrio vulgaris str. Hildenborough 2793810 YP_011551.1 CDS DVU2338 NC_002937.3 2434492 2435172 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; HhH-GPD family DNA repair protein complement(2434492..2435172) Desulfovibrio vulgaris str. Hildenborough 2793811 YP_011552.1 CDS DVU2339 NC_002937.3 2435422 2436273 R 50S ribosomal protein L11 methyltransferase complement(2435422..2436273) Desulfovibrio vulgaris str. Hildenborough 2793812 YP_011553.1 CDS DVU2340 NC_002937.3 2436277 2436969 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease complement(2436277..2436969) Desulfovibrio vulgaris str. Hildenborough 2795514 YP_011554.1 CDS DVU2341 NC_002937.3 2436980 2437681 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(2436980..2437681) Desulfovibrio vulgaris str. Hildenborough 2795515 YP_011555.1 CDS DVU2342 NC_002937.3 2437743 2438555 R identified by match to protein family HMM PF00497; amino acid ABC transporter periplasmic amino acid-binding protein complement(2437743..2438555) Desulfovibrio vulgaris str. Hildenborough 2795516 YP_011556.1 CDS DVU2343 NC_002937.3 2438613 2439341 R identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(2438613..2439341) Desulfovibrio vulgaris str. Hildenborough 2795517 YP_011557.1 CDS DVU2344 NC_002937.3 2439629 2439727 D hypothetical protein 2439629..2439727 Desulfovibrio vulgaris str. Hildenborough 2795518 YP_011558.1 CDS DVU2345 NC_002937.3 2439751 2440071 R hypothetical protein complement(2439751..2440071) Desulfovibrio vulgaris str. Hildenborough 2795519 YP_011559.1 CDS DVU2346 NC_002937.3 2440093 2440350 D hypothetical protein 2440093..2440350 Desulfovibrio vulgaris str. Hildenborough 2795520 YP_011560.1 CDS argD NC_002937.3 2440531 2441730 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(2440531..2441730) Desulfovibrio vulgaris str. Hildenborough 2795521 YP_011561.1 CDS dut NC_002937.3 2441935 2442396 R identified by similarity to SP:P06968; match to protein family HMM PF00692; match to protein family HMM TIGR00576; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(2441935..2442396) Desulfovibrio vulgaris str. Hildenborough 2795522 YP_011562.1 CDS DVU2349 NC_002937.3 2442630 2445197 D identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094; carbohydrate phosphorylase 2442630..2445197 Desulfovibrio vulgaris str. Hildenborough 2795523 YP_011563.1 CDS gid NC_002937.3 2445526 2446950 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 2445526..2446950 Desulfovibrio vulgaris str. Hildenborough 2795524 YP_011564.1 CDS DVU2351 NC_002937.3 2447023 2447391 D hypothetical protein 2447023..2447391 Desulfovibrio vulgaris str. Hildenborough 2795525 YP_011565.1 CDS DVU2352 NC_002937.3 2447492 2449129 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(2447492..2449129) Desulfovibrio vulgaris str. Hildenborough 2795526 YP_011566.1 CDS DVU2353 NC_002937.3 2449172 2450980 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2449172..2450980 Desulfovibrio vulgaris str. Hildenborough 2795527 YP_011567.1 CDS DVU2354 NC_002937.3 2450977 2452224 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2450977..2452224 Desulfovibrio vulgaris str. Hildenborough 2795528 YP_011568.1 CDS trmH NC_002937.3 2452485 2453075 R identified by similarity to SP:P19396; similarity to GP:11079208; match to protein family HMM PF00588; tRNA (guanosine-2'-O-)-methyltransferase complement(2452485..2453075) Desulfovibrio vulgaris str. Hildenborough 2796514 YP_011569.1 CDS DVU2356 NC_002937.3 2453277 2454704 D hypothetical protein 2453277..2454704 Desulfovibrio vulgaris str. Hildenborough 2796515 YP_011570.2 CDS DVU2357 NC_002937.3 2455000 2456109 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(2455000..2456109) Desulfovibrio vulgaris str. Hildenborough 2796516 YP_011571.1 CDS DVU2358 NC_002937.3 2456141 2456233 R hypothetical protein complement(2456141..2456233) Desulfovibrio vulgaris str. Hildenborough 2796517 YP_011572.1 CDS DVU2359 NC_002937.3 2456656 2458311 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 2456656..2458311 Desulfovibrio vulgaris str. Hildenborough 2796518 YP_011573.1 CDS DVU2360 NC_002937.3 2458415 2459221 D identified by similarity to SP:P49852; match to protein family HMM PF00175; match to protein family HMM PF00970; FAD/NAD-binding family oxidoreductase 2458415..2459221 Desulfovibrio vulgaris str. Hildenborough 2796519 YP_011574.1 CDS DVU2361 NC_002937.3 2459206 2459352 R hypothetical protein complement(2459206..2459352) Desulfovibrio vulgaris str. Hildenborough 2796520 YP_011575.1 CDS thiE NC_002937.3 2459445 2460104 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(2459445..2460104) Desulfovibrio vulgaris str. Hildenborough 2796521 YP_011576.1 CDS thiM NC_002937.3 2460101 2460904 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(2460101..2460904) Desulfovibrio vulgaris str. Hildenborough 2796522 YP_011577.1 CDS DVU2364 NC_002937.3 2461234 2462400 R identified by match to protein family HMM PF00155; class I/II aminotransferase complement(2461234..2462400) Desulfovibrio vulgaris str. Hildenborough 2796523 YP_011578.1 CDS DVU2365 NC_002937.3 2462435 2463259 R identified by similarity to OMNI:CC1910; hypothetical protein complement(2462435..2463259) Desulfovibrio vulgaris str. Hildenborough 2796524 YP_011579.1 CDS DVU2366 NC_002937.3 2463287 2463415 D hypothetical protein 2463287..2463415 Desulfovibrio vulgaris str. Hildenborough 2796525 YP_011580.1 CDS lpxA NC_002937.3 2463471 2464274 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(2463471..2464274) Desulfovibrio vulgaris str. Hildenborough 2796526 YP_011581.1 CDS fabZ NC_002937.3 2464274 2464738 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2464274..2464738) Desulfovibrio vulgaris str. Hildenborough 2796527 YP_011582.1 CDS lpxD NC_002937.3 2464738 2465772 R identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase complement(2464738..2465772) Desulfovibrio vulgaris str. Hildenborough 2796528 YP_011583.1 CDS DVU2370 NC_002937.3 2465783 2466310 R identified by similarity to SP:P31519; match to protein family HMM PF03938; outer membrane protein OmpH complement(2465783..2466310) Desulfovibrio vulgaris str. Hildenborough 2796103 YP_011584.1 CDS DVU2371 NC_002937.3 2466461 2468092 R identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(2466461..2468092) Desulfovibrio vulgaris str. Hildenborough 2796104 YP_011585.1 CDS DVU2372 NC_002937.3 2468097 2468462 R hypothetical protein complement(2468097..2468462) Desulfovibrio vulgaris str. Hildenborough 2796105 YP_011586.2 CDS DVU2373 NC_002937.3 2468564 2471185 R identified by match to protein family HMM PF01103; OMP85 family outer membrane protein complement(2468564..2471185) Desulfovibrio vulgaris str. Hildenborough 2796106 YP_011587.1 CDS lolD NC_002937.3 2471235 2471936 R identified by similarity to SP:P75957; match to protein family HMM PF00005; lipoprotein releasing system, ATP-binding protein complement(2471235..2471936) Desulfovibrio vulgaris str. Hildenborough 2796107 YP_011588.1 CDS DVU2375 NC_002937.3 2471933 2473168 R identified by similarity to SP:P75956; match to protein family HMM PF02687; lipoprotein releasing system, permease complement(2471933..2473168) Desulfovibrio vulgaris str. Hildenborough 2796108 YP_011589.2 CDS lysS NC_002937.3 2473176 2474720 R identified by similarity to SP:P41255; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; lysyl-tRNA synthetase complement(2473176..2474720) Desulfovibrio vulgaris str. Hildenborough 2796109 YP_011590.1 CDS DVU2377 NC_002937.3 2475373 2475504 R hypothetical protein complement(2475373..2475504) Desulfovibrio vulgaris str. Hildenborough 2796111 YP_011591.1 CDS DVU2378 NC_002937.3 2475614 2476306 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 2475614..2476306 Desulfovibrio vulgaris str. Hildenborough 2796112 YP_011592.1 CDS DVU2379 NC_002937.3 2476431 2479448 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 2476431..2479448 Desulfovibrio vulgaris str. Hildenborough 2796113 YP_011593.1 CDS DVU2380 NC_002937.3 2479445 2480350 D identified by similarity to SP:P72335; match to protein family HMM PF00005; ABC transporter ATP-binding protein 2479445..2480350 Desulfovibrio vulgaris str. Hildenborough 2796114 YP_011594.1 CDS DVU2381 NC_002937.3 2480368 2481036 D identified by similarity to GP:29340941; hypothetical protein 2480368..2481036 Desulfovibrio vulgaris str. Hildenborough 2796115 YP_011595.1 CDS DVU2382 NC_002937.3 2481033 2482397 D identified by similarity to GP:29340940; hypothetical protein 2481033..2482397 Desulfovibrio vulgaris str. Hildenborough 2796116 YP_011596.1 CDS DVU2383 NC_002937.3 2482430 2485057 D identified by match to protein family HMM PF00593; TonB dependent receptor domain-containing protein 2482430..2485057 Desulfovibrio vulgaris str. Hildenborough 2796117 YP_011597.1 CDS DVU2384 NC_002937.3 2485110 2487029 D identified by match to protein family HMM PF00496; ABC transporter periplasmic substrate-binding protein 2485110..2487029 Desulfovibrio vulgaris str. Hildenborough 2795286 YP_011598.1 CDS DVU2385 NC_002937.3 2487029 2488150 D identified by match to protein family HMM PF00528; ABC transporter permease 2487029..2488150 Desulfovibrio vulgaris str. Hildenborough 2795287 YP_011599.1 CDS DVU2386 NC_002937.3 2488147 2489178 D identified by match to protein family HMM PF00528; ABC transporter permease 2488147..2489178 Desulfovibrio vulgaris str. Hildenborough 2795288 YP_011600.1 CDS DVU2387 NC_002937.3 2489184 2490962 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2489184..2490962 Desulfovibrio vulgaris str. Hildenborough 2795289 YP_011601.1 CDS tolQ-1 NC_002937.3 2490966 2491919 D identified by similarity to SP:P05828; match to protein family HMM PF01618; tolQ protein 2490966..2491919 Desulfovibrio vulgaris str. Hildenborough 2795290 YP_011602.1 CDS DVU2389 NC_002937.3 2491903 2492316 D identified by match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 2491903..2492316 Desulfovibrio vulgaris str. Hildenborough 2795291 YP_011603.1 CDS DVU2390 NC_002937.3 2492313 2493221 D identified by similarity to GP:19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB domain-containing protein 2492313..2493221 Desulfovibrio vulgaris str. Hildenborough 2795292 YP_011604.1 CDS DVU2391 NC_002937.3 2493730 2493873 R hypothetical protein complement(2493730..2493873) Desulfovibrio vulgaris str. Hildenborough 2795294 YP_011605.1 CDS DVU2392 NC_002937.3 2494058 2494510 D CesT family type III secretion chaperone 2494058..2494510 Desulfovibrio vulgaris str. Hildenborough 2795295 YP_003858622.1 CDS DVU4010 NC_002937.3 2494623 2496719 D hypothetical protein 2494623..2496719 Desulfovibrio vulgaris str. Hildenborough 9714843 YP_011607.1 CDS DVU2394 NC_002937.3 2496966 2498357 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator complement(2496966..2498357) Desulfovibrio vulgaris str. Hildenborough 2795297 YP_011608.2 CDS DVU2395 NC_002937.3 2498363 2499619 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2498363..2499619) Desulfovibrio vulgaris str. Hildenborough 2795298 YP_011609.1 CDS DVU2396 NC_002937.3 2499621 2500763 R identified by similarity to SP:P31005; match to protein family HMM PF00465; iron-containing alcohol dehydrogenase complement(2499621..2500763) Desulfovibrio vulgaris str. Hildenborough 2795299 YP_011610.1 CDS DVU2397 NC_002937.3 2501252 2501995 R hypothetical protein complement(2501252..2501995) Desulfovibrio vulgaris str. Hildenborough 2794482 YP_011611.1 CDS DVU2398 NC_002937.3 2502202 2502693 R identified by similarity to OMNI:TM0095; hypothetical protein complement(2502202..2502693) Desulfovibrio vulgaris str. Hildenborough 2794483 YP_011612.2 CDS DVU2399 NC_002937.3 2502951 2503838 R identified by similarity to GP:21327886; match to protein family HMM PF00175; match to protein family HMM PF00970; hydrogenase complement(2502951..2503838) Desulfovibrio vulgaris str. Hildenborough 2794484 YP_011613.1 CDS DVU2400 NC_002937.3 2503831 2504913 R identified by similarity to GP:21327885; hydrogenase complement(2503831..2504913) Desulfovibrio vulgaris str. Hildenborough 2794485 YP_011614.1 CDS DVU2401 NC_002937.3 2504910 2506394 R identified by match to protein family HMM PF00037; match to protein family HMM PF02662; hydrogenase, iron-sulfur cluster-binding subunit complement(2504910..2506394) Desulfovibrio vulgaris str. Hildenborough 2794486 YP_011615.1 CDS hdrA NC_002937.3 2506382 2508340 R identified by similarity to GP:12642418; match to protein family HMM PF00037; heterodisulfide reductase subunit A complement(2506382..2508340) Desulfovibrio vulgaris str. Hildenborough 2794487 YP_011616.1 CDS hdrB NC_002937.3 2508337 2509341 R identified by similarity to GP:3378542; match to protein family HMM PF02754; heterodisulfide reductase subunit B complement(2508337..2509341) Desulfovibrio vulgaris str. Hildenborough 2794488 YP_011617.1 CDS hdrC NC_002937.3 2509338 2509898 R identified by similarity to GP:12642421; heterodisulfide reductase subunit C complement(2509338..2509898) Desulfovibrio vulgaris str. Hildenborough 2794489 YP_011618.1 CDS DVU2405 NC_002937.3 2510126 2511307 R identified by similarity to GP:2393887; match to protein family HMM PF00465; iron-containing alcohol dehydrogenase complement(2510126..2511307) Desulfovibrio vulgaris str. Hildenborough 2794490 YP_011619.1 CDS DVU2406 NC_002937.3 2511342 2511548 R hypothetical protein complement(2511342..2511548) Desulfovibrio vulgaris str. Hildenborough 2794491 YP_011620.1 CDS DVU2407 NC_002937.3 2511892 2512392 R identified by similarity to OMNI:NTL01PH01257; hypothetical protein complement(2511892..2512392) Desulfovibrio vulgaris str. Hildenborough 2794492 YP_011621.1 CDS DVU2408 NC_002937.3 2512382 2512660 R hypothetical protein complement(2512382..2512660) Desulfovibrio vulgaris str. Hildenborough 2794493 YP_011622.1 CDS DVU2409 NC_002937.3 2512747 2513559 R identified by match to protein family HMM PF00497; solute-binding family 3 protein complement(2512747..2513559) Desulfovibrio vulgaris str. Hildenborough 2794494 YP_011623.2 CDS sodB NC_002937.3 2513845 2514531 D identified by similarity to GP:2654175; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 2513845..2514531 Desulfovibrio vulgaris str. Hildenborough 2794495 YP_011624.1 CDS DVU2411 NC_002937.3 2514715 2515131 D identified by match to protein family HMM PF00036; EF hand domain-containing protein 2514715..2515131 Desulfovibrio vulgaris str. Hildenborough 2794496 YP_011625.1 CDS DVU2412 NC_002937.3 2515473 2518580 R identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(2515473..2518580) Desulfovibrio vulgaris str. Hildenborough 2794353 YP_011626.1 CDS DVU2413 NC_002937.3 2518594 2520636 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2518594..2520636 Desulfovibrio vulgaris str. Hildenborough 2794354 YP_011627.1 CDS DVU2414 NC_002937.3 2520831 2522591 R hypothetical protein complement(2520831..2522591) Desulfovibrio vulgaris str. Hildenborough 2794355 YP_011628.1 CDS DVU2415 NC_002937.3 2522644 2524371 D hypothetical protein 2522644..2524371 Desulfovibrio vulgaris str. Hildenborough 2794356 YP_011629.1 CDS DVU2416 NC_002937.3 2524701 2525183 D identified by similarity to GP:22294464; match to protein family HMM PF04543; hypothetical protein 2524701..2525183 Desulfovibrio vulgaris str. Hildenborough 2794357 YP_011630.1 CDS DVU2417 NC_002937.3 2525180 2525401 D SlyX protein 2525180..2525401 Desulfovibrio vulgaris str. Hildenborough 2794358 YP_011631.1 CDS DVU2418 NC_002937.3 2525837 2526259 R identified by match to protein family HMM PF04892; vanZ-like family protein complement(2525837..2526259) Desulfovibrio vulgaris str. Hildenborough 2794359 YP_011632.1 CDS DVU2419 NC_002937.3 2526617 2527171 R identified by similarity to GP:13752542; hypothetical protein complement(2526617..2527171) Desulfovibrio vulgaris str. Hildenborough 2794360 YP_011633.1 CDS DVU2420 NC_002937.3 2527461 2527790 R identified by similarity to OMNI:NTL02ML3469; hypothetical protein complement(2527461..2527790) Desulfovibrio vulgaris str. Hildenborough 2794361 YP_011634.1 CDS DVU2421 NC_002937.3 2527924 2528121 R identified by match to protein family HMM PF01361; 4-oxalocrotonate tautomerase complement(2527924..2528121) Desulfovibrio vulgaris str. Hildenborough 2794362 YP_011635.1 CDS DVU2422 NC_002937.3 2528124 2528633 R identified by match to protein family HMM PF00881; nitroreductase complement(2528124..2528633) Desulfovibrio vulgaris str. Hildenborough 2794363 YP_011636.1 CDS DVU2423 NC_002937.3 2528735 2529214 D identified by match to protein family HMM PF01638; transcriptional regulator 2528735..2529214 Desulfovibrio vulgaris str. Hildenborough 2794364 YP_011637.1 CDS DVU2424 NC_002937.3 2529640 2530554 R identified by similarity to OMNI:NTL01ATA0877; match to protein family HMM PF00892; hypothetical protein complement(2529640..2530554) Desulfovibrio vulgaris str. Hildenborough 2794365 YP_011638.1 CDS rarD NC_002937.3 2530647 2531534 R identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688; rarD protein complement(2530647..2531534) Desulfovibrio vulgaris str. Hildenborough 2794366 YP_011639.1 CDS DVU2426 NC_002937.3 2531512 2531625 D hypothetical protein 2531512..2531625 Desulfovibrio vulgaris str. Hildenborough 2794367 YP_011640.1 CDS DVU2427 NC_002937.3 2531790 2532431 R hypothetical protein complement(2531790..2532431) Desulfovibrio vulgaris str. Hildenborough 2794368 YP_011641.1 CDS DVU2428 NC_002937.3 2532467 2532925 R lipoprotein complement(2532467..2532925) Desulfovibrio vulgaris str. Hildenborough 2795419 YP_011642.1 CDS DVU2429 NC_002937.3 2533152 2533262 D hypothetical protein 2533152..2533262 Desulfovibrio vulgaris str. Hildenborough 2795420 YP_011643.1 CDS DVU2430 NC_002937.3 2533259 2533525 R identified by match to protein family HMM PF00076; RNA-binding protein complement(2533259..2533525) Desulfovibrio vulgaris str. Hildenborough 2795421 YP_011644.1 CDS DVU2431 NC_002937.3 2533614 2533763 D hypothetical protein 2533614..2533763 Desulfovibrio vulgaris str. Hildenborough 2795422 YP_011645.1 CDS DVU2432 NC_002937.3 2533787 2538028 D identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 2533787..2538028 Desulfovibrio vulgaris str. Hildenborough 2795423 YP_011646.1 CDS DVU2433 NC_002937.3 2538257 2538379 R hypothetical protein complement(2538257..2538379) Desulfovibrio vulgaris str. Hildenborough 2795424 YP_011647.1 CDS DVU2434 NC_002937.3 2538367 2538774 R hypothetical protein complement(2538367..2538774) Desulfovibrio vulgaris str. Hildenborough 2795425 YP_011648.1 CDS DVU2435 NC_002937.3 2539054 2540088 D identified by similarity to SP:P27841; match to protein family HMM PF01544; CorA family protein 2539054..2540088 Desulfovibrio vulgaris str. Hildenborough 2795426 YP_011649.1 CDS DVU2436 NC_002937.3 2540394 2541026 D identified by similarity to OMNI:AF1432; hypothetical protein 2540394..2541026 Desulfovibrio vulgaris str. Hildenborough 2795427 YP_011650.1 CDS DVU2437 NC_002937.3 2541104 2542324 R identified by similarity to OMNI:NTL01TE1382; match to protein family HMM PF02687; ABC transporter permease complement(2541104..2542324) Desulfovibrio vulgaris str. Hildenborough 2795428 YP_011651.1 CDS DVU2439 NC_002937.3 2544684 2545919 R identified by similarity to SP:P75830; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(2544684..2545919) Desulfovibrio vulgaris str. Hildenborough 2795430 YP_011652.1 CDS DVU2440 NC_002937.3 2546391 2547314 R hypothetical protein complement(2546391..2547314) Desulfovibrio vulgaris str. Hildenborough 2795431 YP_011653.1 CDS DVU2441 NC_002937.3 2547504 2547914 D identified by match to protein family HMM PF00011; HSP20 family protein 2547504..2547914 Desulfovibrio vulgaris str. Hildenborough 2795432 YP_011654.1 CDS DVU2442 NC_002937.3 2547975 2548328 D identified by match to protein family HMM PF00011; HSP20 family protein 2547975..2548328 Desulfovibrio vulgaris str. Hildenborough 2795433 YP_011655.1 CDS DVU2443 NC_002937.3 2548554 2549180 R identified by similarity to OMNI:NTL01PM1881; hypothetical protein complement(2548554..2549180) Desulfovibrio vulgaris str. Hildenborough 2796620 YP_011656.1 CDS DVU2444 NC_002937.3 2549361 2550254 R identified by similarity to GP:1929918; match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin complement(2549361..2550254) Desulfovibrio vulgaris str. Hildenborough 2796621 YP_011657.1 CDS DVU2445 NC_002937.3 2550227 2550352 R hypothetical protein complement(2550227..2550352) Desulfovibrio vulgaris str. Hildenborough 2796622 YP_011658.1 CDS panB NC_002937.3 2550513 2551436 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2550513..2551436 Desulfovibrio vulgaris str. Hildenborough 2796623 YP_011659.1 CDS DVU2447 NC_002937.3 2551555 2552130 R hypothetical protein complement(2551555..2552130) Desulfovibrio vulgaris str. Hildenborough 2796624 YP_011660.1 CDS panC NC_002937.3 2552303 2553154 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2552303..2553154 Desulfovibrio vulgaris str. Hildenborough 2796625 YP_011661.1 CDS metK NC_002937.3 2553206 2554381 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2553206..2554381 Desulfovibrio vulgaris str. Hildenborough 2796626 YP_011662.1 CDS tatA NC_002937.3 2554552 2554758 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase A 2554552..2554758 Desulfovibrio vulgaris str. Hildenborough 2796627 YP_011663.1 CDS DVU2451 NC_002937.3 2555055 2556767 R identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease complement(2555055..2556767) Desulfovibrio vulgaris str. Hildenborough 2796628 YP_011664.1 CDS DVU2452 NC_002937.3 2556895 2557044 D hypothetical protein 2556895..2557044 Desulfovibrio vulgaris str. Hildenborough 2796629 YP_011665.1 CDS DVU2453 NC_002937.3 2557376 2557474 R hypothetical protein complement(2557376..2557474) Desulfovibrio vulgaris str. Hildenborough 2796630 YP_011666.1 CDS DVU2454 NC_002937.3 2557471 2557740 R hypothetical protein complement(2557471..2557740) Desulfovibrio vulgaris str. Hildenborough 2796631 YP_011667.1 CDS DVU2455 NC_002937.3 2557897 2558847 D identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 2557897..2558847 Desulfovibrio vulgaris str. Hildenborough 2796632 YP_011668.1 CDS DVU2456 NC_002937.3 2564303 2564542 D hypothetical protein 2564303..2564542 Desulfovibrio vulgaris str. Hildenborough 2795320 YP_011669.1 CDS DVU2457 NC_002937.3 2564532 2564744 D hypothetical protein 2564532..2564744 Desulfovibrio vulgaris str. Hildenborough 2795321 YP_011671.2 CDS DVU2459 NC_002937.3 2564868 2565482 D hypothetical protein 2564868..2565482 Desulfovibrio vulgaris str. Hildenborough 2795323 YP_011672.1 CDS DVU2460 NC_002937.3 2565584 2566177 D hypothetical protein 2565584..2566177 Desulfovibrio vulgaris str. Hildenborough 2795324 YP_011673.1 CDS DVU2461 NC_002937.3 2566189 2567208 D identified by similarity to SP:P42062; match to protein family HMM PF00528; oligopeptide ABC transporter permease 2566189..2567208 Desulfovibrio vulgaris str. Hildenborough 2795325 YP_011674.1 CDS DVU2462 NC_002937.3 2567205 2568107 D identified by similarity to SP:P42063; match to protein family HMM PF00528; oligopeptide ABC transporter permease 2567205..2568107 Desulfovibrio vulgaris str. Hildenborough 2795326 YP_011675.1 CDS recN NC_002937.3 2568549 2570168 D identified by similarity to SP:P17894; DNA repair protein RecN 2568549..2570168 Desulfovibrio vulgaris str. Hildenborough 2795327 YP_011676.1 CDS DVU2464 NC_002937.3 2570171 2571754 D hypothetical protein 2570171..2571754 Desulfovibrio vulgaris str. Hildenborough 2795328 YP_011677.1 CDS DVU2465 NC_002937.3 2571741 2571890 R hypothetical protein complement(2571741..2571890) Desulfovibrio vulgaris str. Hildenborough 2795329 YP_011678.1 CDS DVU2466 NC_002937.3 2572078 2572947 D flocculin repeat-containing protein 2572078..2572947 Desulfovibrio vulgaris str. Hildenborough 2795330 YP_011679.1 CDS rnr NC_002937.3 2573308 2575968 R identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R complement(2573308..2575968) Desulfovibrio vulgaris str. Hildenborough 2795649 YP_011680.1 CDS lpxK NC_002937.3 2575998 2577062 R identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682; tetraacyldisaccharide 4'-kinase complement(2575998..2577062) Desulfovibrio vulgaris str. Hildenborough 2795650 YP_011681.1 CDS DVU2469 NC_002937.3 2577128 2577232 D hypothetical protein 2577128..2577232 Desulfovibrio vulgaris str. Hildenborough 2795651 YP_011682.1 CDS DVU2470 NC_002937.3 2577229 2577930 R identified by similarity to SP:P75768; match to protein family HMM PF01027; membrane protein complement(2577229..2577930) Desulfovibrio vulgaris str. Hildenborough 2795652 YP_011683.1 CDS DVU2471 NC_002937.3 2578425 2579723 D selenoprotein; identified by match to protein family HMM PF00037; match to protein family HMM PF02754; oxidoreductase, selenocysteine-containing 2578425..2579723 Desulfovibrio vulgaris str. Hildenborough 2795653 YP_011684.1 CDS DVU2472 NC_002937.3 2580029 2582368 D identified by similarity to OMNI:NTL01TE2269; match to protein family HMM PF03065; hypothetical protein 2580029..2582368 Desulfovibrio vulgaris str. Hildenborough 2795654 YP_011685.1 CDS DVU2473 NC_002937.3 2582514 2582657 R hypothetical protein complement(2582514..2582657) Desulfovibrio vulgaris str. Hildenborough 2795655 YP_011686.1 CDS DVU2474 NC_002937.3 2582665 2583147 R hypothetical protein complement(2582665..2583147) Desulfovibrio vulgaris str. Hildenborough 2795656 YP_011687.1 CDS DVU2475 NC_002937.3 2583408 2584250 D identified by match to protein family HMM PF00175; ferredoxin-NADP(+) reductase subunit alpha 2583408..2584250 Desulfovibrio vulgaris str. Hildenborough 2795657 YP_011688.1 CDS gltA NC_002937.3 2584243 2585673 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2584243..2585673 Desulfovibrio vulgaris str. Hildenborough 2795658 YP_011689.1 CDS pstS NC_002937.3 2585915 2586727 D identified by similarity to SP:P46338; match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein 2585915..2586727 Desulfovibrio vulgaris str. Hildenborough 2795659 YP_011690.1 CDS pstC NC_002937.3 2586813 2587700 D identified by similarity to SP:P46339; match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 2586813..2587700 Desulfovibrio vulgaris str. Hildenborough 2795660 YP_011691.1 CDS DVU2479 NC_002937.3 2587787 2588716 D identified by similarity to GP:1369911; match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 2587787..2588716 Desulfovibrio vulgaris str. Hildenborough 2795661 YP_011692.1 CDS DVU2480 NC_002937.3 2588902 2589051 D hypothetical protein 2588902..2589051 Desulfovibrio vulgaris str. Hildenborough 2795662 YP_011693.1 CDS DVU2481 NC_002937.3 2589171 2589953 R identified by similarity to SP:P32175; formate dehydrogenase subunit beta complement(2589171..2589953) Desulfovibrio vulgaris str. Hildenborough 2795663 YP_011694.1 CDS fdnG-2 NC_002937.3 2590064 2593075 R selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; formate dehydrogenase subunit alpha complement(2590064..2593075) Desulfovibrio vulgaris str. Hildenborough 2795450 YP_011695.1 CDS DVU2483 NC_002937.3 2593092 2594837 R identified by similarity to SP:P00135; match to protein family HMM PF02085; cytochrome c family protein complement(2593092..2594837) Desulfovibrio vulgaris str. Hildenborough 2795451 YP_011696.1 CDS DVU2484 NC_002937.3 2594864 2596156 R identified by match to protein family HMM PF00034; cytochrome c family protein complement(2594864..2596156) Desulfovibrio vulgaris str. Hildenborough 2795452 YP_011697.1 CDS DVU2485 NC_002937.3 2596160 2597224 R hypothetical protein complement(2596160..2597224) Desulfovibrio vulgaris str. Hildenborough 2795453 YP_011698.1 CDS DVU2486 NC_002937.3 2597619 2598164 R identified by match to protein family HMM PF00583; acetyltransferase complement(2597619..2598164) Desulfovibrio vulgaris str. Hildenborough 2795454 YP_011699.1 CDS DVU2487 NC_002937.3 2598213 2599400 R hypothetical protein complement(2598213..2599400) Desulfovibrio vulgaris str. Hildenborough 2795455 YP_011700.1 CDS DVU2488 NC_002937.3 2599382 2599501 D hypothetical protein 2599382..2599501 Desulfovibrio vulgaris str. Hildenborough 2795456 YP_011701.1 CDS DVU2489 NC_002937.3 2599678 2600436 D hypothetical protein 2599678..2600436 Desulfovibrio vulgaris str. Hildenborough 2795457 YP_011702.1 CDS DVU2490 NC_002937.3 2601007 2601831 D identified by similarity to SP:O34411; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol phosphatase 2601007..2601831 Desulfovibrio vulgaris str. Hildenborough 2795458 YP_011703.1 CDS DVU2491 NC_002937.3 2601837 2603735 D identified by similarity to SP:P31060; match to protein family HMM PF00005; ABC transporter ATP-binding protein 2601837..2603735 Desulfovibrio vulgaris str. Hildenborough 2795459 YP_011704.1 CDS trpF-2 NC_002937.3 2603932 2604747 D identified by match to protein family HMM PF00697; N-(5'-phosphoribosyl)anthranilate isomerase 2603932..2604747 Desulfovibrio vulgaris str. Hildenborough 2795460 YP_011705.1 CDS DVU2493 NC_002937.3 2604855 2606243 D identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 2604855..2606243 Desulfovibrio vulgaris str. Hildenborough 2795461 YP_011706.1 CDS DVU2494 NC_002937.3 2606430 2607290 D identified by match to protein family HMM PF01435; M48 family peptidase 2606430..2607290 Desulfovibrio vulgaris str. Hildenborough 2795462 YP_011707.1 CDS DVU2495 NC_002937.3 2607365 2607898 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase 2607365..2607898 Desulfovibrio vulgaris str. Hildenborough 2795463 YP_011708.1 CDS DVU2496 NC_002937.3 2607928 2608380 D lipoprotein 2607928..2608380 Desulfovibrio vulgaris str. Hildenborough 2795464 YP_011709.1 CDS DVU2497 NC_002937.3 2608616 2609350 R lipoprotein complement(2608616..2609350) Desulfovibrio vulgaris str. Hildenborough 2795465 YP_011710.1 CDS DVU2498 NC_002937.3 2609375 2609668 R hypothetical protein complement(2609375..2609668) Desulfovibrio vulgaris