-- dump date 20140619_043229 -- class Genbank::CDS -- table cds_note -- id note YP_001693240.1 identified by Glimmer3; putative YP_001693241.1 identified by Glimmer3; putative YP_001693243.1 identified by Glimmer3; putative YP_001693244.1 identified by Glimmer3; putative YP_001693245.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_001693246.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_001693247.1 identified by match to protein family HMM PF00877 YP_001693248.1 identified by Glimmer3; putative YP_001693249.1 identified by Glimmer3; putative YP_001693250.1 identified by Glimmer3; putative YP_001693251.1 identified by Glimmer3; putative YP_001693252.1 identified by match to protein family HMM PF01966 YP_001693253.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397 YP_001693254.1 identified by Glimmer3; putative YP_001693255.1 identified by Glimmer3; putative YP_001693256.1 identified by match to protein family HMM PF06144 YP_001693257.1 identified by Glimmer3; putative YP_001693258.1 identified by Glimmer3; putative YP_001693260.1 identified by Glimmer3; putative YP_001693262.1 identified by Glimmer3; putative YP_001693264.1 identified by Glimmer3; putative YP_001693265.1 identified by Glimmer3; putative YP_001693266.1 identified by Glimmer3; putative YP_001693272.1 identified by match to protein family HMM PF01966 YP_001693275.1 identified by Glimmer3; putative YP_001693276.1 identified by Glimmer3; putative YP_001693278.1 identified by match to protein family HMM PF01807 YP_001693280.1 identified by match to protein family HMM PF01381 YP_001693281.1 identified by Glimmer3; putative YP_001693283.1 identified by Glimmer3; putative YP_001693285.1 identified by Glimmer3; putative YP_001693288.1 identified by Glimmer3; putative YP_001693289.1 identified by Glimmer3; putative YP_001693290.1 identified by Glimmer3; putative YP_001693291.1 identified by Glimmer3; putative YP_001693292.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_001693293.1 identified by Glimmer3; putative YP_001693294.1 identified by Glimmer3; putative YP_001693295.1 identified by Glimmer3; putative YP_001693296.1 identified by Glimmer3; putative YP_001693297.1 identified by Glimmer3; putative YP_001693298.1 identified by Glimmer3; putative YP_001693301.1 identified by match to protein family HMM PF01555 YP_001693303.1 identified by Glimmer3; putative YP_001693304.1 identified by Glimmer3; putative YP_001693305.1 identified by Glimmer3; putative YP_001693306.1 identified by Glimmer3; putative YP_001693307.1 identified by similarity to SP:P10844; match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953 YP_001693308.1 identified by similarity to GB:CAA55074.1; match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470 YP_001693309.1 identified by match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR03209 YP_001693310.1 identified by match to protein family HMM PF00652 YP_001693311.1 identified by match to protein family HMM PF05588 YP_001693312.1 identified by match to protein family HMM PF03505 YP_001693313.1 identified by Glimmer3; putative YP_001693315.1 identified by Glimmer3; putative YP_001693316.1 identified by Glimmer3; putative YP_001693317.1 rnap alphasubunit; transcriptase alpha chain; rna polymerase subunit alpha; identified by match to protein family HMM PF03118 YP_001693318.1 identified by match to protein family HMM TIGR02844 YP_001693319.1 identified by Glimmer3; putative YP_001693322.1 identified by Glimmer3; putative YP_001693323.1 identified by Glimmer3; putative YP_001693325.1 identified by match to protein family HMM PF06539 YP_001693326.1 identified by match to protein family HMM PF04012 YP_001693327.1 identified by Glimmer3; putative YP_001693328.1 identified by Glimmer3; putative YP_001693329.1 identified by Glimmer3; putative YP_001693330.1 identified by Glimmer3; putative YP_001693331.1 identified by Glimmer3; putative YP_001693332.1 identified by Glimmer3; putative YP_001693333.1 identified by match to protein family HMM PF00149 YP_001693334.1 identified by Glimmer3; putative YP_001693335.1 identified by Glimmer3; putative YP_001693336.1 identified by Glimmer3; putative YP_001693337.1 identified by Glimmer3; putative YP_001693338.1 identified by Glimmer3; putative YP_001693340.1 identified by Glimmer3; putative YP_001693342.1 identified by Glimmer3; putative YP_001693343.1 identified by Glimmer3; putative YP_001693345.1 identified by Glimmer3; putative YP_001693346.1 identified by Glimmer3; putative YP_001693347.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550 YP_001693348.1 identified by Glimmer3; putative YP_001693350.1 identified by Glimmer3; putative YP_001693351.1 identified by Glimmer3; putative YP_001693352.1 identified by Glimmer3; putative YP_001693355.1 identified by Glimmer3; putative YP_001693357.1 identified by Glimmer3; putative YP_001693358.1 identified by Glimmer3; putative YP_001693359.1 identified by Glimmer3; putative YP_001693360.1 identified by Glimmer3; putative YP_001693361.1 identified by Glimmer3; putative YP_001693362.1 identified by Glimmer3; putative YP_001693364.1 identified by Glimmer3; putative YP_001693365.1 identified by Glimmer3; putative YP_001693366.1 identified by Glimmer3; putative YP_001693367.1 identified by Glimmer3; putative YP_001693368.1 identified by match to protein family HMM PF00580 YP_001693370.1 identified by match to protein family HMM PF00565 YP_001693371.1 identified by Glimmer3; putative YP_001693372.1 identified by Glimmer3; putative YP_001693373.1 identified by Glimmer3; putative YP_001693374.1 identified by Glimmer3; putative YP_001693375.1 identified by Glimmer3; putative YP_001693376.1 identified by Glimmer3; putative YP_001693377.1 identified by Glimmer3; putative YP_001693378.1 identified by Glimmer3; putative YP_001693379.1 identified by Glimmer3; putative YP_001693381.1 identified by Glimmer3; putative YP_001693382.1 identified by Glimmer3; putative YP_001693383.1 identified by Glimmer3; putative YP_001693384.1 identified by Glimmer3; putative YP_001693386.1 identified by Glimmer3; putative YP_001693387.1 identified by Glimmer3; putative YP_001693388.1 identified by Glimmer3; putative YP_001693389.1 identified by Glimmer3; putative YP_001693391.1 identified by Glimmer3; putative YP_001693393.1 identified by Glimmer3; putative YP_001693394.1 identified by Glimmer3; putative YP_001693395.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_001693396.1 identified by Glimmer3; putative YP_001693397.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_001693398.1 identified by match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 YP_001693399.1 identified by Glimmer3; putative YP_001693401.1 identified by match to protein family HMM PF01841 YP_001693404.1 identified by Glimmer3; putative YP_001693406.1 identified by Glimmer3; putative YP_001693407.1 identified by Glimmer3; putative YP_001693408.1 identified by Glimmer3; putative YP_001693409.1 identified by Glimmer3; putative YP_001693411.1 identified by Glimmer3; putative YP_001693412.1 identified by Glimmer3; putative YP_001693413.1 identified by Glimmer3; putative YP_001693414.1 identified by Glimmer3; putative YP_001693415.1 identified by Glimmer3; putative YP_001693416.1 identified by Glimmer3; putative YP_001693417.1 identified by Glimmer3; putative YP_001693418.1 identified by Glimmer3; putative YP_001693419.1 identified by Glimmer3; putative YP_001693421.1 identified by Glimmer3; putative YP_001693422.1 identified by match to protein family HMM PF01507 YP_001693423.1 identified by match to protein family HMM PF04024 YP_001693426.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_001693427.1 identified by Glimmer3; putative YP_001693428.1 identified by match to protein family HMM PF01145 YP_001693429.1 identified by Glimmer3; putative YP_001693430.1 identified by Glimmer3; putative YP_001693431.1 identified by match to protein family HMM TIGR01877 YP_001693432.1 identified by Glimmer3; putative YP_001693434.1 identified by match to protein family HMM TIGR02592; match to protein family HMM TIGR02593 YP_001779627.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001779628.1 binds the polymerase to DNA and acts as a sliding clamp YP_001779629.1 identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988 YP_001779630.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_001779632.1 negatively supercoils closed circular double-stranded DNA YP_001779633.1 negatively supercoils closed circular double-stranded DNA YP_001779634.1 identified by Glimmer3 YP_001779636.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279 YP_001779637.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04015 YP_001779638.1 identified by match to protein family HMM PF03699 YP_001779639.1 identified by match to protein family HMM PF03734 YP_001779640.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_001779641.1 identified by match to protein family HMM PF07892 YP_001779642.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001779643.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001779644.1 identified by match to protein family HMM PF00005 YP_001779648.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001779649.1 identified by match to protein family HMM PF03109 YP_001779651.1 identified by match to protein family HMM PF00158 YP_001779652.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_001779653.1 identified by match to protein family HMM PF00383 YP_001779654.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_001779655.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_001779656.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001779658.1 identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862 YP_001779659.1 Regulatory factor involved in maltose metabolism YP_001779660.1 identified by match to protein family HMM PF00293 YP_001779662.1 identified by match to protein family HMM PF00037 YP_001779664.1 identified by match to protein family HMM PF00899 YP_001779665.1 identified by match to protein family HMM PF07690 YP_001779666.1 identified by match to protein family HMM PF00583 YP_001779667.1 identified by match to protein family HMM PF03167 YP_001779668.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001779670.1 identified by Glimmer3 YP_001779671.1 identified by Glimmer3 YP_001779673.1 identified by Glimmer3 YP_001779674.1 identified by match to protein family HMM PF00639 YP_001779675.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_001779676.1 identified by match to protein family HMM PF02016 YP_001779677.1 identified by match to protein family HMM PF01544 YP_001779681.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_001779682.1 identified by match to protein family HMM PF02223 YP_001779683.1 identified by match to protein family HMM PF06153 YP_001779684.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_001779685.1 identified by match to protein family HMM PF04468 YP_001779687.1 identified by match to protein family HMM PF00037 YP_001779689.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_001779690.1 identified by match to protein family HMM PF00877 YP_001779691.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_001779692.1 identified by match to protein family HMM PF08876 YP_001779693.1 identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078 YP_001779694.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001779695.1 identified by match to protein family HMM PF01522 YP_001779697.1 identified by match to protein family HMM PF07670 YP_001779698.1 identified by match to protein family HMM PF07670 YP_001779699.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001779700.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_001779701.1 identified by match to protein family HMM PF01047 YP_001779702.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001779703.1 identified by match to protein family HMM PF04286 YP_001779704.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_001779705.1 identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501 YP_001779706.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_001779707.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001779711.1 identified by match to protein family HMM TIGR01730 YP_001779712.1 identified by match to protein family HMM PF00005 YP_001779713.1 identified by match to protein family HMM PF02687 YP_001779715.1 identified by match to protein family HMM PF00037 YP_001779716.1 identified by Glimmer3 YP_001779717.1 identified by Glimmer3 YP_001779718.