-- dump date 20240506_011701 -- class Genbank::Contig -- table contig_comment -- id comment NC_019780.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003944.1.REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. KerfeldREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNLREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: IsraelREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAiiREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v.REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPSREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lakeREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v.REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPSREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 49REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49 Pseudo Genes (ambiguous residues) :: 0 of 49REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49 Pseudo Genes (ambiguous residues) :: 0 of 49 Pseudo Genes (frameshifted) :: 6 of 49REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49 Pseudo Genes (ambiguous residues) :: 0 of 49 Pseudo Genes (frameshifted) :: 6 of 49 Pseudo Genes (incomplete) :: 40 of 49REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49 Pseudo Genes (ambiguous residues) :: 0 of 49 Pseudo Genes (frameshifted) :: 6 of 49 Pseudo Genes (incomplete) :: 40 of 49 Pseudo Genes (internal stop) :: 6 of 49REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49 Pseudo Genes (ambiguous residues) :: 0 of 49 Pseudo Genes (frameshifted) :: 6 of 49 Pseudo Genes (incomplete) :: 40 of 49 Pseudo Genes (internal stop) :: 6 of 49 Pseudo Genes (multiple problems) :: 3 of 49REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49 Pseudo Genes (ambiguous residues) :: 0 of 49 Pseudo Genes (frameshifted) :: 6 of 49 Pseudo Genes (incomplete) :: 40 of 49 Pseudo Genes (internal stop) :: 6 of 49 Pseudo Genes (multiple problems) :: 3 of 49 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49 Pseudo Genes (ambiguous residues) :: 0 of 49 Pseudo Genes (frameshifted) :: 6 of 49 Pseudo Genes (incomplete) :: 40 of 49 Pseudo Genes (internal stop) :: 6 of 49 Pseudo Genes (multiple problems) :: 3 of 49 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003944.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087086 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Dactylococcopsis salina PCC 8305 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Israel environment :: Missing num_replicons :: 1 ref_biomaterial :: PCC 8305 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: Missing sequencing_meth :: 454-GS-FLX, Illumina GAii assembly :: Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS finishing_strategy :: Finished GOLD Stamp ID :: Gi04310 Funding Program :: DOE-GEBA 2009 Gene Calling Method :: GenePrimp, Prodigal 1.4 Isolation Site :: Solar lake Isolation Comments :: isolated in 1979 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3(pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPS Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:19:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,804 CDSs (total) :: 3,749 Genes (coding) :: 3,700 CDSs (with protein) :: 3,700 Genes (RNA) :: 55 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49 Pseudo Genes (ambiguous residues) :: 0 of 49 Pseudo Genes (frameshifted) :: 6 of 49 Pseudo Genes (incomplete) :: 40 of 49 Pseudo Genes (internal stop) :: 6 of 49 Pseudo Genes (multiple problems) :: 3 of 49 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.