str. Hildenborough 2795466 YP_011711.1 CDS ftsZ NC_002937.3 2609897 2611246 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(2609897..2611246) Desulfovibrio vulgaris str. Hildenborough 2795467 YP_011712.1 CDS ftsA NC_002937.3 2611296 2612522 R identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA complement(2611296..2612522) Desulfovibrio vulgaris str. Hildenborough 2795628 YP_011713.1 CDS DVU2501 NC_002937.3 2612553 2613389 R identified by match to protein family HMM PF03799; cell division protein FtsQ complement(2612553..2613389) Desulfovibrio vulgaris str. Hildenborough 2795629 YP_011714.1 CDS murB NC_002937.3 2613380 2614270 R identified by match to protein family HMM PF02873; match to protein family HMM TIGR00179; UDP-N-acetylenolpyruvoylglucosamine reductase complement(2613380..2614270) Desulfovibrio vulgaris str. Hildenborough 2795630 YP_011715.1 CDS murC NC_002937.3 2614272 2615636 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(2614272..2615636) Desulfovibrio vulgaris str. Hildenborough 2795631 YP_011716.1 CDS murG NC_002937.3 2615647 2616744 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(2615647..2616744) Desulfovibrio vulgaris str. Hildenborough 2795632 YP_011717.1 CDS DVU2505 NC_002937.3 2616748 2617881 R identified by match to protein family HMM PF01098; cell cycle protein FtsW complement(2616748..2617881) Desulfovibrio vulgaris str. Hildenborough 2795633 YP_011718.1 CDS murD NC_002937.3 2617887 2619188 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(2617887..2619188) Desulfovibrio vulgaris str. Hildenborough 2795634 YP_011719.1 CDS mraY NC_002937.3 2619204 2620280 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2619204..2620280) Desulfovibrio vulgaris str. Hildenborough 2795635 YP_011720.1 CDS murF NC_002937.3 2620270 2621706 R identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(2620270..2621706) Desulfovibrio vulgaris str. Hildenborough 2795636 YP_011721.1 CDS murE NC_002937.3 2621697 2623157 R identified by similarity to GP:12007716; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2621697..2623157) Desulfovibrio vulgaris str. Hildenborough 2795637 YP_011722.1 CDS DVU2510 NC_002937.3 2623154 2625226 R identified by similarity to SP:P11882; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein complement(2623154..2625226) Desulfovibrio vulgaris str. Hildenborough 2795638 YP_011723.1 CDS DVU2511 NC_002937.3 2625241 2625528 R hypothetical protein complement(2625241..2625528) Desulfovibrio vulgaris str. Hildenborough 2795639 YP_011724.1 CDS mraW NC_002937.3 2625531 2626502 R identified by similarity to SP:Q97H81; match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(2625531..2626502) Desulfovibrio vulgaris str. Hildenborough 2795640 YP_011725.1 CDS mraZ NC_002937.3 2626516 2626965 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(2626516..2626965) Desulfovibrio vulgaris str. Hildenborough 2795641 YP_011726.1 CDS pyk NC_002937.3 2627119 2628528 D identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 2627119..2628528 Desulfovibrio vulgaris str. Hildenborough 2795604 YP_011727.1 CDS DVU2515 NC_002937.3 2628531 2629586 D identified by match to protein family HMM PF01966; HD domain-containing protein 2628531..2629586 Desulfovibrio vulgaris str. Hildenborough 2795605 YP_011728.1 CDS DVU2516 NC_002937.3 2629806 2630291 R identified by match to protein family HMM PF00571; hypothetical protein complement(2629806..2630291) Desulfovibrio vulgaris str. Hildenborough 2795606 YP_011729.1 CDS DVU2517 NC_002937.3 2630653 2631894 R identified by similarity to OMNI:NTL01HP00646; hypothetical protein complement(2630653..2631894) Desulfovibrio vulgaris str. Hildenborough 2795607 YP_011730.1 CDS rplM NC_002937.3 2632092 2632526 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2632092..2632526 Desulfovibrio vulgaris str. Hildenborough 2795608 YP_011731.1 CDS rpsI NC_002937.3 2632545 2632937 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2632545..2632937 Desulfovibrio vulgaris str. Hildenborough 2795609 YP_011732.1 CDS DVU2520 NC_002937.3 2632934 2633344 R hypothetical protein complement(2632934..2633344) Desulfovibrio vulgaris str. Hildenborough 2795610 YP_011733.1 CDS aroK NC_002937.3 2633489 2634031 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 2633489..2634031 Desulfovibrio vulgaris str. Hildenborough 2795611 YP_011734.1 CDS DVU2522 NC_002937.3 2634024 2634626 D hypothetical protein 2634024..2634626 Desulfovibrio vulgaris str. Hildenborough 2795612 YP_011735.1 CDS DVU2523 NC_002937.3 2634656 2635132 D lipoprotein 2634656..2635132 Desulfovibrio vulgaris str. Hildenborough 2795613 YP_011736.1 CDS DVU2524 NC_002937.3 2635568 2636065 D identified by match to protein family HMM PF02085; cytochrome c3 2635568..2636065 Desulfovibrio vulgaris str. Hildenborough 2795614 YP_011737.1 CDS hynB-2 NC_002937.3 2636122 2637036 D identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; periplasmic [NiFe] hydrogenase small subunit, isozyme 2 2636122..2637036 Desulfovibrio vulgaris str. Hildenborough 2795615 YP_011738.1 CDS hynA-2 NC_002937.3 2637049 2638698 D identified by similarity to SP:P21852; match to protein family HMM PF00374; periplasmic [NiFe] hydrogenase large subunit, isozyme 2 2637049..2638698 Desulfovibrio vulgaris str. Hildenborough 2795616 YP_011739.1 CDS DVU2527 NC_002937.3 2638841 2639239 R identified by similarity to SP:P55323; transcriptional regulator complement(2638841..2639239) Desulfovibrio vulgaris str. Hildenborough 2795617 YP_011740.1 CDS DVU2528 NC_002937.3 2639314 2639511 R hypothetical protein complement(2639314..2639511) Desulfovibrio vulgaris str. Hildenborough 2795618 YP_011741.1 CDS pgk NC_002937.3 2639592 2640773 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(2639592..2640773) Desulfovibrio vulgaris str. Hildenborough 2795619 YP_011742.1 CDS tkt NC_002937.3 2640910 2642904 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(2640910..2642904) Desulfovibrio vulgaris str. Hildenborough 2795716 YP_011743.1 CDS rpe NC_002937.3 2642995 2643663 R identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase complement(2642995..2643663) Desulfovibrio vulgaris str. Hildenborough 2795717 YP_011744.1 CDS DVU2532 NC_002937.3 2643711 2644094 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(2643711..2644094) Desulfovibrio vulgaris str. Hildenborough 2795718 YP_011745.1 CDS pheT NC_002937.3 2644119 2646515 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2644119..2646515) Desulfovibrio vulgaris str. Hildenborough 2795719 YP_011746.1 CDS pheS NC_002937.3 2646695 2647732 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2646695..2647732) Desulfovibrio vulgaris str. Hildenborough 2795720 YP_011747.1 CDS rplT NC_002937.3 2647904 2648257 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2647904..2648257) Desulfovibrio vulgaris str. Hildenborough 2795721 YP_011748.1 CDS rpmI NC_002937.3 2648340 2648537 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(2648340..2648537) Desulfovibrio vulgaris str. Hildenborough 2795722 YP_011749.1 CDS infC NC_002937.3 2648707 2649237 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(2648707..2649237) Desulfovibrio vulgaris str. Hildenborough 2795723 YP_011750.1 CDS thrS NC_002937.3 2649245 2651179 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(2649245..2651179) Desulfovibrio vulgaris str. Hildenborough 2795724 YP_011751.1 CDS DVU2539 NC_002937.3 2651364 2651486 R hypothetical protein complement(2651364..2651486) Desulfovibrio vulgaris str. Hildenborough 2795726 YP_011752.1 CDS DVU2540 NC_002937.3 2651492 2652634 R identified by similarity to GP:38802; match to protein family HMM PF06050; 2-hydroxyglutaryl-CoA dehydratase subunit D complement(2651492..2652634) Desulfovibrio vulgaris str. Hildenborough 2795727 YP_011753.1 CDS DVU2541 NC_002937.3 2652642 2653451 R identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase complement(2652642..2653451) Desulfovibrio vulgaris str. Hildenborough 2795728 YP_011754.1 CDS DVU2542 NC_002937.3 2653647 2653772 D hypothetical protein 2653647..2653772 Desulfovibrio vulgaris str. Hildenborough 2795729 YP_011755.3 CDS DVU2543 NC_002937.3 2653864 2655564 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2653864..2655564 Desulfovibrio vulgaris str. Hildenborough 2795730 YP_011756.1 CDS DVU2544 NC_002937.3 2655623 2656438 D identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 2655623..2656438 Desulfovibrio vulgaris str. Hildenborough 2796118 YP_011757.1 CDS DVU2545 NC_002937.3 2656906 2658066 D identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 2656906..2658066 Desulfovibrio vulgaris str. Hildenborough 2796119 YP_011758.2 CDS DVU2546 NC_002937.3 2658050 2659672 D identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2658050..2659672 Desulfovibrio vulgaris str. Hildenborough 2796120 YP_011759.1 CDS DVU2547 NC_002937.3 2659978 2660664 R identified by match to protein family HMM PF00027; transcriptional regulator complement(2659978..2660664) Desulfovibrio vulgaris str. Hildenborough 2796121 YP_011760.1 CDS acpD NC_002937.3 2660668 2661297 R identified by similarity to SP:P41407; match to protein family HMM PF02525; ACP phosphodiesterase complement(2660668..2661297) Desulfovibrio vulgaris str. Hildenborough 2796122 YP_011761.1 CDS DVU2549 NC_002937.3 2661552 2661827 D hypothetical protein 2661552..2661827 Desulfovibrio vulgaris str. Hildenborough 2796123 YP_011762.1 CDS DVU2550 NC_002937.3 2661932 2662099 D hypothetical protein 2661932..2662099 Desulfovibrio vulgaris str. Hildenborough 2796124 YP_011763.2 CDS DVU2551 NC_002937.3 2662087 2663322 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(2662087..2663322) Desulfovibrio vulgaris str. Hildenborough 2796125 YP_011764.1 CDS gltX NC_002937.3 2663659 2665050 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2663659..2665050) Desulfovibrio vulgaris str. Hildenborough 2796126 YP_011765.1 CDS DVU2553 NC_002937.3 2665224 2665469 R identified by match to protein family HMM PF01106; NifU family protein complement(2665224..2665469) Desulfovibrio vulgaris str. Hildenborough 2796127 YP_011766.1 CDS DVU2554 NC_002937.3 2665572 2666456 R identified by similarity to OMNI:NTL01FN0863; hypothetical protein complement(2665572..2666456) Desulfovibrio vulgaris str. Hildenborough 2796128 YP_011767.1 CDS DVU2555 NC_002937.3 2666443 2667864 R identified by similarity to OMNI:NTL01RSA1213; match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(2666443..2667864) Desulfovibrio vulgaris str. Hildenborough 2796129 YP_011768.1 CDS DVU2556 NC_002937.3 2668011 2668379 D hypothetical protein 2668011..2668379 Desulfovibrio vulgaris str. Hildenborough 2796130 YP_011769.1 CDS birA NC_002937.3 2668667 2669659 R identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121; birA bifunctional protein complement(2668667..2669659) Desulfovibrio vulgaris str. Hildenborough 2796131 YP_011770.1 CDS bioB NC_002937.3 2669895 2670827 D identified by similarity to SP:P53557; match to protein family HMM PF04055; match to protein family HMM TIGR00433; biotin synthase 2669895..2670827 Desulfovibrio vulgaris str. Hildenborough 2796132 YP_011771.1 CDS bioA NC_002937.3 2670824 2672452 D identified by similarity to SP:P53555; match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine--8-amino-7-oxononanoate aminotransferase 2670824..2672452 Desulfovibrio vulgaris str. Hildenborough 2796133 YP_011772.1 CDS DVU2560 NC_002937.3 2672449 2672835 D identified by similarity to SP:O84537; hypothetical protein 2672449..2672835 Desulfovibrio vulgaris str. Hildenborough 2796134 YP_011773.1 CDS DVU2561 NC_002937.3 2672832 2673860 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2672832..2673860 Desulfovibrio vulgaris str. Hildenborough 2796254 YP_011774.1 CDS DVU2562 NC_002937.3 2673960 2674367 D identified by similarity to SP:P20804; acyl carrier protein 2673960..2674367 Desulfovibrio vulgaris str. Hildenborough 2796255 YP_011775.1 CDS DVU2563 NC_002937.3 2674645 2676093 D identified by match to protein family HMM PF00109; match to protein family HMM PF02801; beta-ketoacyl synthase 2674645..2676093 Desulfovibrio vulgaris str. Hildenborough 2796256 YP_011776.1 CDS bioF NC_002937.3 2676659 2677933 D identified by similarity to SP:P22806; 8-amino-7-oxononanoate synthase 2676659..2677933 Desulfovibrio vulgaris str. Hildenborough 2796257 YP_011777.1 CDS bioD NC_002937.3 2677915 2678655 D identified by match to protein family HMM PF01656; match to protein family HMM TIGR00347; dethiobiotin synthetase 2677915..2678655 Desulfovibrio vulgaris str. Hildenborough 2796258 YP_011778.1 CDS lysA-2 NC_002937.3 2678811 2680076 R identified by similarity to SP:P00861; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase complement(2678811..2680076) Desulfovibrio vulgaris str. Hildenborough 2796259 YP_011779.1 CDS DVU2567 NC_002937.3 2680076 2680780 R identified by similarity to OMNI:NTL01BS2704; match to protein family HMM PF01978; hypothetical protein complement(2680076..2680780) Desulfovibrio vulgaris str. Hildenborough 2796260 YP_011780.1 CDS DVU2568 NC_002937.3 2681380 2682618 D identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase 2681380..2682618 Desulfovibrio vulgaris str. Hildenborough 2796261 YP_011781.1 CDS DVU2569 NC_002937.3 2682688 2683113 D identified by similarity to SP:O52980; match to protein family HMM PF00254; peptidyl-prolyl cis-trans isomerase, FKBP-type 2682688..2683113 Desulfovibrio vulgaris str. Hildenborough 2796262 YP_011782.1 CDS DVU2570 NC_002937.3 2683213 2684865 R identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(2683213..2684865) Desulfovibrio vulgaris str. Hildenborough 2796263 YP_011783.1 CDS feoB NC_002937.3 2685003 2687201 R identified by match to protein family HMM PF02421; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B complement(2685003..2687201) Desulfovibrio vulgaris str. Hildenborough 2796264 YP_011784.1 CDS DVU2572 NC_002937.3 2687198 2687458 R identified by similarity to OMNI:NTL02MA3391; match to protein family HMM PF04023; ferrous iron transport protein A complement(2687198..2687458) Desulfovibrio vulgaris str. Hildenborough 2796265 YP_011785.1 CDS DVU2573 NC_002937.3 2687539 2687694 R hypothetical protein complement(2687539..2687694) Desulfovibrio vulgaris str. Hildenborough 2796266 YP_011786.1 CDS DVU2574 NC_002937.3 2687726 2687962 R identified by similarity to GP:19887847; match to protein family HMM PF04023; ferrous ion transport protein complement(2687726..2687962) Desulfovibrio vulgaris str. Hildenborough 2796267 YP_011787.1 CDS DVU2575 NC_002937.3 2688199 2689299 D identified by match to protein family HMM PF01546; M20/M25/M40 family peptidase 2688199..2689299 Desulfovibrio vulgaris str. Hildenborough 2796268 YP_011788.1 CDS DVU2576 NC_002937.3 2689296 2690261 D identified by similarity to SP:P42064; match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 2689296..2690261 Desulfovibrio vulgaris str. Hildenborough 2796269 YP_011789.1 CDS DVU2577 NC_002937.3 2690356 2691006 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 2690356..2691006 Desulfovibrio vulgaris str. Hildenborough 2794984 YP_011790.1 CDS DVU2578 NC_002937.3 2691333 2692022 D identified by match to protein family HMM PF00072; response regulator 2691333..2692022 Desulfovibrio vulgaris str. Hildenborough 2794986 YP_011791.1 CDS DVU2579 NC_002937.3 2698344 2698973 D identified by match to protein family HMM PF00515; hypothetical protein 2698344..2698973 Desulfovibrio vulgaris str. Hildenborough 2794992 YP_011792.1 CDS DVU2580 NC_002937.3 2699014 2703135 D identified by match to protein family HMM PF00072; match to protein family HMM PF02518; response regulator 2699014..2703135 Desulfovibrio vulgaris str. Hildenborough 2794993 YP_011793.1 CDS DVU2581 NC_002937.3 2703132 2703572 D identified by match to protein family HMM PF00072; response regulator 2703132..2703572 Desulfovibrio vulgaris str. Hildenborough 2794994 YP_011794.1 CDS DVU2582 NC_002937.3 2703645 2704232 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2703645..2704232 Desulfovibrio vulgaris str. Hildenborough 2794995 YP_011795.1 CDS DVU2583 NC_002937.3 2704465 2704971 D lipoprotein 2704465..2704971 Desulfovibrio vulgaris str. Hildenborough 2794996 YP_011796.1 CDS DVU2584 NC_002937.3 2705433 2706365 D identified by match to protein family HMM PF01544; CorA family protein 2705433..2706365 Desulfovibrio vulgaris str. Hildenborough 2796362 YP_011797.1 CDS DVU2585 NC_002937.3 2706604 2708484 D identified by similarity to OMNI:TM1428; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2706604..2708484 Desulfovibrio vulgaris str. Hildenborough 2796363 YP_011798.1 CDS DVU2586 NC_002937.3 2709005 2710687 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(2709005..2710687) Desulfovibrio vulgaris str. Hildenborough 2796364 YP_011799.1 CDS DVU2587 NC_002937.3 2710879 2712264 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(2710879..2712264) Desulfovibrio vulgaris str. Hildenborough 2796365 YP_011800.1 CDS DVU2588 NC_002937.3 2712233 2712913 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2712233..2712913) Desulfovibrio vulgaris str. Hildenborough 2796366 YP_011801.1 CDS DVU2589 NC_002937.3 2712971 2713096 R hypothetical protein complement(2712971..2713096) Desulfovibrio vulgaris str. Hildenborough 2796367 YP_011802.1 CDS DVU2590 NC_002937.3 2713242 2714807 D sensory box protein 2713242..2714807 Desulfovibrio vulgaris str. Hildenborough 2796368 YP_011803.1 CDS DVU2591 NC_002937.3 2714953 2715462 R tail fiber assembly protein complement(2714953..2715462) Desulfovibrio vulgaris str. Hildenborough 2796369 YP_011804.1 CDS DVU2592 NC_002937.3 2715455 2715793 R hypothetical protein complement(2715455..2715793) Desulfovibrio vulgaris str. Hildenborough 2796370 YP_011805.1 CDS DVU2593 NC_002937.3 2716465 2716836 D hypothetical protein 2716465..2716836 Desulfovibrio vulgaris str. Hildenborough 2796371 YP_011806.1 CDS DVU2594 NC_002937.3 2716907 2717218 D hypothetical protein 2716907..2717218 Desulfovibrio vulgaris str. Hildenborough 2796372 YP_011807.1 CDS DVU2595 NC_002937.3 2717383 2717958 R hypothetical protein complement(2717383..2717958) Desulfovibrio vulgaris str. Hildenborough 2796373 YP_011808.1 CDS DVU2596 NC_002937.3 2717955 2718734 R hypothetical protein complement(2717955..2718734) Desulfovibrio vulgaris str. Hildenborough 2796374 YP_011809.1 CDS DVU2597 NC_002937.3 2718792 2718989 D hypothetical protein 2718792..2718989 Desulfovibrio vulgaris str. Hildenborough 2796375 YP_011810.1 CDS DVU2598 NC_002937.3 2720054 2720608 R hypothetical protein complement(2720054..2720608) Desulfovibrio vulgaris str. Hildenborough 2796376 YP_011811.1 CDS DVU2599 NC_002937.3 2720598 2721041 R hypothetical protein complement(2720598..2721041) Desulfovibrio vulgaris str. Hildenborough 2796377 YP_011812.1 CDS DVU2600 NC_002937.3 2721182 2721583 R hypothetical protein complement(2721182..2721583) Desulfovibrio vulgaris str. Hildenborough 2796378 YP_003858623.1 CDS DVU4020 NC_002937.3 2721610 2722524 R hypothetical protein complement(2721610..2722524) Desulfovibrio vulgaris str. Hildenborough 9714842 YP_011814.1 CDS DVU2602 NC_002937.3 2722536 2723219 R identified by similarity to OMNI:NTL02SC5552; hypothetical protein complement(2722536..2723219) Desulfovibrio vulgaris str. Hildenborough 2793898 YP_011815.1 CDS DVU2603 NC_002937.3 2723281 2723688 R hypothetical protein complement(2723281..2723688) Desulfovibrio vulgaris str. Hildenborough 2793899 YP_011816.1 CDS DVU2604 NC_002937.3 2723678 2725387 R identified by similarity to GP:13186164; hypothetical protein complement(2723678..2725387) Desulfovibrio vulgaris str. Hildenborough 2793900 YP_011817.1 CDS DVU2605 NC_002937.3 2725387 2725821 R hypothetical protein complement(2725387..2725821) Desulfovibrio vulgaris str. Hildenborough 2793901 YP_011818.1 CDS DVU2606 NC_002937.3 2725862 2726161 D hypothetical protein 2725862..2726161 Desulfovibrio vulgaris str. Hildenborough 2793902 YP_011819.1 CDS DVU2607 NC_002937.3 2726271 2726897 D hypothetical protein 2726271..2726897 Desulfovibrio vulgaris str. Hildenborough 2793903 YP_011820.1 CDS motA-3 NC_002937.3 2726913 2727758 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 2726913..2727758 Desulfovibrio vulgaris str. Hildenborough 2793904 YP_011821.1 CDS DVU2609 NC_002937.3 2727785 2728516 D identified by similarity to GP:4426946; match to protein family HMM PF00691; chemotaxis MotB protein 2727785..2728516 Desulfovibrio vulgaris str. Hildenborough 2793905 YP_011822.1 CDS DVU2610 NC_002937.3 2728550 2729227 R hypothetical protein complement(2728550..2729227) Desulfovibrio vulgaris str. Hildenborough 2793906 YP_011823.1 CDS DVU2611 NC_002937.3 2729301 2730860 R hypothetical protein complement(2729301..2730860) Desulfovibrio vulgaris str. Hildenborough 2793907 YP_011824.1 CDS DVU2612 NC_002937.3 2731396 2731785 D identified by similarity to OMNI:NTL03PA02779; hypothetical protein 2731396..2731785 Desulfovibrio vulgaris str. Hildenborough 2793908 YP_011825.1 CDS DVU2613 NC_002937.3 2731832 2732398 D hypothetical protein 2731832..2732398 Desulfovibrio vulgaris str. Hildenborough 2793909 YP_011826.1 CDS DVU2614 NC_002937.3 2732473 2733090 D hypothetical protein 2732473..2733090 Desulfovibrio vulgaris str. Hildenborough 2793910 YP_011827.1 CDS DVU2615 NC_002937.3 2733693 2734541 D identified by similarity to SP:P02911; match to protein family HMM PF00497; solute-binding family 1 protein 2733693..2734541 Desulfovibrio vulgaris str. Hildenborough 2793911 YP_011828.1 CDS DVU2616 NC_002937.3 2734559 2737561 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 2734559..2737561 Desulfovibrio vulgaris str. Hildenborough 2793912 YP_011829.1 CDS DVU2617 NC_002937.3 2737933 2739153 D identified by match to protein family HMM PF01699; sodium/calcium exchanger family protein 2737933..2739153 Desulfovibrio vulgaris str. Hildenborough 2793913 YP_011830.1 CDS DVU2618 NC_002937.3 2739231 2739395 D hypothetical protein 2739231..2739395 Desulfovibrio vulgaris str. Hildenborough 2793914 YP_011831.1 CDS DVU2619 NC_002937.3 2739486 2740214 D identified by similarity to OMNI:NTL03CP2311; hypothetical protein 2739486..2740214 Desulfovibrio vulgaris str. Hildenborough 2795236 YP_011832.1 CDS DVU2620 NC_002937.3 2740315 2741475 D identified by similarity to OMNI:CC3039; hypothetical protein 2740315..2741475 Desulfovibrio vulgaris str. Hildenborough 2795237 YP_011833.1 CDS DVU2621 NC_002937.3 2741758 2742570 D hypothetical protein 2741758..2742570 Desulfovibrio vulgaris str. Hildenborough 2795238 YP_011834.1 CDS DVU2622 NC_002937.3 2742580 2742768 R hypothetical protein complement(2742580..2742768) Desulfovibrio vulgaris str. Hildenborough 2795239 YP_011835.1 CDS DVU2623 NC_002937.3 2743066 2743413 D hypothetical protein 2743066..2743413 Desulfovibrio vulgaris str. Hildenborough 2795240 YP_011836.1 CDS DVU2624 NC_002937.3 2743548 2744045 D hypothetical protein 2743548..2744045 Desulfovibrio vulgaris str. Hildenborough 2795241 YP_011837.1 CDS DVU2625 NC_002937.3 2744142 2744243 R hypothetical protein complement(2744142..2744243) Desulfovibrio vulgaris str. Hildenborough 2795242 YP_011838.1 CDS DVU2626 NC_002937.3 2744233 2744439 D hypothetical protein 2744233..2744439 Desulfovibrio vulgaris str. Hildenborough 2795243 YP_011839.1 CDS DVU2627 NC_002937.3 2744482 2744859 R hypothetical protein complement(2744482..2744859) Desulfovibrio vulgaris str. Hildenborough 2795244 YP_011840.1 CDS DVU2628 NC_002937.3 2744871 2745449 R identified by match to protein family HMM PF00515; hypothetical protein complement(2744871..2745449) Desulfovibrio vulgaris str. Hildenborough 2795245 YP_011841.1 CDS DVU2629 NC_002937.3 2745487 2746038 D hypothetical protein 2745487..2746038 Desulfovibrio vulgaris str. Hildenborough 2795246 YP_011842.1 CDS DVU2630 NC_002937.3 2746127 2747002 D lipoprotein 2746127..2747002 Desulfovibrio vulgaris str. Hildenborough 2795247 YP_011843.1 CDS DVU2631 NC_002937.3 2747566 2747937 R hypothetical protein complement(2747566..2747937) Desulfovibrio vulgaris str. Hildenborough 2795248 YP_011844.1 CDS DVU2632 NC_002937.3 2748064 2748300 D hypothetical protein 2748064..2748300 Desulfovibrio vulgaris str. Hildenborough 2795249 YP_011845.1 CDS DVU2633 NC_002937.3 2748792 2749565 D identified by similarity to SP:Q06553; match to protein family HMM PF00717; transcriptional regulator 2748792..2749565 Desulfovibrio vulgaris str. Hildenborough 2795250 YP_011846.1 CDS DVU2634 NC_002937.3 2749602 2749853 D hypothetical protein 2749602..2749853 Desulfovibrio vulgaris str. Hildenborough 2795251 YP_011847.1 CDS DVU2635 NC_002937.3 2750041 2751174 D identified by similarity to SP:P25740; match to protein family HMM PF00534; glycosyl transferase family protein 2750041..2751174 Desulfovibrio vulgaris str. Hildenborough 2795252 YP_011848.1 CDS DVU2636 NC_002937.3 2751297 2752466 R hypothetical protein complement(2751297..2752466) Desulfovibrio vulgaris str. Hildenborough 2795253 YP_011849.2 CDS DVU2637 NC_002937.3 2752529 2754037 R identified by match to protein family HMM PF00672; HAMP domain-containing protein complement(2752529..2754037) Desulfovibrio vulgaris str. Hildenborough 2795693 YP_011850.1 CDS DVU2638 NC_002937.3 2754320 2755408 R hypothetical protein complement(2754320..2755408) Desulfovibrio vulgaris str. Hildenborough 2795694 YP_011851.1 CDS DVU2639 NC_002937.3 2755631 2755933 D identified by similarity to GP:15025399; hypothetical protein 2755631..2755933 Desulfovibrio vulgaris str. Hildenborough 2795695 YP_011852.1 CDS DVU2640 NC_002937.3 2756286 2757026 D hypothetical protein 2756286..2757026 Desulfovibrio vulgaris str. Hildenborough 2795696 YP_011853.1 CDS DVU2641 NC_002937.3 2757048 2757782 D lipoprotein 2757048..2757782 Desulfovibrio vulgaris str. Hildenborough 2795697 YP_011854.1 CDS DVU2642 NC_002937.3 2757848 2758291 D alanyl-tRNA synthetase 2757848..2758291 Desulfovibrio vulgaris str. Hildenborough 2795698 YP_011855.1 CDS htpG NC_002937.3 2758472 2760385 D molecular chaperone; heat shock protein 90 2758472..2760385 Desulfovibrio vulgaris str. Hildenborough 2795699 YP_011856.1 CDS DVU2644 NC_002937.3 2760784 2761455 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(2760784..2761455) Desulfovibrio vulgaris str. Hildenborough 2795700 YP_011857.1 CDS DVU2645 NC_002937.3 2761599 2762999 R identified by similarity to SP:P27611; Na+/H+ antiporter family protein complement(2761599..2762999) Desulfovibrio vulgaris str. Hildenborough 2795701 YP_011858.1 CDS DVU2646 NC_002937.3 2763062 2764060 R catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase complement(2763062..2764060) Desulfovibrio vulgaris str. Hildenborough 2795702 YP_011859.1 CDS DVU2647 NC_002937.3 2764110 2764499 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; L-PSP family endoribonuclease complement(2764110..2764499) Desulfovibrio vulgaris str. Hildenborough 2795703 YP_011860.1 CDS DVU2648 NC_002937.3 2764569 2764895 D hypothetical protein 2764569..2764895 Desulfovibrio vulgaris str. Hildenborough 2795704 YP_011861.1 CDS DVU2649 NC_002937.3 2764892 2765152 D hypothetical protein 2764892..2765152 Desulfovibrio vulgaris str. Hildenborough 2795705 YP_011862.1 CDS DVU2650 NC_002937.3 2765697 2766302 R hypothetical protein complement(2765697..2766302) Desulfovibrio vulgaris str. Hildenborough 2795706 YP_011863.1 CDS DVU2651 NC_002937.3 2766455 2766631 R hypothetical protein complement(2766455..2766631) Desulfovibrio vulgaris str. Hildenborough 2795707 YP_011864.1 CDS DVU2652 NC_002937.3 2766824 2767405 R hypothetical protein complement(2766824..2767405) Desulfovibrio vulgaris str. Hildenborough 2795708 YP_011865.1 CDS DVU2653 NC_002937.3 2767551 2767751 D hypothetical protein 2767551..2767751 Desulfovibrio vulgaris str. Hildenborough 2795709 YP_011866.1 CDS DVU2654 NC_002937.3 2767848 2768105 D hypothetical protein 2767848..2768105 Desulfovibrio vulgaris str. Hildenborough 2795710 YP_011867.1 CDS DVU2655 NC_002937.3 2768362 2769687 D identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 2768362..2769687 Desulfovibrio vulgaris str. Hildenborough 2796222 YP_011868.1 CDS DVU2656 NC_002937.3 2769777 2770001 R hypothetical protein complement(2769777..2770001) Desulfovibrio vulgaris str. Hildenborough 2796223 YP_011869.1 CDS DVU2657 NC_002937.3 2770045 2770407 R identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase complement(2770045..2770407) Desulfovibrio vulgaris str. Hildenborough 2796224 YP_011870.1 CDS DVU2658 NC_002937.3 2770670 2771320 R hypothetical protein complement(2770670..2771320) Desulfovibrio vulgaris str. Hildenborough 2796225 YP_011871.1 CDS DVU2659 NC_002937.3 2771317 2772045 R identified by match to protein family HMM TIGR00364; exsB protein complement(2771317..2772045) Desulfovibrio vulgaris str. Hildenborough 2796226 YP_011872.1 CDS DVU2660 NC_002937.3 2772210 2772371 R hypothetical protein complement(2772210..2772371) Desulfovibrio vulgaris str. Hildenborough 2796227 YP_011873.1 CDS DVU2661 NC_002937.3 2772423 2773988 D twin-arginine translocation pathway signal sequence domain-containing protein 2772423..2773988 Desulfovibrio vulgaris str. Hildenborough 2796228 YP_011874.1 CDS DVU2662 NC_002937.3 2774135 2774899 D identified by similarity to SP:P54952; hypothetical protein 2774135..2774899 Desulfovibrio vulgaris str. Hildenborough 2796229 YP_011875.1 CDS DVU2663 NC_002937.3 2774924 2775400 R identified by similarity to GP:19886926; hypothetical protein complement(2774924..2775400) Desulfovibrio vulgaris str. Hildenborough 2796230 YP_011876.1 CDS DVU2664 NC_002937.3 2775403 2776269 R identified by similarity to OMNI:NTL03PA05367; match to protein family HMM PF00005; phosphate ABC transporter ATP-binding protein complement(2775403..2776269) Desulfovibrio vulgaris str. Hildenborough 2796231 YP_011877.1 CDS DVU2665 NC_002937.3 2776301 2777185 R identified by similarity to OMNI:NTL02MA0874; match