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001779719.1 identified by match to protein family HMM PF02308 YP_001779720.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001779721.1 identified by match to protein family HMM TIGR02491 YP_001779722.1 identified by Glimmer3 YP_001779724.1 identified by match to protein family HMM PF03551 YP_001779726.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_001779727.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001779729.1 identified by match to protein family HMM PF00483 YP_001779730.1 identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299 YP_001779731.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268 YP_001779733.1 identified by match to protein family HMM PF04055 YP_001779734.1 identified by match to protein family HMM PF01547 YP_001779735.1 identified by match to protein family HMM PF00534 YP_001779736.1 identified by match to protein family HMM TIGR02906 YP_001779737.1 identified by Glimmer3 YP_001779739.1 identified by match to protein family HMM TIGR02906 YP_001779740.1 identified by match to protein family HMM PF00534 YP_001779741.1 identified by match to protein family HMM TIGR02906 YP_001779742.1 identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855 YP_001779743.1 identified by match to protein family HMM PF06257 YP_001779744.1 identified by match to protein family HMM PF01476 YP_001779745.1 identified by Glimmer3 YP_001779746.1 identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069 YP_001779747.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_001779748.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001779749.1 identified by Glimmer3 YP_001779750.1 identified by match to protein family HMM PF03323 YP_001779751.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001779752.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_001779753.1 identified by match to protein family HMM TIGR02837 YP_001779754.1 identified by match to protein family HMM PF04101; match to protein family HMM PF06925 YP_001779755.1 identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889 YP_001779756.1 identified by match to protein family HMM PF02568 YP_001779757.1 identified by match to protein family HMM PF09148 YP_001779759.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001779761.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001779762.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105 YP_001779763.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_001779764.1 identified by match to protein family HMM PF07136 YP_001779765.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387 YP_001779766.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001779768.1 identified by match to protein family HMM PF02535 YP_001779769.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_001779770.1 identified by match to protein family HMM PF01451 YP_001779771.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_001779772.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001779774.1 identified by match to protein family HMM PF00383 YP_001779775.1 identified by match to protein family HMM PF00953 YP_001779776.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_001779778.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001779779.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_001779780.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel YP_001779781.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001779782.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001779783.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001779784.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001779785.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_001779787.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001779788.1 identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870 YP_001779789.1 identified by match to protein family HMM PF01551 YP_001779790.1 identified by match to protein family HMM TIGR02844 YP_001779791.1 identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_001779792.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_001779793.1 identified by match to protein family HMM PF01171 YP_001779794.1 identified by Glimmer3 YP_001779795.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001779796.1 identified by match to protein family HMM TIGR01448 YP_001779798.1 identified by match to protein family HMM PF00156 YP_001779799.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_001779800.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001779801.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA YP_001779802.1 identified by match to protein family HMM PF04389 YP_001779803.1 identified by match to protein family HMM PF00575 YP_001779807.1 identified by match to protein family HMM PF00149 YP_001779808.1 identified by match to protein family HMM PF01022 YP_001779809.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF01206; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_001779811.1 identified by match to protein family HMM PF04607 YP_001779812.1 identified by Glimmer3 YP_001779813.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001779814.1 identified by match to protein family HMM PF00581 YP_001779816.1 identified by match to protein family HMM PF00226; match to protein family HMM PF07719 YP_001779818.1 identified by match to protein family HMM PF01928 YP_001779820.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859 YP_001779822.1 identified by match to protein family HMM PF04239 YP_001779823.1 identified by match to protein family HMM PF00485 YP_001779825.1 identified by Glimmer3 YP_001779827.1 identified by Glimmer3 YP_001779828.1 identified by Glimmer3 YP_001779829.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_001779830.1 identified by match to protein family HMM PF00571 YP_001779831.1 similar to YegS from E. coli YP_001779833.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497 YP_001779834.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239 YP_001779835.1 identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869 YP_001779836.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_001779837.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_001779838.1 identified by match to protein family HMM PF08331 YP_001779839.1 identified by match to protein family HMM PF01553 YP_001779840.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_001779841.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_001779842.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_001779844.1 identified by match to protein family HMM PF05343 YP_001779845.1 identified by match to protein family HMM PF04294 YP_001779846.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501 YP_001779847.1 identified by match to protein family HMM PF04055 YP_001779848.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_001779849.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001779850.1 identified by match to protein family HMM PF02608 YP_001779851.1 identified by match to protein family HMM PF00005 YP_001779852.1 identified by match to protein family HMM PF02653 YP_001779853.1 identified by match to protein family HMM PF02653 YP_001779854.1 identified by match to protein family HMM PF01522 YP_001779855.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001779856.1 identified by match to protein family HMM PF04198 YP_001779857.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_001779858.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001779859.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001779860.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001779861.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001779862.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_001779863.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_001779864.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001779865.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001779866.1 identified by match to protein family HMM PF00375 YP_001779867.1 identified by match to protein family HMM PF08877 YP_001779868.1 identified by Glimmer3 YP_001779869.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031 YP_001779870.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001779871.1 identified by match to protein family HMM PF00027 YP_001779873.1 identified by match to protein family HMM PF00724 YP_001779874.1 identified by match to protein family HMM PF00282 YP_001779875.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001779876.1 identified by match to protein family HMM PF01569 YP_001779877.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001779878.1 identified by match to protein family HMM PF00005 YP_001779880.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001779881.1 identified by match to protein family HMM PF07883 YP_001779882.1 identified by Glimmer3 YP_001779884.1 identified by match to protein family HMM PF01844; match to protein family HMM PF03235 YP_001779885.1 identified by Glimmer3 YP_001779886.1 identified by Glimmer3 YP_001779888.1 identified by match to protein family HMM PF00390; match to protein family HMM PF01262; match to protein family HMM PF03949 YP_001779889.1 transports degraded pectin products into the bacterial cell YP_001779890.1 identified by match to protein family HMM PF02518 YP_001779891.1 identified by match to protein family HMM PF00072 YP_001779892.1 identified by match to protein family HMM PF00324 YP_001779893.1 identified by match to protein family HMM PF00753 YP_001779894.1 identified by match to protein family HMM PF00132 YP_001779895.1 identified by match to protein family HMM PF00583 YP_001779896.1 identified by match to protein family HMM PF00383 YP_001779897.1 identified by match to protein family HMM PF00583 YP_001779898.1 identified by match to protein family HMM PF01872 YP_001779899.1 3'-5' exonuclease of DNA polymerase III YP_001779900.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001779901.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001779902.1 identified by match to protein family HMM PF00005 YP_001779905.1 identified by match to protein family HMM PF00857 YP_001779906.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_001779907.1 identified by match to protein family HMM PF00941 YP_001779908.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001779909.1 identified by Glimmer3 YP_001779910.1 identified by match to protein family HMM PF02683 YP_001779911.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_001779912.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001779913.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001779914.1 identified by match to protein family HMM PF00440 YP_001779915.1 identified by match to protein family HMM PF00144 YP_001779916.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001779917.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001779918.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031 YP_001779919.1 identified by match to protein family HMM PF02056 YP_001779920.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_001779921.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001779922.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001779923.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_001779924.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001779925.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001779926.1 identified by match to protein family HMM PF00005 YP_001779927.1 identified by match to protein family HMM PF02687 YP_001779928.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001779929.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_001779930.1 identified by Glimmer3 YP_001779931.1 identified by match to protein family HMM PF02056 YP_001779932.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_001779933.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001779935.1 identified by match to protein family HMM PF00313 YP_001779936.1 identified by match to protein family HMM PF06210 YP_001779937.1 identified by Glimmer3 YP_001779938.1 identified by match to protein family HMM PF02082 YP_001779939.1 identified by match to protein family HMM PF01323 YP_001779940.1 identified by match to protein family HMM PF01370 YP_001779941.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001779942.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_001779943.1 identified by match to protein family HMM PF02056 YP_001779944.