to protein family HMM PF00528; phosphate ABC transporter permease complement(2776301..2777185) Desulfovibrio vulgaris str. Hildenborough 2796232 YP_011878.1 CDS DVU2666 NC_002937.3 2777221 2778096 R identified by similarity to OMNI:NTL01MT01690; match to protein family HMM PF00528; phosphate ABC transporter permease complement(2777221..2778096) Desulfovibrio vulgaris str. Hildenborough 2796233 YP_011879.1 CDS DVU2667 NC_002937.3 2778093 2778971 R identified by similarity to SP:P46338; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein complement(2778093..2778971) Desulfovibrio vulgaris str. Hildenborough 2796234 YP_011880.1 CDS glmU NC_002937.3 2779417 2780784 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 2779417..2780784 Desulfovibrio vulgaris str. Hildenborough 2796235 YP_011881.1 CDS DVU2669 NC_002937.3 2780816 2781052 D hypothetical protein 2780816..2781052 Desulfovibrio vulgaris str. Hildenborough 2796236 YP_011882.1 CDS DVU2670 NC_002937.3 2781072 2781335 D hypothetical protein 2781072..2781335 Desulfovibrio vulgaris str. Hildenborough 2796237 YP_011883.1 CDS DVU2671 NC_002937.3 2781727 2783286 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 2781727..2783286 Desulfovibrio vulgaris str. Hildenborough 2796238 YP_011884.1 CDS DVU2672 NC_002937.3 2783384 2784007 D identified by similarity to SP:Q9RKM3; match to protein family HMM PF03458; hypothetical protein 2783384..2784007 Desulfovibrio vulgaris str. Hildenborough 2796239 YP_011885.1 CDS DVU2673 NC_002937.3 2784563 2785732 D identified by similarity to SP:P13032; match to protein family HMM PF01266; anaerobic glycerol-3-phosphate dehydrogenase subunit A, truncation 2784563..2785732 Desulfovibrio vulgaris str. Hildenborough 2795044 YP_011886.1 CDS DVU2674 NC_002937.3 2785734 2786453 D identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384; succinate dehydrogenase and fumarate reductase iron-sulfur protein 2785734..2786453 Desulfovibrio vulgaris str. Hildenborough 2795045 YP_011887.1 CDS DVU2675 NC_002937.3 2786675 2787358 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator complement(2786675..2787358) Desulfovibrio vulgaris str. Hildenborough 2795046 YP_011888.1 CDS DVU2676 NC_002937.3 2787609 2787875 D hypothetical protein 2787609..2787875 Desulfovibrio vulgaris str. Hildenborough 2795047 YP_011889.1 CDS DVU2677 NC_002937.3 2788003 2789466 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 2788003..2789466 Desulfovibrio vulgaris str. Hildenborough 2795048 YP_011890.1 CDS DVU2678 NC_002937.3 2789463 2790665 D identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; RNA pseudouridine synthase 2789463..2790665 Desulfovibrio vulgaris str. Hildenborough 2795049 YP_011891.1 CDS DVU2679 NC_002937.3 2790679 2793696 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator complement(2790679..2793696) Desulfovibrio vulgaris str. Hildenborough 2795050 YP_011892.1 CDS DVU2680 NC_002937.3 2794035 2794481 D identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753; flavodoxin 2794035..2794481 Desulfovibrio vulgaris str. Hildenborough 2795051 YP_011893.1 CDS DVU2681 NC_002937.3 2794603 2794785 R hypothetical protein complement(2794603..2794785) Desulfovibrio vulgaris str. Hildenborough 2795052 YP_011894.1 CDS DVU2682 NC_002937.3 2795218 2795859 R identified by similarity to GP:13446681; match to protein family HMM PF00597; DedA family protein complement(2795218..2795859) Desulfovibrio vulgaris str. Hildenborough 2795053 YP_011895.1 CDS DVU2683 NC_002937.3 2796644 2798194 D L-lactate permease 2796644..2798194 Desulfovibrio vulgaris str. Hildenborough 2795054 YP_011896.1 CDS DVU2684 NC_002937.3 2798343 2799215 R hypothetical protein complement(2798343..2799215) Desulfovibrio vulgaris str. Hildenborough 2795055 YP_011897.1 CDS DVU2685 NC_002937.3 2799302 2799535 R hypothetical protein complement(2799302..2799535) Desulfovibrio vulgaris str. Hildenborough 2795056 YP_011898.1 CDS DVU2686 NC_002937.3 2799591 2800373 R identified by match to protein family HMM PF00717; S24 family peptidase complement(2799591..2800373) Desulfovibrio vulgaris str. Hildenborough 2795057 YP_011899.1 CDS DVU2687 NC_002937.3 2800560 2801090 D hypothetical protein 2800560..2801090 Desulfovibrio vulgaris str. Hildenborough 2795058 YP_011900.1 CDS DVU2688 NC_002937.3 2801478 2803520 D identified by similarity to SP:P07636; match to protein family HMM PF00665; bacteriophage transposase A protein 2801478..2803520 Desulfovibrio vulgaris str. Hildenborough 2795059 YP_011901.1 CDS DVU2689 NC_002937.3 2803529 2804314 D identified by similarity to SP:P03763; bacteriophage DNA transposition B protein 2803529..2804314 Desulfovibrio vulgaris str. Hildenborough 2795060 YP_011902.1 CDS DVU2690 NC_002937.3 2804317 2804904 D hypothetical protein 2804317..2804904 Desulfovibrio vulgaris str. Hildenborough 2793746 YP_011903.1 CDS DVU2691 NC_002937.3 2805178 2805711 D hypothetical protein 2805178..2805711 Desulfovibrio vulgaris str. Hildenborough 2793747 YP_011904.1 CDS DVU2692 NC_002937.3 2805721 2805957 D hypothetical protein 2805721..2805957 Desulfovibrio vulgaris str. Hildenborough 2793748 YP_011905.1 CDS DVU2693 NC_002937.3 2806043 2806282 D hypothetical protein 2806043..2806282 Desulfovibrio vulgaris str. Hildenborough 2793749 YP_011906.1 CDS DVU2694 NC_002937.3 2806364 2806798 D hypothetical protein 2806364..2806798 Desulfovibrio vulgaris str. Hildenborough 2793750 YP_011907.1 CDS DVU2695 NC_002937.3 2806807 2807223 D hypothetical protein 2806807..2807223 Desulfovibrio vulgaris str. Hildenborough 2793751 YP_011908.1 CDS DVU2696 NC_002937.3 2807220 2807708 D identified by similarity to OMNI:NMB1083; hypothetical protein 2807220..2807708 Desulfovibrio vulgaris str. Hildenborough 2793752 YP_011909.1 CDS DVU2697 NC_002937.3 2807721 2808059 D hypothetical protein 2807721..2808059 Desulfovibrio vulgaris str. Hildenborough 2793753 YP_011910.1 CDS DVU2698 NC_002937.3 2808172 2808534 D lipoprotein 2808172..2808534 Desulfovibrio vulgaris str. Hildenborough 2793754 YP_011911.1 CDS DVU2699 NC_002937.3 2808534 2809181 D identified by match to protein family HMM PF01464; transglycosylase 2808534..2809181 Desulfovibrio vulgaris str. Hildenborough 2793755 YP_011912.1 CDS DVU2700 NC_002937.3 2809174 2809593 D hypothetical protein 2809174..2809593 Desulfovibrio vulgaris str. Hildenborough 2793756 YP_011913.1 CDS DVU2701 NC_002937.3 2809622 2809840 D hypothetical protein 2809622..2809840 Desulfovibrio vulgaris str. Hildenborough 2793757 YP_011914.1 CDS DVU2702 NC_002937.3 2809844 2810125 D identified by similarity to OMNI:NTL01NM01121; hypothetical protein 2809844..2810125 Desulfovibrio vulgaris str. Hildenborough 2793758 YP_011915.1 CDS DVU2703 NC_002937.3 2810112 2810327 D hypothetical protein 2810112..2810327 Desulfovibrio vulgaris str. Hildenborough 2793759 YP_011916.1 CDS DVU2704 NC_002937.3 2810329 2810847 D identified by similarity to OMNI:NMB1092; hypothetical protein 2810329..2810847 Desulfovibrio vulgaris str. Hildenborough 2793760 YP_011917.1 CDS DVU2705 NC_002937.3 2810844 2812520 D identified by match to protein family HMM TIGR01630; phage protein 2810844..2812520 Desulfovibrio vulgaris str. Hildenborough 2793761 YP_011918.1 CDS DVU2706 NC_002937.3 2812507 2814225 D identified by similarity to OMNI:NTL01NM01730; match to protein family HMM PF06074; hypothetical protein 2812507..2814225 Desulfovibrio vulgaris str. Hildenborough 2793762 YP_011919.1 CDS DVU2707 NC_002937.3 2814228 2815478 D identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; virion morphogenesis protein 2814228..2815478 Desulfovibrio vulgaris str. Hildenborough 2793763 YP_011920.1 CDS DVU2708 NC_002937.3 2815643 2816131 D identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635; virion morphogenesis protein 2815643..2816131 Desulfovibrio vulgaris str. Hildenborough 2793764 YP_003858624.1 CDS DVU4026 NC_002937.3 2816266 2816802 D hypothetical protein 2816266..2816802 Desulfovibrio vulgaris str. Hildenborough 9714841 YP_011922.1 CDS DVU2710 NC_002937.3 2816859 2818019 D identified by similarity to OMNI:NTL01NM01727; hypothetical protein 2816859..2818019 Desulfovibrio vulgaris str. Hildenborough 2794000 YP_011923.1 CDS DVU2711 NC_002937.3 2818020 2818949 D identified by similarity to SP:Q9T1W1; major head subunit 2818020..2818949 Desulfovibrio vulgaris str. Hildenborough 2794001 YP_011924.1 CDS DVU2712 NC_002937.3 2818961 2819290 D hypothetical protein 2818961..2819290 Desulfovibrio vulgaris str. Hildenborough 2794002 YP_011925.1 CDS DVU2713 NC_002937.3 2819290 2819721 D hypothetical protein 2819290..2819721 Desulfovibrio vulgaris str. Hildenborough 2794003 YP_011926.1 CDS DVU2714 NC_002937.3 2819718 2820347 D identified by similarity to GP:6900380; hypothetical protein 2819718..2820347 Desulfovibrio vulgaris str. Hildenborough 2794004 YP_011927.1 CDS DVU2715 NC_002937.3 2820350 2820535 D identified by similarity to OMNI:NMB1103; hypothetical protein 2820350..2820535 Desulfovibrio vulgaris str. Hildenborough 2794005 YP_011928.1 CDS DVU2716 NC_002937.3 2820522 2821943 D identified by similarity to SP:P79678; tail sheath protein 2820522..2821943 Desulfovibrio vulgaris str. Hildenborough 2794006 YP_011929.1 CDS DVU2717 NC_002937.3 2822022 2822849 D hypothetical protein 2822022..2822849 Desulfovibrio vulgaris str. Hildenborough 2794007 YP_011930.1 CDS DVU2718 NC_002937.3 2822842 2822994 D hypothetical protein 2822842..2822994 Desulfovibrio vulgaris str. Hildenborough 2794008 YP_011931.1 CDS DVU2719 NC_002937.3 2822985 2823359 D identified by similarity to OMNI:NMB1105; hypothetical protein 2822985..2823359 Desulfovibrio vulgaris str. Hildenborough 2794009 YP_011932.1 CDS DVU2720 NC_002937.3 2823557 2823886 D hypothetical protein 2823557..2823886 Desulfovibrio vulgaris str. Hildenborough 2794010 YP_011933.1 CDS DVU2721 NC_002937.3 2824045 2825985 D TP901 family phage tail tape measure protein 2824045..2825985 Desulfovibrio vulgaris str. Hildenborough 2794011 YP_011934.1 CDS DVU2722 NC_002937.3 2826005 2827345 D identified by similarity to OMNI:NTL01NM01712; hypothetical protein 2826005..2827345 Desulfovibrio vulgaris str. Hildenborough 2794012 YP_011935.1 CDS DVU2723 NC_002937.3 2827365 2828489 D identified by similarity to SP:P08558; tail protein 2827365..2828489 Desulfovibrio vulgaris str. Hildenborough 2794013 YP_011936.1 CDS DVU2724 NC_002937.3 2828486 2829112 D identified by match to protein family HMM TIGR01644; phage baseplate assembly protein V 2828486..2829112 Desulfovibrio vulgaris str. Hildenborough 2794014 YP_011937.2 CDS DVU2725 NC_002937.3 2829051 2829500 R hypothetical protein complement(2829051..2829500) Desulfovibrio vulgaris str. Hildenborough 2794015 YP_011939.1 CDS DVU2727 NC_002937.3 2829573 2829929 D identified by similarity to OMNI:NTL01NM01233; hypothetical protein 2829573..2829929 Desulfovibrio vulgaris str. Hildenborough 2795928 YP_011940.1 CDS DVU2728 NC_002937.3 2829939 2831000 D identified by similarity to GP:19483757; tail protein 2829939..2831000 Desulfovibrio vulgaris str. Hildenborough 2795929 YP_011941.1 CDS DVU2729 NC_002937.3 2830997 2831590 D identified by similarity to GP:19483737; tail protein 2830997..2831590 Desulfovibrio vulgaris str. Hildenborough 2795930 YP_011942.1 CDS DVU2730 NC_002937.3 2831674 2832564 D tail fiber protein 2831674..2832564 Desulfovibrio vulgaris str. Hildenborough 2795931 YP_011943.1 CDS DVU2731 NC_002937.3 2832574 2833113 D tail fiber assembly protein 2832574..2833113 Desulfovibrio vulgaris str. Hildenborough 2795932 YP_011944.1 CDS DVU2732 NC_002937.3 2833414 2833614 D identified by similarity to OMNI:NTL03EC5013; hypothetical protein 2833414..2833614 Desulfovibrio vulgaris str. Hildenborough 2795933 YP_011945.1 CDS DVU2733 NC_002937.3 2833587 2834336 D identified by match to protein family HMM PF01555; adenine specific DNA methyltransferase 2833587..2834336 Desulfovibrio vulgaris str. Hildenborough 2795934 YP_003858625.1 CDS DVU4022 NC_002937.3 2835038 2836108 D hypothetical protein 2835038..2836108 Desulfovibrio vulgaris str. Hildenborough 9714840 YP_011947.1 CDS paaK-3 NC_002937.3 2836219 2837517 D identified by similarity to SP:P76085; phenylacetate-coenzyme A ligase 2836219..2837517 Desulfovibrio vulgaris str. Hildenborough 2795937 YP_011948.1 CDS DVU2736 NC_002937.3 2837699 2838208 D hypothetical protein 2837699..2838208 Desulfovibrio vulgaris str. Hildenborough 2795938 YP_011949.1 CDS DVU2737 NC_002937.3 2838542 2839306 D identified by match to protein family HMM PF00588; RNA methyltransferase 2838542..2839306 Desulfovibrio vulgaris str. Hildenborough 2795939 YP_011950.1 CDS DVU2738 NC_002937.3 2839544 2841949 D identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 2839544..2841949 Desulfovibrio vulgaris str. Hildenborough 2795940 YP_011951.2 CDS DVU2739 NC_002937.3 2842359 2845445 D identified by similarity to SP:O29548; match to protein family HMM PF00391; match to protein family HMM PF01326; pyruvate phosphate dikinase PEP/pyruvate binding subunit 2842359..2845445 Desulfovibrio vulgaris str. Hildenborough 2795941 YP_011952.1 CDS livF NC_002937.3 2845923 2846648 R identified by similarity to SP:P21630; match to protein family HMM PF00005; high-affinity branched-chain amino acid ABC transporter ATP-binding protein complement(2845923..2846648) Desulfovibrio vulgaris str. Hildenborough 2795942 YP_011953.1 CDS livG NC_002937.3 2846648 2847415 R identified by similarity to SP:P22730; match to protein family HMM PF00005; high-affinity branched chain amino acid ABC transporter ATP-binding protein complement(2846648..2847415) Desulfovibrio vulgaris str. Hildenborough 2795943 YP_011954.1 CDS livM NC_002937.3 2847425 2848501 R identified by similarity to SP:P22729; match to protein family HMM PF02653; high-affinity branched chain amino acid ABC transporter permease complement(2847425..2848501) Desulfovibrio vulgaris str. Hildenborough 2795944 YP_011955.1 CDS livH NC_002937.3 2848524 2849444 R identified by match to protein family HMM PF02653; high-affinity branched-chain amino acid ABC ransporter, permease complement(2848524..2849444) Desulfovibrio vulgaris str. Hildenborough 2795945 YP_011956.1 CDS DVU2744 NC_002937.3 2849554 2850711 R identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter perisplasmic amino acid binding protein complement(2849554..2850711) Desulfovibrio vulgaris str. Hildenborough 2794017 YP_011957.1 CDS DVU2745 NC_002937.3 2850916 2851014 R hypothetical protein complement(2850916..2851014) Desulfovibrio vulgaris str. Hildenborough 2794018 YP_011958.1 CDS DVU2746 NC_002937.3 2851089 2852033 D identified by similarity to OMNI:NTL01FN0227; hypothetical protein 2851089..2852033 Desulfovibrio vulgaris str. Hildenborough 2794019 YP_011959.1 CDS DVU2747 NC_002937.3 2852451 2855495 D hypothetical protein 2852451..2855495 Desulfovibrio vulgaris str. Hildenborough 2794020 YP_011960.1 CDS cobM NC_002937.3 2855627 2856400 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase complement(2855627..2856400) Desulfovibrio vulgaris str. Hildenborough 2794021 YP_011961.1 CDS cobL NC_002937.3 2856418 2857878 R identified by similarity to SP:P21921; match to protein family HMM PF00590; match to protein family HMM TIGR01468; precorrin-6Y C5,15-methyltransferase (decarboxylating) complement(2856418..2857878) Desulfovibrio vulgaris str. Hildenborough 2794022 YP_011962.1 CDS cbiD NC_002937.3 2858736 2859905 R identified by match to protein family HMM PF01888; match to protein family HMM TIGR00312; cobalamin biosynthesis protein CbiD complement(2858736..2859905) Desulfovibrio vulgaris str. Hildenborough 2794023 YP_011963.1 CDS DVU2751 NC_002937.3 2860015 2860575 D hypothetical protein 2860015..2860575 Desulfovibrio vulgaris str. Hildenborough 2794024 YP_011964.1 CDS DVU2752 NC_002937.3 2860586 2861107 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 2860586..2861107 Desulfovibrio vulgaris str. Hildenborough 2794025 YP_011965.1 CDS DVU2753 NC_002937.3 2861217 2862044 D identified by match to protein family HMM TIGR01909; hypothetical protein 2861217..2862044 Desulfovibrio vulgaris str. Hildenborough 2794026 YP_011966.1 CDS qor NC_002937.3 2862310 2863287 R identified by similarity to SP:P28304; match to protein family HMM PF00107; quinone oxidoreductase complement(2862310..2863287) Desulfovibrio vulgaris str. Hildenborough 2794027 YP_011967.1 CDS DVU2755 NC_002937.3 2863564 2864406 R identified by similarity to OMNI:DR1011; match to protein family HMM PF02642; hypothetical protein complement(2863564..2864406) Desulfovibrio vulgaris str. Hildenborough 2794028 YP_011968.1 CDS DVU2756 NC_002937.3 2864853 2865971 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; radical SAM domain-containing protein 2864853..2865971 Desulfovibrio vulgaris str. Hildenborough 2794029 YP_011969.1 CDS DVU2757 NC_002937.3 2865968 2867095 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; radical SAM domain-containing protein 2865968..2867095 Desulfovibrio vulgaris str. Hildenborough 2794030 YP_011970.1 CDS DVU2758 NC_002937.3 2867157 2867999 D identified by similarity to GP:7242723; match to protein family HMM PF02621; hypothetical protein 2867157..2867999 Desulfovibrio vulgaris str. Hildenborough 2794031 YP_011971.1 CDS DVU2759 NC_002937.3 2868041 2868187 R hypothetical protein complement(2868041..2868187) Desulfovibrio vulgaris str. Hildenborough 2794032 YP_011972.1 CDS DVU2760 NC_002937.3 2868372 2868983 D hypothetical protein 2868372..2868983 Desulfovibrio vulgaris str. Hildenborough 2794033 YP_011973.1 CDS DVU2761 NC_002937.3 2869107 2869292 R hypothetical protein complement(2869107..2869292) Desulfovibrio vulgaris str. Hildenborough 2794034 YP_011974.1 CDS DVU2762 NC_002937.3 2869357 2870277 R identified by similarity to GP:7379678; match to protein family HMM PF00892; hypothetical protein complement(2869357..2870277) Desulfovibrio vulgaris str. Hildenborough 2794035 YP_011975.1 CDS DVU2763 NC_002937.3 2870485 2873160 R identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254; TPR/GGDEF domain-containing protein complement(2870485..2873160) Desulfovibrio vulgaris str. Hildenborough 2794036 YP_011976.1 CDS DVU2764 NC_002937.3 2873200 2873718 D identified by match to protein family HMM PF00881; nitroreductase 2873200..2873718 Desulfovibrio vulgaris str. Hildenborough 2796314 YP_011977.1 CDS DVU2765 NC_002937.3 2873718 2874344 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 2873718..2874344 Desulfovibrio vulgaris str. Hildenborough 2796315 YP_011978.1 CDS DVU2766 NC_002937.3 2874432 2874599 D hypothetical protein 2874432..2874599 Desulfovibrio vulgaris str. Hildenborough 2796316 YP_011979.1 CDS DVU2767 NC_002937.3 2874596 2875210 D iron-sulfur flavoprotein 2874596..2875210 Desulfovibrio vulgaris str. Hildenborough 2796317 YP_011980.1 CDS DVU2768 NC_002937.3 2875302 2876198 D identified by similarity to SP:P31773; comF family protein 2875302..2876198 Desulfovibrio vulgaris str. Hildenborough 2796318 YP_011981.1 CDS DVU2769 NC_002937.3 2876621 2877403 D identified by similarity to OMNI:NTL01FN1523; hypothetical protein 2876621..2877403 Desulfovibrio vulgaris str. Hildenborough 2796319 YP_011982.1 CDS DVU2770 NC_002937.3 2877513 2877911 D identified by match to protein family HMM PF00072; response regulator 2877513..2877911 Desulfovibrio vulgaris str. Hildenborough 2796320 YP_011983.1 CDS DVU2771 NC_002937.3 2877923 2878888 D identified by similarity to OMNI:NTL01RS0459; hypothetical protein 2877923..2878888 Desulfovibrio vulgaris str. Hildenborough 2796321 YP_011984.1 CDS DVU2772 NC_002937.3 2879148 2880470 R identified by similarity to OMNI:NTL01TE2295; hypothetical protein complement(2879148..2880470) Desulfovibrio vulgaris str. Hildenborough 2796322 YP_011985.1 CDS DVU2773 NC_002937.3 2880709 2881575 R identified by similarity to OMNI:NTL01TT1359; match to protein family HMM PF02588; hypothetical protein complement(2880709..2881575) Desulfovibrio vulgaris str. Hildenborough 2796323 YP_011986.1 CDS DVU2774 NC_002937.3 2881702 2882385 D identified by match to protein family HMM PF00571; match to protein family HMM PF01842; hypothetical protein 2881702..2882385 Desulfovibrio vulgaris str. Hildenborough 2796324 YP_011987.1 CDS DVU2775 NC_002937.3 2882832 2883107 R hypothetical protein complement(2882832..2883107) Desulfovibrio vulgaris str. Hildenborough 2796325 YP_011988.1 CDS dsvC NC_002937.3 2883462 2883779 D identified by similarity to GP:145087; match to protein family HMM PF04358; dissimilatory sulfite reductase subunit gamma 2883462..2883779 Desulfovibrio vulgaris str. Hildenborough 2796326 YP_011989.1 CDS DVU2777 NC_002937.3 2883976 2884242 R hypothetical protein complement(2883976..2884242) Desulfovibrio vulgaris str. Hildenborough 2796327 YP_011990.1 CDS DVU2778 NC_002937.3 2884308 2884580 R hypothetical protein complement(2884308..2884580) Desulfovibrio vulgaris str. Hildenborough 2796328 YP_011991.1 CDS DVU2779 NC_002937.3 2884963 2886348 R identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547; ABC transporter substrate-binding protein complement(2884963..2886348) Desulfovibrio vulgaris str. Hildenborough 2796329 YP_011992.1 CDS DVU2780 NC_002937.3 2886490 2887365 R identified by similarity to OMNI:NTL01BH1681; match to protein family HMM PF02588; hypothetical protein complement(2886490..2887365) Desulfovibrio vulgaris str. Hildenborough 2796330 YP_011993.1 CDS DVU2781 NC_002937.3 2887759 2888325 R hypothetical protein complement(2887759..2888325) Desulfovibrio vulgaris str. Hildenborough 2796331 YP_011994.1 CDS DVU2782 NC_002937.3 2888408 2888572 R hypothetical protein complement(2888408..2888572) Desulfovibrio vulgaris str. Hildenborough 2796332 YP_011995.1 CDS DVU2783 NC_002937.3 2888557 2889357 R identified by match to protein family HMM PF01925; hypothetical protein complement(2888557..2889357) Desulfovibrio vulgaris str. Hildenborough 2796333 YP_011996.1 CDS DVU2784 NC_002937.3 2889364 2890389 R identified by match to protein family HMM PF01070; FMN-dependent family dehydrogenase complement(2889364..2890389) Desulfovibrio vulgaris str. Hildenborough 2795370 YP_011997.1 CDS DVU2785 NC_002937.3 2890512 2891225 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(2890512..2891225) Desulfovibrio vulgaris str. Hildenborough 2795371 YP_011998.1 CDS DVU2786 NC_002937.3 2891237 2891335 R hypothetical protein complement(2891237..2891335) Desulfovibrio vulgaris str. Hildenborough 2795372 YP_011999.1 CDS DVU2787 NC_002937.3 2891481 2891939 R identified by similarity to OMNI:NTL01NS2107; hypothetical protein complement(2891481..2891939) Desulfovibrio vulgaris str. Hildenborough 2795373 YP_012000.1 CDS DVU2788 NC_002937.3 2891957 2892319 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(2891957..2892319) Desulfovibrio vulgaris str. Hildenborough 2795374 YP_012001.1 CDS DVU2789 NC_002937.3 2892728 2893279 D identified by match to protein family HMM PF01184; Gpr1/Fun34/YaaH family protein 2892728..2893279 Desulfovibrio vulgaris str. Hildenborough 2795375 YP_012002.1 CDS DVU2790 NC_002937.3 2893661 2893801 R hypothetical protein complement(2893661..2893801) Desulfovibrio vulgaris str. Hildenborough 2795376 YP_012003.1 CDS DVU2791 NC_002937.3 2893852 2894631 D cytochrome c family protein 2893852..2894631 Desulfovibrio vulgaris str. Hildenborough 2795377 YP_012004.1 CDS DVU2792 NC_002937.3 2894645 2895850 D identified by similarity to SP:P77611; match to protein family HMM PF00037; electron transport complex protein RnfC 2894645..2895850 Desulfovibrio vulgaris str. Hildenborough 2795378 YP_012005.1 CDS DVU2793 NC_002937.3 2895988 2896944 D identified by match to protein family HMM PF03116; electron transport complex protein RnfD 2895988..2896944 Desulfovibrio vulgaris str. Hildenborough 2795379 YP_012006.1 CDS DVU2794 NC_002937.3 2896947 2897522 D identified by similarity to SP:P58345; match to protein family HMM PF04205; electron transport complex protein RnfG 2896947..2897522 Desulfovibrio vulgaris str. Hildenborough 2795380 YP_012007.1 CDS DVU2795 NC_002937.3 2897534 2898205 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2897534..2898205 Desulfovibrio vulgaris str. Hildenborough 2795381 YP_012008.1 CDS DVU2796 NC_002937.3 2898215 2898790 D identified by similarity to SP:P76181; match to protein family HMM PF02508; electron transport complex protein RnfA 2898215..2898790 Desulfovibrio vulgaris str. Hildenborough 2795382 YP_012009.1 CDS DVU2797 NC_002937.3 2898860 2899747 D involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 2898860..2899747 Desulfovibrio vulgaris str. Hildenborough 2795383 YP_012010.1 CDS DVU2798 NC_002937.3 2899744 2900754 D identified by match to protein family HMM PF02424; match to protein family HMM TIGR01409; ApbE family protein 2899744..2900754 Desulfovibrio vulgaris str. Hildenborough 2795384 YP_012011.1 CDS DVU2799 NC_002937.3 2900849 2901265 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2900849..2901265) Desulfovibrio vulgaris str. Hildenborough 2795385 YP_012012.1 CDS DVU2800 NC_002937.3 2901273 2903174 R identified by similarity to SP:P77894; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; heavy metal translocating P-type ATPase complement(2901273..2903174) Desulfovibrio vulgaris str. Hildenborough 2795386 YP_012013.1 CDS DVU2801 NC_002937.3 2903357 2904691 D hypothetical protein 2903357..2904691 Desulfovibrio vulgaris str. Hildenborough 2795387 YP_012014.1 CDS DVU2802 NC_002937.3 2904939 2905634 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2904939..2905634 Desulfovibrio vulgaris str. Hildenborough 2795388 YP_012015.1 CDS DVU2803 NC_002937.3 2905914 2907323 D hypothetical protein 2905914..2907323 Desulfovibrio vulgaris str. Hildenborough 2795389 YP_012016.1 CDS DVU2804 NC_002937.3 2907340 2908497 D identified by match to protein family HMM TIGR01409; metallo-beta-lactamase 2907340..2908497 Desulfovibrio vulgaris str. Hildenborough 2793765 YP_012017.2 CDS DVU2805 NC_002937.3 2908544 2910490 D identified by match to protein family HMM PF02492; P47K family cobalamin synthesis protein 2908544..2910490 Desulfovibrio vulgaris str. Hildenborough 2793766 YP_012018.1 CDS DVU2806 NC_002937.3 2910477 2911226 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 2910477..2911226 Desulfovibrio vulgaris str. Hildenborough 2793767 YP_012019.1 CDS DVU2807 NC_002937.3 2911246 2911656 D identified by match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 2911246..2911656 Desulfovibrio vulgaris str. Hildenborough 2793768 YP_012020.1 CDS DVU2808 NC_002937.3 2911653 2912162 D identified by similarity to GP:17982262; match to protein family HMM TIGR01352; TonB domain-containing protein 2911653..2912162 Desulfovibrio vulgaris str. Hildenborough 2793769 YP_012021.1 CDS DVU2809 NC_002937.3 2912373 2912807 R identified by similarity to SP:P00133; match to protein family HMM PF02085; cytochrome c3 complement(2912373..2912807) Desulfovibrio vulgaris str. Hildenborough 2793770 YP_012022.2 CDS DVU2810 NC_002937.3 2912822 2913769 R identified by similarity to SP:P13024; formate dehydrogenase formation protein FdhE complement(2912822..2913769) Desulfovibrio vulgaris str. Hildenborough 2793771 YP_012023.1 CDS DVU2811 NC_002937.3 2913843 2914502 R identified by similarity to SP:P24184; formate dehydrogenase subunit beta complement(2913843..2914502) Desulfovibrio vulgaris str. Hildenborough 2793772 YP_012024.1 CDS fdnG-3 NC_002937.3 2914554 2917592 R selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; formate dehydrogenase subunit alpha complement(2914554..2917592) Desulfovibrio vulgaris str. Hildenborough 2793773 YP_012025.1 CDS DVU2813 NC_002937.3 2917842 2917940 R hypothetical protein complement(2917842..2917940) Desulfovibrio vulgaris str. Hildenborough 2793774 YP_012026.1 CDS DVU2814 NC_002937.3 2918182 2918355 R hypothetical protein complement(2918182..2918355) Desulfovibrio vulgaris str. Hildenborough 2793775 YP_012027.1 CDS DVU2815 NC_002937.3 2918385 2919995 R identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux protein complement(2918385..2919995) Desulfovibrio vulgaris str. Hildenborough 2793776 YP_012028.1 CDS DVU2816 NC_002937.3 2920010 2923222 R identified by similarity to SP:P31224; match to protein family HMM PF00873; match to protein family HMM TIGR00915; multidrug resistance protein complement(2920010..2923222) Desulfovibrio vulgaris str. Hildenborough 2793777 YP_012029.1 CDS DVU2817 NC_002937.3 2923238 2924491 R identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; multidrug resistance protein complement(2923238..2924491) Desulfovibrio vulgaris str. Hildenborough 2793778 YP_012030.1 CDS DVU2818 NC_002937.3 2924566 2924784 R hypothetical protein complement(2924566..2924784) Desulfovibrio vulgaris str. Hildenborough 2793779 YP_012031.1 CDS DVU2819 NC_002937.3 2924948 2925556 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2924948..2925556 Desulfovibrio vulgaris str. Hildenborough 2793780 YP_012032.1 CDS DVU2820 NC_002937.3 2925744 2926580 R identified by match to protein family HMM PF04909; amidohydrolase complement(2925744..2926580) Desulfovibrio vulgaris str. Hildenborough 2793781 YP_012033.1 CDS DVU2821 NC_002937.3 2926577 2926798 R hypothetical protein complement(2926577..2926798) Desulfovibrio vulgaris str. Hildenborough 2793782 YP_012034.1 CDS DVU2822 NC_002937.3 2927266 2928276 D identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787; TRAP dicarboxylate family transporter subunit DctP 2927266..2928276 Desulfovibrio vulgaris str. Hildenborough 2793783 YP_012035.1 CDS DVU2823 NC_002937.3 2928486 2930261 D identified by similarity to GP:12722118; match to protein family HMM PF00597; match to protein family HMM PF04290; match to protein family HMM TIGR00786; TRAP transporter subunit DctMQ 2928486..2930261 Desulfovibrio vulgaris str. Hildenborough 2793784 YP_012036.1 CDS DVU2824 NC_002937.3 2930367 2932853 D identified by match to protein family HMM PF01228; match to protein family HMM PF02901; formate acetyltransferase 2930367..2932853 Desulfovibrio vulgaris str. Hildenborough 2793785 YP_012037.1 CDS DVU2825 NC_002937.3 2933030 2933953 D identified by similarity to SP:P09374; similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate-lyase 1 activating enzyme 2933030..2933953 Desulfovibrio vulgaris str. Hildenborough 2796379 YP_012038.1 CDS DVU2826 NC_002937.3 2934002 2934358 D hypothetical protein 2934002..2934358 Desulfovibrio vulgaris str. Hildenborough 2796380 YP_012039.1 CDS DVU2827 NC_002937.3 2934393 2935814 D identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 2934393..2935814 Desulfovibrio vulgaris str. Hildenborough 2796381 YP_012040.1 CDS DVU2828 NC_002937.3 2936472 2937656 D identified by match to protein family HMM PF00589; phage integrase site specific recombinase 2936472..2937656 Desulfovibrio vulgaris str. Hildenborough 2796382 YP_012041.1 CDS DVU2829 NC_002937.3 2937658 2937900 R hypothetical protein complement(2937658..2937900) Desulfovibrio vulgaris str. Hildenborough 2796383 YP_012042.1 CDS DVU2830 NC_002937.3 2937965 2938330 R hypothetical protein complement(2937965..2938330) Desulfovibrio vulgaris str. Hildenborough 2796384 YP_012043.1 CDS DVU2831 NC_002937.3 2938713 2938907 R hypothetical protein complement(2938713..2938907) Desulfovibrio vulgaris str. Hildenborough 2796385 YP_012044.1 CDS DVU2832 NC_002937.3 2938894 2939355 R identified by similarity to GP:4530498; transcriptional regulator cII complement(2938894..2939355) Desulfovibrio vulgaris str. Hildenborough 2796386 YP_012045.1 CDS DVU2833 NC_002937.3 2939513 2939842 D hypothetical protein 2939513..2939842 Desulfovibrio vulgaris str. Hildenborough 2796387 YP_012046.1 CDS DVU2834 NC_002937.3 2939832 2940170 R hypothetical protein complement(2939832..2940170) Desulfovibrio vulgaris str. Hildenborough 2796388 YP_012047.1 CDS DVU2835 NC_002937.3 2940240 2940512 R transcriptional regulator complement(2940240..2940512) Desulfovibrio vulgaris str. Hildenborough 2796389 YP_012048.1 CDS DVU2836 NC_002937.3 2940609 2941055 D hypothetical protein 2940609..2941055 Desulfovibrio vulgaris str. Hildenborough 2796390 YP_012049.1 CDS DVU2837 NC_002937.3 2941168 2942241 D identified by similarity to OMNI:NTL01XC4052; match to protein family HMM PF04313; hypothetical protein 2941168..2942241 Desulfovibrio vulgaris str. Hildenborough 2796391 YP_012050.1 CDS DVU2838 NC_002937.3 2942313 2943650 D identified by similarity to OMNI:NTL02ST1547; hypothetical protein 2942313..2943650 Desulfovibrio vulgaris str. Hildenborough 2796392 YP_012051.1 CDS DVU2839 NC_002937.3 2943651 2944175 D identified by similarity to OMNI:NTL01TA00070; hypothetical protein 2943651..2944175 Desulfovibrio vulgaris str. Hildenborough 2796393 YP_012052.1 CDS DVU2840 NC_002937.3 2944284 2944985 R identified by similarity to OMNI:VCA0483; hypothetical protein complement(2944284..2944985) Desulfovibrio vulgaris str. Hildenborough 2796394 YP_012053.1 CDS DVU2841 NC_002937.3 2944985 2946184 R identified by similarity to SP:P14633; type II restriction endonuclease complement(2944985..2946184) Desulfovibrio vulgaris str. Hildenborough 2796395 YP_012054.1 CDS DVU2842 NC_002937.3 2946324 2947400 D identified by similarity to SP:P11876; match to protein family HMM PF00145; match to protein family HMM TIGR00675; type II DNA modification methyltransferase 2946324..2947400 Desulfovibrio vulgaris str. Hildenborough 2796396 YP_012055.1 CDS DVU2843 NC_002937.3 2947409 2947819 D identified by similarity to SP:P09184; match to protein family HMM PF03852; DNA mismatch endonuclease Vsr 2947409..2947819 Desulfovibrio vulgaris str. Hildenborough 2796397 YP_012056.1 CDS DVU2844 NC_002937.3 2947836 2948699 D hypothetical protein 2947836..2948699 Desulfovibrio vulgaris str. Hildenborough 2795579 YP_012057.1 CDS DVU2845 NC_002937.3 2948707 2949135 D identified by similarity to SP:O07513; match to protein family HMM PF01230; HIT family protein 2948707..2949135 Desulfovibrio vulgaris str. Hildenborough 2795580 YP_012058.1 CDS DVU2846 NC_002937.3 2949141 2949314 D hypothetical protein 2949141..2949314 Desulfovibrio vulgaris str. Hildenborough 2795581 YP_012059.1 CDS DVU2847 NC_002937.3 2949441 2949770 R hypothetical protein complement(2949441..2949770) Desulfovibrio vulgaris str. Hildenborough 2795582 YP_012060.1 CDS DVU2848 NC_002937.3 2949782 2950321 R tail fiber assembly protein complement(2949782..2950321) Desulfovibrio vulgaris str. Hildenborough 2795583 YP_012061.1 CDS DVU2849 NC_002937.3 2950331 2951146 R tail fiber protein complement(2950331..2951146) Desulfovibrio vulgaris str. Hildenborough 2795584 YP_012062.1 CDS DVU2850 NC_002937.3 2951139 2951765 R identified by similarity to GP:19483737; tail protein complement(2951139..2951765) Desulfovibrio vulgaris str. Hildenborough 2795585 YP_012063.1 CDS DVU2851 NC_002937.3 2951774 2952835 R identified by similarity to GP:19483757; tail protein complement(2951774..2952835) Desulfovibrio vulgaris str. Hildenborough 2795586 YP_012064.1 CDS DVU2852 NC_002937.3 2952844 2953320 R identified by similarity to GP:19483756; tail protein complement(2952844..2953320) Desulfovibrio vulgaris str. Hildenborough 2795587 YP_012065.1 CDS DVU2853 NC_002937.3 2953322 2953960 R identified by match to protein family HMM TIGR01644; phage baseplate assembly protein V complement(2953322..2953960) Desulfovibrio vulgaris str. Hildenborough 2795588 YP_012066.1 CDS DVU2854 NC_002937.3 2953962 2955095 R identified by similarity to SP:P08558; tail protein complement(2953962..2955095) Desulfovibrio vulgaris str. Hildenborough 2795589 YP_012067.1 CDS DVU2855 NC_002937.3 2955218 2956417 R identified by similarity to GP:19483753; tail/DNA circulation protein complement(2955218..2956417) Desulfovibrio vulgaris str. Hildenborough 2795590 YP_012068.1 CDS DVU2856 NC_002937.3 2956426 2957916 R identified by similarity to GP:915377; hypothetical protein complement(2956426..2957916) Desulfovibrio vulgaris str. Hildenborough 2795591 YP_012069.1 CDS DVU2857 NC_002937.3 2958116 2958376 R identified by similarity to OMNI:NTL03ST4078; hypothetical protein complement(2958116..2958376) Desulfovibrio vulgaris str. Hildenborough 2795592 YP_012070.1 CDS DVU2858 NC_002937.3 2958376 2958741 R identified by similarity to SP:P79679; tail tube protein complement(2958376..2958741) Desulfovibrio vulgaris str. Hildenborough 2795593 YP_012071.1 CDS DVU2859 NC_002937.3 2958791 2960254 R identified by similarity to SP:P79678; tail sheath protein complement(2958791..2960254) Desulfovibrio vulgaris str. Hildenborough 2795594 YP_012072.1 CDS DVU2860 NC_002937.3 2960258 2960449 R identified by similarity to GP:1834290; hypothetical protein complement(2960258..2960449) Desulfovibrio vulgaris str. Hildenborough 2795595 YP_012073.1 CDS DVU2861 NC_002937.3 2960433 2960990 R hypothetical protein complement(2960433..2960990) Desulfovibrio vulgaris str. Hildenborough 2795596 YP_012074.1 CDS DVU2862 NC_002937.3 2960987 2961313 R hypothetical protein complement(2960987..2961313) Desulfovibrio vulgaris str. Hildenborough 2795597 YP_012075.1 CDS DVU2863 NC_002937.3 2961310 2961903 R hypothetical protein complement(2961310..2961903) Desulfovibrio vulgaris str. Hildenborough 2795598 YP_012076.1 CDS DVU2864 NC_002937.3 2961906 2962049 R hypothetical protein complement(2961906..2962049) Desulfovibrio vulgaris str. Hildenborough 2795599 YP_012077.1 CDS DVU2865 NC_002937.3 2962066 2962476 R lipoprotein complement(2962066..2962476) Desulfovibrio vulgaris str. Hildenborough 2795529 YP_012078.1 CDS DVU2866 NC_002937.3 2962494 2963042 R identified by similarity to GP:6714967; match to protein family HMM PF05838; hypothetical protein complement(2962494..2963042) Desulfovibrio vulgaris str. Hildenborough 2795530 YP_012079.1 CDS DVU2867 NC_002937.3 2963063 2963551 R identified by match to protein family HMM TIGR01593; holin complement(2963063..2963551) Desulfovibrio vulgaris str. Hildenborough 2795531 YP_012080.1 CDS DVU2868 NC_002937.3 2963554 2963901 R hypothetical protein complement(2963554..2963901) Desulfovibrio vulgaris str. Hildenborough 2795532 YP_012081.1 CDS DVU2869 NC_002937.3 2963910 2964914 R identified by match to protein family HMM PF03864; major head protein complement(2963910..2964914) Desulfovibrio vulgaris str. Hildenborough 2795533 YP_012082.1 CDS DVU2870 NC_002937.3 2964926 2965309 R identified by similarity to OMNI:NTL01RS0859; hypothetical protein complement(2964926..2965309) Desulfovibrio vulgaris str. Hildenborough 2795534 YP_012083.1 CDS DVU2871 NC_002937.3 2965319 2966638 R identified by match to protein family HMM PF01343; minor capsid protein C complement(2965319..2966638) Desulfovibrio vulgaris str. Hildenborough 2795535 YP_012084.1 CDS DVU2872 NC_002937.3 2966622 2968322 R identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; lambda family phage portal protein complement(2966622..2968322) Desulfovibrio vulgaris str. Hildenborough 2795536 YP_012085.1 CDS DVU2873 NC_002937.3 2968326 2968601 R hypothetical protein complement(2968326..2968601) Desulfovibrio vulgaris str. Hildenborough 2795537 YP_012086.1 CDS DVU2874 NC_002937.3 2968828 2969256 R hypothetical protein complement(2968828..2969256) Desulfovibrio vulgaris str. Hildenborough 2795538 YP_012087.1 CDS DVU2875 NC_002937.3 2969249 2969467 R identified by match to protein family HMM TIGR01764; DNA-binding protein complement(2969249..2969467) Desulfovibrio vulgaris str. Hildenborough 2795539 YP_012088.1 CDS DVU2876 NC_002937.3 2969464 2971350 R identified by similarity to GP:13361094; terminase large subunit complement(2969464..2971350) Desulfovibrio vulgaris str. Hildenborough 2795540 YP_012089.1 CDS DVU2877 NC_002937.3 2971442 2972164 R hypothetical protein complement(2971442..2972164) Desulfovibrio vulgaris str. Hildenborough 2795541 YP_012090.1 CDS DVU2878 NC_002937.3 2972157 2973515 R identified by match to protein family HMM PF01555; match to protein family HMM PF02195; adenine specific DNA methyltransferase complement(2972157..2973515) Desulfovibrio vulgaris str. Hildenborough 2795542 YP_012091.1 CDS DVU2879 NC_002937.3 2973642 2975198 R identified by similarity to OMNI:CC3049; hypothetical protein complement(2973642..2975198) Desulfovibrio vulgaris str. Hildenborough 2795543 YP_012092.1 CDS DVU2880 NC_002937.3 2975256 2975384 D hypothetical protein 2975256..2975384 Desulfovibrio vulgaris str. Hildenborough 2795544 YP_012093.1 CDS DVU2881 NC_002937.3 2975465 2977150 R identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613; P4 family phage/plasmid primase complement(2975465..2977150) Desulfovibrio vulgaris str. Hildenborough 2795545 YP_012094.1 CDS folC NC_002937.3 2978219 2979715 D identified by similarity to SP:P15925; match to protein family HMM TIGR01499; folylpolyglutamate synthase 2978219..2979715 Desulfovibrio vulgaris str. Hildenborough 2795547 YP_012095.1 CDS selA NC_002937.3 2979887 2981296 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 2979887..2981296 Desulfovibrio vulgaris str. Hildenborough 2795548 YP_012096.1 CDS DVU2884 NC_002937.3 2981355 2982758 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 2981355..2982758 Desulfovibrio vulgaris str. Hildenborough 2795549 YP_012097.1 CDS DVU2885 NC_002937.3 2982927 2984120 D identified by similarity to GP:155577; match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 2982927..2984120 Desulfovibrio vulgaris str. Hildenborough 2793915 YP_012098.1 CDS DVU2886 NC_002937.3 2984227 2985066 D identified by match to protein family HMM PF00165; match to protein family HMM PF02311; AraC family transcriptional regulator 2984227..2985066 Desulfovibrio vulgaris str. Hildenborough 2793916 YP_012099.1 CDS DVU2887 NC_002937.3 2985317 2986285 D identified by similarity to GP:9946975; match to protein family HMM PF00892; hypothetical protein 2985317..2986285 Desulfovibrio vulgaris str. Hildenborough 2793917 YP_012100.1 CDS DVU2888 NC_002937.3 2986467 2987294 R identified by similarity to SP:Q05596; match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein complement(2986467..2987294) Desulfovibrio vulgaris str. Hildenborough 2793918 YP_012101.1 CDS DVU2889 NC_002937.3 2987291 2987839 R identified by match to protein family HMM PF02632; BioY family protein complement(2987291..2987839) Desulfovibrio vulgaris str. Hildenborough 2793919 YP_012102.1 CDS DVU2890 NC_002937.3 2987858 2988736 D hypothetical protein 2987858..2988736 Desulfovibrio vulgaris str. Hildenborough 2793920 YP_012103.1 CDS nikR NC_002937.3 2988755 2989174 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 2988755..2989174 Desulfovibrio vulgaris str. Hildenborough 2793921 YP_012104.2 CDS DVU2892 NC_002937.3 2989179 2989979 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 2989179..2989979 Desulfovibrio vulgaris str. Hildenborough 2793922 YP_012105.1 CDS DVU2893 NC_002937.3 2990027 2990404 D identified by similarity to SP:P75935; match to protein family HMM PF00460; flagellar basal-body rod protein 2990027..2990404 Desulfovibrio vulgaris str. Hildenborough 2793923 YP_012106.1 CDS DVU2894 NC_002937.3 2990682 2991731 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 2990682..2991731 Desulfovibrio vulgaris str. Hildenborough 2793924 YP_012107.1 CDS DVU2895 NC_002937.3 2991759 2992061 D hypothetical protein 2991759..2992061 Desulfovibrio vulgaris str. Hildenborough 2793925 YP_012108.1 CDS DVU2896 NC_002937.3 2992043 2995273 D identified by match to protein family HMM PF00515; hypothetical protein 2992043..2995273 Desulfovibrio vulgaris str. Hildenborough 2793926 YP_012109.1 CDS DVU2897 NC_002937.3 2995616 2996605 D identified by similarity to SP:O67039; match to protein family HMM PF01875; hypothetical protein 2995616..2996605 Desulfovibrio vulgaris str. Hildenborough 2793927 YP_012110.1 CDS DVU2898 NC_002937.3 2996736 2997737 D identified by similarity to OMNI:NTL01MM1125; hypothetical protein 2996736..2997737 Desulfovibrio vulgaris str. Hildenborough 2793928 YP_012111.1 CDS DVU2899 NC_002937.3 2998122 2998982 R hypothetical protein complement(2998122..2998982) Desulfovibrio vulgaris str. Hildenborough 2793929 YP_012112.1 CDS DVU2900 NC_002937.3 2999180 3000379 D identified by match to protein family HMM PF01979; amidohydrolase 2999180..3000379 Desulfovibrio vulgaris str. Hildenborough 2793930 YP_012113.1 CDS pyrB NC_002937.3 3000393 3001346 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 3000393..3001346 Desulfovibrio vulgaris str. Hildenborough 2793931 YP_012114.1 CDS pyrC NC_002937.3 3001346 3002614 D identified by similarity to SP:P25995; match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase 3001346..3002614 Desulfovibrio vulgaris str. Hildenborough 2793932 YP_012115.1 CDS DVU2903 NC_002937.3 3002932 3004260 D HD domain-containing protein 3002932..3004260 Desulfovibrio vulgaris str. Hildenborough 2793933 YP_012116.1 CDS DVU2904 NC_002937.3 3004734 3005828 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 3004734..3005828 Desulfovibrio vulgaris str. Hildenborough 2793934 YP_012117.1 CDS DVU2905 NC_002937.3 3006122 3007300 R identified by similarity to SP:Q04944; match to protein family HMM PF00465; iron-containing alcohol dehydrogenase complement(3006122..3007300) Desulfovibrio vulgaris str. Hildenborough 2793935 YP_012118.1 CDS umuC NC_002937.3 3007579 3008982 R identified by similarity to SP:P04152; match to protein family HMM PF00817; umuC protein complement(3007579..3008982) Desulfovibrio vulgaris str. Hildenborough 2794047 YP_012119.1 CDS umuD NC_002937.3 3009177 3009671 R identified by similarity to SP:P04153; match to protein family HMM PF00717; umuD protein complement(3009177..3009671) Desulfovibrio vulgaris str. Hildenborough 2794048 YP_012120.1 CDS DVU2908 NC_002937.3 3009966 3010718 D hypothetical protein 3009966..3010718 Desulfovibrio vulgaris str. Hildenborough 2794049 YP_012121.1 CDS DVU2909 NC_002937.3 3010822 3011235 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3010822..3011235 Desulfovibrio vulgaris str. Hildenborough 2794050 YP_012122.1 CDS DVU2910 NC_002937.3 3011248 3011853 D identified by similarity to OMNI:NTL01YP1657; match to protein family HMM PF02659; hypothetical protein 3011248..3011853 Desulfovibrio vulgaris str. Hildenborough 2794051 YP_012123.1 CDS DVU2911 NC_002937.3 3012054 3012815 R identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A complement(3012054..3012815) Desulfovibrio vulgaris str. Hildenborough 2794052 YP_012124.1 CDS rpmE NC_002937.3 3013017 3013232 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 3013017..3013232 Desulfovibrio vulgaris str. Hildenborough 2794053 YP_012125.1 CDS DVU2913 NC_002937.3 3013347 3014354 D lipoprotein 3013347..3014354 Desulfovibrio vulgaris str. Hildenborough 2794054 YP_012126.1 CDS prfA NC_002937.3 3014361 3015434 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3014361..3015434 Desulfovibrio vulgaris str. Hildenborough 2794055 YP_012127.1 CDS DVU2915 NC_002937.3 3015745 3015909 D hypothetical protein 3015745..3015909 Desulfovibrio vulgaris str. Hildenborough 2794056 YP_012128.1 CDS hemK NC_002937.3 3016134 3017021 D identified by similarity to SP:P37186; match to protein family HMM TIGR00536; hemK protein 3016134..3017021 Desulfovibrio vulgaris str. Hildenborough 2794057 YP_012129.1 CDS lpxC NC_002937.3 3017229 3018155 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3017229..3018155 Desulfovibrio vulgaris str. Hildenborough 2794058 YP_012130.1 CDS DVU2918 NC_002937.3 3018288 3018524 D hypothetical protein 3018288..3018524 Desulfovibrio vulgaris str. Hildenborough 2794059 YP_012131.1 CDS DVU2919 NC_002937.3 3018487 3019026 R hypothetical protein complement(3018487..3019026) Desulfovibrio vulgaris str. Hildenborough 2794060 YP_012132.1 CDS tuf NC_002937.3 3019503 3020696 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3019503..3020696 Desulfovibrio vulgaris str. Hildenborough 2793957 YP_012133.1 CDS rpmG NC_002937.3 3020701 3020850 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3020701..3020850 Desulfovibrio vulgaris str. Hildenborough 2793958 YP_012134.1 CDS secE NC_002937.3 3020976 3021227 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 3020976..3021227 Desulfovibrio vulgaris str. Hildenborough 2793960 YP_012135.1 CDS nusG NC_002937.3 3021239 3021790 D identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription antitermination protein NusG 3021239..3021790 Desulfovibrio vulgaris str. Hildenborough 2793961 YP_012136.1 CDS rplK NC_002937.3 3021847 3022269 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 3021847..3022269 Desulfovibrio vulgaris str. Hildenborough 2793962 YP_012137.1 CDS rplA NC_002937.3 3022379 3023086 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 3022379..3023086 Desulfovibrio vulgaris str. Hildenborough 2793963 YP_012138.1 CDS rplJ NC_002937.3 3023255 3023776 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 3023255..3023776 Desulfovibrio vulgaris str. Hildenborough 2793964 YP_012139.1 CDS rplL NC_002937.3 3023830 3024213 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 3023830..3024213 Desulfovibrio vulgaris str. Hildenborough 2793965 YP_012140.1 CDS rpoB NC_002937.3 3024679 3028797 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 3024679..3028797 Desulfovibrio vulgaris str. Hildenborough 2793966 YP_012141.1 CDS rpoC NC_002937.3 3028905 3033062 D identified by similarity to SP:P00577; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR01612; DNA-directed RNA polymerase subunit beta' 3028905..3033062 Desulfovibrio vulgaris str. Hildenborough 2793967 YP_012142.1 CDS DVU2930 NC_002937.3 3033771 3034211 D hypothetical protein 3033771..3034211 Desulfovibrio vulgaris str. Hildenborough 2793968 YP_012143.1 CDS DVU2931 NC_002937.3 3034225 3036426 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR01369; sensory box histidine kinase 3034225..3036426 Desulfovibrio vulgaris str. Hildenborough 2793969 YP_012144.1 CDS DVU2932 NC_002937.3 3036460 3037386 D identified by similarity to OMNI:NTL03ST2282; match to protein family HMM TIGR01777; hypothetical protein 3036460..3037386 Desulfovibrio vulgaris str. Hildenborough 2793970 YP_012145.1 CDS DVU2933 NC_002937.3 3037398 3038774 D identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277; response regulator/sensory box/HDIG domain-containing protein 3037398..3038774 Desulfovibrio vulgaris str. Hildenborough 2793971 YP_012146.1 CDS DVU2934 NC_002937.3 3038778 3040196 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 3038778..3040196 Desulfovibrio vulgaris str. Hildenborough 2793972 YP_012147.1 CDS gpmA NC_002937.3 3040354 3041106 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 3040354..3041106 Desulfovibrio vulgaris str. Hildenborough 2793973 YP_012148.1 CDS DVU2936 NC_002937.3 3041186 3041329 R hypothetical protein complement(3041186..3041329) Desulfovibrio vulgaris str. Hildenborough 2793974 YP_012149.1 CDS DVU2937 NC_002937.3 3041307 3042662 D identified by match to protein family HMM PF00072; match to protein family HMM PF00515; TPR domain/response regulator receiver domain-containing protein 3041307..3042662 Desulfovibrio vulgaris str. Hildenborough 2793975 YP_012150.1 CDS DVU2938 NC_002937.3 3042908 3044080 D identified by similarity to OMNI:NTL01NS1696; match to protein family HMM PF01837; hypothetical protein 3042908..3044080 Desulfovibrio vulgaris str. Hildenborough 2793976 YP_012151.1 CDS DVU2939 NC_002937.3 3044106 3044993 D identified by similarity to OMNI:NTL01TE1240; hypothetical protein 3044106..3044993 Desulfovibrio vulgaris str. Hildenborough 2796490 YP_012152.1 CDS DVU2940 NC_002937.3 3045121 3045390 D hypothetical protein 3045121..3045390 Desulfovibrio vulgaris str. Hildenborough 2796491 YP_012153.1 CDS DVU2941 NC_002937.3 3045522 3045821 D identified by similarity to OMNI:NTL01XC2985; hypothetical protein 3045522..3045821 Desulfovibrio vulgaris str. Hildenborough 2796492 YP_012154.1 CDS purB NC_002937.3 3045921 3047213 D identified by similarity to SP:P12047; match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase 3045921..3047213 Desulfovibrio vulgaris str. Hildenborough 2796493 YP_012155.1 CDS pyrE NC_002937.3 3047225 3047785 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR00336; orotate phosphoribosyltransferase 3047225..3047785 Desulfovibrio vulgaris str. Hildenborough 2796494 YP_012156.1 CDS DVU2944 NC_002937.3 3047845 3049134 D identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 3047845..3049134 Desulfovibrio vulgaris str. Hildenborough 2796495 YP_012157.1 CDS DVU2945 NC_002937.3 3049173 3050030 D identified by similarity to GP:13926258; hypothetical protein 3049173..3050030 Desulfovibrio vulgaris str. Hildenborough 2796496 YP_012158.1 CDS DVU2946 NC_002937.3 3050421 3050663 R hypothetical protein complement(3050421..3050663) Desulfovibrio vulgaris str. Hildenborough 2796497 YP_012159.1 CDS DVU2947 NC_002937.3 3050747 3052816 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(3050747..3052816) Desulfovibrio vulgaris str. Hildenborough 2796498 YP_012160.1 CDS DVU2948 NC_002937.3 3053486 3054334 D identified by match to protein family HMM PF00669; flagellin N-terminal domain-containing protein 3053486..3054334 Desulfovibrio vulgaris str. Hildenborough 2796499 YP_012161.1 CDS DVU2949 NC_002937.3 3054538 3054891 D identified by similarity to OMNI:NTL01SM01900; match to protein family HMM PF04342; hypothetical protein 3054538..3054891 Desulfovibrio vulgaris str. Hildenborough 2796500 YP_012162.1 CDS glnS NC_002937.3 3056772 3058484 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3056772..3058484 Desulfovibrio vulgaris str. Hildenborough 2796502 YP_012163.1 CDS DVU2952 NC_002937.3 3058744 3059781 R identified by similarity to OMNI:NTL01PF2043; match to protein family HMM PF00892; hypothetical protein complement(3058744..3059781) Desulfovibrio vulgaris str. Hildenborough 2796503 YP_012164.1 CDS DVU2953 NC_002937.3 3060107 3061669 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 3060107..3061669 Desulfovibrio vulgaris str. Hildenborough 2796504 YP_012165.1 CDS DVU2954 NC_002937.3 3062063 3063742 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 3062063..3063742 Desulfovibrio vulgaris str. Hildenborough 2796507 YP_012166.1 CDS DVU2955 NC_002937.3 3063944 3064087 R hypothetical protein complement(3063944..3064087) Desulfovibrio vulgaris str. Hildenborough 2796508 YP_012167.1 CDS DVU2956 NC_002937.3 3064162 3065199 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator complement(3064162..3065199) Desulfovibrio vulgaris str. Hildenborough 2796270 YP_012168.1 CDS DVU2957 NC_002937.3 3065309 3065449 D hypothetical protein 3065309..3065449 Desulfovibrio vulgaris str. Hildenborough 2796271 YP_012169.1 CDS DVU2958 NC_002937.3 3065446 3066444 D identified by match to protein family HMM PF01925; hypothetical protein 3065446..3066444 Desulfovibrio vulgaris str. Hildenborough 2796272 YP_012170.1 CDS DVU2959 NC_002937.3 3066457 3066873 D identified by similarity to SP:O28710; hypothetical protein 3066457..3066873 Desulfovibrio vulgaris str. Hildenborough 2796273 YP_012171.1 CDS DVU2960 NC_002937.3 3066958 3068382 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 3066958..3068382 Desulfovibrio vulgaris str. Hildenborough 2796274 YP_012172.1 CDS DVU2961 NC_002937.3 3068386 3068733 D hypothetical protein 3068386..3068733 Desulfovibrio vulgaris str. Hildenborough 2796275 YP_012173.1 CDS DVU2962 NC_002937.3 3068730 3070463 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 3068730..3070463 Desulfovibrio vulgaris str. Hildenborough 2796276 YP_012174.1 CDS DVU2963 NC_002937.3 3070467 3070853 D identified by match to protein family HMM PF00072; response regulator 3070467..3070853 Desulfovibrio vulgaris str. Hildenborough 2796277 YP_012175.1 CDS DVU2964 NC_002937.3 3070855 3071514 D hypothetical protein 3070855..3071514 Desulfovibrio vulgaris str. Hildenborough 2796278 YP_012176.1 CDS DVU2965 NC_002937.3 3071634 3071933 D hypothetical protein 3071634..3071933 Desulfovibrio vulgaris str. Hildenborough 2796279 YP_012177.1 CDS DVU2966 NC_002937.3 3072132 3072587 D identified by match to protein family HMM PF00072; response regulator 3072132..3072587 Desulfovibrio vulgaris str. Hildenborough 2796280 YP_012178.1 CDS DVU2967 NC_002937.3 3072601 3073725 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 3072601..3073725 Desulfovibrio vulgaris str. Hildenborough 2796281 YP_012179.1 CDS DVU2968 NC_002937.3 3073821 3075017 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator complement(3073821..3075017) Desulfovibrio vulgaris str. Hildenborough 2796282 YP_012180.1 CDS DVU2969 NC_002937.3 3075266 3077251 R identified by similarity to SP:P27550; match to protein family HMM PF00501; acetoacetyl-CoA synthase complement(3075266..3077251) Desulfovibrio vulgaris str. Hildenborough 2796283 YP_012181.1 CDS DVU2970 NC_002937.3 3077476 3080172 D identified by match to protein family HMM PF00583; match to protein family HMM PF02629; match to protein family HMM TIGR01369; acetyltransferase 3077476..3080172 Desulfovibrio vulgaris str. Hildenborough 2796284 YP_012182.1 CDS DVU2971 NC_002937.3 3080514 3081425 R identified by match to protein family HMM PF01501; glycosyl transferase family protein complement(3080514..3081425) Desulfovibrio vulgaris str. Hildenborough 2796285 YP_012183.1 CDS DVU2972 NC_002937.3 3081579 3082178 R chemotaxis protein CheD complement(3081579..3082178) Desulfovibrio vulgaris str. Hildenborough 2796286 YP_012184.1 CDS DVU2973 NC_002937.3 3082212 3082487 R identified by similarity to SP:Q06607; match to protein family HMM PF00216; integration host factor subunit beta complement(3082212..3082487) Desulfovibrio vulgaris str. Hildenborough 2796287 YP_012185.1 CDS DVU2974 NC_002937.3 3082568 3082747 R hypothetical protein complement(3082568..3082747) Desulfovibrio vulgaris str. Hildenborough 2796288 YP_012186.1 CDS DVU2975 NC_002937.3 3082753 3083793 R identified by match to protein family HMM PF04307; hydrolase complement(3082753..3083793) Desulfovibrio vulgaris str. Hildenborough 2796289 YP_012187.1 CDS DVU2976 NC_002937.3 3084007 3085119 R identified by similarity to OMNI:NT01MC0831; match to protein family HMM PF04463; hypothetical protein complement(3084007..3085119) Desulfovibrio vulgaris str. Hildenborough 2796290 YP_012188.1 CDS DVU2977 NC_002937.3 3085118 3085288 D hypothetical protein 3085118..3085288 Desulfovibrio vulgaris str. Hildenborough 2796291 YP_012189.1 CDS DVU2978 NC_002937.3 3085457 3086089 D identified by similarity to OMNI:NTL02EC4785; match to protein family HMM PF00702; HAD superfamily hydrolase 3085457..3086089 Desulfovibrio vulgaris str. Hildenborough 2796292 YP_012190.1 CDS DVU2979 NC_002937.3 3086199 3086852 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 3086199..3086852 Desulfovibrio vulgaris str. Hildenborough 2796293 YP_012191.1 CDS pssA NC_002937.3 3086915 3087664 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 3086915..3087664 Desulfovibrio vulgaris str. Hildenborough 2796294 YP_012192.1 CDS leuA NC_002937.3 3087841 3089370 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 3087841..3089370 Desulfovibrio vulgaris str. Hildenborough 2796295 YP_012193.1 CDS DVU2982 NC_002937.3 3089372 3090631 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 3089372..3090631 Desulfovibrio vulgaris str. Hildenborough 2796296 YP_012194.1 CDS leuD NC_002937.3 3090649 3091152 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit 3090649..3091152 Desulfovibrio vulgaris str. Hildenborough 2796297 YP_012195.1 CDS DVU2984 NC_002937.3 3091155 3092162 D identified by similarity to OMNI:NTL01AA00614; match to protein family HMM PF01937; hypothetical protein 3091155..3092162 Desulfovibrio vulgaris str. Hildenborough 2796298 YP_012196.1 CDS leuB NC_002937.3 3092192 3093265 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3092192..3093265 Desulfovibrio vulgaris