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_001779945.1 identified by match to protein family HMM PF00920 YP_001779946.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_001779947.1 identified by match to protein family HMM PF00294 YP_001779948.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178 YP_001779949.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001779950.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001779951.1 identified by match to protein family HMM PF00535 YP_001779952.1 identified by match to protein family HMM PF04138 YP_001779953.1 identified by match to protein family HMM PF02366 YP_001779954.1 identified by match to protein family HMM PF00165 YP_001779955.1 identified by match to protein family HMM PF01497 YP_001779956.1 identified by match to protein family HMM PF01032 YP_001779957.1 identified by match to protein family HMM PF00005 YP_001779958.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001779959.1 identified by match to protein family HMM PF00165 YP_001779960.1 identified by match to protein family HMM PF01497 YP_001779961.1 identified by match to protein family HMM PF01497 YP_001779962.1 identified by match to protein family HMM PF01032 YP_001779963.1 identified by match to protein family HMM PF01032 YP_001779964.1 identified by match to protein family HMM PF00005 YP_001779965.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001779967.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_001779968.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_001779969.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001779970.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001779971.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001779972.1 identified by match to protein family HMM PF00005 YP_001779973.1 identified by match to protein family HMM PF02687 YP_001779974.1 identified by Glimmer3 YP_001779975.1 identified by match to protein family HMM PF01934 YP_001779976.1 identified by match to protein family HMM PF03788 YP_001779977.1 identified by match to protein family HMM PF04172 YP_001779979.1 identified by match to protein family HMM PF04055 YP_001779980.1 identified by match to protein family HMM PF08903 YP_001779983.1 identified by match to protein family HMM PF04647 YP_001779985.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254 YP_001779986.1 identified by match to protein family HMM PF00583 YP_001779988.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001779990.1 identified by match to protein family HMM PF04647 YP_001779991.1 identified by Glimmer3 YP_001779992.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001779993.1 identified by match to protein family HMM PF01171 YP_001779994.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001779995.1 identified by match to protein family HMM PF00324 YP_001779996.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001779997.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465 YP_001780000.1 identified by Glimmer3 YP_001780003.1 identified by match to protein family HMM PF01569 YP_001780004.1 identified by match to protein family HMM PF01522 YP_001780005.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001780006.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001780008.1 identified by match to protein family HMM PF06962 YP_001780009.1 identified by match to protein family HMM PF09335 YP_001780010.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF05228; match to protein family HMM TIGR00254 YP_001780012.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001780013.1 identified by match to protein family HMM PF01966 YP_001780014.1 identified by match to protein family HMM PF00999 YP_001780015.1 identified by match to protein family HMM PF00266 YP_001780016.1 identified by match to protein family HMM PF03601 YP_001780018.1 identified by match to protein family HMM PF00486 YP_001780019.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001780020.1 identified by match to protein family HMM PF00474 YP_001780021.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945 YP_001780022.1 identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946 YP_001780023.1 identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947 YP_001780024.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_001780025.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943 YP_001780026.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate YP_001780027.1 identified by match to protein family HMM PF04122 YP_001780028.1 identified by match to protein family HMM PF07456 YP_001780029.1 identified by match to protein family HMM PF07009 YP_001780030.1 identified by match to protein family HMM PF02424 YP_001780031.1 identified by match to protein family HMM PF04122 YP_001780032.1 identified by match to protein family HMM PF04122; match to protein family HMM PF04151 YP_001780033.1 identified by Glimmer3 YP_001780034.1 identified by match to protein family HMM PF04122; match to protein family HMM PF07554 YP_001780035.1 identified by Glimmer3 YP_001780036.1 identified by match to protein family HMM PF04122 YP_001780039.1 identified by match to protein family HMM PF01547 YP_001780041.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_001780042.1 identified by match to protein family HMM PF00005 YP_001780044.1 identified by match to protein family HMM PF00324 YP_001780045.1 identified by match to protein family HMM TIGR02898 YP_001780047.1 identified by match to protein family HMM PF01863 YP_001780048.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_001780050.1 identified by match to protein family HMM PF01475 YP_001780052.1 identified by match to protein family HMM PF01966 YP_001780053.1 identified by match to protein family HMM PF01694 YP_001780054.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001780055.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_001780056.1 identified by match to protein family HMM PF06803 YP_001780057.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_001780058.1 identified by Glimmer3 YP_001780059.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01381 YP_001780060.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001780061.1 identified by match to protein family HMM PF01965 YP_001780063.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 YP_001780064.1 identified by match to protein family HMM PF07685 YP_001780065.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_001780066.1 identified by match to protein family HMM PF01238 YP_001780068.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001780069.1 identified by match to protein family HMM PF00753 YP_001780070.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_001780071.1 identified by match to protein family HMM PF00682 YP_001780072.1 Catalyzes the conversion of citrate to isocitrate YP_001780073.1 identified by match to protein family HMM PF00180 YP_001780074.1 identified by match to protein family HMM PF00005 YP_001780075.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03606 YP_001780076.1 identified by match to protein family HMM PF04070 YP_001780077.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001780078.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001780079.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001780080.1 identified by match to protein family HMM TIGR02773 YP_001780081.1 identified by Glimmer3 YP_001780082.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001780084.1 identified by match to protein family HMM PF00440 YP_001780085.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_001780089.1 identified by Glimmer3 YP_001780091.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_001780092.1 identified by match to protein family HMM PF00015 YP_001780093.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_001780094.1 identified by match to protein family HMM PF01734 YP_001780095.1 identified by match to protein family HMM PF00753 YP_001780096.1 identified by match to protein family HMM PF00903 YP_001780097.1 identified by Glimmer3 YP_001780099.1 identified by match to protein family HMM PF01381 YP_001780100.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001780101.1 identified by match to protein family HMM PF00497 YP_001780102.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001780103.1 identified by match to protein family HMM PF00563; match to protein family HMM PF08668 YP_001780104.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_001780105.1 identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694 YP_001780106.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_001780107.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001780108.1 identified by match to protein family HMM PF01094 YP_001780109.1 identified by match to protein family HMM PF02653 YP_001780110.1 identified by match to protein family HMM PF02653 YP_001780111.1 identified by match to protein family HMM PF00005 YP_001780112.1 identified by match to protein family HMM PF00005 YP_001780113.1 identified by match to protein family HMM PF02596 YP_001780114.1 identified by match to protein family HMM PF06738 YP_001780116.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001780117.1 identified by match to protein family HMM PF04011 YP_001780118.1 identified by match to protein family HMM PF04536 YP_001780119.1 identified by match to protein family HMM PF00293 YP_001780120.1 identified by Glimmer3 YP_001780122.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001780125.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619 YP_001780126.1 identified by match to protein family HMM PF02463 YP_001780127.1 identified by match to protein family HMM PF00293 YP_001780128.1 identified by match to protein family HMM PF02588 YP_001780129.1 identified by match to protein family HMM PF01022 YP_001780130.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_001780131.1 identified by match to protein family HMM PF02562 YP_001780134.1 identified by Glimmer3 YP_001780137.1 identified by match to protein family HMM PF02624 YP_001780138.1 identified by match to protein family HMM PF02517 YP_001780140.1 identified by match to protein family HMM PF00005 YP_001780141.1 identified by match to protein family HMM PF01061 YP_001780142.1 identified by match to protein family HMM PF01061 YP_001780143.1 identified by match to protein family HMM PF02163 YP_001780144.1 identified by Glimmer3 YP_001780145.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600 YP_001780147.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001780149.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_001780150.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001780151.1 identified by match to protein family HMM PF00072 YP_001780152.1 identified by match to protein family HMM PF00877; match to protein family HMM PF05257; match to protein family HMM PF06347; match to protein family HMM PF08239 YP_001780153.1 identified by match to protein family HMM PF00561 YP_001780154.1 identified by match to protein family HMM PF00072 YP_001780155.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001780156.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001780157.1 identified by match to protein family HMM PF00072 YP_001780158.1 identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 YP_001780159.1 identified by match to protein family HMM PF06733 YP_001780161.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080; match to protein family HMM PF08279 YP_001780162.1 identified by match to protein family HMM PF01262 YP_001780163.1 identified by match to protein family HMM PF06874 YP_001780164.1 identified by Glimmer3 YP_001780165.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_001780166.1 identified by Glimmer3 YP_001780167.1 identified by Glimmer3 YP_001780168.1 identified by match to protein family HMM PF02777 YP_001780169.1 identified by match to protein family HMM PF00753 YP_001780172.1 identified by Glimmer3 YP_001780173.1 identified by match to protein family HMM PF01037 YP_001780175.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_001780176.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_001780177.1 identified by match to protein family HMM PF00132 YP_001780178.1 identified by match to protein family HMM PF00753 YP_001780179.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517 YP_001780180.1 identified by match to protein family HMM PF02417 YP_001780181.1 identified by match to protein family HMM PF02417 YP_001780182.1 identified by match to protein family HMM PF02452 YP_001780183.1 identified by match to protein family HMM PF03885 YP_001780184.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001780185.1 identified by match to protein family HMM PF01957 YP_001780186.1 identified by match to protein family HMM PF01145 YP_001780188.1 identified by match to protein family HMM PF02517 YP_001780189.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_001780191.1 identified by match to protein family HMM PF00583 YP_001780192.1 identified by match to protein family HMM PF00583 YP_001780193.1 identified by match to protein family HMM PF04324 YP_001780195.1 identified by Glimmer3 YP_001780196.1 identified by match to protein family HMM PF02554 YP_001780198.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001780199.1 identified by match to protein family HMM PF00005 YP_001780200.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_001780201.1 identified by match to protein family HMM TIGR02357 YP_001780202.1 identified by Glimmer3 YP_001780203.1 identified by match to protein family HMM PF02810 YP_001780204.1 identified by match to protein family HMM PF00392 YP_001780205.1 identified by match to protein family HMM PF00005 YP_001780207.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187 YP_001780208.1 identified by match to protein family HMM PF00528 YP_001780209.1 identified by match to protein family HMM PF00528; match to protein family HMM PF01547 YP_001780210.1 identified by match to protein family HMM PF00165 YP_001780211.1 identified by match to protein family HMM PF00375 YP_001780212.1 identified by match to protein family HMM PF07883 YP_001780213.1 identified by match to protein family HMM PF00805 YP_001780214.1 identified by Glimmer3 YP_001780215.1 identified by match to protein family HMM PF01381 YP_001780216.1 identified by Glimmer3 YP_001780217.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001780218.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_001780219.1 identified by Glimmer3 YP_001780220.1 identified by Glimmer3 YP_001780221.1 identified by Glimmer3 YP_001780222.1 identified by match to protein family HMM PF04055 YP_001780223.1 identified by Glimmer3 YP_001780225.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463 YP_001780227.1 identified by match to protein family HMM PF00583 YP_001780228.1 identified by match to protein family HMM PF02687 YP_001780229.1 identified by match to protein family HMM PF00005 YP_001780231.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001780233.1 identified by match to protein family HMM PF00884 YP_001780234.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001780235.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_001780236.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001780237.1 identified by match to protein family HMM PF03551 YP_001780239.1 identified by match to protein family HMM PF04397 YP_001780241.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001780242.1 identified by match to protein family HMM PF02517 YP_001780243.1 identified by match to protein family HMM PF01381 YP_001780246.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001780247.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001780248.1 identified by match to protein family HMM PF02557 YP_001780249.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001780250.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001780252.1 identified by match to protein family HMM PF00072 YP_001780253.1 identified by match to protein family HMM PF02518 YP_001780254.1 identified by match to protein family HMM PF01098 YP_001780255.1 identified by Glimmer3 YP_001780256.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001780257.1 identified by Glimmer3 YP_001780258.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001780259.1 identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222 YP_001780260.1 identified by match to protein family HMM PF00165 YP_001780261.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001780262.1 identified by match to protein family HMM TIGR00277 YP_001780263.1 identified by match to protein family HMM PF04397 YP_001780264.1 identified by match to protein family HMM PF00005 YP_001780266.1 identified by Glimmer3 YP_001780267.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001780268.1 identified by match to protein family HMM PF00488 YP_001780269.1 identified by Glimmer3 YP_001780270.1 identified by match to protein family HMM PF01243 YP_001780271.1 identified by match to protein family HMM PF04304 YP_001780273.1 6-o-methylguanine-dna methyltransferase; mgmt; o-6-methylguanine-dna-alkyltransferase; identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_001780274.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02805 YP_001780275.1 identified by match to protein family HMM PF00730 YP_001780276.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001780277.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001780278.1 identified by match to protein family HMM PF02915 YP_001780279.1 identified by match to protein family HMM PF01047 YP_001780280.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001780281.1 identified by Glimmer3 YP_001780282.1 identified by match to protein family HMM PF00005 YP_001780283.1 identified by match to protein family HMM PF01061 YP_001780286.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001780287.1 identified by match to protein family HMM PF08011 YP_001780288.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_001780289.1 identified by match to protein family HMM PF00293 YP_001780292.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001780293.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_001780294.1 identified by match to protein family HMM PF02811 YP_001780295.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001780296.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_001780297.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04405 YP_001780298.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282 YP_001780299.1 identified by match to protein family HMM PF03352 YP_001780300.1 identified by Glimmer3 YP_001780303.1 identified by match to protein family HMM PF00753 YP_001780305.1 identified by match to protein family HMM PF02653 YP_001780306.1 identified by match to protein family HMM PF00005 YP_001780307.1 identified by match to protein family HMM PF04392 YP_001780308.1 identified by match to protein family HMM PF03965 YP_001780309.1 identified by match to protein family HMM PF05569 YP_001780311.1 identified by match to protein family HMM PF01207 YP_001780312.1 identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 YP_001780314.1 identified by match to protein family HMM PF00165 YP_001780315.1 identified by match to protein family HMM PF01497 YP_001780316.1 identified by match to protein family HMM PF01032 YP_001780317.1 identified by match to protein family HMM PF01032 YP_001780318.1 identified by match to protein family HMM PF00005 YP_001780319.1 identified by match to protein family HMM PF00142 YP_001780320.1 identified by Glimmer3 YP_001780321.1 identified by Glimmer3 YP_001780322.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001780325.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001780326.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001780327.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_001780328.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_001780329.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_001780330.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_001780332.1 identified by Glimmer3 YP_001780334.1 identified by match to protein family HMM PF00440 YP_001780336.1 identified by Glimmer3 YP_001780337.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001780338.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001780339.1 identified by match to protein family HMM PF00005 YP_001780340.1 identified by match to protein family HMM PF02687 YP_001780341.1 identified by match to protein family HMM PF01047 YP_001780342.1 identified by match to protein family HMM PF03358 YP_001780343.1 identified by Glimmer3 YP_001780344.1 identified by Glimmer3 YP_001780345.1 identified by Glimmer3 YP_001780346.1 identified by match to protein family HMM PF00376 YP_001780347.1 identified by match to protein family HMM PF07282 YP_001780349.1 identified by Glimmer3 YP_001780350.1 similar to streptococcal 67 kDa myosin-cross-reactive antigen family protein; in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_001780353.1 identified by match to protein family HMM PF00005 YP_001780354.1 identified by match to protein family HMM PF01061 YP_001780355.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_001780356.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001780357.1 identified by match to protein family HMM PF00165 YP_001780358.1 identified by match to protein family HMM PF04994 YP_001780359.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_001780360.1 identified by match to protein family HMM PF00015 YP_001780362.1 identified by match to protein family HMM PF00005 YP_001780363.1 identified by Glimmer3 YP_001780364.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001780365.1 identified by match to protein family HMM PF01965 YP_001780366.1 identified by match to protein family HMM PF00291 YP_001780367.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_001780368.1 identified by match to protein family HMM PF01053; match to protein family HMM PF01212 YP_001780369.1 identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001780370.1 identified by match to protein family HMM PF00704 YP_001780371.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001780373.1 identified by match to protein family HMM PF00302 YP_001780374.1 identified by match to protein family HMM PF00403 YP_001780376.1 identified by match to protein family HMM PF06172 YP_001780377.1 identified by Glimmer3 YP_001780378.1 identified by match to protein family HMM PF01381 YP_001780379.1 identified by match to protein family HMM PF01381 YP_001780380.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_001780382.1 identified by match to protein family HMM TIGR02436 YP_001780384.1 identified by Glimmer3 YP_001780385.1 identified by Glimmer3 YP_001780388.1 identified by match to protein family HMM PF01476; match to protein family HMM PF07485 YP_001780389.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_001780393.1 identified by Glimmer3 YP_001780394.1 identified by Glimmer3 YP_001780395.1 identified by Glimmer3 YP_001780397.1 identified by match to protein family HMM PF01022 YP_001780398.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001780399.1 identified by match to protein family HMM PF00005 YP_001780402.1 identified by match to protein family HMM PF00303 YP_001780403.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001780405.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_001780407.1 identified by match to protein family HMM PF06695 YP_001780408.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001780409.1 identified by Glimmer3 YP_001780412.1 identified by match to protein family HMM PF00005 YP_001780413.1 identified by match to protein family HMM PF02687 YP_001780414.1 identified by Glimmer3 YP_001780415.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001780416.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001780417.1 identified by match to protein family HMM PF06555 YP_001780418.1 identified by match to protein family HMM TIGR02861 YP_001780421.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_001780422.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001780423.1 identified by match to protein family HMM PF01155 YP_001780424.1 identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 YP_001780425.1 identified by match to protein family HMM PF00581 YP_001780426.1 identified by match to protein family HMM PF00583 YP_001780427.1 identified by match to protein family HMM PF00144 YP_001780428.1 identified by match to protein family HMM PF01381 YP_001780431.1 identified by Glimmer3 YP_001780432.1 identified by Glimmer3 YP_001780433.1 identified by match to protein family HMM PF01979 YP_001780434.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001780435.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001780436.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00496 YP_001780437.1 identified by match to protein family HMM PF04023 YP_001780438.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_001780439.1 identified by match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670 YP_001780440.