str. Hildenborough 2796299 YP_012197.1 CDS pspC NC_002937.3 3093874 3094296 R identified by similarity to SP:P23855; match to protein family HMM PF04024; phage shock protein C complement(3093874..3094296) Desulfovibrio vulgaris str. Hildenborough 2796300 YP_012198.1 CDS DVU2987 NC_002937.3 3094293 3094592 R hypothetical protein complement(3094293..3094592) Desulfovibrio vulgaris str. Hildenborough 2796301 YP_012199.1 CDS pspA NC_002937.3 3094671 3095336 R identified by match to protein family HMM PF04012; phage shock protein A complement(3094671..3095336) Desulfovibrio vulgaris str. Hildenborough 2796302 YP_012200.1 CDS pspF NC_002937.3 3095502 3096647 D identified by similarity to SP:P37344; match to protein family HMM PF00158; match to protein family HMM TIGR01199; psp operon transcriptional activator 3095502..3096647 Desulfovibrio vulgaris str. Hildenborough 2796303 YP_012201.1 CDS moeA NC_002937.3 3096677 3098629 D identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein 3096677..3098629 Desulfovibrio vulgaris str. Hildenborough 2796304 YP_012202.1 CDS DVU2991 NC_002937.3 3098789 3099880 D hypothetical protein 3098789..3099880 Desulfovibrio vulgaris str. Hildenborough 2796305 YP_012203.1 CDS DVU2992 NC_002937.3 3099901 3101517 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 3099901..3101517 Desulfovibrio vulgaris str. Hildenborough 2796306 YP_012204.1 CDS DVU2993 NC_002937.3 3101540 3104203 D identified by match to protein family HMM PF00534; match to protein family HMM PF00535; glycosyl transferase group 1/2 family protein 3101540..3104203 Desulfovibrio vulgaris str. Hildenborough 2796307 YP_012205.1 CDS DVU2994 NC_002937.3 3104200 3105228 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 3104200..3105228 Desulfovibrio vulgaris str. Hildenborough 2796308 YP_012206.1 CDS DVU2995 NC_002937.3 3105499 3106662 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(3105499..3106662) Desulfovibrio vulgaris str. Hildenborough 2796309 YP_012207.1 CDS DVU2996 NC_002937.3 3106817 3107740 R identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase complement(3106817..3107740) Desulfovibrio vulgaris str. Hildenborough 2796310 YP_012208.1 CDS DVU2997 NC_002937.3 3107742 3108518 R hypothetical protein complement(3107742..3108518) Desulfovibrio vulgaris str. Hildenborough 2796311 YP_012209.1 CDS DVU2998 NC_002937.3 3108548 3109882 R hypothetical protein complement(3108548..3109882) Desulfovibrio vulgaris str. Hildenborough 2796312 YP_012210.1 CDS DVU2999 NC_002937.3 3109908 3110735 R identified by match to protein family HMM PF00551; methionyl-tRNA formyltransferase complement(3109908..3110735) Desulfovibrio vulgaris str. Hildenborough 2796313 YP_012211.1 CDS DVU3000 NC_002937.3 3110900 3112090 R hypothetical protein complement(3110900..3112090) Desulfovibrio vulgaris str. Hildenborough 2793713 YP_012212.1 CDS DVU3001 NC_002937.3 3112087 3112884 R identified by similarity to OMNI:CC3255; hypothetical protein complement(3112087..3112884) Desulfovibrio vulgaris str. Hildenborough 2793714 YP_012213.1 CDS DVU3002 NC_002937.3 3112881 3114029 R hypothetical protein complement(3112881..3114029) Desulfovibrio vulgaris str. Hildenborough 2793715 YP_012214.1 CDS DVU3003 NC_002937.3 3114085 3115197 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(3114085..3115197) Desulfovibrio vulgaris str. Hildenborough 2793716 YP_012215.1 CDS DVU3004 NC_002937.3 3115376 3117250 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3115376..3117250 Desulfovibrio vulgaris str. Hildenborough 2793717 YP_012216.1 CDS DVU3005 NC_002937.3 3117261 3118295 D identified by match to protein family HMM PF01041; aminotransferase 3117261..3118295 Desulfovibrio vulgaris str. Hildenborough 2793718 YP_012217.1 CDS DVU3006 NC_002937.3 3118306 3119667 D identified by similarity to SP:P39626; similarity to GP:10179847; match to protein family HMM PF02348; polysaccharide biosynthesis protein/methyltransferase 3118306..3119667 Desulfovibrio vulgaris str. Hildenborough 2793719 YP_012218.1 CDS DVU3007 NC_002937.3 3119670 3120893 D hypothetical protein 3119670..3120893 Desulfovibrio vulgaris str. Hildenborough 2793720 YP_012219.1 CDS DVU3008 NC_002937.3 3120890 3121966 D identified by match to protein family HMM PF03102; NeuB family protein 3120890..3121966 Desulfovibrio vulgaris str. Hildenborough 2793721 YP_012220.1 CDS DVU3009 NC_002937.3 3121963 3122946 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3121963..3122946 Desulfovibrio vulgaris str. Hildenborough 2793722 YP_012221.1 CDS DVU3010 NC_002937.3 3122956 3124134 D identified by similarity to GP:22095313; match to protein family HMM PF01041; aminotransferase 3122956..3124134 Desulfovibrio vulgaris str. Hildenborough 2793723 YP_012222.1 CDS DVU3011 NC_002937.3 3124139 3124933 D identified by similarity to OMNI:CC2858; hypothetical protein 3124139..3124933 Desulfovibrio vulgaris str. Hildenborough 2793724 YP_012223.1 CDS DVU3012 NC_002937.3 3125034 3126833 D hypothetical protein 3125034..3126833 Desulfovibrio vulgaris str. Hildenborough 2793725 YP_012224.1 CDS DVU3013 NC_002937.3 3126886 3128592 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 3126886..3128592 Desulfovibrio vulgaris str. Hildenborough 2793726 YP_012225.1 CDS DVU3014 NC_002937.3 3128580 3130673 D identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthetase 3128580..3130673 Desulfovibrio vulgaris str. Hildenborough 2793727 YP_012226.1 CDS DVU3015 NC_002937.3 3130655 3131221 D identified by similarity to OMNI:NT01MC1323; hypothetical protein 3130655..3131221 Desulfovibrio vulgaris str. Hildenborough 2793728 YP_012227.1 CDS DVU3016 NC_002937.3 3131336 3132781 R identified by match to protein family HMM PF02310; match to protein family HMM PF04055; B12 binding /radical SAM domain-containing protein complement(3131336..3132781) Desulfovibrio vulgaris str. Hildenborough 2793729 YP_012228.2 CDS DVU3017 NC_002937.3 3132813 3133844 R identified by similarity to OMNI:CT0759; hypothetical protein complement(3132813..3133844) Desulfovibrio vulgaris str. Hildenborough 2793730 YP_012229.1 CDS DVU3018 NC_002937.3 3133841 3134974 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(3133841..3134974) Desulfovibrio vulgaris str. Hildenborough 2793731 YP_012230.1 CDS DVU3019 NC_002937.3 3135056 3136513 R identified by similarity to SP:O58549; match to protein family HMM PF02310; match to protein family HMM PF04055; radical SAM protein complement(3135056..3136513) Desulfovibrio vulgaris str. Hildenborough 2793732 YP_012231.1 CDS DVU3020 NC_002937.3 3136549 3136917 R hypothetical protein complement(3136549..3136917) Desulfovibrio vulgaris str. Hildenborough 2793733 YP_012232.1 CDS DVU3021 NC_002937.3 3137085 3138455 R identified by match to protein family HMM PF01966; HDIG domain-containing protein complement(3137085..3138455) Desulfovibrio vulgaris str. Hildenborough 2793734 YP_012233.1 CDS DVU3022 NC_002937.3 3138517 3141936 D identified by similarity to OMNI:NTL01SMA00507; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 3138517..3141936 Desulfovibrio vulgaris str. Hildenborough 2793735 YP_012234.1 CDS DVU3023 NC_002937.3 3141933 3143357 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 3141933..3143357 Desulfovibrio vulgaris str. Hildenborough 2796440 YP_012235.1 CDS DVU3024 NC_002937.3 3143615 3143782 D hypothetical protein 3143615..3143782 Desulfovibrio vulgaris str. Hildenborough 2796441 YP_012236.1 CDS poR NC_002937.3 3143767 3147414 D identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate-ferredoxin oxidoreductase 3143767..3147414 Desulfovibrio vulgaris str. Hildenborough 2796442 YP_012237.1 CDS DVU3026 NC_002937.3 3147520 3149232 D identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 3147520..3149232 Desulfovibrio vulgaris str. Hildenborough 2796443 YP_012238.1 CDS glcD NC_002937.3 3149407 3150792 D identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 3149407..3150792 Desulfovibrio vulgaris str. Hildenborough 2796444 YP_012239.1 CDS DVU3028 NC_002937.3 3150824 3152092 D identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding protein 3150824..3152092 Desulfovibrio vulgaris str. Hildenborough 2796445 YP_012240.1 CDS pta NC_002937.3 3152216 3154330 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 3152216..3154330 Desulfovibrio vulgaris str. Hildenborough 2796446 YP_012241.1 CDS ackA NC_002937.3 3154356 3155564 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 3154356..3155564 Desulfovibrio vulgaris str. Hildenborough 2796447 YP_012242.1 CDS DVU3031 NC_002937.3 3155664 3156755 D identified by similarity to OMNI:NTL01HS00726; hypothetical protein 3155664..3156755 Desulfovibrio vulgaris str. Hildenborough 2796448 YP_012243.1 CDS DVU3032 NC_002937.3 3156752 3157381 D identified by similarity to OMNI:HP0137; match to protein family HMM PF02589; hypothetical protein 3156752..3157381 Desulfovibrio vulgaris str. Hildenborough 2796449 YP_012244.1 CDS DVU3033 NC_002937.3 3157385 3159538 D identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding protein 3157385..3159538 Desulfovibrio vulgaris str. Hildenborough 2796450 YP_012245.1 CDS DVU3034 NC_002937.3 3159611 3159712 R hypothetical protein complement(3159611..3159712) Desulfovibrio vulgaris str. Hildenborough 2796451 YP_012246.2 CDS DVU3035 NC_002937.3 3159730 3161541 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 3159730..3161541 Desulfovibrio vulgaris str. Hildenborough 2796452 YP_012247.1 CDS DVU3036 NC_002937.3 3161724 3162716 R identified by similarity to OMNI:NTL01SS01164; match to protein family HMM PF04015; hypothetical protein complement(3161724..3162716) Desulfovibrio vulgaris str. Hildenborough 2796453 YP_012248.1 CDS DVU3037 NC_002937.3 3162817 3163689 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(3162817..3163689) Desulfovibrio vulgaris str. Hildenborough 2796454 YP_012249.1 CDS DVU3038 NC_002937.3 3163688 3163792 D hypothetical protein 3163688..3163792 Desulfovibrio vulgaris str. Hildenborough 2796455 YP_012250.1 CDS DVU3039 NC_002937.3 3164143 3164868 R identified by similarity to GP:9949385; hypothetical protein complement(3164143..3164868) Desulfovibrio vulgaris str. Hildenborough 2796457 YP_012251.1 CDS DVU3040 NC_002937.3 3164991 3165224 R hypothetical protein complement(3164991..3165224) Desulfovibrio vulgaris str. Hildenborough 2796458 YP_012252.1 CDS DVU3041 NC_002937.3 3165232 3165513 D identified by similarity to SP:P00120; match to protein family HMM PF00034; cytochrome c553 3165232..3165513 Desulfovibrio vulgaris str. Hildenborough 2796459 YP_012253.1 CDS DVU3042 NC_002937.3 3165553 3165789 D identified by match to protein family HMM PF06004; lipoprotein 3165553..3165789 Desulfovibrio vulgaris str. Hildenborough 2796460 YP_012254.1 CDS DVU3043 NC_002937.3 3166018 3167049 D hypothetical protein 3166018..3167049 Desulfovibrio vulgaris str. Hildenborough 2796461 YP_012255.1 CDS DVU3044 NC_002937.3 3167178 3168059 R hypothetical protein complement(3167178..3168059) Desulfovibrio vulgaris str. Hildenborough 2796070 YP_012256.1 CDS DVU3045 NC_002937.3 3168343 3171210 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 3168343..3171210 Desulfovibrio vulgaris str. Hildenborough 2796071 YP_012257.1 CDS DVU3046 NC_002937.3 3171427 3172533 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(3171427..3172533) Desulfovibrio vulgaris str. Hildenborough 2796072 YP_012258.1 CDS DVU3047 NC_002937.3 3173003 3173950 R identified by match to protein family HMM PF01063; class IV aminotransferase complement(3173003..3173950) Desulfovibrio vulgaris str. Hildenborough 2796073 YP_012259.1 CDS asd NC_002937.3 3174209 3175258 R identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase complement(3174209..3175258) Desulfovibrio vulgaris str. Hildenborough 2796074 YP_012260.1 CDS DVU3049 NC_002937.3 3175305 3175718 R hemerythrin family protein complement(3175305..3175718) Desulfovibrio vulgaris str. Hildenborough 2796075 YP_012261.1 CDS DVU3050 NC_002937.3 3175842 3176276 R identified by match to protein family HMM PF04657; hypothetical protein complement(3175842..3176276) Desulfovibrio vulgaris str. Hildenborough 2796076 YP_012262.1 CDS mutT NC_002937.3 3176498 3176887 R identified by similarity to SP:P08337; match to protein family HMM PF00293; mutator mutT protein complement(3176498..3176887) Desulfovibrio vulgaris str. Hildenborough 2796077 YP_012263.1 CDS DVU3052 NC_002937.3 3176887 3178866 R identified by similarity to SP:P45535; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3176887..3178866) Desulfovibrio vulgaris str. Hildenborough 2796078 YP_012264.1 CDS DVU3053 NC_002937.3 3179101 3179994 R hypothetical protein complement(3179101..3179994) Desulfovibrio vulgaris str. Hildenborough 2796079 YP_012265.1 CDS DVU3054 NC_002937.3 3180365 3181459 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3180365..3181459 Desulfovibrio vulgaris str. Hildenborough 2796080 YP_012266.1 CDS DVU3055 NC_002937.3 3181505 3182974 D identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease 3181505..3182974 Desulfovibrio vulgaris str. Hildenborough 2796081 YP_012267.1 CDS DVU3056 NC_002937.3 3182977 3183630 D identified by similarity to OMNI:TM0731; hypothetical protein 3182977..3183630 Desulfovibrio vulgaris str. Hildenborough 2796082 YP_012268.1 CDS DVU3057 NC_002937.3 3183675 3185168 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR00539; oxygen-independent coproporphyrinogen III oxidase 3183675..3185168 Desulfovibrio vulgaris str. Hildenborough 2796083 YP_012269.1 CDS DVU3058 NC_002937.3 3185165 3188836 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 3185165..3188836 Desulfovibrio vulgaris str. Hildenborough 2796084 YP_012270.1 CDS ftsY NC_002937.3 3189021 3190487 R identified by similarity to SP:P10121; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY complement(3189021..3190487) Desulfovibrio vulgaris str. Hildenborough 2796085 YP_012271.1 CDS DVU3060 NC_002937.3 3190466 3190630 R hypothetical protein complement(3190466..3190630) Desulfovibrio vulgaris str. Hildenborough 2796086 YP_012272.1 CDS DVU3061 NC_002937.3 3190672 3192966 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 3190672..3192966 Desulfovibrio vulgaris str. Hildenborough 2796087 YP_012273.1 CDS DVU3062 NC_002937.3 3193322 3196564 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase/response regulator complement(3193322..3196564) Desulfovibrio vulgaris str. Hildenborough 2796088 YP_012274.1 CDS mviN-2 NC_002937.3 3196686 3198374 R identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN complement(3196686..3198374) Desulfovibrio vulgaris str. Hildenborough 2796089 YP_012275.1 CDS DVU3064 NC_002937.3 3198740 3200470 D identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 3198740..3200470 Desulfovibrio vulgaris str. Hildenborough 2796090 YP_012276.1 CDS DVU3065 NC_002937.3 3200598 3202250 R activates fatty acids by binding to coenzyme A; AMP-binding protein complement(3200598..3202250) Desulfovibrio vulgaris str. Hildenborough 2796091 YP_012277.1 CDS DVU3066 NC_002937.3 3202265 3202834 R identified by match to protein family HMM PF01381; DNA-binding protein complement(3202265..3202834) Desulfovibrio vulgaris str. Hildenborough 2796417 YP_012278.1 CDS hypF NC_002937.3 3202929 3205448 D identified by similarity to SP:O07451; match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 3202929..3205448 Desulfovibrio vulgaris str. Hildenborough 2796418 YP_012279.1 CDS DVU3068 NC_002937.3 3205678 3208161 D identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; GAF domain/sensory box/EAL domain-containing protein 3205678..3208161 Desulfovibrio vulgaris str. Hildenborough 2796419 YP_012280.1 CDS DVU3069 NC_002937.3 3208579 3209901 R identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein complement(3208579..3209901) Desulfovibrio vulgaris str. Hildenborough 2796420 YP_012281.1 CDS DVU3070 NC_002937.3 3209898 3210326 R identified by similarity to OMNI:NMB1337; match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein complement(3209898..3210326) Desulfovibrio vulgaris str. Hildenborough 2796421 YP_012282.1 CDS DVU3071 NC_002937.3 3210408 3213971 R identified by similarity to SP:P52075; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913; oxidoreductase complement(3210408..3213971) Desulfovibrio vulgaris str. Hildenborough 2796422 YP_012283.1 CDS DVU3072 NC_002937.3 3214138 3216072 R identified by similarity to SP:P76224; match to protein family HMM PF00528; ABC transporter permease complement(3214138..3216072) Desulfovibrio vulgaris str. Hildenborough 2796423 YP_012284.1 CDS DVU3073 NC_002937.3 3216311 3217222 D identified by similarity to OMNI:HI1195; hypothetical protein 3216311..3217222 Desulfovibrio vulgaris str. Hildenborough 2796424 YP_012285.1 CDS DVU3074 NC_002937.3 3217533 3218420 R identified by similarity to OMNI:VC0081; match to protein family HMM PF00892; hypothetical protein complement(3217533..3218420) Desulfovibrio vulgaris str. Hildenborough 2796425 YP_012286.1 CDS DVU3075 NC_002937.3 3218488 3218760 D hypothetical protein 3218488..3218760 Desulfovibrio vulgaris str. Hildenborough 2796426 YP_012287.1 CDS DVU3076 NC_002937.3 3218992 3219573 D identified by similarity to OMNI:NTL01OI0852; hypothetical protein 3218992..3219573 Desulfovibrio vulgaris str. Hildenborough 2796427 YP_012288.1 CDS DVU3077 NC_002937.3 3220001 3220762 D identified by match to protein family HMM PF00578; AhpC/TSA family protein 3220001..3220762 Desulfovibrio vulgaris str. Hildenborough 2796428 YP_012289.1 CDS DVU3078 NC_002937.3 3221253 3221465 R hypothetical protein complement(3221253..3221465) Desulfovibrio vulgaris str. Hildenborough 2796429 YP_012290.1 CDS DVU3079 NC_002937.3 3221509 3222111 D identified by match to protein family HMM PF00903; glyoxalase 3221509..3222111 Desulfovibrio vulgaris str. Hildenborough 2796430 YP_012291.1 CDS DVU3080 NC_002937.3 3222373 3222771 D identified by similarity to SP:P55323; transcriptional regulator 3222373..3222771 Desulfovibrio vulgaris str. Hildenborough 2796431 YP_012292.1 CDS DVU3081 NC_002937.3 3223039 3223941 D identified by similarity to GP:9946975; match to protein family HMM PF00892; hypothetical protein 3223039..3223941 Desulfovibrio vulgaris str. Hildenborough 2796432 YP_012293.1 CDS DVU3082 NC_002937.3 3224282 3226045 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(3224282..3226045) Desulfovibrio vulgaris str. Hildenborough 2796433 YP_012294.1 CDS DVU3083 NC_002937.3 3226286 3226462 D hypothetical protein 3226286..3226462 Desulfovibrio vulgaris str. Hildenborough 2796434 YP_012295.1 CDS DVU3084 NC_002937.3 3226516 3226902 R identified by similarity to SP:Q04152; transcriptional regulator complement(3226516..3226902) Desulfovibrio vulgaris str. Hildenborough 2796435 YP_012296.1 CDS DVU3085 NC_002937.3 3227074 3227319 D hypothetical protein 3227074..3227319 Desulfovibrio vulgaris str. Hildenborough 2796436 YP_012297.1 CDS cobB-2 NC_002937.3 3227312 3229135 D identified by match to protein family HMM PF01656; match to protein family HMM TIGR00379; cobyrinic acid a,c-diamide synthase 3227312..3229135 Desulfovibrio vulgaris str. Hildenborough 2796437 YP_012298.1 CDS cobH NC_002937.3 3229144 3229785 D identified by similarity to GP:15826199; match to protein family HMM PF02570; precorrin-8X methylmutase 3229144..3229785 Desulfovibrio vulgaris str. Hildenborough 2796438 YP_012299.1 CDS DVU3088 NC_002937.3 3229894 3231627 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 3229894..3231627 Desulfovibrio vulgaris str. Hildenborough 2796439 YP_012300.1 CDS DVU3089 NC_002937.3 3231596 3232102 D hypothetical protein 3231596..3232102 Desulfovibrio vulgaris str. Hildenborough 2795961 YP_012301.1 CDS DVU3090 NC_002937.3 3232587 3233792 R identified by match to protein family HMM PF03349; OMPP1/FadL/TodX family outer membrane protein complement(3232587..3233792) Desulfovibrio vulgaris str. Hildenborough 2795962 YP_012302.1 CDS DVU3091 NC_002937.3 3234266 3235612 D identified by similarity to SP:Q9A4C3; hypothetical protein 3234266..3235612 Desulfovibrio vulgaris str. Hildenborough 2795963 YP_012303.1 CDS DVU3092 NC_002937.3 3235827 3236474 D hypothetical protein 3235827..3236474 Desulfovibrio vulgaris str. Hildenborough 2795964 YP_012304.1 CDS rdl NC_002937.3 3236518 3236745 R identified by match to protein family HMM PF00301; rubredoxin-like protein complement(3236518..3236745) Desulfovibrio vulgaris str. Hildenborough 2795965 YP_012305.1 CDS rr NC_002937.3 3236764 3237339 R identified by similarity to SP:P24931; match to protein family HMM PF02915; rubrerythrin complement(3236764..3237339) Desulfovibrio vulgaris str. Hildenborough 2795966 YP_012306.1 CDS DVU3095 NC_002937.3 3237384 3237770 R identified by match to protein family HMM PF01475; Fur family transcriptional regulator complement(3237384..3237770) Desulfovibrio vulgaris str. Hildenborough 2795967 YP_012307.1 CDS DVU3096 NC_002937.3 3237800 3238051 R hypothetical protein complement(3237800..3238051) Desulfovibrio vulgaris str. Hildenborough 2795968 YP_012308.1 CDS DVU3097 NC_002937.3 3238096 3239415 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(3238096..3239415) Desulfovibrio vulgaris str. Hildenborough 2795969 YP_012309.1 CDS DVU3098 NC_002937.3 3239552 3239755 D hypothetical protein 3239552..3239755 Desulfovibrio vulgaris str. Hildenborough 2795970 YP_012310.1 CDS tolQ-2 NC_002937.3 3239799 3240491 D identified by similarity to SP:P05828; match to protein family HMM PF01618; tolQ protein 3239799..3240491 Desulfovibrio vulgaris str. Hildenborough 2795971 YP_012311.1 CDS DVU3100 NC_002937.3 3240501 3240920 D identified by match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 3240501..3240920 Desulfovibrio vulgaris str. Hildenborough 2795972 YP_012312.1 CDS DVU3101 NC_002937.3 3240930 3241955 D identified by similarity to GP:14595286; match to protein family HMM TIGR01352; tonB protein 3240930..3241955 Desulfovibrio vulgaris str. Hildenborough 2795973 YP_012313.1 CDS DVU3102 NC_002937.3 3242061 3242648 D hypothetical protein 3242061..3242648 Desulfovibrio vulgaris str. Hildenborough 2795974 YP_012314.1 CDS DVU3103 NC_002937.3 3242725 3244095 D tolB protein 3242725..3244095 Desulfovibrio vulgaris str. Hildenborough 2795975 YP_012315.1 CDS DVU3104 NC_002937.3 3244295 3244798 D identified by similarity to SP:P07176; match to protein family HMM PF00691; peptidoglycan-associated lipoprotein 3244295..3244798 Desulfovibrio vulgaris str. Hildenborough 2795976 YP_012316.1 CDS DVU3105 NC_002937.3 3252382 3252507 D hypothetical protein 3252382..3252507 Desulfovibrio vulgaris str. Hildenborough 2796597 YP_012317.1 CDS DVU3106 NC_002937.3 3252660 3254627 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(3252660..3254627) Desulfovibrio vulgaris str. Hildenborough 2796598 YP_012318.1 CDS DVU3107 NC_002937.3 3254902 3256671 D identified by match to protein family HMM PF00034; cytochrome c family protein 3254902..3256671 Desulfovibrio vulgaris str. Hildenborough 2796599 YP_012319.1 CDS nhaC-2 NC_002937.3 3256819 3258246 R identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC complement(3256819..3258246) Desulfovibrio vulgaris str. Hildenborough 2796600 YP_012320.1 CDS DVU3109 NC_002937.3 3258440 3258640 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein complement(3258440..3258640) Desulfovibrio vulgaris str. Hildenborough 2796601 YP_012321.1 CDS DVU3110 NC_002937.3 3258680 3260401 R identified by match to protein family HMM PF00890; match to protein family HMM PF02910; oxidoreductase complement(3258680..3260401) Desulfovibrio vulgaris str. Hildenborough 2796602 YP_012322.1 CDS DVU3111 NC_002937.3 3260648 3261382 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator complement(3260648..3261382) Desulfovibrio vulgaris str. Hildenborough 2796603 YP_012323.1 CDS DVU3112 NC_002937.3 3261505 3262308 R identified by match to protein family HMM PF00515; hypothetical protein complement(3261505..3262308) Desulfovibrio vulgaris str. Hildenborough 2796604 YP_012324.1 CDS carA NC_002937.3 3262359 3263486 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(3262359..3263486) Desulfovibrio vulgaris str. Hildenborough 2796605 YP_012325.1 CDS kdsB NC_002937.3 3263483 3264241 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(3263483..3264241) Desulfovibrio vulgaris str. Hildenborough 2796606 YP_012326.1 CDS DVU3115 NC_002937.3 3264367 3264600 R hypothetical protein complement(3264367..3264600) Desulfovibrio vulgaris str. Hildenborough 2796607 YP_012327.1 CDS prfC NC_002937.3 3264560 3266149 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3264560..3266149 Desulfovibrio vulgaris str. Hildenborough 2796608 YP_012328.1 CDS DVU3117 NC_002937.3 3266432 3267016 D hypothetical protein 3266432..3267016 Desulfovibrio vulgaris str. Hildenborough 2796609 YP_012329.1 CDS DVU3118 NC_002937.3 3267144 3267449 R identified by similarity to OMNI:NTL03CP0853; hypothetical protein complement(3267144..3267449) Desulfovibrio vulgaris str. Hildenborough 2796610 YP_012330.1 CDS DVU3119 NC_002937.3 3267630 3269324 D identified by match to protein family HMM PF00501; AMP-binding protein 3267630..3269324 Desulfovibrio vulgaris str. Hildenborough 2796611 YP_012331.1 CDS DVU3120 NC_002937.3 3269441 3269584 R hypothetical protein complement(3269441..3269584) Desulfovibrio vulgaris str. Hildenborough 2796612 YP_012332.1 CDS DVU3121 NC_002937.3 3269775 3270905 R identified by match to protein family HMM PF00266; class V aminotransferase complement(3269775..3270905) Desulfovibrio vulgaris str. Hildenborough 2796613 YP_012333.1 CDS DVU3122 NC_002937.3 3270935 3271042 R hypothetical protein complement(3270935..3271042) Desulfovibrio vulgaris str. Hildenborough 2796614 YP_012334.1 CDS DVU3123 NC_002937.3 3271204 3271899 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(3271204..3271899) Desulfovibrio vulgaris str. Hildenborough 2796615 YP_012335.1 CDS DVU3124 NC_002937.3 3271877 3272008 R hypothetical protein complement(3271877..3272008) Desulfovibrio vulgaris str. Hildenborough 2796616 YP_012336.1 CDS DVU3125 NC_002937.3 3272173 3272793 D lipoprotein 3272173..3272793 Desulfovibrio vulgaris str. Hildenborough 2796617 YP_012337.1 CDS pqiB NC_002937.3 3274537 3276168 D identified by similarity to SP:P43671; paraquat-inducible protein B 3274537..3276168 Desulfovibrio vulgaris str. Hildenborough 2796619 YP_012338.1 CDS DVU3128 NC_002937.3 3276158 3276775 D identified by similarity to OMNI:NTL03PA04964; match to protein family HMM PF03886; lipoprotein 3276158..3276775 Desulfovibrio vulgaris str. Hildenborough 2793977 YP_012339.1 CDS DVU3129 NC_002937.3 3276789 3276956 D hypothetical protein 3276789..3276956 Desulfovibrio vulgaris str. Hildenborough 2793978 YP_012340.1 CDS DVU3130 NC_002937.3 3277032 3277244 D hypothetical protein 3277032..3277244 Desulfovibrio vulgaris str. Hildenborough 2793979 YP_012341.1 CDS DVU3131 NC_002937.3 3277423 3278370 D identified by match to protein family HMM PF04198; transcriptional regulator 3277423..3278370 Desulfovibrio vulgaris str. Hildenborough 2793980 YP_012342.1 CDS DVU3132 NC_002937.3 3278367 3280007 D identified by similarity to SP:P18158; match to protein family HMM PF01266; glycerol-3-phosphate dehydrogenase 3278367..3280007 Desulfovibrio vulgaris str. Hildenborough 2793981 YP_012343.1 CDS DVU3133 NC_002937.3 3280115 3280870 D identified by similarity to SP:P18156; match to protein family HMM PF00230; glycerol uptake facilitator protein 3280115..3280870 Desulfovibrio vulgaris str. Hildenborough 2793982 YP_012344.1 CDS glpK NC_002937.3 3281017 3282510 D identified by similarity to PIR:JE0391; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase 3281017..3282510 Desulfovibrio vulgaris str. Hildenborough 2793983 YP_012345.1 CDS DVU3135 NC_002937.3 3282773 3283381 R identified by match to protein family HMM PF02525; flavodoxin-like fold domain-containing protein complement(3282773..3283381) Desulfovibrio vulgaris str. Hildenborough 2793984 YP_012346.1 CDS DVU3136 NC_002937.3 3283437 3284093 R identified by match to protein family HMM PF00881; nitroreductase complement(3283437..3284093) Desulfovibrio vulgaris str. Hildenborough 2793985 YP_012347.1 CDS fabG NC_002937.3 3284721 3285497 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3284721..3285497 Desulfovibrio vulgaris str. Hildenborough 2793986 YP_012348.1 CDS DVU3138 NC_002937.3 3286320 3286424 R hypothetical protein complement(3286320..3286424) Desulfovibrio vulgaris str. Hildenborough 2793987 YP_012349.1 CDS DVU3139 NC_002937.3 3286423 3287199 D identified by match to protein family HMM PF00497; solute-binding family 1 protein 3286423..3287199 Desulfovibrio vulgaris str. Hildenborough 2793988 YP_012350.1 CDS DVU3140 NC_002937.3 3287614 3289227 R identified by similarity to GP:2801417; match to protein family HMM PF02563; capsular polysaccharide transport protein complement(3287614..3289227) Desulfovibrio vulgaris str. Hildenborough 2793990 YP_012351.1 CDS DVU3141 NC_002937.3 3289514 3289894 R lipoprotein complement(3289514..3289894) Desulfovibrio vulgaris str. Hildenborough 2793991 YP_012352.1 CDS DVU3142 NC_002937.3 3290118 3291821 R identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator complement(3290118..3291821) Desulfovibrio vulgaris str. Hildenborough 2793992 YP_012353.1 CDS DVU3143 NC_002937.3 3292123 3293712 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; iron-sulfur cluster-binding protein 3292123..3293712 Desulfovibrio vulgaris str. Hildenborough 2793993 YP_012354.1 CDS DVU3144 NC_002937.3 3293742 3295370 D cytochrome c family protein 3293742..3295370 Desulfovibrio vulgaris str. Hildenborough 2793994 YP_012355.1 CDS DVU3145 NC_002937.3 3295380 3295988 D identified by match to protein family HMM PF01292; hydrogenase, b-type cytochrome subunit 3295380..3295988 Desulfovibrio vulgaris str. Hildenborough 2793995 YP_012356.1 CDS DVU3146 NC_002937.3 