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162 YP_001780441.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501 YP_001780442.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_001780446.1 identified by match to protein family HMM PF07875 YP_001780448.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367 YP_001780449.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_001780451.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_001780452.1 identified by match to protein family HMM PF00011 YP_001780453.1 identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001780454.1 identified by match to protein family HMM PF01041 YP_001780455.1 identified by match to protein family HMM PF01041 YP_001780457.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954 YP_001780458.1 identified by Glimmer3 YP_001780459.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_001780461.1 identified by match to protein family HMM PF01243 YP_001780462.1 identified by Glimmer3 YP_001780464.1 identified by match to protein family HMM PF01037; match to protein family HMM PF01047 YP_001780467.1 identified by match to protein family HMM PF00005 YP_001780468.1 identified by match to protein family HMM PF01381 YP_001780469.1 identified by Glimmer3 YP_001780470.1 identified by match to protein family HMM PF00561 YP_001780471.1 identified by Glimmer3 YP_001780472.1 identified by match to protein family HMM PF00583 YP_001780473.1 identified by match to protein family HMM PF00805 YP_001780474.1 identified by match to protein family HMM PF02525 YP_001780475.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_001780476.1 identified by match to protein family HMM PF01022 YP_001780477.1 identified by match to protein family HMM PF00376 YP_001780478.1 identified by match to protein family HMM PF00583 YP_001780479.1 identified by Glimmer3 YP_001780480.1 identified by match to protein family HMM PF04229 YP_001780481.1 identified by match to protein family HMM PF00583 YP_001780482.1 identified by match to protein family HMM PF02678 YP_001780483.1 identified by match to protein family HMM PF01638 YP_001780484.1 identified by match to protein family HMM PF00881 YP_001780486.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883; match to protein family HMM TIGR03404 YP_001780487.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_001780488.1 identified by match to protein family HMM PF04657 YP_001780489.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001780490.1 identified by match to protein family HMM PF00583 YP_001780491.1 identified by Glimmer3 YP_001780494.1 identified by match to protein family HMM PF00027 YP_001780497.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001780500.1 identified by match to protein family HMM PF01327 YP_001780501.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001780502.1 identified by match to protein family HMM PF00881 YP_001780503.1 identified by match to protein family HMM PF00037 YP_001780504.1 identified by Glimmer3 YP_001780506.1 identified by match to protein family HMM PF00165 YP_001780507.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001780508.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_001780509.1 identified by match to protein family HMM PF00232 YP_001780510.1 identified by Glimmer3 YP_001780511.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445 YP_001780512.1 identified by match to protein family HMM PF01381 YP_001780513.1 identified by match to protein family HMM PF08241 YP_001780514.1 identified by match to protein family HMM PF00440 YP_001780515.1 identified by match to protein family HMM PF04055 YP_001780516.1 identified by Glimmer3 YP_001780517.1 identified by match to protein family HMM PF00376 YP_001780518.1 identified by match to protein family HMM PF00936 YP_001780520.1 identified by match to protein family HMM PF06445 YP_001780524.1 identified by match to protein family HMM PF04371 YP_001780525.1 identified by match to protein family HMM PF00892; match to protein family HMM PF06800 YP_001780526.1 identified by match to protein family HMM PF04229 YP_001780527.1 identified by match to protein family HMM PF03734 YP_001780528.1 identified by Glimmer3 YP_001780529.1 identified by Glimmer3 YP_001780533.1 identified by Glimmer3 YP_001780534.1 identified by Glimmer3 YP_001780536.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687 YP_001780537.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001780538.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001780539.1 identified by match to protein family HMM PF02632 YP_001780540.1 identified by Glimmer3 YP_001780541.1 identified by match to protein family HMM PF00583 YP_001780542.1 identified by match to protein family HMM PF00717 YP_001780543.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP YP_001780544.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739 YP_001780545.1 identified by Glimmer3 YP_001780546.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001780547.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_001780548.1 identified by match to protein family HMM PF00155 YP_001780549.1 catalyzes the ATP-dependent transport of cobalt YP_001780550.1 identified by match to protein family HMM PF02553 YP_001780552.1 catalyzes the formation of siroheme from precorrin-2 YP_001780553.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001780554.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469 YP_001780556.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001780557.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_001780558.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid YP_001780559.1 identified by match to protein family HMM PF02517 YP_001780564.1 identified by match to protein family HMM PF00583 YP_001780565.1 identified by match to protein family HMM PF00881 YP_001780566.1 identified by match to protein family HMM PF04229 YP_001780567.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_001780568.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467 YP_001780570.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR02469 YP_001780573.1 identified by Glimmer3 YP_001780576.1 identified by match to protein family HMM PF00583 YP_001780577.1 identified by Glimmer3 YP_001780578.1 catalyzes the formation of precorrin-3A from precorrin-2 YP_001780579.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_001780580.1 identified by match to protein family HMM PF01890 YP_001780581.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_001780582.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_001780584.1 identified by match to protein family HMM PF01903; match to protein family HMM PF06180 YP_001780585.1 identified by match to protein family HMM PF00288 YP_001780586.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_001780587.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001780588.1 identified by match to protein family HMM PF01226 YP_001780589.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02910 YP_001780590.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide YP_001780591.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912 YP_001780592.1 identified by match to protein family HMM PF00994 YP_001780593.1 identified by Glimmer3 YP_001780595.1 identified by match to protein family HMM PF00005 YP_001780597.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001780598.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001780599.1 identified by match to protein family HMM PF00005 YP_001780600.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_001780601.1 identified by match to protein family HMM PF01497 YP_001780602.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_001780603.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_001780604.1 identified by match to protein family HMM PF00165 YP_001780605.1 identified by match to protein family HMM PF00583 YP_001780606.1 identified by match to protein family HMM PF00583 YP_001780607.1 identified by match to protein family HMM PF07081 YP_001780608.1 identified by Glimmer3 YP_001780609.1 identified by match to protein family HMM PF00248 YP_001780610.1 identified by match to protein family HMM PF04993 YP_001780611.1 identified by match to protein family HMM PF00583 YP_001780612.1 identified by match to protein family HMM PF03551 YP_001780617.1 catalyzes the formation of inosine from adenosine YP_001780618.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001780619.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001780621.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_001780622.1 identified by match to protein family HMM PF02915 YP_001780623.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001780624.1 identified by match to protein family HMM PF00072 YP_001780625.1 identified by match to protein family HMM PF07656 YP_001780626.1 identified by Glimmer3 YP_001780628.1 identified by match to protein family HMM PF04055 YP_001780629.1 identified by match to protein family HMM PF00004 YP_001780630.1 identified by Glimmer3 YP_001780631.1 identified by match to protein family HMM PF02652; match to protein family HMM PF03553; match to protein family HMM TIGR00795 YP_001780633.1 identified by match to protein family HMM PF01012 YP_001780634.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001780635.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001780638.1 identified by match to protein family HMM PF01047 YP_001780639.1 identified by match to protein family HMM PF04199 YP_001780640.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001780641.1 identified by match to protein family HMM PF04199 YP_001780642.1 identified by match to protein family HMM PF01047 YP_001780643.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_001780644.1 identified by match to protein family HMM PF03483 YP_001780645.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001780647.1 identified by match to protein family HMM PF01066 YP_001780648.1 identified by match to protein family HMM PF00440 YP_001780650.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_001780651.1 identified by match to protein family HMM PF00027 YP_001780652.1 identified by match to protein family HMM PF01965 YP_001780653.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001780654.1 identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001780656.1 identified by Glimmer3 YP_001780658.1 identified by match to protein family HMM PF04023 YP_001780659.1 identified by match to protein family HMM PF04023 YP_001780660.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_001780661.1 identified by Glimmer3 YP_001780662.1 identified by match to protein family HMM PF04239 YP_001780663.1 identified by match to protein family HMM PF00583 YP_001780664.1 identified by match to protein family HMM PF02557 YP_001780665.1 identified by match to protein family HMM TIGR03090 YP_001780666.1 identified by Glimmer3 YP_001780667.1 identified by match to protein family HMM PF00440 YP_001780668.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001780669.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001780670.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001780671.1 identified by Glimmer3 YP_001780672.1 identified by match to protein family HMM PF00067 YP_001780673.1 identified by match to protein family HMM PF00403 YP_001780674.1 identified by Glimmer3 YP_001780676.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001780677.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001780679.1 identified by match to protein family HMM PF00165 YP_001780680.1 identified by match to protein family HMM PF01032 YP_001780681.1 identified by match to protein family HMM PF01032 YP_001780682.1 identified by match to protein family HMM PF00005 YP_001780683.1 identified by match to protein family HMM PF01497 YP_001780684.1 identified by match to protein family HMM PF00165 YP_001780685.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001780686.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001780688.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_001780690.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_001780691.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839 YP_001780692.1 identified by match to protein family HMM PF03190 YP_001780693.1 identified by match to protein family HMM PF06081 YP_001780695.1 identified by match to protein family HMM PF02517 YP_001780696.1 identified by match to protein family HMM PF00753 YP_001780697.1 identified by match to protein family HMM PF00005 YP_001780698.1 identified by match to protein family HMM PF07670 YP_001780699.1 identified by match to protein family HMM PF03960 YP_001780701.