3296540 3297313 R hypothetical protein complement(3296540..3297313) Desulfovibrio vulgaris str. Hildenborough 2793996 YP_012357.1 CDS DVU3147 NC_002937.3 3297454 3298716 R identified by similarity to GP:3309583; match to protein family HMM PF00300; match to protein family HMM PF01591; 6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase complement(3297454..3298716) Desulfovibrio vulgaris str. Hildenborough 2793997 YP_012358.1 CDS malQ NC_002937.3 3299005 3300516 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(3299005..3300516) Desulfovibrio vulgaris str. Hildenborough 2793998 YP_012359.1 CDS sppA NC_002937.3 3300725 3301615 R identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type complement(3300725..3301615) Desulfovibrio vulgaris str. Hildenborough 2795854 YP_012360.1 CDS rpsA NC_002937.3 3301599 3303332 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(3301599..3303332) Desulfovibrio vulgaris str. Hildenborough 2795855 YP_012361.1 CDS DVU3151 NC_002937.3 3303547 3304839 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; tRNA modifying protein complement(3303547..3304839) Desulfovibrio vulgaris str. Hildenborough 2795856 YP_012362.1 CDS DVU3152 NC_002937.3 3304918 3306579 D identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 3304918..3306579 Desulfovibrio vulgaris str. Hildenborough 2795857 YP_012363.1 CDS DVU3153 NC_002937.3 3307015 3307134 D hypothetical protein 3307015..3307134 Desulfovibrio vulgaris str. Hildenborough 2795858 YP_012364.1 CDS DVU3154 NC_002937.3 3307131 3307754 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3307131..3307754 Desulfovibrio vulgaris str. Hildenborough 2795859 YP_012365.1 CDS dcrH NC_002937.3 3308230 3311121 D identified by similarity to GP:887858; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF01814; methyl-accepting chemotaxis protein DcrH 3308230..3311121 Desulfovibrio vulgaris str. Hildenborough 2795860 YP_012366.1 CDS glmS NC_002937.3 3311611 3313434 D identified by similarity to SP:Q56213; match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) 3311611..3313434 Desulfovibrio vulgaris str. Hildenborough 2795861 YP_012367.1 CDS DVU3157 NC_002937.3 3313723 3315165 D identified by similarity to OMNI:NTL03PA03238; hypothetical protein 3313723..3315165 Desulfovibrio vulgaris str. Hildenborough 2795862 YP_012368.1 CDS DVU3158 NC_002937.3 3315162 3316049 D identified by match to protein family HMM PF04333; vacJ lipoprotein 3315162..3316049 Desulfovibrio vulgaris str. Hildenborough 2795863 YP_012369.1 CDS gpsA NC_002937.3 3316170 3317162 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3316170..3317162) Desulfovibrio vulgaris str. Hildenborough 2795864 YP_012370.1 CDS DVU3160 NC_002937.3 3317193 3317312 D hypothetical protein 3317193..3317312 Desulfovibrio vulgaris str. Hildenborough 2795865 YP_012371.1 CDS DVU3161 NC_002937.3 3317454 3318503 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3317454..3318503 Desulfovibrio vulgaris str. Hildenborough 2795866 YP_012372.1 CDS DVU3162 NC_002937.3 3318606 3319901 D identified by similarity to SP:P10904; match to protein family HMM PF01547; ABC transporter periplasmic substrate-binding protein 3318606..3319901 Desulfovibrio vulgaris str. Hildenborough 2795867 YP_012373.1 CDS DVU3163 NC_002937.3 3319975 3320856 D identified by similarity to OMNI:NTL01LI0216; match to protein family HMM PF00528; ABC transporter permease 3319975..3320856 Desulfovibrio vulgaris str. Hildenborough 2795868 YP_012374.1 CDS DVU3164 NC_002937.3 3320853 3321686 D identified by similarity to OMNI:TM0598; match to protein family HMM PF00528; ABC transporter permease 3320853..3321686 Desulfovibrio vulgaris str. Hildenborough 2795869 YP_012375.1 CDS DVU3165 NC_002937.3 3321693 3322553 D identified by similarity to GP:19886751; hypothetical protein 3321693..3322553 Desulfovibrio vulgaris str. Hildenborough 2795870 YP_012376.1 CDS DVU3166 NC_002937.3 3322606 3323262 D alanyl-tRNA synthetase 3322606..3323262 Desulfovibrio vulgaris str. Hildenborough 2795871 YP_012377.1 CDS DVU3167 NC_002937.3 3323356 3323838 D identified by similarity to SP:Q52522; heme biosynthesis protein 3323356..3323838 Desulfovibrio vulgaris str. Hildenborough 2795872 YP_012378.1 CDS hemL NC_002937.3 3323906 3325177 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3323906..3325177 Desulfovibrio vulgaris str. Hildenborough 2795873 YP_012379.1 CDS cbiG NC_002937.3 3325298 3326494 D identified by similarity to SP:Q05631; match to protein family HMM PF01890; cobalamin biosynthesis protein CbiG 3325298..3326494 Desulfovibrio vulgaris str. Hildenborough 2795874 YP_012380.1 CDS cobJ NC_002937.3 3326787 3327641 D identified by similarity to SP:P21640; match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3b C17-methyltransferase 3326787..3327641 Desulfovibrio vulgaris str. Hildenborough 2795875 YP_012381.1 CDS DVU3171 NC_002937.3 3327925 3328314 D identified by similarity to SP:P00131; match to protein family HMM PF02085; cytochrome c3 3327925..3328314 Desulfovibrio vulgaris str. Hildenborough 2795876 YP_012382.1 CDS DVU3172 NC_002937.3 3328360 3330507 D hypothetical protein 3328360..3330507 Desulfovibrio vulgaris str. Hildenborough 2795877 YP_012383.1 CDS DVU3173 NC_002937.3 3330703 3330879 D hypothetical protein 3330703..3330879 Desulfovibrio vulgaris str. Hildenborough 2793823 YP_012384.1 CDS ubiE NC_002937.3 3330876 3331652 D identified by similarity to SP:P27851; match to protein family HMM PF01209; ubiquinone/menaquinone biosynthesis methlytransferase UbiE 3330876..3331652 Desulfovibrio vulgaris str. Hildenborough 2793824 YP_012385.1 CDS DVU3175 NC_002937.3 3331919 3332122 R hypothetical protein complement(3331919..3332122) Desulfovibrio vulgaris str. Hildenborough 2793825 YP_012386.1 CDS DVU3176 NC_002937.3 3332256 3333578 D identified by similarity to SP:P39861; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose/GDP-mannose dehydrogenase 3332256..3333578 Desulfovibrio vulgaris str. Hildenborough 2793826 YP_012387.1 CDS DVU3177 NC_002937.3 3333673 3333822 D hypothetical protein 3333673..3333822 Desulfovibrio vulgaris str. Hildenborough 2793827 YP_012388.1 CDS DVU3178 NC_002937.3 3333906 3334529 D identified by similarity to OMNI:NTL02SC4137; hypothetical protein 3333906..3334529 Desulfovibrio vulgaris str. Hildenborough 2793828 YP_012389.1 CDS ispB NC_002937.3 3334550 3335515 D identified by similarity to SP:P19641; match to protein family HMM PF00348; octaprenyl-diphosphate synthase 3334550..3335515 Desulfovibrio vulgaris str. Hildenborough 2793829 YP_012390.1 CDS DVU3180 NC_002937.3 3335547 3338048 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 3335547..3338048 Desulfovibrio vulgaris str. Hildenborough 2793830 YP_012391.2 CDS purL NC_002937.3 3338134 3341115 D identified by similarity to SP:P12042; match to protein family HMM PF00586; match to protein family HMM PF02769; phosphoribosylformylglycinamidine synthase II 3338134..3341115 Desulfovibrio vulgaris str. Hildenborough 2793831 YP_012392.1 CDS dcrA NC_002937.3 3341577 3343586 D identified by similarity to SP:P35841; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein DcrA 3341577..3343586 Desulfovibrio vulgaris str. Hildenborough 2793832 YP_012393.1 CDS rbO NC_002937.3 3343927 3344307 D identified by similarity to SP:P20418; match to protein family HMM PF01880; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332; desulfoferrodoxin 3343927..3344307 Desulfovibrio vulgaris str. Hildenborough 2793833 YP_012394.1 CDS DVU3184 NC_002937.3 3344324 3344482 D identified by similarity to SP:P00269; match to protein family HMM PF00301; rubredoxin 3344324..3344482 Desulfovibrio vulgaris str. Hildenborough 2793834 YP_012395.1 CDS roO NC_002937.3 3344614 3345822 D identified by similarity to SP:Q9F0J6; match to protein family HMM PF00258; match to protein family HMM PF00753; rubredoxin-oxygen oxidoreductase 3344614..3345822 Desulfovibrio vulgaris str. Hildenborough 2793835 YP_012396.1 CDS DVU3186 NC_002937.3 3346150 3346971 R hypothetical protein complement(3346150..3346971) Desulfovibrio vulgaris str. Hildenborough 2793836 YP_012397.1 CDS hup-4 NC_002937.3 3347046 3347333 D identified by similarity to SP:P02341; similarity to SP:P08821; similarity to GP:14028719; match to protein family HMM PF00216; DNA-binding protein HU 3347046..3347333 Desulfovibrio vulgaris str. Hildenborough 2793837 YP_012398.1 CDS DVU3188 NC_002937.3 3347482 3348201 R identified by match to protein family HMM PF00877; NLP/P60 family protein complement(3347482..3348201) Desulfovibrio vulgaris str. Hildenborough 2793838 YP_012399.1 CDS DVU3189 NC_002937.3 3348264 3349559 R identified by match to protein family HMM PF01189; NOL1/NOP2/sun family protein complement(3348264..3349559) Desulfovibrio vulgaris str. Hildenborough 2793839 YP_012400.1 CDS DVU3190 NC_002937.3 3349691 3351358 D hypothetical protein 3349691..3351358 Desulfovibrio vulgaris str. Hildenborough 2793840 YP_012401.1 CDS rluC NC_002937.3 3351436 3352608 D identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; ribosomal large subunit pseudouridine synthase C 3351436..3352608 Desulfovibrio vulgaris str. Hildenborough 2793841 YP_012402.1 CDS DVU3192 NC_002937.3 3352605 3353765 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 3352605..3353765 Desulfovibrio vulgaris str. Hildenborough 2793842 YP_012403.1 CDS DVU3193 NC_002937.3 3354015 3355115 R identified by match to protein family HMM TIGR01764; DNA-binding protein complement(3354015..3355115) Desulfovibrio vulgaris str. Hildenborough 2793843 YP_012404.1 CDS engA NC_002937.3 3355181 3356656 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 3355181..3356656 Desulfovibrio vulgaris str. Hildenborough 2793844 YP_012405.1 CDS DVU3195 NC_002937.3 3356741 3358129 R identified by similarity to OMNI:NTL01CJ01286; lipoprotein complement(3356741..3358129) Desulfovibrio vulgaris str. Hildenborough 2793845 YP_012406.1 CDS DVU3196 NC_002937.3 3358126 3359277 R identified by match to protein family HMM TIGR01409; twin-arginine translocation pathway signal sequence domain-containing protein complement(3358126..3359277) Desulfovibrio vulgaris str. Hildenborough 2793846 YP_012407.1 CDS ilvE NC_002937.3 3359552 3360481 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3359552..3360481 Desulfovibrio vulgaris str. Hildenborough 2793847 YP_012408.1 CDS DVU3198 NC_002937.3 3360636 3362486 D identified by similarity to SP:P06710; match to protein family HMM PF00004; DNA polymerase III subunits gamma/tau 3360636..3362486 Desulfovibrio vulgaris str. Hildenborough 2793848 YP_012409.1 CDS DVU3199 NC_002937.3 3362483 3362794 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 3362483..3362794 Desulfovibrio vulgaris str. Hildenborough 2796197 YP_012410.1 CDS recR NC_002937.3 3362805 3363410 D identified by match to protein family HMM PF02132; match to protein family HMM TIGR00615; recombination protein RecR 3362805..3363410 Desulfovibrio vulgaris str. Hildenborough 2796198 YP_012411.1 CDS DVU3201 NC_002937.3 3363813 3364874 D hypothetical protein 3363813..3364874 Desulfovibrio vulgaris str. Hildenborough 2796199 YP_012412.1 CDS DVU3202 NC_002937.3 3365112 3365948 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 3365112..3365948 Desulfovibrio vulgaris str. Hildenborough 2796200 YP_012413.2 CDS DVU3203 NC_002937.3 3366263 3367225 R DNA polymerase III subunit delta' complement(3366263..3367225) Desulfovibrio vulgaris str. Hildenborough 2796201 YP_012414.1 CDS purA NC_002937.3 3367232 3368512 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3367232..3368512) Desulfovibrio vulgaris str. Hildenborough 2796202 YP_012415.1 CDS DVU3205 NC_002937.3 3368755 3370200 D identified by match to protein family HMM PF01464; transglycosylase 3368755..3370200 Desulfovibrio vulgaris str. Hildenborough 2796203 YP_003858626.1 CDS DVU4012 NC_002937.3 3370117 3370482 R hypothetical protein complement(3370117..3370482) Desulfovibrio vulgaris str. Hildenborough 9714839 YP_012416.1 CDS DVU3206 NC_002937.3 3370503 3372035 D identified by similarity to SP:P12048; match to protein family HMM PF01808; phosphoribosylaminoimidazolecarboxamide formyltransferase 3370503..3372035 Desulfovibrio vulgaris str. Hildenborough 2796204 YP_012417.1 CDS DVU3207 NC_002937.3 3372044 3374140 D identified by match to protein family HMM PF00773; RNB-like family protein 3372044..3374140 Desulfovibrio vulgaris str. Hildenborough 2796205 YP_012418.1 CDS DVU3208 NC_002937.3 3374162 3375145 D identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; membrane protein 3374162..3375145 Desulfovibrio vulgaris str. Hildenborough 2796206 YP_012419.1 CDS DVU3209 NC_002937.3 3375196 3375291 D hypothetical protein 3375196..3375291 Desulfovibrio vulgaris str. Hildenborough 2796207 YP_012420.1 CDS thrC NC_002937.3 3375314 3376726 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260; threonine synthase 3375314..3376726 Desulfovibrio vulgaris str. Hildenborough 2796208 YP_012421.1 CDS DVU3211 NC_002937.3 3377282 3377470 R hypothetical protein complement(3377282..3377470) Desulfovibrio vulgaris str. Hildenborough 2796209 YP_012422.1 CDS DVU3212 NC_002937.3 3377699 3379408 D identified by match to protein family HMM PF00070; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase 3377699..3379408 Desulfovibrio vulgaris str. Hildenborough 2796210 YP_012423.1 CDS DVU3213 NC_002937.3 3379729 3380013 D hypothetical protein 3379729..3380013 Desulfovibrio vulgaris str. Hildenborough 2796211 YP_012424.1 CDS DVU3214 NC_002937.3 3380281 3382935 R identified by similarity to SP:P42850; match to protein family HMM PF00391; match to protein family HMM PF01326; phosphoenolpyruvate synthase complement(3380281..3382935) Desulfovibrio vulgaris str. Hildenborough 2796212 YP_012425.1 CDS DVU3215 NC_002937.3 3382952 3383317 R identified by match to protein family HMM PF00072; response regulator complement(3382952..3383317) Desulfovibrio vulgaris str. Hildenborough 2796213 YP_012426.1 CDS DVU3216 NC_002937.3 3383335 3385032 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(3383335..3385032) Desulfovibrio vulgaris str. Hildenborough 2796214 YP_012427.1 CDS DVU3217 NC_002937.3 3385718 3386146 R hypothetical protein complement(3385718..3386146) Desulfovibrio vulgaris str. Hildenborough 2796215 YP_012428.1 CDS pncA NC_002937.3 3386398 3387018 R identified by similarity to SP:P21369; match to protein family HMM PF00857; pyrazinamidase/nicotinamidase complement(3386398..3387018) Desulfovibrio vulgaris str. Hildenborough 2796216 YP_012429.2 CDS DVU3219 NC_002937.3 3387054 3388256 R hypothetical protein complement(3387054..3388256) Desulfovibrio vulgaris str. Hildenborough 2796217 YP_012430.1 CDS DVU3220 NC_002937.3 3388327 3389706 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator complement(3388327..3389706) Desulfovibrio vulgaris str. Hildenborough 2796218 YP_012431.1 CDS DVU3221 NC_002937.3 3389703 3391229 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(3389703..3391229) Desulfovibrio vulgaris str. Hildenborough 2796219 YP_012432.1 CDS pgi NC_002937.3 3391257 3392600 R identified by match to protein family HMM PF00342; glucose-6-phosphate isomerase complement(3391257..3392600) Desulfovibrio vulgaris str. Hildenborough 2796220 YP_012433.1 CDS aspB NC_002937.3 3392687 3393859 R identified by similarity to SP:P23034; match to protein family HMM PF00155; aspartate aminotransferase complement(3392687..3393859) Desulfovibrio vulgaris str. Hildenborough 2796221 YP_012434.1 CDS sfsA NC_002937.3 3394126 3394854 D identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230; sugar fermentation stimulation protein 3394126..3394854 Desulfovibrio vulgaris str. Hildenborough 2793874 YP_012435.1 CDS DVU3225 NC_002937.3 3394894 3395316 R hypothetical protein complement(3394894..3395316) Desulfovibrio vulgaris str. Hildenborough 2793875 YP_012436.1 CDS DVU3226 NC_002937.3 3395327 3395656 R hypothetical protein complement(3395327..3395656) Desulfovibrio vulgaris str. Hildenborough 2793876 YP_012437.2 CDS DVU3227 NC_002937.3 3395658 3396341 R identified by match to protein family HMM PF03748; flagellar basal body-associated protein complement(3395658..3396341) Desulfovibrio vulgaris str. Hildenborough 2793877 YP_012438.1 CDS cheY-3 NC_002937.3 3396417 3396797 R identified by similarity to SP:Q51455; match to protein family HMM PF00072; chemotaxis protein CheY complement(3396417..3396797) Desulfovibrio vulgaris str. Hildenborough 2793878 YP_012439.1 CDS fliA NC_002937.3 3396820 3397617 R identified by similarity to SP:P31804; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma factor for flagellar operon FliA complement(3396820..3397617) Desulfovibrio vulgaris str. Hildenborough 2793879 YP_012440.1 CDS DVU3230 NC_002937.3 3397571 3398398 R identified by similarity to OMNI:NTL03PA01455; match to protein family HMM PF00991; flagellar synthesis regulator FleN complement(3397571..3398398) Desulfovibrio vulgaris str. Hildenborough 2793880 YP_012441.1 CDS DVU3231 NC_002937.3 3398398 3399495 R identified by similarity to SP:Q01960; match to protein family HMM PF00448; flagellar biosynthesis protein FlhF complement(3398398..3399495) Desulfovibrio vulgaris str. Hildenborough 2793881 YP_012442.1 CDS flhA NC_002937.3 3399495 3401606 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(3399495..3401606) Desulfovibrio vulgaris str. Hildenborough 2793882 YP_012443.1 CDS flhB NC_002937.3 3401682 3402755 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(3401682..3402755) Desulfovibrio vulgaris str. Hildenborough 2793883 YP_012444.1 CDS DVU3234 NC_002937.3 3402880 3403671 R identified by similarity to SP:P35537; match to protein family HMM PF01311; match to protein family HMM TIGR01400; flagellar biosynthetic protein FliR complement(3402880..3403671) Desulfovibrio vulgaris str. Hildenborough 2793884 YP_012445.1 CDS DVU3235 NC_002937.3 3403776 3404378 D identified by similarity to SP:P12048; match to protein family HMM PF02142; IMP cyclohydrolase 3403776..3404378 Desulfovibrio vulgaris str. Hildenborough 2793885 YP_012446.1 CDS hflX NC_002937.3 3404744 3406387 D identified by similarity to SP:P25519; match to protein family HMM TIGR00231; GTP-binding protein HflX 3404744..3406387 Desulfovibrio vulgaris str. Hildenborough 2793886 YP_012447.2 CDS DVU3237 NC_002937.3 3406865 3409276 R identified by similarity to SP:P23538; match to protein family HMM PF00391; phosphoenolpyruvate synthase complement(3406865..3409276) Desulfovibrio vulgaris str. Hildenborough 2793887 YP_012448.1 CDS DVU3238 NC_002937.3 3409566 3409970 R identified by match to protein family HMM PF00072; response regulator complement(3409566..3409970) Desulfovibrio vulgaris str. Hildenborough 2793888 YP_012449.1 CDS DVU3239 NC_002937.3 3410195 3410860 R identified by match to protein family HMM PF01569; PAP2 family protein complement(3410195..3410860) Desulfovibrio vulgaris str. Hildenborough 2793889 YP_012450.1 CDS DVU3240 NC_002937.3 3410878 3411867 R identified by match to protein family HMM PF01551; M24/M37 family peptidase complement(3410878..3411867) Desulfovibrio vulgaris str. Hildenborough 2793890 YP_012451.1 CDS DVU3241 NC_002937.3 3411881 3412627 R identified by similarity to OMNI:NTL03CP0990; match to protein family HMM PF01171; hypothetical protein complement(3411881..3412627) Desulfovibrio vulgaris str. Hildenborough 2793891 YP_012452.1 CDS rpoZ NC_002937.3 3413030 3413263 D identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 3413030..3413263 Desulfovibrio vulgaris str. Hildenborough 2793892 YP_012453.1 CDS dnaJ NC_002937.3 3413276 3414406 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 3413276..3414406 Desulfovibrio vulgaris str. Hildenborough 2793893 YP_012454.1 CDS DVU3244 NC_002937.3 3414449 3414784 R hypothetical protein complement(3414449..3414784) Desulfovibrio vulgaris str. Hildenborough 2793894 YP_012455.1 CDS greA NC_002937.3 3414783 3415274 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 3414783..3415274 Desulfovibrio vulgaris str. Hildenborough 2793895 YP_012456.1 CDS DVU3246 NC_002937.3 3415791 3417416 D identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein 3415791..3417416 Desulfovibrio vulgaris str. Hildenborough 2793896 YP_012457.1 CDS DVU3247 NC_002937.3 3417458 3418627 D identified by similarity to GP:1707644; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 3417458..3418627 Desulfovibrio vulgaris str. Hildenborough 2793849 YP_012458.1 CDS DVU3248 NC_002937.3 3418656 3421799 D identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915; AcrB/AcrD/AcrF family protein 3418656..3421799 Desulfovibrio vulgaris str. Hildenborough 2793850 YP_012459.1 CDS DVU3249 NC_002937.3 3421807 3422487 D identified by similarity to OMNI:NTL01ST1561; lipoprotein 3421807..3422487 Desulfovibrio vulgaris str. Hildenborough 2793851 YP_012460.1 CDS DVU3250 NC_002937.3 3423100 3423801 R hypothetical protein complement(3423100..3423801) Desulfovibrio vulgaris str. Hildenborough 2793853 YP_012461.1 CDS DVU3251 NC_002937.3 3424152 3424691 R identified by similarity to OMNI:NTL01SS02725; match to protein family HMM PF04982; HPP family membrane protein complement(3424152..3424691) Desulfovibrio vulgaris str. Hildenborough 2793854 YP_012462.1 CDS DVU3252 NC_002937.3 3424702 3424953 D hypothetical protein 3424702..3424953 Desulfovibrio vulgaris str. Hildenborough 2793855 YP_012463.1 CDS DVU3253 NC_002937.3 3425041 3426306 D identified by similarity to SP:P76085; phenylacetate-coenzyme A ligase 3425041..3426306 Desulfovibrio vulgaris str. Hildenborough 2793856 YP_012464.1 CDS DVU3254 NC_002937.3 3426297 3427661 D identified by match to protein family HMM PF00595; PDZ domain-containing protein 3426297..3427661 Desulfovibrio vulgaris str. Hildenborough 2793857 YP_012465.1 CDS DVU3255 NC_002937.3 3427697 3428095 D identified by match to protein family HMM PF01402; CopG family transcriptional regulator 3427697..3428095 Desulfovibrio vulgaris str. Hildenborough 2793858 YP_012466.1 CDS mutM NC_002937.3 3428191 3429288 D identified by match to protein family HMM PF01149; match to protein family HMM TIGR00577; formamidopyrimidine-DNA glycosylase 3428191..3429288 Desulfovibrio vulgaris str. Hildenborough 2793859 YP_012467.1 CDS DVU3257 NC_002937.3 3429560 3432484 R identified by similarity to SP:P39695; match to protein family HMM TIGR00360; DNA internalization-related competence protein ComEC/Rec2 complement(3429560..3432484) Desulfovibrio vulgaris str. Hildenborough 2793860 YP_012468.1 CDS murA NC_002937.3 3432618 3433871 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3432618..3433871) Desulfovibrio vulgaris str. Hildenborough 2793861 YP_012469.1 CDS xth NC_002937.3 3434823 3435596 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 3434823..3435596 Desulfovibrio vulgaris str. Hildenborough 2793863 YP_012470.1 CDS DVU3260 NC_002937.3 3435859 3436239 R hypothetical protein complement(3435859..3436239) Desulfovibrio vulgaris str. Hildenborough 2793864 YP_012471.1 CDS frdC NC_002937.3 3436318 3436968 D identified by similarity to SP:P17413; fumarate reductase, cytochrome subunit B 3436318..3436968 Desulfovibrio vulgaris str. Hildenborough 2793865 YP_012472.1 CDS fdrA NC_002937.3 3436978 3438816 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 3436978..3438816 Desulfovibrio vulgaris str. Hildenborough 2793866 YP_012473.1 CDS frdB NC_002937.3 3438819 3439562 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 3438819..3439562 Desulfovibrio vulgaris str. Hildenborough 2793867 YP_012474.1 CDS DVU3264 NC_002937.3 3439948 3440787 D Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 3439948..3440787 Desulfovibrio vulgaris str. Hildenborough 2793868 YP_012475.1 CDS DVU3265 NC_002937.3 3440787 3441338 D identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; tartrate dehydratase subunit beta 3440787..3441338 Desulfovibrio vulgaris str. Hildenborough 2793869 YP_012476.1 CDS DVU3266 NC_002937.3 3441602 3442393 R hypothetical protein complement(3441602..3442393) Desulfovibrio vulgaris str. Hildenborough 2793870 YP_012477.1 CDS DVU3267 NC_002937.3 3442444 3443055 D hypothetical protein 3442444..3443055 Desulfovibrio vulgaris str. Hildenborough 2793871 YP_012478.1 CDS DVU3268 NC_002937.3 3443136 3444398 D identified by similarity to OMNI:NTL01MK0862; hypothetical protein 3443136..3444398 Desulfovibrio vulgaris str. Hildenborough 2793872 YP_012479.1 CDS DVU3269 NC_002937.3 3444526 3447045 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 3444526..3447045 Desulfovibrio vulgaris str. Hildenborough 2793873 YP_012480.1 CDS cydB NC_002937.3 3447306 3448331 R identified by similarity to SP:P94365; match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II complement(3447306..3448331) Desulfovibrio vulgaris str. Hildenborough 2795994 YP_012481.1 CDS cydA NC_002937.3 3448377 3449678 R identified by similarity to SP:P94364; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I complement(3448377..3449678) Desulfovibrio vulgaris str. Hildenborough 2795995 YP_012482.1 CDS DVU3272 NC_002937.3 3450229 3450852 R identified by match to protein family HMM PF00515; hypothetical protein complement(3450229..3450852) Desulfovibrio vulgaris str. Hildenborough 2795996 YP_012483.1 CDS DVU3273 NC_002937.3 3450836 3451228 R identified by similarity to GP:944973; hypothetical protein complement(3450836..3451228) Desulfovibrio vulgaris str. Hildenborough 2795997 YP_012484.1 CDS DVU3274 NC_002937.3 3451228 3451896 R hypothetical protein complement(3451228..3451896) Desulfovibrio vulgaris str. Hildenborough 2795998 YP_012485.1 CDS DVU3275 NC_002937.3 3451893 3452033 R hypothetical protein complement(3451893..3452033) Desulfovibrio vulgaris str. Hildenborough 2795999 YP_012486.1 CDS DVU3276 NC_002937.3 3452147 3452335 R identified by similarity to SP:P08813; match to protein family HMM PF00037; ferredoxin I complement(3452147..3452335) Desulfovibrio vulgaris str. Hildenborough 2796000 YP_012487.1 CDS DVU3277 NC_002937.3 3452418 3452516 R hypothetical protein complement(3452418..3452516) Desulfovibrio vulgaris str. Hildenborough 2796001 YP_012488.1 CDS DVU3278 NC_002937.3 3452517 3454073 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; peptidase/PDZ domain-containing protein complement(3452517..3454073) Desulfovibrio vulgaris str. Hildenborough 2796002 YP_012489.1 CDS cobT NC_002937.3 3454215 3455288 D identified by similarity to SP:P36562; match to protein family HMM PF02277; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3454215..3455288 Desulfovibrio vulgaris str. Hildenborough 2796003 YP_012490.1 CDS DVU3281 NC_002937.3 3456490 3456990 D hypothetical protein 3456490..3456990 Desulfovibrio vulgaris str. Hildenborough 2796005 YP_012491.1 CDS DVU3282 NC_002937.3 3457225 3458124 R identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase complement(3457225..3458124) Desulfovibrio vulgaris str. Hildenborough 2796006 YP_012492.1 CDS DVU3283 NC_002937.3 3459141 3459374 D hypothetical protein 3459141..3459374 Desulfovibrio vulgaris str. Hildenborough 2796007 YP_012493.1 CDS DVU3284 NC_002937.3 3459535 3461166 R identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease complement(3459535..3461166) Desulfovibrio vulgaris str. Hildenborough 2796008 YP_012494.1 CDS DVU3285 NC_002937.3 3461235 3461411 R hypothetical protein complement(3461235..3461411) Desulfovibrio vulgaris str. Hildenborough 2796009 YP_012495.1 CDS DVU3286 NC_002937.3 3461450 3461575 R hypothetical protein complement(3461450..3461575) Desulfovibrio vulgaris str. Hildenborough 2796010 YP_012496.1 CDS DVU3287 NC_002937.3 3461929 3463962 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(3461929..3463962) Desulfovibrio vulgaris str. Hildenborough 2796011 YP_012497.1 CDS DVU3288 NC_002937.3 3464004 3464111 D hypothetical protein 3464004..3464111 Desulfovibrio vulgaris str. Hildenborough 2796012 YP_012498.1 CDS DVU3289 NC_002937.3 3464096 3464260 R hypothetical protein complement(3464096..3464260) Desulfovibrio vulgaris str. Hildenborough 2796013 YP_012499.1 CDS DVU3290 NC_002937.3 3464277 3465332 D identified by similarity to OMNI:NTL01TT0760; hypothetical protein 3464277..3465332 Desulfovibrio vulgaris str. Hildenborough 2796014 YP_012500.1 CDS DVU3291 NC_002937.3 3465296 3466930 D identified by match to protein family HMM PF00037; match to protein family HMM PF01645; glutamate synthase 3465296..3466930 Desulfovibrio vulgaris str. Hildenborough 2796015 YP_012501.1 CDS DVU3292 NC_002937.3 3467009 3469339 D identified by match to protein family HMM PF00037; match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase 3467009..3469339 Desulfovibrio vulgaris str. Hildenborough 2796016 YP_012502.1 CDS DVU3293 NC_002937.3 3469747 3471390 D catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 3469747..3471390 Desulfovibrio vulgaris str. Hildenborough 2796017 YP_012503.1 CDS DVU3294 NC_002937.3 3471408 3472802 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 3471408..3472802 Desulfovibrio vulgaris str. Hildenborough 2796018 YP_012504.1 CDS DVU3295 NC_002937.3 3473090 3473737 R identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III complement(3473090..3473737) Desulfovibrio vulgaris str. Hildenborough 2796019 YP_012505.1 CDS DVU3296 NC_002937.3 3473928 3474455 D identified by similarity to GP:6689140; hypothetical protein 3473928..3474455 Desulfovibrio vulgaris str. Hildenborough 2796020 YP_012506.1 CDS DVU3297 NC_002937.3 3474483 3475742 R identified by similarity to SP:P22306; match to protein family HMM PF03222; match to protein family HMM TIGR00837; tryptophan-specific transport protein complement(3474483..3475742) Desulfovibrio vulgaris str. Hildenborough 2796032 YP_012507.1 CDS DVU3298 NC_002937.3 3475987 3476769 R hypothetical protein complement(3475987..3476769) Desulfovibrio vulgaris str. Hildenborough 2796033 YP_012508.1 CDS DVU3299 NC_002937.3 