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_001780702.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF07992 YP_001780703.1 identified by match to protein family HMM PF07892 YP_001780704.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881 YP_001780705.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001780706.1 identified by Glimmer3 YP_001780707.1 associated with arginine deiminase pathway genes; probably functions in arginine catabolism YP_001780708.1 identified by match to protein family HMM PF00571 YP_001780709.1 identified by Glimmer3 YP_001780710.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650 YP_001780711.1 identified by match to protein family HMM PF04023 YP_001780712.1 identified by match to protein family HMM PF07238 YP_001780713.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_001780714.1 identified by match to protein family HMM PF02839 YP_001780715.1 identified by match to protein family HMM PF00583 YP_001780716.1 identified by match to protein family HMM PF00005 YP_001780717.1 identified by match to protein family HMM PF00528 YP_001780718.1 identified by match to protein family HMM PF03180 YP_001780719.1 identified by match to protein family HMM PF03180 YP_001780720.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001780721.1 identified by Glimmer3 YP_001780723.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001780724.1 identified by match to protein family HMM PF02588 YP_001780726.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001780727.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_001780728.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_001780729.1 identified by Glimmer3 YP_001780730.1 identified by match to protein family HMM PF01966 YP_001780731.1 identified by match to protein family HMM PF00171 YP_001780732.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001780733.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001780734.1 identified by match to protein family HMM PF01047 YP_001780735.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797 YP_001780739.1 identified by match to protein family HMM PF00528 YP_001780740.1 identified by match to protein family HMM PF00528 YP_001780741.1 identified by match to protein family HMM PF00005 YP_001780743.1 identified by match to protein family HMM PF00583 YP_001780745.1 identified by Glimmer3 YP_001780746.1 identified by match to protein family HMM PF03956 YP_001780747.1 identified by match to protein family HMM PF00132 YP_001780748.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121 YP_001780750.1 identified by match to protein family HMM PF00571 YP_001780751.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001780754.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_001780755.1 identified by match to protein family HMM PF00266 YP_001780756.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001780757.1 identified by match to protein family HMM PF06245 YP_001780758.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_001780759.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001780760.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_001780761.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080 YP_001780763.1 identified by match to protein family HMM PF00857 YP_001780764.1 identified by match to protein family HMM PF00581 YP_001780767.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001780768.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_001780770.1 identified by match to protein family HMM PF00581 YP_001780771.1 identified by Glimmer3 YP_001780772.1 identified by match to protein family HMM PF01594 YP_001780773.1 identified by match to protein family HMM PF03819 YP_001780775.1 identified by Glimmer3 YP_001780776.1 identified by Glimmer3 YP_001780777.1 identified by match to protein family HMM PF01547 YP_001780778.1 identified by match to protein family HMM PF00528 YP_001780779.1 identified by match to protein family HMM PF00005 YP_001780782.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001780783.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_001780785.1 identified by match to protein family HMM PF04392 YP_001780786.1 identified by match to protein family HMM PF02653 YP_001780787.1 identified by match to protein family HMM PF00005 YP_001780788.1 identified by Glimmer3 YP_001780789.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001780790.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151; match to protein family HMM PF08449 YP_001780791.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08279 YP_001780792.1 identified by match to protein family HMM PF04227 YP_001780793.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745 YP_001780794.1 identified by match to protein family HMM PF04961 YP_001780795.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882 YP_001780796.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001780797.1 identified by match to protein family HMM PF00583 YP_001780798.1 identified by Glimmer3 YP_001780800.1 identified by match to protein family HMM PF02535 YP_001780801.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001780802.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_001780803.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001780804.1 identified by match to protein family HMM PF00497 YP_001780805.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_001780806.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268 YP_001780807.1 identified by Glimmer3 YP_001780808.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001780809.1 identified by Glimmer3 YP_001780810.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_001780811.1 identified by match to protein family HMM PF02518 YP_001780813.1 identified by match to protein family HMM PF00005 YP_001780815.1 identified by match to protein family HMM PF03009 YP_001780817.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_001780818.1 identified by match to protein family HMM PF00440 YP_001780819.1 identified by match to protein family HMM PF00999 YP_001780820.1 identified by match to protein family HMM PF02696 YP_001780821.1 identified by match to protein family HMM PF01593 YP_001780822.1 identified by match to protein family HMM PF00165 YP_001780823.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792 YP_001780824.1 identified by match to protein family HMM PF02055 YP_001780825.1 identified by match to protein family HMM PF00480 YP_001780826.1 identified by match to protein family HMM PF00232 YP_001780827.1 identified by match to protein family HMM PF00686; match to protein family HMM PF01373 YP_001780828.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001780829.1 identified by match to protein family HMM PF00392 YP_001780830.1 identified by match to protein family HMM PF00005 YP_001780836.1 identified by match to protein family HMM PF00704; match to protein family HMM PF01476; match to protein family HMM PF08239 YP_001780837.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001780838.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_001780839.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_001780840.1 identified by Glimmer3 YP_001780841.1 identified by Glimmer3 YP_001780843.1 identified by match to protein family HMM PF00561 YP_001780844.1 identified by match to protein family HMM PF01244 YP_001780845.1 identified by Glimmer3 YP_001780846.1 identified by match to protein family HMM PF02687 YP_001780847.1 identified by Glimmer3 YP_001780848.1 identified by match to protein family HMM PF00005 YP_001780849.1 identified by match to protein family HMM PF00528 YP_001780850.1 identified by match to protein family HMM PF00528 YP_001780852.1 identified by match to protein family HMM PF00496 YP_001780855.1 identified by match to protein family HMM PF05067 YP_001780858.1 identified by match to protein family HMM PF04525 YP_001780859.1 identified by Glimmer3 YP_001780860.1 identified by match to protein family HMM PF00692 YP_001780861.1 identified by match to protein family HMM TIGR02861 YP_001780864.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001780866.1 identified by match to protein family HMM PF00440 YP_001780867.1 identified by Glimmer3 YP_001780868.1 identified by match to protein family HMM PF00005 YP_001780870.1 identified by Glimmer3 YP_001780871.1 identified by Glimmer3 YP_001780872.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001780873.1 identified by Glimmer3 YP_001780874.1 identified by match to protein family HMM PF01381 YP_001780877.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_001780878.1 identified by match to protein family HMM PF00171 YP_001780879.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001780881.1 identified by match to protein family HMM PF09338 YP_001780882.1 Selenoprotein. identified by similarity to SP:P52217; match to protein family HMM PF07355; match to protein family HMM TIGR01917; match to protein family HMM TIGR01918 YP_001780883.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_001780884.1 identified by match to protein family HMM PF00085 YP_001780886.1 GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin YP_001780887.1 identified by match to protein family HMM PF08545 YP_001780888.1 identified by match to protein family HMM PF02504 YP_001780889.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_001780890.1 identified by match to protein family HMM PF07669 YP_001780891.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway YP_001780892.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_001780893.1 identified by match to protein family HMM PF00596 YP_001780894.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001780896.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001780897.1 identified by match to protein family HMM PF04239 YP_001780901.1 identified by Glimmer3 YP_001780904.1 identified by Glimmer3 YP_001780905.1 identified by Glimmer3 YP_001780908.1 molybdenum cofactor-binding protein; participates in purine salvage YP_001780909.1 FAD-binding subunit; with XdhA and XdhC participates in purine salvage YP_001780910.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001780911.1 identified by match to protein family HMM PF00383 YP_001780912.1 decatenates replicating daughter chromosomes YP_001780913.1 identified by match to protein family HMM PF02659 YP_001780915.1 identified by Glimmer3 YP_001780916.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_001780917.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_001780918.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001780919.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001780921.1 identified by match to protein family HMM PF00535 YP_001780926.1 identified by match to protein family HMM PF02583 YP_001780927.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_001780928.1 identified by match to protein family HMM PF00403 YP_001780929.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001780930.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001780931.1 identified by match to protein family HMM PF02517 YP_001780932.1 identified by match to protein family HMM PF02579 YP_001780933.1 identified by match to protein family HMM PF00072 YP_001780934.1 identified by match to protein family HMM PF02687 YP_001780935.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001780936.1 identified by match to protein family HMM PF01243 YP_001780937.1 identified by Glimmer3 YP_001780939.1 identified by Glimmer3 YP_001780940.1 identified by Glimmer3 YP_001780941.1 identified by Glimmer3 YP_001780946.1 identified by match to protein family HMM PF01230 YP_001780948.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_001780949.1 identified by match to protein family HMM PF07907 YP_001780950.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_001780951.1 identified by match to protein family HMM PF02386 YP_001780952.1 identified by Glimmer3 YP_001780953.1 identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573 YP_001780954.1 identified by match to protein family HMM PF07853 YP_001780955.1 identified by match to protein family HMM PF00392 YP_001780956.1 identified by match to protein family HMM PF01476; match to protein family HMM PF07486 YP_001780957.1 identified by Glimmer3 YP_001780958.1 identified by match to protein family HMM PF02915 YP_001780959.1 identified by match to protein family HMM PF04122 YP_001780960.