3476756 3477826 R identified by match to protein family HMM PF01925; hypothetical protein complement(3476756..3477826) Desulfovibrio vulgaris str. Hildenborough 2796034 YP_012509.1 CDS DVU3300 NC_002937.3 3477840 3478133 R hypothetical protein complement(3477840..3478133) Desulfovibrio vulgaris str. Hildenborough 2796035 YP_012510.1 CDS DVU3301 NC_002937.3 3478195 3478737 R hypothetical protein complement(3478195..3478737) Desulfovibrio vulgaris str. Hildenborough 2796036 YP_012511.1 CDS DVU3302 NC_002937.3 3478758 3479084 R hypothetical protein complement(3478758..3479084) Desulfovibrio vulgaris str. Hildenborough 2796037 YP_012512.1 CDS DVU3303 NC_002937.3 3479157 3481265 D identified by match to protein family HMM PF00004; match to protein family HMM PF00072; match to protein family HMM PF05362; ATP-dependent protease La 3479157..3481265 Desulfovibrio vulgaris str. Hildenborough 2796038 YP_012513.1 CDS DVU3305 NC_002937.3 3482737 3484092 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 3482737..3484092 Desulfovibrio vulgaris str. Hildenborough 2796040 YP_012514.1 CDS DVU3306 NC_002937.3 3484322 3484486 D hypothetical protein 3484322..3484486 Desulfovibrio vulgaris str. Hildenborough 2796041 YP_012515.1 CDS ubiX NC_002937.3 3484853 3485416 D identified by similarity to SP:P09550; match to protein family HMM PF02441; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3484853..3485416 Desulfovibrio vulgaris str. Hildenborough 2796043 YP_012516.1 CDS DVU3308 NC_002937.3 3485523 3486242 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 3485523..3486242 Desulfovibrio vulgaris str. Hildenborough 2796044 YP_012517.1 CDS DVU3309 NC_002937.3 3486274 3486606 D identified by match to protein family HMM PF01541; endo/excinuclease amino terminal domain-containing protein 3486274..3486606 Desulfovibrio vulgaris str. Hildenborough 2796045 YP_012518.1 CDS DVU3310 NC_002937.3 3486594 3488192 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; DEAD/DEAH box helicase 3486594..3488192 Desulfovibrio vulgaris str. Hildenborough 2796046 YP_012519.1 CDS DVU3311 NC_002937.3 3488379 3488555 R hypothetical protein complement(3488379..3488555) Desulfovibrio vulgaris str. Hildenborough 2796047 YP_012520.1 CDS DVU3312 NC_002937.3 3488692 3489147 D identified by similarity to SP:O28974; hypothetical protein 3488692..3489147 Desulfovibrio vulgaris str. Hildenborough 2796048 YP_012521.1 CDS DVU3313 NC_002937.3 3489178 3490068 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(3489178..3490068) Desulfovibrio vulgaris str. Hildenborough 2796049 YP_012522.1 CDS DVU3314 NC_002937.3 3490740 3492716 R identified by match to protein family HMM PF01136; U32 family peptidase complement(3490740..3492716) Desulfovibrio vulgaris str. Hildenborough 2796050 YP_012523.1 CDS pyrK NC_002937.3 3493097 3493915 D identified by similarity to SP:P25983; dihydroorotate dehydrogenase, electron transfer subunit 3493097..3493915 Desulfovibrio vulgaris str. Hildenborough 2796051 YP_012524.1 CDS pyrD NC_002937.3 3493924 3494847 D identified by similarity to SP:P54322; match to protein family HMM PF01180; match to protein family HMM TIGR01037; dihydroorotate dehydrogenase 3493924..3494847 Desulfovibrio vulgaris str. Hildenborough 2796052 YP_012525.1 CDS DVU3317 NC_002937.3 3494848 3495018 R hypothetical protein complement(3494848..3495018) Desulfovibrio vulgaris str. Hildenborough 2796053 YP_012526.1 CDS DVU3318 NC_002937.3 3495031 3495201 R hypothetical protein complement(3495031..3495201) Desulfovibrio vulgaris str. Hildenborough 2796054 YP_012527.1 CDS putA NC_002937.3 3495296 3498316 D identified by similarity to SP:P09546; match to protein family HMM PF00171; match to protein family HMM PF01619; match to protein family HMM TIGR01237; proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase 3495296..3498316 Desulfovibrio vulgaris str. Hildenborough 2796055 YP_012528.1 CDS DVU3320 NC_002937.3 3498575 3498955 R identified by similarity to OMNI:NTL01YP2009; hypothetical protein complement(3498575..3498955) Desulfovibrio vulgaris str. Hildenborough 2796056 YP_012529.1 CDS DVU3321 NC_002937.3 3498958 3499050 R hypothetical protein complement(3498958..3499050) Desulfovibrio vulgaris str. Hildenborough 2796057 YP_012530.1 CDS DVU3322 NC_002937.3 3499225 3499683 D identified by similarity to OMNI:NTL01FN1931; hypothetical protein 3499225..3499683 Desulfovibrio vulgaris str. Hildenborough 2796058 YP_012531.1 CDS DVU3323 NC_002937.3 3499680 3501146 D identified by match to protein family HMM PF02687; ABC transporter permease 3499680..3501146 Desulfovibrio vulgaris str. Hildenborough 2796334 YP_012532.1 CDS DVU3324 NC_002937.3 3501366 3502031 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3501366..3502031 Desulfovibrio vulgaris str. Hildenborough 2796335 YP_012534.1 CDS DVU3326 NC_002937.3 3502423 3502743 R identified by similarity to GP:12024949; match to protein family HMM PF00893; SMR family multidrug efflux pump complement(3502423..3502743) Desulfovibrio vulgaris str. Hildenborough 2796337 YP_012535.1 CDS DVU3327 NC_002937.3 3502752 3503135 R identified by similarity to GP:12024949; match to protein family HMM PF00893; SMR family multidrug efflux pump complement(3502752..3503135) Desulfovibrio vulgaris str. Hildenborough 2796338 YP_012536.1 CDS DVU3328 NC_002937.3 3503457 3503786 R hypothetical protein complement(3503457..3503786) Desulfovibrio vulgaris str. Hildenborough 2796339 YP_012537.1 CDS DVU3329 NC_002937.3 3503794 3503919 R hypothetical protein complement(3503794..3503919) Desulfovibrio vulgaris str. Hildenborough 2796340 YP_012538.1 CDS DVU3330 NC_002937.3 3503964 3504239 D identified by similarity to OMNI:NTL01TE1332; hypothetical protein 3503964..3504239 Desulfovibrio vulgaris str. Hildenborough 2796341 YP_012539.1 CDS DVU3331 NC_002937.3 3504315 3504698 D hypothetical protein 3504315..3504698 Desulfovibrio vulgaris str. Hildenborough 2796342 YP_012540.1 CDS DVU3332 NC_002937.3 3504689 3506509 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; heavy metal translocating P-type ATPase 3504689..3506509 Desulfovibrio vulgaris str. Hildenborough 2796343 YP_012541.1 CDS DVU3333 NC_002937.3 3506506 3506964 D hypothetical protein 3506506..3506964 Desulfovibrio vulgaris str. Hildenborough 2796344 YP_012542.1 CDS DVU3334 NC_002937.3 3507257 3508606 R identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator complement(3507257..3508606) Desulfovibrio vulgaris str. Hildenborough 2796345 YP_012543.1 CDS DVU3335 NC_002937.3 3508603 3510384 R identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(3508603..3510384) Desulfovibrio vulgaris str. Hildenborough 2796346 YP_012544.1 CDS DVU3336 NC_002937.3 3510381 3511520 R identified by match to protein family HMM PF00582; potassium channel histidine kinase domain-containing protein/universal stress protein complement(3510381..3511520) Desulfovibrio vulgaris str. Hildenborough 2796347 YP_012545.1 CDS kdpC NC_002937.3 3511602 3512159 R identified by similarity to SP:P03961; match to protein family HMM PF02669; match to protein family HMM TIGR00681; K+-transporting ATPase subunit C complement(3511602..3512159) Desulfovibrio vulgaris str. Hildenborough 2796348 YP_012546.1 CDS kdpB NC_002937.3 3512169 3514205 R identified by similarity to GP:2772548; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497; K+-transporting ATPase subunit B complement(3512169..3514205) Desulfovibrio vulgaris str. Hildenborough 2796349 YP_012547.1 CDS kdpA NC_002937.3 3514222 3515931 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(3514222..3515931) Desulfovibrio vulgaris str. Hildenborough 2796350 YP_012548.1 CDS kdpF NC_002937.3 3515940 3516029 R identified by match to protein family HMM TIGR02115; K+-transporting ATPase subunit F complement(3515940..3516029) Desulfovibrio vulgaris str. Hildenborough 2796351 YP_012549.1 CDS DVU3340 NC_002937.3 3516041 3516304 D hypothetical protein 3516041..3516304 Desulfovibrio vulgaris str. Hildenborough 2796352 YP_012550.1 CDS DVU3341 NC_002937.3 3516446 3516559 R hypothetical protein complement(3516446..3516559) Desulfovibrio vulgaris str. Hildenborough 2796353 YP_012551.1 CDS DVU3342 NC_002937.3 3516572 3516988 D hypothetical protein 3516572..3516988 Desulfovibrio vulgaris str. Hildenborough 2796354 YP_012552.1 CDS DVU3343 NC_002937.3 3516985 3517404 D hypothetical protein 3516985..3517404 Desulfovibrio vulgaris str. Hildenborough 2796355 YP_012553.1 CDS DVU3344 NC_002937.3 3517416 3518585 D hypothetical protein 3517416..3518585 Desulfovibrio vulgaris str. Hildenborough 2796356 YP_003858627.1 CDS DVU4007 NC_002937.3 3518663 3518953 R hypothetical protein complement(3518663..3518953) Desulfovibrio vulgaris str. Hildenborough 9714838 YP_012555.1 CDS DVU3346 NC_002937.3 3519014 3519142 D hypothetical protein 3519014..3519142 Desulfovibrio vulgaris str. Hildenborough 2796358 YP_012556.1 CDS DVU3347 NC_002937.3 3519266 3519814 R identified by match to protein family HMM PF01558; pyruvate ferredoxin/flavodoxin oxidoreductase complement(3519266..3519814) Desulfovibrio vulgaris str. Hildenborough 2796359 YP_012557.2 CDS DVU3348 NC_002937.3 3519814 3520596 R pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta complement(3519814..3520596) Desulfovibrio vulgaris str. Hildenborough 2796360 YP_012558.1 CDS DVU3349 NC_002937.3 3520596 3521669 R catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase complement(3520596..3521669) Desulfovibrio vulgaris str. Hildenborough 2796361 YP_012559.1 CDS DVU3350 NC_002937.3 3521673 3521906 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein complement(3521673..3521906) Desulfovibrio vulgaris str. Hildenborough 2795664 YP_012560.1 CDS queA NC_002937.3 3522270 3523385 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(3522270..3523385) Desulfovibrio vulgaris str. Hildenborough 2795665 YP_012561.1 CDS DVU3352 NC_002937.3 3523498 3524067 D lipoprotein 3523498..3524067 Desulfovibrio vulgaris str. Hildenborough 2795666 YP_012562.1 CDS coaBC NC_002937.3 3524067 3525281 D identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3524067..3525281 Desulfovibrio vulgaris str. Hildenborough 2795667 YP_003858628.1 CDS DVU4021 NC_002937.3 3525263 3526180 D hypothetical protein 3525263..3526180 Desulfovibrio vulgaris str. Hildenborough 9714837 YP_012564.1 CDS DVU3355 NC_002937.3 3526649 3527404 D identified by similarity to OMNI:CT0796; match to protein family HMM PF01145; hypothetical protein 3526649..3527404 Desulfovibrio vulgaris str. Hildenborough 2795669 YP_012565.1 CDS DVU3356 NC_002937.3 3527452 3528459 D identified by similarity to GP:5739472; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 3527452..3528459 Desulfovibrio vulgaris str. Hildenborough 2795670 YP_012566.1 CDS DVU3357 NC_002937.3 3528914 3529111 R hypothetical protein complement(3528914..3529111) Desulfovibrio vulgaris str. Hildenborough 2795671 YP_012567.1 CDS DVU3358 NC_002937.3 3529155 3529985 D identified by match to protein family HMM PF00991; ParA family protein 3529155..3529985 Desulfovibrio vulgaris str. Hildenborough 2795672 YP_012568.1 CDS DVU3359 NC_002937.3 3529990 3530409 R hypothetical protein complement(3529990..3530409) Desulfovibrio vulgaris str. Hildenborough 2795673 YP_012569.1 CDS DVU3360 NC_002937.3 3530486 3531400 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family protein 3530486..3531400 Desulfovibrio vulgaris str. Hildenborough 2795674 YP_012570.1 CDS DVU3361 NC_002937.3 3531411 3532436 D identified by similarity to GP:882153; match to protein family HMM PF00294; ADP-heptose synthase 3531411..3532436 Desulfovibrio vulgaris str. Hildenborough 2795675 YP_012571.1 CDS DVU3362 NC_002937.3 3532518 3532898 D identified by similarity to OMNI:NTL01BH0861; hypothetical protein 3532518..3532898 Desulfovibrio vulgaris str. Hildenborough 2795676 YP_012572.1 CDS sun NC_002937.3 3532995 3534518 R identified by match to protein family HMM PF01029; match to protein family HMM PF01189; sun protein complement(3532995..3534518) Desulfovibrio vulgaris str. Hildenborough 2795677 YP_012573.1 CDS DVU3364 NC_002937.3 3534750 3535673 R identified by similarity to OMNI:NTL01TT1406; hypothetical protein complement(3534750..3535673) Desulfovibrio vulgaris str. Hildenborough 2795678 YP_012574.1 CDS fmt NC_002937.3 3535794 3536786 R identified by similarity to SP:O85732; similarity to SP:P23882; similarity to SP:P94463; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase complement(3535794..3536786) Desulfovibrio vulgaris str. Hildenborough 2795679 YP_012575.1 CDS def NC_002937.3 3536759 3537274 R identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079; polypeptide deformylase complement(3536759..3537274) Desulfovibrio vulgaris str. Hildenborough 2795680 YP_012576.1 CDS aspS NC_002937.3 3537577 3539409 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(3537577..3539409) Desulfovibrio vulgaris str. Hildenborough 2795681 YP_012577.1 CDS hisS NC_002937.3 3539428 3540681 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(3539428..3540681) Desulfovibrio vulgaris str. Hildenborough 2795682 YP_012578.1 CDS DVU3369 NC_002937.3 3540802 3541590 R identified by similarity to GP:19572327; hypothetical protein complement(3540802..3541590) Desulfovibrio vulgaris str. Hildenborough 2795683 YP_012579.1 CDS DVU3370 NC_002937.3 3541630 3542100 D hypothetical protein 3541630..3542100 Desulfovibrio vulgaris str. Hildenborough 2795684 YP_012580.1 CDS metE NC_002937.3 3542097 3544454 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(3542097..3544454) Desulfovibrio vulgaris str. Hildenborough 2795685 YP_012581.1 CDS DVU3372 NC_002937.3 3544779 3544910 R hypothetical protein complement(3544779..3544910) Desulfovibrio vulgaris str. Hildenborough 2795686 YP_012582.1 CDS ilvD NC_002937.3 3544991 3546655 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(3544991..3546655) Desulfovibrio vulgaris str. Hildenborough 2795687 YP_012583.1 CDS DVU3374 NC_002937.3 3546687 3547520 R identified by match to protein family HMM PF02687; permease complement(3546687..3547520) Desulfovibrio vulgaris str. Hildenborough 2795688 YP_012584.1 CDS DVU3375 NC_002937.3 3547562 3548278 R identified by similarity to SP:P10115; match to protein family HMM PF00005; cell division ATP-binding protein FtsE complement(3547562..3548278) Desulfovibrio vulgaris str. Hildenborough 2795689 YP_012585.1 CDS DVU3376 NC_002937.3 3548478 3550052 R identified by match to protein family HMM PF00884; sulfatase complement(3548478..3550052) Desulfovibrio vulgaris str. Hildenborough 2795690 YP_012586.1 CDS dgkA NC_002937.3 3550058 3550432 R identified by similarity to SP:P00556; match to protein family HMM PF01219; diacylglycerol kinase complement(3550058..3550432) Desulfovibrio vulgaris str. Hildenborough 2795691 YP_012587.1 CDS DVU3378 NC_002937.3 3550535 3550996 R identified by match to protein family HMM PF04073; YbaK/EbsC protein complement(3550535..3550996) Desulfovibrio vulgaris str. Hildenborough 2795692 YP_012588.1 CDS DVU3379 NC_002937.3 3551477 3553810 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(3551477..3553810) Desulfovibrio vulgaris str. Hildenborough 2796398 YP_012589.1 CDS DVU3380 NC_002937.3 3553923 3554045 R hypothetical protein complement(3553923..3554045) Desulfovibrio vulgaris str. Hildenborough 2796399 YP_012590.1 CDS DVU3381 NC_002937.3 3554350 3555729 R identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; transcriptional regulator zraR complement(3554350..3555729) Desulfovibrio vulgaris str. Hildenborough 2796400 YP_012591.1 CDS zraS NC_002937.3 3555731 3557770 R identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensor protein ZraS complement(3555731..3557770) Desulfovibrio vulgaris str. Hildenborough 2796401 YP_012592.1 CDS DVU3383 NC_002937.3 3557761 3558243 D hypothetical protein 3557761..3558243 Desulfovibrio vulgaris str. Hildenborough 2796402 YP_012593.1 CDS zraP NC_002937.3 3558362 3558883 D identified by similarity to SP:P32682; zinc resistance-associated protein 3558362..3558883 Desulfovibrio vulgaris str. Hildenborough 2796403 YP_012594.1 CDS DVU3385 NC_002937.3 3559220 3559354 R hypothetical protein complement(3559220..3559354) Desulfovibrio vulgaris str. Hildenborough 2796404 YP_012595.1 CDS DVU3386 NC_002937.3 3559448 3560830 R identified by match to protein family HMM PF03773; permease complement(3559448..3560830) Desulfovibrio vulgaris str. Hildenborough 2796405 YP_012596.1 CDS DVU3387 NC_002937.3 3561502 3562515 R hypothetical protein complement(3561502..3562515) Desulfovibrio vulgaris str. Hildenborough 2796406 YP_012597.1 CDS DVU3388 NC_002937.3 3562683 3563510 R identified by match to protein family HMM PF01435; lipoprotein complement(3562683..3563510) Desulfovibrio vulgaris str. Hildenborough 2796407 YP_012598.1 CDS topA NC_002937.3 3563643 3565925 D identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051; DNA topoisomerase I 3563643..3565925 Desulfovibrio vulgaris str. Hildenborough 2796408 YP_003858629.1 CDS DVU4001 NC_002937.3 3566161 3566721 R hypothetical protein complement(3566161..3566721) Desulfovibrio vulgaris str. Hildenborough 9714836 YP_012600.1 CDS DVU3391 NC_002937.3 3567052 3567300 D hypothetical protein 3567052..3567300 Desulfovibrio vulgaris str. Hildenborough 2796410 YP_012601.1 CDS glnA NC_002937.3 3567474 3568817 D identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 3567474..3568817 Desulfovibrio vulgaris str. Hildenborough 2796411 YP_012602.1 CDS DVU3393 NC_002937.3 3568857 3569081 R hypothetical protein complement(3568857..3569081) Desulfovibrio vulgaris str. Hildenborough 2796412 YP_012603.1 CDS DVU3394 NC_002937.3 3569082 3569261 D hypothetical protein 3569082..3569261 Desulfovibrio vulgaris str. Hildenborough 2796413 YP_012604.1 CDS DVU3395 NC_002937.3 3569404 3570714 R identified by match to protein family HMM PF01551; M24/M37 family peptidase complement(3569404..3570714) Desulfovibrio vulgaris str. Hildenborough 2796414 YP_009041.1 CDS DVUA0001 NC_005863.1 699 872 R hypothetical protein complement(699..872) Desulfovibrio vulgaris str. Hildenborough 2781567 YP_009042.1 CDS DVUA0002 NC_005863.1 871 1689 D identified by match to protein family HMM PF00991; ParA family protein 871..1689 Desulfovibrio vulgaris str. Hildenborough 2781501 YP_009043.1 CDS DVUA0003 NC_005863.1 1740 5135 D hypothetical protein 1740..5135 Desulfovibrio vulgaris str. Hildenborough 2781500 YP_009044.1 CDS DVUA0004 NC_005863.1 5490 5843 D identified by similarity to GP:14028719; match to protein family HMM PF00216; DNA-binding protein HU 5490..5843 Desulfovibrio vulgaris str. Hildenborough 2781499 YP_009045.1 CDS DVUA0005 NC_005863.1 6498 7433 R identified by match to protein family HMM PF00582; universal stress protein complement(6498..7433) Desulfovibrio vulgaris str. Hildenborough 2781483 YP_009046.1 CDS DVUA0006 NC_005863.1 7456 8451 R identified by similarity to GP:619724; match to protein family HMM PF00571; match to protein family HMM PF01769; magnesium transporter MgtE complement(7456..8451) Desulfovibrio vulgaris str. Hildenborough 2781498 YP_009047.1 CDS nifB NC_005863.1 8901 10445 R identified by similarity to SP:P10390; match to protein family HMM PF02579; match to protein family HMM PF04055; nitrogenase cofactor biosynthesis protein NifB complement(8901..10445) Desulfovibrio vulgaris str. Hildenborough 2781497 YP_009048.1 CDS DVUA0008 NC_005863.1 10458 11972 R identified by similarity to GP:1666889; match to protein family HMM PF00148; nitrogenase molybdenum-iron cofactor biosynthesis protein NifN complement(10458..11972) Desulfovibrio vulgaris str. Hildenborough 2781496 YP_009049.1 CDS DVUA0009 NC_005863.1 11959 13665 R functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE complement(11959..13665) Desulfovibrio vulgaris str. Hildenborough 2781495 YP_009050.1 CDS DVUA0010 NC_005863.1 14308 14610 R identified by similarity to SP:P07324; ferredoxin, 2fe-2s complement(14308..14610) Desulfovibrio vulgaris str. Hildenborough 2781519 YP_009051.1 CDS nifK NC_005863.1 14801 16186 R identified by similarity to SP:P11347; match to protein family HMM PF00148; match to protein family HMM TIGR01286; nitrogenase molybdenum-iron protein subunit beta complement(14801..16186) Desulfovibrio vulgaris str. Hildenborough 2781518 YP_009052.1 CDS nifD NC_005863.1 16223 17851 R identified by similarity to SP:P00467; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862; nitrogenase molybdenum-iron protein subunit alpha complement(16223..17851) Desulfovibrio vulgaris str. Hildenborough 2781517 YP_009053.1 CDS glnB-2 NC_005863.1 17863 18258 R identified by similarity to SP:P80016; match to protein family HMM PF00543; nitrogen regulatory protein P-II complement(17863..18258) Desulfovibrio vulgaris str. Hildenborough 2781516 YP_009054.1 CDS glnB-3 NC_005863.1 18268 18594 R identified by similarity to SP:P54807; match to protein family HMM PF00543; nitrogen regulatory protein P-II complement(18268..18594) Desulfovibrio vulgaris str. Hildenborough 2781515 YP_009055.1 CDS nifH NC_005863.1 18877 19710 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; nitrogenase reductase complement(18877..19710) Desulfovibrio vulgaris str. Hildenborough 2781514 YP_009056.1 CDS DVUA0016 NC_005863.1 20468 21622 D identified by similarity to SP:Q44290; match to protein family HMM PF00682; homocitrate synthase 20468..21622 Desulfovibrio vulgaris str. Hildenborough 2781481 YP_009057.1 CDS DVUA0017 NC_005863.1 22251 22361 D hypothetical protein 22251..22361 Desulfovibrio vulgaris str. Hildenborough 2781546 YP_009058.1 CDS DVUA0018 NC_005863.1 22463 22651 R hypothetical protein complement(22463..22651) Desulfovibrio vulgaris str. Hildenborough 2781545 YP_009059.1 CDS DVUA0019 NC_005863.1 22786 24444 D type II DNA modification methyltransferase 22786..24444 Desulfovibrio vulgaris str. Hildenborough 2781544 YP_009060.1 CDS DVUA0020 NC_005863.1 24444 25184 D type II restriction endonuclease 24444..25184 Desulfovibrio vulgaris str. Hildenborough 2781543 YP_003858671.1 CDS DVUA204 NC_005863.1 25339 26583 R hypothetical protein complement(25339..26583) Desulfovibrio vulgaris str. Hildenborough 9714864 YP_009061.1 CDS DVUA0021 NC_005863.1 26632 27693 R identified by similarity to SP:P75830; match to protein family HMM PF00529; hypothetical protein complement(26632..27693) Desulfovibrio vulgaris str. Hildenborough 2781542 YP_009062.1 CDS DVUA0022 NC_005863.1 27702 28388 R identified by similarity to OMNI:NTL01TE1840; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(27702..28388) Desulfovibrio vulgaris str. Hildenborough 2781541 YP_009063.1 CDS DVUA0023 NC_005863.1 28487 29617 R identified by similarity to GP:22002528; match to protein family HMM PF02687; ABC transporter permease complement(28487..29617) Desulfovibrio vulgaris str. Hildenborough 2781540 YP_009064.1 CDS DVUA0024 NC_005863.1 29689 30828 R identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 factor interaction domain-containing protein complement(29689..30828) Desulfovibrio vulgaris str. Hildenborough 2781560 YP_009065.1 CDS DVUA0025 NC_005863.1 30780 31241 R identified by similarity to OMNI:TC0753; match to protein family HMM PF00072; response regulator receiver domain-containing protein complement(30780..31241) Desulfovibrio vulgaris str. Hildenborough 2781559 YP_009066.1 CDS DVUA0026 NC_005863.1 31267 31380 D hypothetical protein 31267..31380 Desulfovibrio vulgaris str. Hildenborough 2781558 YP_009067.1 CDS DVUA0027 NC_005863.1 31459 31569 R hypothetical protein complement(31459..31569) Desulfovibrio vulgaris str. Hildenborough 2781557 YP_009068.1 CDS DVUA0028 NC_005863.1 31587 31997 D hypothetical protein 31587..31997 Desulfovibrio vulgaris str. Hildenborough 2781556 YP_009069.1 CDS DVUA0029 NC_005863.1 32118 32798 R hypothetical protein complement(32118..32798) Desulfovibrio vulgaris str. Hildenborough 2781555 YP_009070.1 CDS DVUA0030 NC_005863.1 33321 34022 D hypothetical protein 33321..34022 Desulfovibrio vulgaris str. Hildenborough 2781554 YP_009071.1 CDS DVUA0031 NC_005863.1 34717 35583 R hypothetical protein complement(34717..35583) Desulfovibrio vulgaris str. Hildenborough 2781539 YP_009072.1 CDS DVUA0032 NC_005863.1 35708 36568 R hypothetical protein complement(35708..36568) Desulfovibrio vulgaris str. Hildenborough 2781538 YP_009073.1 CDS DVUA0033 NC_005863.1 36600 36797 D hypothetical protein 36600..36797 Desulfovibrio vulgaris str. Hildenborough 2781537 YP_009074.1 CDS DVUA0034 NC_005863.1 37254 40223 R identified by match to protein family HMM PF00899; hypothetical protein complement(37254..40223) Desulfovibrio vulgaris str. Hildenborough 2781536 YP_009075.1 CDS DVUA0035 NC_005863.1 40404 40751 R hypothetical protein complement(40404..40751) Desulfovibrio vulgaris str. Hildenborough 2781535 YP_009076.1 CDS DVUA0036 NC_005863.1 41239 43986 D identified by match to protein family HMM PF00515; TPR domain-containing protein 41239..43986 Desulfovibrio vulgaris str. Hildenborough 2781534 YP_009077.1 CDS DVUA0037 NC_005863.1 44190 45644 D identified by match to protein family HMM PF02397; sugar transferase domain-containing protein 44190..45644 Desulfovibrio vulgaris str. Hildenborough 2781553 YP_009078.1 CDS DVUA0038 NC_005863.1 45644 46450 D identified by match to protein family HMM PF02563; capsular polysaccharide transport protein 45644..46450 Desulfovibrio vulgaris str. Hildenborough 2781552 YP_009079.1 CDS DVUA0039 NC_005863.1 46451 47953 D identified by match to protein family HMM PF02706; chain length determinant family protein 46451..47953 Desulfovibrio vulgaris str. Hildenborough 2781551 YP_009080.1 CDS DVUA0040 NC_005863.1 47964 49082 D polysaccharide biosynthesis protein 47964..49082 Desulfovibrio vulgaris str. Hildenborough 2781550 YP_009081.1 CDS DVUA0041 NC_005863.1 49094 50413 D identified by similarity to SP:P45754; hypothetical protein 49094..50413 Desulfovibrio vulgaris str. Hildenborough 2781549 YP_009082.1 CDS DVUA0042 NC_005863.1 50590 51912 D putative lipoprotein 50590..51912 Desulfovibrio vulgaris str. Hildenborough 2781548 YP_009083.1 CDS DVUA0043 NC_005863.1 51965 52816 D identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 51965..52816 Desulfovibrio vulgaris str. Hildenborough 2781547 YP_009084.1 CDS DVUA0044 NC_005863.1 52878 53855 D identified by similarity to GB:CAD85710.1; hypothetical protein 52878..53855 Desulfovibrio vulgaris str. Hildenborough 2781486 YP_009085.1 CDS DVUA0045 NC_005863.1 53852 55468 D identified by match to protein family HMM PF01041; aminotransferase 53852..55468 Desulfovibrio vulgaris str. Hildenborough 2781494 YP_009086.1 CDS DVUA0046 NC_005863.1 55465 56913 D identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 55465..56913 Desulfovibrio vulgaris str. Hildenborough 2781493 YP_009087.1 CDS DVUA0047 NC_005863.1 56989 58305 D hypothetical protein 56989..58305 Desulfovibrio vulgaris str. Hildenborough 2781492 YP_009088.1 CDS DVUA0048 NC_005863.1 58360 59757 D identified by similarity to SP:Q02729; match to protein family HMM PF04932; exopolysaccharide production protein 58360..59757 Desulfovibrio vulgaris str. Hildenborough 2781491 YP_009089.1 CDS DVUA0049 NC_005863.1 59761 61230 D identified by match to protein family HMM PF01943; polysaccharide biosynthesis family protein 59761..61230 Desulfovibrio vulgaris str. Hildenborough 2781487 YP_009090.1 CDS DVUA0050 NC_005863.1 61246 62502 D identified by similarity to GP:28806454; hypothetical protein 61246..62502 Desulfovibrio vulgaris str. Hildenborough 2781615 YP_009091.1 CDS DVUA0051 NC_005863.1 62499 63887 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 62499..63887 Desulfovibrio vulgaris str. Hildenborough 2781490 YP_009092.1 CDS DVUA0052 NC_005863.1 64069 64737 D identified by similarity to OMNI:NTL01RSA1012; hypothetical protein 64069..64737 Desulfovibrio vulgaris str. Hildenborough 2781614 YP_009093.1 CDS DVUA0053 NC_005863.1 64988 65575 D identified by similarity to SP:Q58464; match to protein family HMM PF00132; hypothetical protein 64988..65575 Desulfovibrio vulgaris str. Hildenborough 2781613 YP_009094.1 CDS DVUA0054 NC_005863.1 65572 66972 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 65572..66972 Desulfovibrio vulgaris str. Hildenborough 2781489 YP_009095.1 CDS DVUA0055 NC_005863.1 66969 67922 D hypothetical protein 66969..67922 Desulfovibrio vulgaris str. Hildenborough 2781480 YP_009096.1 CDS DVUA0056 NC_005863.1 67912 68532 D hypothetical protein 67912..68532 Desulfovibrio vulgaris str. Hildenborough 2781479 YP_009097.1 CDS DVUA0057 NC_005863.1 68687 70117 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 68687..70117 Desulfovibrio vulgaris str. Hildenborough 2781478 YP_009098.1 CDS DVUA0058 NC_005863.1 70158 72893 D identified by match to protein family HMM PF02012; BNR/Asp-box repeat-containing protein 70158..72893 Desulfovibrio vulgaris str. Hildenborough 2781513 YP_009099.1 CDS DVUA0059 NC_005863.1 72938 74314 D identified by similarity to OMNI:NTL01ATA1012; hypothetical protein 72938..74314 Desulfovibrio vulgaris str. Hildenborough 2781512 YP_009100.1 CDS DVUA0060 NC_005863.1 74453 75838 D identified by match to protein family HMM PF01757; hypothetical protein 74453..75838 Desulfovibrio vulgaris str. Hildenborough 2781511 YP_009101.1 CDS DVUA0061 NC_005863.1 75835 77187 D identified by similarity to OMNI:NTL03PA04839; hypothetical protein 75835..77187 Desulfovibrio vulgaris str. Hildenborough 2781510 YP_009102.1 CDS DVUA0062 NC_005863.1 77184 78479 D identified by similarity to OMNI:NTL01ATA1012; hypothetical protein 77184..78479 Desulfovibrio vulgaris str. Hildenborough 2781509 YP_009103.1 CDS DVUA0063 NC_005863.1 78536 80092 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Orn/DAP/Arg family decarboxylase 78536..80092 Desulfovibrio vulgaris str. Hildenborough 2781508 YP_009104.1 CDS DVUA0064 NC_005863.1 80843 82885 D identified by similarity to GP:2598023; hypothetical protein 80843..82885 Desulfovibrio vulgaris str. Hildenborough 2781507 YP_009105.1 CDS DVUA0065 NC_005863.1 82882 84918 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 82882..84918 Desulfovibrio vulgaris str. Hildenborough 2781601 YP_009106.1 CDS DVUA0066 NC_005863.1 85372 86784 D identified by match to protein family HMM PF01734; patatin family phospholipase 85372..86784 Desulfovibrio vulgaris str. Hildenborough 2781600 YP_009107.1 CDS DVUA0067 NC_005863.1 87157 88281 R identified by match to protein family HMM PF01757; hypothetical protein complement(87157..88281) Desulfovibrio vulgaris str. Hildenborough 2781599 YP_009108.1 CDS DVUA0068 NC_005863.1 88333 90315 R hypothetical protein complement(88333..90315) Desulfovibrio vulgaris str. Hildenborough 2781598 YP_009109.1 CDS DVUA0069 NC_005863.1 90871 92028 R identified by match to protein family HMM PF00535; GtrA family protein, selenocysteine-containing complement(90871..92028) Desulfovibrio vulgaris str. Hildenborough 2781597 YP_009110.1 CDS DVUA0070 NC_005863.1 92091 94022 R identified by similarity to OMNI:NTL01TE2386; hypothetical protein complement(92091..94022) Desulfovibrio vulgaris str. Hildenborough 2781596 YP_009111.1 CDS DVUA0071 NC_005863.1 94115 96271 R identified by match to protein family HMM PF00534; match to protein family HMM PF00535; glycosyl transferase, group 1/2 family protein complement(94115..96271) Desulfovibrio vulgaris str. Hildenborough 2781607 YP_009112.1 CDS DVUA0072 NC_005863.1 96400 97737 R identified by similarity to SP:P71237; match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(96400..97737) Desulfovibrio vulgaris str. Hildenborough 2781606 YP_009113.1 CDS DVUA0073 NC_005863.1 97846 100515 R identified by similarity to SP:O05272; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase (glutamine-hydrolyzing) complement(97846..100515) Desulfovibrio vulgaris str. Hildenborough 2781605 YP_009114.1 CDS DVUA0074 NC_005863.1 100606 101295 R identified by match to protein family HMM PF00685; sulfotransferase family protein complement(100606..101295) Desulfovibrio vulgaris str. Hildenborough 2781604 YP_009115.1 CDS DVUA0075 NC_005863.1 101383 102789 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(101383..102789) Desulfovibrio vulgaris str. Hildenborough 2781603 YP_009116.1 CDS DVUA0076 NC_005863.1 102804 104198 R identified by similarity to GP:22759343; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(102804..104198) Desulfovibrio vulgaris str. Hildenborough 2781602 YP_009117.1 CDS DVUA0077 NC_005863.1 104230 105114 R identified by match to protein family HMM PF01061; ABC transporter permease complement(104230..105114) Desulfovibrio vulgaris str. Hildenborough 2781612 YP_009118.1 CDS DVUA0078 NC_005863.1 105230 105388 R hypothetical protein complement(105230..105388) Desulfovibrio vulgaris str. Hildenborough 2781611 YP_009119.1 CDS cysC NC_005863.1 105582 106268 D identified by similarity to GP:11992144; match to protein family HMM PF01583; match to protein family HMM TIGR00455; adenylylsulfate kinase 105582..106268 Desulfovibrio vulgaris str. Hildenborough 2781533 YP_009120.1 CDS DVUA0080 NC_005863.1 106366 107247 D identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 106366..107247 Desulfovibrio vulgaris str. Hildenborough 2781610 YP_009121.1 CDS DVUA0081 NC_005863.1 107247 109361 D identified by match to protein family HMM PF00534; match to protein family HMM PF00535; glycosyl transferase, group 1/2 family protein 107247..109361 Desulfovibrio vulgaris str. Hildenborough 2781532 YP_009122.1 CDS DVUA0082 NC_005863.1 109666 110697 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family site specific recombinase complement(109666..110697) Desulfovibrio vulgaris str. Hildenborough 2781531 YP_009123.1 CDS DVUA0083 NC_005863.1 110806 110934 D hypothetical protein 110806..110934 Desulfovibrio vulgaris str. Hildenborough 2781530 YP_009124.1 CDS DVUA0084 NC_005863.1 111110 111301 D AbrB family transcriptional regulator 111110..111301 Desulfovibrio vulgaris str. Hildenborough 2781529 YP_009125.1 CDS DVUA0085 NC_005863.1 111356 114886 D identified by similarity to OMNI:NTL01ST4343; hypothetical protein 111356..114886 Desulfovibrio vulgaris str. Hildenborough 2781528 YP_009126.1 CDS DVUA0086 NC_005863.1 114998 116089 R identified by match to protein family HMM PF00072; match to protein family HMM PF01966; response regulator complement(114998..116089) Desulfovibrio vulgaris str. Hildenborough 2781566 YP_009127.1 CDS DVUA0087 NC_005863.1 116475 119588 R identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR01369; sensory box histidine kinase complement(116475..119588) Desulfovibrio vulgaris str. Hildenborough 2781565 YP_009128.1 CDS DVUA0088 NC_005863.1 119777 120796 R identified by similarity to OMNI:VCA0212; hypothetical protein complement(119777..120796) Desulfovibrio vulgaris str. Hildenborough 2781609 YP_009129.1 CDS DVUA0089 NC_005863.1 121289 121906 R hypothetical protein complement(121289..121906) Desulfovibrio vulgaris str. Hildenborough 2781564 YP_009130.1 CDS DVUA0090 NC_005863.1 122486 123358 D identified by similarity to SP:Q46831; hypothetical protein 122486..123358 Desulfovibrio vulgaris str. Hildenborough 2781563 YP_009131.1 CDS katA NC_005863.1 123495 124952 D identified by similarity to SP:P45737; match to protein family HMM PF00199; catalase 123495..124952 Desulfovibrio vulgaris str. Hildenborough 2781562 YP_009132.1 CDS DVUA0092 NC_005863.1 125171 125650 R hypothetical protein complement(125171..125650) Desulfovibrio vulgaris str. Hildenborough 2781561 YP_009133.1 CDS DVUA0093 NC_005863.1 125839 127176 R identified by similarity to SP:P17551; match to protein family HMM PF02417; chromate transport family protein complement(125839..127176) Desulfovibrio vulgaris str. Hildenborough 2781624 YP_009134.1 CDS chrB NC_005863.1 127186 128190 R identified by similarity to SP:P17552; chrB protein complement(127186..128190) Desulfovibrio vulgaris str. Hildenborough 2781608 YP_009135.1 CDS DVUA0095 NC_005863.1 128594 129079 D hypothetical protein 128594..129079 Desulfovibrio vulgaris str. Hildenborough 2781623 YP_009136.1 CDS DVUA0096 NC_005863.1 129163 130374 D identified by similarity to OMNI:AF1325; match to protein family HMM PF00083; major facilitator superfamily protein 129163..130374 Desulfovibrio vulgaris str. Hildenborough 2781622 YP_009137.1 CDS DVUA0097 NC_005863.1 130707 132206 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 130707..132206 Desulfovibrio vulgaris str. Hildenborough 2781621 YP_009138.1 CDS DVUA0098 NC_005863.1 132351 133400 R identified by similarity to SP:Q8TW08; dehydrogenase complement(132351..133400) Desulfovibrio vulgaris str. Hildenborough 2781506 YP_009139.1 CDS DVUA0099 NC_005863.1 133570 135753 R identified by match to protein family HMM PF00672; HAMP domain-containing protein complement(133570..135753) Desulfovibrio vulgaris str. Hildenborough 2781505 YP_009140.1 CDS DVUA0100 NC_005863.1 136112 137839 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator complement(136112..137839) Desulfovibrio vulgaris str. Hildenborough 2781504 YP_009141.1 CDS DVUA0101 NC_005863.1 137887 138927 R identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404; hrpY/hrcU family type III secretion protein complement(137887..138927) Desulfovibrio vulgaris str. Hildenborough 2781503 YP_009142.1 CDS escT NC_005863.1 138924 139739 R identified by similarity to GP:1181175; match to protein family HMM PF01311; type III secretion inner membrane protein complement(138924..139739) Desulfovibrio vulgaris str. Hildenborough 2781502 YP_009143.1 CDS invX NC_005863.1 139746 140006 R identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403; HrpO family type III secretion protein complement(139746..140006) Desulfovibrio vulgaris str. Hildenborough 2781594 YP_009144.1 CDS DVUA0104 NC_005863.1 140328 142421 R identified by similarity to SP:P31487; similarity to SP:P35533; match to protein family HMM PF00771; match to protein family HMM TIGR01399; type III secretion inner membrane protein HrcV family complement(140328..142421) Desulfovibrio vulgaris str. Hildenborough 2781593 YP_009145.1 CDS DVUA0105 NC_005863.1 143145 143519 R identified by similarity to GB:BAC59928.1; hypothetical protein complement(143145..143519) Desulfovibrio vulgaris str. Hildenborough 2781488 YP_009146.1 CDS DVUA0106 NC_005863.1 143522 144646 R identified by match to protein family HMM PF02523; YopN family type III secretion target protein complement(143522..144646) Desulfovibrio vulgaris str. Hildenborough 2781592 YP_009147.1 CDS DVUA0107 NC_005863.1 144885 144989 D hypothetical protein 144885..144989 Desulfovibrio vulgaris str. Hildenborough 2781591 YP_003858672.1 CDS DVUA203 NC_005863.1 145353 145655 D hypothetical protein 145353..145655 Desulfovibrio vulgaris str. Hildenborough 9714865 YP_009148.2 CDS DVUA0108 NC_005863.1 145580 146200 D hypothetical protein 145580..146200 Desulfovibrio vulgaris str. Hildenborough 2781590 YP_009149.1 CDS DVUA0109 NC_005863.1 146209 146709 D identified by similarity to GB:AAO91772.1; LcrH/SycD family type III secretion system chaperone 146209..146709 Desulfovibrio vulgaris str. Hildenborough 2781620 YP_009150.1 CDS DVUA0110 NC_005863.1 146706 147713 D type III secretion system target, YopB family 146706..147713 Desulfovibrio vulgaris str. Hildenborough 2781586 YP_009151.1 CDS DVUA0111 NC_005863.1 147662 148558 D identified by similarity to GB:AAL72351.1; type III secretion system protein IpaC family 147662..148558 Desulfovibrio vulgaris str. Hildenborough 2781619 YP_003858673.1 CDS DVUA201 NC_005863.1 148611 149066 D hypothetical protein 148611..149066 Desulfovibrio vulgaris str. Hildenborough 9714866 YP_009152.1 CDS DVUA0112 NC_005863.1 149369 151243 D identified by match to protein family HMM PF00263; match to protein family HMM PF03958; type III secretion system protein YscC family 149369..151243 Desulfovibrio vulgaris str. Hildenborough 2781618 YP_009153.1 CDS DVUA0113 NC_005863.1 151240 153048 D identified by similarity to SP:Q01245; YscD family type III secretion protein 151240..153048 Desulfovibrio vulgaris str. Hildenborough 2781617 YP_009154.1 CDS DVUA0114 NC_005863.1 153041 153250 D hypothetical protein 153041..153250 Desulfovibrio vulgaris str. Hildenborough 2781616 YP_009155.1 CDS DVUA0115 NC_005863.1 153276 153527 D identified by similarity to PIR:D86044; match to protein family HMM TIGR02105; type III secretion system protein YscF family 153276..153527 Desulfovibrio vulgaris str. Hildenborough 2781477 YP_009156.1 CDS DVUA0116 NC_005863.1 153722 154087 D identified by similarity to GP:10189650; hypothetical protein 153722..154087 Desulfovibrio vulgaris str. Hildenborough 2781476 YP_009157.1 CDS escJ NC_005863.1 154970 155785 D identified by similarity to SP:Q01251; match to protein family HMM PF01514; type III secretion lipoprotein 154970..155785 Desulfovibrio vulgaris str. Hildenborough 2781475 YP_003858674.1 CDS DVUA200 NC_005863.1 155792 156715 D hypothetical protein 155792..156715 Desulfovibrio vulgaris str. Hildenborough 9714867 YP_009158.1 CDS DVUA0118 NC_005863.1 156694 157311 D identified by similarity to GB:AAC38611.1; type III secretion system protein 156694..157311 Desulfovibrio vulgaris str. Hildenborough 2781522 YP_009159.1 CDS DVUA0119 NC_005863.1 157639 158955 D identified by similarity to SP:P40290; match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; type III secretion system ATPase 157639..158955 Desulfovibrio vulgaris str. Hildenborough 2781474 YP_009160.1 CDS DVUA0120 NC_005863.1 159466 160158 D identified by similarity to GB:BAC59933.1; type III secretion protein 159466..160158 Desulfovibrio vulgaris str. Hildenborough 2781485 YP_009161.1 CDS DVUA0121 NC_005863.1 160160 161614 D identified by match to protein family HMM PF01052; type III secretion system protein YopQ family 160160..161614 Desulfovibrio vulgaris str. Hildenborough 2781473 YP_009162.1 CDS DVUA0122 NC_005863.1 161611 162261 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 161611..162261 Desulfovibrio vulgaris str. Hildenborough 2781527 YP_009163.1 CDS DVUA0123 NC_005863.1 162292 162627 D identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor 162292..162627 Desulfovibrio vulgaris str. Hildenborough 2781526 YP_009164.1 CDS DVUA0124 NC_005863.1 162643 163059 D identified by similarity to OMNI:NTL01SS01077; sigma factor serine-protein kinase 162643..163059 Desulfovibrio vulgaris str. Hildenborough 2781525 YP_009165.1 CDS DVUA0125 NC_005863.1 163070 164422 D identified by match to protein family HMM PF01464; Slt family transglycosylase 163070..164422 Desulfovibrio vulgaris str. Hildenborough 2781524 YP_009166.1 CDS DVUA0126 NC_005863.1 164796 165263 D identified by similarity to OMNI:CP0368; hypothetical protein 164796..165263 Desulfovibrio vulgaris str. Hildenborough 2781523 YP_003858675.1 CDS DVUA202 NC_005863.1 165467 167803 D hypothetical protein 165467..167803 Desulfovibrio vulgaris str. Hildenborough 9714868 YP_009168.1 CDS DVUA0128 NC_005863.1 168022 168168 R hypothetical protein complement(168022..168168) Desulfovibrio vulgaris str. Hildenborough 2781584 YP_009169.1 CDS cas3 NC_005863.1 168254 170362 D identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 domain-containing protein 168254..170362 Desulfovibrio vulgaris str. Hildenborough 2781583 YP_009170.1 CDS DVUA0130 NC_005863.1 170376 171059 D identified by match to protein family HMM TIGR01876; CRISPR-associated Csd1 family protein 170376..171059 Desulfovibrio vulgaris str. Hildenborough 2781521 YP_009171.1 CDS DVUA0131 NC_005863.1 171056 172894 D identified by match to protein family HMM TIGR01863; CRISPR-associated Csd1 family protein 171056..172894 Desulfovibrio vulgaris str. Hildenborough 2781582 YP_009172.1 CDS DVUA0132 NC_005863.1 172897 173769 D identified by match to protein family HMM PF05107; match to protein family HMM TIGR01595; CRISPR-associated Csh2 family protein 172897..173769 Desulfovibrio vulgaris str. Hildenborough 2781595 YP_009173.1 CDS DVUA0133 NC_005863.1 173771 174409 D identified by match to protein family HMM TIGR00372; CRISPR-associated Cas4 family protein 173771..174409 Desulfovibrio vulgaris str. Hildenborough 2781587 YP_009174.1 CDS cas1 NC_005863.1 174393 175424 D identified by similarity to OMNI:CT1130; match to protein family HMM PF01867; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 174393..175424 Desulfovibrio vulgaris str. Hildenborough 2781520 YP_009175.1 CDS DVUA0135 NC_005863.1 175411 175719 D identified by similarity to OMNI:CT1129; match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 175411..175719 Desulfovibrio vulgaris str. Hildenborough 2781581 YP_009176.1 CDS zupT NC_005863.1 177828 178661 R identified by similarity to SP:P24198; match to protein family HMM PF02535; zinc transporter ZupT complement(177828..178661) Desulfovibrio vulgaris str. Hildenborough 2781580 YP_009177.1 CDS DVUA0137 NC_005863.1 178783 179430 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; response regulator complement(178783..179430) Desulfovibrio vulgaris str. Hildenborough 2781482 YP_009178.1 CDS DVUA0138 NC_005863.1 179417 181501 R identified by match to protein family HMM PF02518; sensor histidine kinase complement(179417..181501) Desulfovibrio vulgaris str. Hildenborough 2781579 YP_009179.1 CDS DVUA0139 NC_005863.1 181665 183644 R identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; outer membrane autotransporter complement(181665..183644) Desulfovibrio vulgaris str. Hildenborough 2781578 YP_009180.1 CDS DVUA0140 NC_005863.1 183659 183862 R hypothetical protein complement(183659..183862) Desulfovibrio vulgaris str. Hildenborough 2781577 YP_009181.1 CDS DVUA0141 NC_005863.1 183952 184188 R hypothetical protein complement(183952..184188) Desulfovibrio vulgaris str. Hildenborough 2781576 YP_009182.1 CDS DVUA0142 NC_005863.1 184272 184766 R hypothetical protein complement(184272..184766) Desulfovibrio vulgaris str. Hildenborough 2781588 YP_009183.1 CDS nifA-2 NC_005863.1 184786 186333 R identified by similarity to SP:P27713; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01817; Nif-specific regulatory protein complement(184786..186333) Desulfovibrio vulgaris str. Hildenborough 2781575 YP_009184.1 CDS DVUA0144 NC_005863.1 186548 186691 R hypothetical protein complement(186548..186691) Desulfovibrio vulgaris str. Hildenborough 2781574 YP_009185.1 CDS DVUA0145 NC_005863.1 187348 191274 D identified by similarity to GB:AAP07854.1; hypothetical protein 187348..191274 Desulfovibrio vulgaris str. Hildenborough 2781589 YP_009186.1 CDS DVUA0146 NC_005863.1 191285 191755 D hypothetical protein 191285..191755 Desulfovibrio vulgaris str. Hildenborough 2781573 YP_009187.1 CDS DVUA0147 NC_005863.1 192334 193575 D identified by similarity to GP:10189658; hypothetical protein 192334..193575 Desulfovibrio vulgaris str. Hildenborough 2781572 YP_009188.1 CDS DVUA0148 NC_005863.1 193583 196600 D identified by match to protein family HMM PF00083; major facilitator superfamily protein 193583..196600 Desulfovibrio vulgaris str. Hildenborough 2781571 YP_009189.1 CDS DVUA0149 NC_005863.1 196632 198416 D hypothetical protein 196632..198416 Desulfovibrio vulgaris str. Hildenborough 2781570 YP_009190.1 CDS DVUA0150 NC_005863.1 198609 199346 R identified by match to protein family HMM PF00497; solute-binding family 1 protein complement(198609..199346) Desulfovibrio vulgaris str. Hildenborough 2781484 YP_009191.1 CDS DVUA0151 NC_005863.1 199858 200250 D DNA-binding protein 199858..200250 Desulfovibrio vulgaris str. Hildenborough 2781569 YP_009192.1 CDS DVUA0152 NC_005863.1 200240 201535 D identified by similarity to GP:11127715; hypothetical protein 200240..201535 Desulfovibrio vulgaris str. Hildenborough 2781568 DVU_tRNA-Ala-1 tRNA DVU_tRNA-Ala-1 NC_002937.3 19895 19970 D tRNA-Ala 19895..19970 Desulfovibrio vulgaris str. Hildenborough 2796549 DVU_tRNA-Ala-2 tRNA DVU_tRNA-Ala-2 NC_002937.3 30047 30122 D tRNA-Ala 30047..30122 Desulfovibrio vulgaris str. Hildenborough 2796781 DVU_tRNA-Ile-1 tRNA DVU_tRNA-Ile-1 NC_002937.3 107515 107591 D tRNA-Ile 107515..107591 Desulfovibrio vulgaris str. Hildenborough 2794760 DVU_tRNA-Ala-3 tRNA DVU_tRNA-Ala-3 NC_002937.3 107614 107689 D tRNA-Ala 107614..107689 Desulfovibrio vulgaris str. Hildenborough 2794761 DVU_tRNA-Leu-1 tRNA DVU_tRNA-Leu-1 NC_002937.3 189726 189812 R tRNA-Leu complement(189726..189812) Desulfovibrio vulgaris str. Hildenborough 2794926 DVU_tRNA-Pseudo-1 tRNA DVU_tRNA-Pseudo-1 NC_002937.3 233143 233215 R tRNA-OTHER complement(233143..233215) Desulfovibrio vulgaris str. Hildenborough 2795714 DVU_tRNA-Lys-1 tRNA DVU_tRNA-Lys-1 NC_002937.3 270532 270607 R tRNA-Lys complement(270532..270607) Desulfovibrio vulgaris str. Hildenborough 2796586 DVU_tRNA-Ile-2 tRNA DVU_tRNA-Ile-2 NC_002937.3 296511 296587 D tRNA-Ile 296511..296587 Desulfovibrio vulgaris str. Hildenborough 2794369 DVU_tRNA-Ala-4 tRNA DVU_tRNA-Ala-4 NC_002937.3 296610 296685 D tRNA-Ala 296610..296685 Desulfovibrio vulgaris str. Hildenborough 2794370 DVU_tRNA-Val-1 tRNA DVU_tRNA-Val-1 NC_002937.3 318835 318910 D tRNA-Val 318835..318910 Desulfovibrio vulgaris str. Hildenborough 2795001 DVU_tRNA-Asp-1 tRNA DVU_tRNA-Asp-1 NC_002937.3 318914 318990 D tRNA-Asp 318914..318990 Desulfovibrio vulgaris str. Hildenborough 2795065 DVU_tRNA-Asp-2 tRNA DVU_tRNA-Asp-2 NC_002937.3 319062 319138 D tRNA-Asp 319062..319138 Desulfovibrio vulgaris str. Hildenborough 2795066 DVU_tRNA-Thr-1 tRNA DVU_tRNA-Thr-1 NC_002937.3 407052 407127 R tRNA-Thr complement(407052..407127) Desulfovibrio vulgaris str. Hildenborough 2794759 DVU_tRNA-Met-1 tRNA DVU_tRNA-Met-1 NC_002937.3 417073 417149 D tRNA-Met 417073..417149 Desulfovibrio vulgaris str. Hildenborough 2794439 DVU_tRNA-Leu-2 tRNA DVU_tRNA-Leu-2 NC_002937.3 514247 514333 R tRNA-Leu complement(514247..514333) Desulfovibrio vulgaris str. Hildenborough 2793372 DVU_tRNA-Glu-1 tRNA DVU_tRNA-Glu-1 NC_002937.3 672676 672752 R tRNA-Glu complement(672676..672752) Desulfovibrio vulgaris str. Hildenborough 2793530 DVU_tRNA-Glu-2 tRNA DVU_tRNA-Glu-2 NC_002937.3 709268 709344 D tRNA-Glu 709268..709344 Desulfovibrio vulgaris str. Hildenborough 2794109 DVU_tRNA-Ser-1 tRNA DVU_tRNA-Ser-1 NC_002937.3 775707 775798 D tRNA-Ser 775707..775798 Desulfovibrio vulgaris str. Hildenborough 2794451 DVU_tRNA-Ser-2 tRNA DVU_tRNA-Ser-2 NC_002937.3 878976 879067 R tRNA-Ser complement(878976..879067) Desulfovibrio vulgaris str. Hildenborough 2794514 DVU_tRNA-Ser-3 tRNA DVU_tRNA-Ser-3 NC_002937.3 911334 911428 R tRNA-Ser complement(911334..911428) Desulfovibrio vulgaris str. Hildenborough 2796169 DVU_tRNA-Lys-2 tRNA DVU_tRNA-Lys-2 NC_002937.3 1093354 1093429 R tRNA-Lys complement(1093354..1093429) Desulfovibrio vulgaris str. Hildenborough 2795113 DVU_tRNA-Lys-3 tRNA DVU_tRNA-Lys-3 NC_002937.3 1093621 1093696 R tRNA-Lys complement(1093621..1093696) Desulfovibrio vulgaris str. Hildenborough 2795114 DVU_tRNA-Thr-2 tRNA DVU_tRNA-Thr-2 NC_002937.3 1203891 1203966 D tRNA-Thr 1203891..1203966 Desulfovibrio vulgaris str. Hildenborough 2794342 DVU_tRNA-SeC(p)-1 tRNA DVU_tRNA-SeC(p)-1 NC_002937.3 1369507 1369596 R tRNA-Sec complement(1369507..1369596) Desulfovibrio vulgaris str. Hildenborough 2794268 DVU_tRNA-Leu-3 tRNA DVU_tRNA-Leu-3 NC_002937.3 1409622 1409706 D tRNA-Leu 1409622..1409706 Desulfovibrio vulgaris str. Hildenborough 2794581 DVU_tRNA-Met-2 tRNA DVU_tRNA-Met-2 NC_002937.3 1536123 1536198 R tRNA-Met complement(1536123..1536198) Desulfovibrio vulgaris str. Hildenborough 2794824 DVU_tRNA-Ser-4 tRNA DVU_tRNA-Ser-4 NC_002937.3 1596079 1596173 R tRNA-Ser complement(1596079..1596173) Desulfovibrio vulgaris str. Hildenborough 2793945 DVU_tRNA-Arg-1 tRNA DVU_tRNA-Arg-1 NC_002937.3 1648221 1648297 R tRNA-Arg complement(1648221..1648297) Desulfovibrio vulgaris str. Hildenborough 2795736 DVU_tRNA-Arg-2 tRNA DVU_tRNA-Arg-2 NC_002937.3 1648317 1648393 R tRNA-Arg complement(1648317..1648393) Desulfovibrio vulgaris str. Hildenborough 2795737 DVU_tRNA-Arg-3 tRNA DVU_tRNA-Arg-3 NC_002937.3 1648426 1648502 R tRNA-Arg complement(1648426..1648502) Desulfovibrio vulgaris str. Hildenborough 2795738 DVU_tRNA-Gln-1 tRNA DVU_tRNA-Gln-1 NC_002937.3 1658278 1658353 R tRNA-Gln complement(1658278..1658353) Desulfovibrio vulgaris str. Hildenborough 2796187 DVU_tRNA-Pro-1 tRNA DVU_tRNA-Pro-1 NC_002937.3 1723546 1723622 R tRNA-Pro complement(1723546..1723622) Desulfovibrio vulgaris str. Hildenborough 2796140 DVU_tRNA-Met-3 tRNA DVU_tRNA-Met-3 NC_002937.3 1740153 1740229 R tRNA-Met complement(1740153..1740229) Desulfovibrio vulgaris str. Hildenborough 2795898 DVU_tRNA-Leu-4 tRNA DVU_tRNA-Leu-4 NC_002937.3 1755794 1755880 R tRNA-Leu complement(1755794..1755880) Desulfovibrio vulgaris str. Hildenborough 2794398 DVU_tRNA-Arg-4 tRNA DVU_tRNA-Arg-4 NC_002937.3 1770704 1770780 D tRNA-Arg 1770704..1770780 Desulfovibrio vulgaris str. Hildenborough 2795828 DVU_tRNA-Leu-5 tRNA DVU_tRNA-Leu-5 NC_002937.3 2069693 2069779 D tRNA-Leu 2069693..2069779 Desulfovibrio vulgaris str. Hildenborough 2793797 DVU_tRNA-Met-4 tRNA DVU_tRNA-Met-4 NC_002937.3 2129162 2129238 R tRNA-Met complement(2129162..2129238) Desulfovibrio vulgaris str. Hildenborough 2794548 DVU_tRNA-Pro-2 tRNA DVU_tRNA-Pro-2 NC_002937.3 2163497 2163574 D tRNA-Pro 2163497..2163574 Desulfovibrio vulgaris str. Hildenborough 2793456 DVU_tRNA-Gly-1 tRNA DVU_tRNA-Gly-1 NC_002937.3 2250385 2250459 D tRNA-Gly 2250385..2250459 Desulfovibrio vulgaris str. Hildenborough 2793410 DVU_tRNA-Cys-1 tRNA DVU_tRNA-Cys-1 NC_002937.3 2250471 2250545 D tRNA-Cys 2250471..2250545 Desulfovibrio vulgaris str. Hildenborough 2793411 DVU_tRNA-Gly-2 tRNA DVU_tRNA-Gly-2 NC_002937.3 2250553 2250627 D tRNA-Gly 2250553..2250627 Desulfovibrio vulgaris str. Hildenborough 2793412 DVU_tRNA-Gly-3 tRNA DVU_tRNA-Gly-3 NC_002937.3 2250660 2250734 D tRNA-Gly 2250660..2250734 Desulfovibrio vulgaris str. Hildenborough 2793413 DVU_tRNA-Gly-4 tRNA DVU_tRNA-Gly-4 NC_002937.3 2303987 2304061 D tRNA-Gly 2303987..2304061 Desulfovibrio vulgaris str. Hildenborough 2793672 DVU_tRNA-Ala-5 tRNA DVU_tRNA-Ala-5 NC_002937.3 2356165 2356240 D tRNA-Ala 2356165..2356240 Desulfovibrio vulgaris str. Hildenborough 2794084 DVU_tRNA-Asn-1 tRNA DVU_tRNA-Asn-1 NC_002937.3 2474950 2475025 D tRNA-Asn 2474950..2475025 Desulfovibrio vulgaris str. Hildenborough 2796110 DVU_tRNA-Asn-2 tRNA DVU_tRNA-Asn-2 NC_002937.3 2493503 2493578 D tRNA-Asn 2493503..2493578 Desulfovibrio vulgaris str. Hildenborough 2795293 DVU_tRNA-Ala-6 tRNA DVU_tRNA-Ala-6 NC_002937.3 2562567 2562642 R tRNA-Ala complement(2562567..2562642) Desulfovibrio vulgaris str. Hildenborough 2795317 DVU_tRNA-Ile-3 tRNA DVU_tRNA-Ile-3 NC_002937.3 2562665 2562741 R tRNA-Ile complement(2562665..2562741) Desulfovibrio vulgaris str. Hildenborough 2795318 DVU_tRNA-Val-2 tRNA DVU_tRNA-Val-2 NC_002937.3 2651265 2651339 R tRNA-Val complement(2651265..2651339) Desulfovibrio vulgaris str. Hildenborough 2795725 DVU_tRNA-Leu-6 tRNA DVU_tRNA-Leu-6 NC_002937.3 2691138 2691224 R tRNA-Leu complement(2691138..2691224) Desulfovibrio vulgaris str. Hildenborough 2794985 DVU_tRNA-Ala-7 tRNA DVU_tRNA-Ala-7 NC_002937.3 2695966 2696041 R tRNA-Ala complement(2695966..2696041) Desulfovibrio vulgaris str. Hildenborough 2794989 DVU_tRNA-Ile-4 tRNA DVU_tRNA-Ile-4 NC_002937.3 2696064 2696140 R tRNA-Ile complement(2696064..2696140) Desulfovibrio vulgaris str. Hildenborough 2794990 DVU_tRNA-Leu-7 tRNA DVU_tRNA-Leu-7 NC_002937.3 2834620 2834706 R tRNA-Leu complement(2834620..2834706) Desulfovibrio vulgaris str. Hildenborough 2795935 DVU_tRNA-Arg-5 tRNA DVU_tRNA-Arg-5 NC_002937.3 2977658 2977734 R tRNA-Arg complement(2977658..2977734) Desulfovibrio vulgaris str. Hildenborough 2795546 DVU_tRNA-Thr-3 tRNA DVU_tRNA-Thr-3 NC_002937.3 3019037 3019112 D tRNA-Thr 3019037..3019112 Desulfovibrio vulgaris str. Hildenborough 2794061 DVU_tRNA-Tyr-1 tRNA DVU_tRNA-Tyr-1 NC_002937.3 3019119 3019204 D tRNA-Tyr 3019119..3019204 Desulfovibrio vulgaris str. Hildenborough 2794062 DVU_tRNA-Gly-5 tRNA DVU_tRNA-Gly-5 NC_002937.3 3019262 3019338 D tRNA-Gly 3019262..3019338 Desulfovibrio vulgaris str. Hildenborough 2794063 DVU_tRNA-Thr-4 tRNA DVU_tRNA-Thr-4 NC_002937.3 3019375 3019450 D tRNA-Thr 3019375..3019450 Desulfovibrio vulgaris str. Hildenborough 2794064 DVU_tRNA-Trp-1 tRNA DVU_tRNA-Trp-1 NC_002937.3 3020869 3020945 D tRNA-Trp 3020869..3020945 Desulfovibrio vulgaris str. Hildenborough 2793959 DVU_tRNA-Gln-2 tRNA DVU_tRNA-Gln-2 NC_002937.3 3061754 3061828 D tRNA-Gln 3061754..3061828 Desulfovibrio vulgaris str. Hildenborough 2796505 DVU_tRNA-Glu-3 tRNA DVU_tRNA-Glu-3 NC_002937.3 3061846 3061923 D tRNA-Glu 3061846..3061923 Desulfovibrio vulgaris str. Hildenborough 2796506 DVU_tRNA-Pro-3 tRNA DVU_tRNA-Pro-3 NC_002937.3 3163832 3163908 D tRNA-Pro 3163832..3163908 Desulfovibrio vulgaris str. Hildenborough 2796456 DVU_tRNA-Ala-8 tRNA DVU_tRNA-Ala-8 NC_002937.3 3250360 3250435 R tRNA-Ala complement(3250360..3250435) Desulfovibrio vulgaris str. Hildenborough 2795979 DVU_tRNA-Ile-5 tRNA DVU_tRNA-Ile-5 NC_002937.3 3250458 3250534 R tRNA-Ile complement(3250458..3250534) Desulfovibrio vulgaris str. Hildenborough 2795980 DVU_tRNA-Val-3 tRNA DVU_tRNA-Val-3 NC_002937.3 3287469 3287544 R tRNA-Val complement(3287469..3287544) Desulfovibrio vulgaris str. Hildenborough 2793989 DVU_tRNA-Phe-1 tRNA DVU_tRNA-Phe-1 NC_002937.3 3422895 3422970 R tRNA-Phe complement(3422895..3422970) Desulfovibrio vulgaris str. Hildenborough 2793852 DVU_tRNA-His-1 tRNA DVU_tRNA-His-1 NC_002937.3 3433963 3434038 D tRNA-His 3433963..3434038 Desulfovibrio vulgaris str. Hildenborough 2793862 DVU_tRNA-Arg-6 tRNA DVU_tRNA-Arg-6 NC_002937.3 3484533 3484609 R tRNA-Arg complement(3484533..3484609) Desulfovibrio vulgaris str. Hildenborough 2796042 Dv16SA rRNA rrsA NC_002937.3 105901 107441 D 16S ribosomal RNA 105901..107441 Desulfovibrio vulgaris str. Hildenborough 2793581 Dv23SA rRNA rrlA NC_002937.3 107842 110762 D 23S ribosomal RNA 107842..110762 Desulfovibrio vulgaris str. Hildenborough 2795068 Dv5SA rRNA rrfA NC_002937.3 110870 110986 D 5S ribosomal RNA 110870..110986 Desulfovibrio vulgaris str. Hildenborough 2794252 Dv16SB rRNA rrsB NC_002937.3 294897 296437 D 16S ribosomal RNA 294897..296437 Desulfovibrio vulgaris str. Hildenborough 2794504 Dv23SB rRNA rrlB NC_002937.3 296838 299758 D 23S ribosomal RNA 296838..299758 Desulfovibrio vulgaris str. Hildenborough 2795002 Dv5SB rRNA rrfB NC_002937.3 299866 299982 D 5S ribosomal RNA 299866..299982 Desulfovibrio vulgaris str. Hildenborough 2795003 DV_r01 rRNA DV_r01 NC_002937.3 2559112 2559228 R 5S ribosomal RNA complement(2559112..2559228) Desulfovibrio vulgaris str. Hildenborough 5228431 Dv5SC rRNA rrfC NC_002937.3 2559270 2559386 R 5S ribosomal RNA complement(2559270..2559386) Desulfovibrio vulgaris str. Hildenborough 2796633 Dv23SC rRNA rrlC NC_002937.3 2559494 2562414 R 23S ribosomal RNA complement(2559494..2562414) Desulfovibrio vulgaris str. Hildenborough 2796634 Dv16SC rRNA rrsC NC_002937.3 2562815 2564355 R 16S ribosomal RNA complement(2562815..2564355) Desulfovibrio vulgaris str. Hildenborough 2795319 Dv5SD rRNA rrfD NC_002937.3 2692669 2692785 R 5S ribosomal RNA complement(2692669..2692785) Desulfovibrio vulgaris str. Hildenborough 2794987 Dv23SD rRNA rrlD NC_002937.3 2692893 2695813 R 23S ribosomal RNA complement(2692893..2695813) Desulfovibrio vulgaris str. Hildenborough 2794988 Dv16SD rRNA rrsD NC_002937.3 2696214 2697754 R 16S ribosomal RNA complement(2696214..2697754) Desulfovibrio vulgaris str. Hildenborough 2794991 Dv5SE rRNA rrfE NC_002937.3 3247063 3247179 R 5S ribosomal RNA complement(3247063..3247179) Desulfovibrio vulgaris str. Hildenborough 2795977 Dv23SE rRNA rrlE NC_002937.3 3247287 3250207 R 23S ribosomal RNA complement(3247287..3250207) Desulfovibrio vulgaris str. Hildenborough 2795978 Dv16SE rRNA rrsE NC_002937.3 3250608 3252148 R 16S ribosomal RNA complement(3250608..3252148) Desulfovibrio vulgaris str. Hildenborough 2796596