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002 YP_001780961.1 identified by match to protein family HMM PF01255 YP_001780962.1 identified by Glimmer3 YP_001780963.1 identified by Glimmer3 YP_001780964.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001780965.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_001780966.1 identified by match to protein family HMM PF00037 YP_001780967.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001780968.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001780969.1 identified by match to protein family HMM PF02518 YP_001780970.1 identified by match to protein family HMM PF02687 YP_001780971.1 identified by match to protein family HMM PF00005 YP_001780972.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_001780973.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001780974.1 identified by match to protein family HMM PF07690 YP_001780975.1 identified by match to protein family HMM PF01497 YP_001780976.1 identified by match to protein family HMM PF01032 YP_001780977.1 identified by match to protein family HMM PF00005 YP_001780979.1 identified by Glimmer3 YP_001780981.1 identified by Glimmer3 YP_001780982.1 identified by Glimmer3 YP_001780984.1 identified by match to protein family HMM PF01761 YP_001780985.1 identified by match to protein family HMM TIGR01444 YP_001780986.1 identified by match to protein family HMM PF01261 YP_001780987.1 identified by match to protein family HMM PF02664 YP_001780988.1 identified by Glimmer3 YP_001780990.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_001780992.1 identified by Glimmer3 YP_001780996.1 identified by match to protein family HMM PF00037 YP_001780997.1 identified by Glimmer3 YP_001780998.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001780999.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_001781000.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_001781001.1 identified by match to protein family HMM PF05913 YP_001781002.1 identified by match to protein family HMM PF06475 YP_001781003.1 identified by match to protein family HMM PF06555 YP_001781006.1 identified by Glimmer3 YP_001781008.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF06875 YP_001781009.1 identified by match to protein family HMM PF00496 YP_001781010.1 identified by match to protein family HMM PF00528 YP_001781011.1 identified by match to protein family HMM PF00528 YP_001781012.1 identified by match to protein family HMM PF00005 YP_001781013.1 identified by match to protein family HMM PF00005 YP_001781015.1 identified by match to protein family HMM PF00950 YP_001781016.1 identified by match to protein family HMM PF00005 YP_001781017.1 identified by match to protein family HMM PF01297 YP_001781019.1 identified by match to protein family HMM PF00271 YP_001781020.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001781022.1 identified by match to protein family HMM PF00528 YP_001781023.1 identified by match to protein family HMM PF00005 YP_001781025.1 identified by match to protein family HMM PF01475 YP_001781026.1 identified by match to protein family HMM PF02001 YP_001781027.1 identified by match to protein family HMM PF00246; match to protein family HMM PF01471; match to protein family HMM PF01476 YP_001781028.1 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_001781029.1 identified by match to protein family HMM PF00324 YP_001781030.1 identified by match to protein family HMM PF08000 YP_001781031.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001781032.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001781033.1 identified by match to protein family HMM PF00005 YP_001781034.1 identified by match to protein family HMM PF01061 YP_001781035.1 identified by match to protein family HMM PF01061 YP_001781036.1 identified by Glimmer3 YP_001781037.1 identified by match to protein family HMM PF00881 YP_001781039.1 identified by match to protein family HMM PF00313 YP_001781040.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_001781041.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001781042.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_001781043.1 identified by match to protein family HMM PF01625 YP_001781044.1 identified by match to protein family HMM PF00005 YP_001781045.1 identified by match to protein family HMM PF02687 YP_001781047.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001781048.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001781049.1 identified by match to protein family HMM PF00005 YP_001781053.1 identified by match to protein family HMM PF00155 YP_001781054.1 identified by match to protein family HMM PF00497 YP_001781055.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001781056.1 identified by match to protein family HMM PF00005 YP_001781057.1 identified by match to protein family HMM PF01381 YP_001781058.1 identified by match to protein family HMM PF00768 YP_001781059.1 identified by match to protein family HMM PF00293 YP_001781061.1 identified by match to protein family HMM PF00465 YP_001781062.1 identified by Glimmer3 YP_001781063.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808 YP_001781064.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001781065.1 identified by match to protein family HMM PF00497 YP_001781066.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001781068.1 identified by Glimmer3 YP_001781069.1 identified by Glimmer3 YP_001781070.1 identified by match to protein family HMM PF02491 YP_001781071.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001781072.1 identified by match to protein family HMM PF01520 YP_001781073.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001781074.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001781075.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900 YP_001781078.1 identified by match to protein family HMM PF00465 YP_001781079.1 identified by match to protein family HMM PF05362 YP_001781080.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001781081.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001781082.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001781083.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001781084.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001781085.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_001781086.1 catalyzes the formation of oxaloacetate from L-aspartate YP_001781087.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001781088.1 identified by Glimmer3 YP_001781089.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_001781090.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001781091.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001781092.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_001781094.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214 YP_001781095.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_001781096.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_001781097.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001781098.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615 YP_001781099.1 identified by match to protein family HMM PF08478 YP_001781100.1 identified by match to protein family HMM PF05949 YP_001781101.1 identified by match to protein family HMM PF06947 YP_001781102.1 identified by match to protein family HMM PF05949 YP_001781103.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_001781104.1 identified by match to protein family HMM PF04472 YP_001781105.1 identified by match to protein family HMM PF02325 YP_001781107.1 identified by match to protein family HMM PF05103 YP_001781108.1 identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357 YP_001781109.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_001781110.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_001781111.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001781112.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02890 YP_001781113.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001781114.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001781115.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_001781116.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001781117.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_001781118.1 identified by match to protein family HMM PF01170 YP_001781119.1 identified by Glimmer3 YP_001781120.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_001781121.1 identified by match to protein family HMM PF00528 YP_001781122.1 identified by match to protein family HMM PF00005 YP_001781124.1 identified by match to protein family HMM PF01734 YP_001781126.1 identified by match to protein family HMM PF01208 YP_001781127.1 identified by match to protein family HMM PF03553 YP_001781128.1 identified by match to protein family HMM PF00111 YP_001781129.1 identified by match to protein family HMM PF02492 YP_001781131.1 identified by match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM TIGR02370 YP_001781132.1 catalyze the formation of methyl-coenzyme M from methylcobalamin and coenzyme M YP_001781133.1 identified by match to protein family HMM PF01208 YP_001781134.1 identified by match to protein family HMM PF00005 YP_001781135.1 identified by match to protein family HMM PF00528 YP_001781136.1 identified by match to protein family HMM PF03180 YP_001781137.1 identified by match to protein family HMM PF02493 YP_001781138.1 identified by match to protein family HMM PF00724 YP_001781139.1 catalyzes the formation of asparagine from aspartate and ammonia YP_001781140.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266 YP_001781141.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751 YP_001781142.1 identified by match to protein family HMM PF00488 YP_001781143.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_001781144.1 identified by match to protein family HMM PF04073 YP_001781145.1 identified by match to protein family HMM PF00005 YP_001781146.1 identified by match to protein family HMM PF02687 YP_001781147.1 identified by match to protein family HMM PF00440 YP_001781149.1 identified by match to protein family HMM PF00005 YP_001781150.1 identified by match to protein family HMM PF00528 YP_001781151.1 identified by match to protein family HMM PF00528 YP_001781152.1 identified by match to protein family HMM PF01547 YP_001781153.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_001781154.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001781155.1 identified by match to protein family HMM TIGR01909 YP_001781156.1 identified by match to protein family HMM PF03595 YP_001781158.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001781159.1 identified by match to protein family HMM PF03860 YP_001781160.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001781161.1 identified by match to protein family HMM PF01047 YP_001781163.1 identified by match to protein family HMM PF01638 YP_001781164.1 identified by match to protein family HMM PF00903 YP_001781165.1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated YP_001781166.1 identified by match to protein family HMM PF00165 YP_001781167.1 identified by match to protein family HMM PF06792 YP_001781169.1 identified by match to protein family HMM PF01381 YP_001781170.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001781171.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001781172.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001781173.1 identified by match to protein family HMM PF01325; match to protein family HMM PF02742 YP_001781175.1 identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277 YP_001781176.1 identified by similarity to GB:CAL83084.1 YP_001781177.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001781179.1 identified by match to protein family HMM PF04657 YP_001781181.1 identified by match to protein family HMM PF00027 YP_001781182.1 identified by match to protein family HMM PF00005 YP_001781183.1 identified by match to protein family HMM PF01061 YP_001781184.1 identified by match to protein family HMM PF01061 YP_001781185.1 identified by match to protein family HMM PF00196 YP_001781186.1 identified by match to protein family HMM PF06445 YP_001781187.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001781188.1 identified by match to protein family HMM PF06050 YP_001781189.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001781190.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367 YP_001781191.1 identified by match to protein family HMM PF04055 YP_001781192.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001781193.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_001781194.1 identified by match to protein family HMM PF02517 YP_001781195.1 identified by match to protein family HMM PF00015 YP_001781196.1 identified by match to protein family HMM PF06161 YP_001781198.1 identified by match to protein family HMM PF04198 YP_001781199.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_001781200.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_001781201.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_001781202.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_001781203.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001781204.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001781205.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001781206.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001781207.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001781208.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001781209.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_001781210.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_001781211.1 identified by match to protein family HMM PF04143 YP_001781212.1 identified by match to protein family HMM PF01206 YP_001781213.1 identified by match to protein family HMM PF04143 YP_001781214.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001781215.1 identified by match to protein family HMM PF01235 YP_001781216.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_001781217.1 identified by match to protein family HMM PF04143 YP_001781218.1 identified by match to protein family HMM PF00005 YP_001781221.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001781222.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001781223.1 identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078 YP_001781224.1 identified by match to protein family HMM PF00324 YP_001781225.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_001781226.1 identified by match to protein family HMM PF08876 YP_001781227.1 identified by match to protein family HMM PF01966 YP_001781228.1 identified by Glimmer3 YP_001781229.1 identified by Glimmer3 YP_001781230.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455 YP_001781231.1 identified by match to protein family HMM PF04607 YP_001781233.1 identified by match to protein family HMM PF00165 YP_001781234.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001781235.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463 YP_001781236.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001781237.1 identified by match to protein family HMM PF00480 YP_001781238.1 identified by match to protein family HMM PF00128 YP_001781239.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003 YP_001781240.1 identified by match to protein family HMM PF03372 YP_001781241.1 identified by match to protein family HMM TIGR02840 YP_001781245.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001781246.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001781247.1 identified by match to protein family HMM PF07690 YP_001781248.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001781249.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001781250.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001781252.1 identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453 YP_001781253.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_001781254.1 identified by match to protein family HMM PF02965 YP_001781255.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607 YP_001781257.1 identified by Glimmer3 YP_001781258.1 identified by Glimmer3 YP_001781259.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001781261.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_001781262.1 identified by match to protein family HMM TIGR02058 YP_001781263.1 identified by match to protein family HMM PF00676 YP_001781264.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001781265.1 identified by match to protein family HMM PF01513 YP_001781266.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_001781267.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_001781268.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_001781269.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_001781270.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_001781271.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001781272.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_001781273.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_001781274.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001781275.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_001781276.1 identified by match to protein family HMM PF00465 YP_001781277.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001781278.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001781279.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_001781280.1 identified by match to protein family HMM PF00805 YP_001781281.1 identified by Glimmer3 YP_001781282.1 identified by match to protein family HMM PF02368 YP_001781283.1 identified by Glimmer3 YP_001781287.1 identified by Glimmer3 YP_001781289.1 identified by match to protein family HMM PF01814 YP_001781290.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001781291.1 identified by match to protein family HMM PF00015 YP_001781292.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001781293.1 identified by match to protein family HMM PF06161 YP_001781294.1 identified by match to protein family HMM PF00106 YP_001781295.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001781296.1 identified by match to protein family HMM PF07656 YP_001781299.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_001781300.1 identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104 YP_001781301.1 identified by match to protein family HMM PF02663 YP_001781302.1 identified by match to protein family HMM PF00496 YP_001781303.1 identified by match to protein family HMM PF00528 YP_001781304.1 identified by match to protein family HMM PF00528 YP_001781305.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001781306.1 identified by match to protein family HMM PF00929 YP_001781307.1 identified by match to protein family HMM PF06207 YP_001781308.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001781309.1 identified by match to protein family HMM PF07690 YP_001781310.1 identified by match to protein family HMM PF00440 YP_001781312.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_001781313.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001781314.1 identified by Glimmer3 YP_001781317.1 identified by Glimmer3 YP_001781318.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08543 YP_001781319.1 identified by match to protein family HMM PF00188; match to protein family HMM PF01476; match to protein family HMM TIGR02899 YP_001781320.1 identified by Glimmer3 YP_001781321.1 identified by match to protein family HMM PF00313 YP_001781322.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001781323.1 identified by match to protein family HMM PF00005 YP_001781324.1 identified by match to protein family HMM PF04073 YP_001781325.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001781326.1 identified by Glimmer3 YP_001781327.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584 YP_001781328.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001781329.1 identified by match to protein family HMM PF00575 YP_001781330.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_001781331.1 identified by Glimmer3 YP_001781332.1 identified by match to protein family HMM PF00560; match to protein family HMM PF07532 YP_001781333.1 identified by match to protein family HMM PF01832 YP_001781334.1 identified by match to protein family HMM PF00210 YP_001781335.1 identified by Glimmer3 YP_001781336.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04509 YP_001781337.1 identified by match to protein family HMM PF04509 YP_001781338.1 identified by match to protein family HMM PF07670 YP_001781339.1 identified by match to protein family HMM PF00269 YP_001781340.1 identified by match to protein family HMM PF00269 YP_001781341.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001781343.1 Represses a number of genes involved in the response to DNA damage YP_001781344.1 identified by match to protein family HMM PF06838 YP_001781345.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_001781346.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001781347.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001781348.1 This protein performs the mismatch recognition step during the DNA repair process YP_001781349.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001781350.1 identified by match to protein family HMM PF00155 YP_001781352.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001781353.1 identified by match to protein family HMM PF00583 YP_001781354.1 identified by match to protein family HMM TIGR02906 YP_001781355.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001781356.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001781357.1 identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796 YP_001781358.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_001781359.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_001781360.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001781361.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001781363.1 identified by match to protein family HMM PF06354 YP_001781364.1 identified by match to protein family HMM PF00535 YP_001781365.1 identified by Glimmer3 YP_001781366.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001781367.1 identified by match to protein family HMM PF02683 YP_001781368.1 identified by match to protein family HMM PF00085 YP_001781369.1 identified by match to protein family HMM PF00795 YP_001781370.1 identified by Glimmer3 YP_001781371.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080 YP_001781372.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001781373.1 identified by match to protein family HMM PF00583 YP_001781375.1 identified by match to protein family HMM PF01906 YP_001781376.1 identified by Glimmer3 YP_001781378.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229 YP_001781379.1 identified by match to protein family HMM PF07228 YP_001781380.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229 YP_001781381.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_001781382.1 identified by match to protein family HMM PF01924 YP_001781383.1 identified by Glimmer3 YP_001781384.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_001781385.1 identified by Glimmer3 YP_001781386.1 identified by match to protein family HMM PF00173 YP_001781387.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072 YP_001781388.1 identified by match to protein family HMM PF00374 YP_001781389.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391 YP_001781390.1 identified by match to protein family HMM PF05857 YP_001781391.1 identified by Glimmer3 YP_001781392.1 identified by Glimmer3 YP_001781393.1 identified by Glimmer3 YP_001781394.1 identified by match to protein family HMM PF00005 YP_001781395.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_001781396.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512 YP_001781397.1 identified by match to protein family HMM PF01257 YP_001781398.1 identified by match to protein family HMM PF00999 YP_001781399.1 identified by match to protein family HMM PF03747 YP_001781400.1 identified by match to protein family HMM PF01594 YP_001781401.1 identified by match to protein family HMM PF00768 YP_001781403.1 identified by match to protein family HMM TIGR02874 YP_001781404.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_001781405.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_001781407.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_001781409.1 identified by match to protein family HMM PF03372 YP_001781411.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644 YP_001781412.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_001781413.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225 YP_001781415.1 identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831 YP_001781416.1 identified by Glimmer3 YP_001781417.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_001781418.1 identified by match to protein family HMM PF00324 YP_001781419.1 identified by match to protein family HMM PF00877 YP_001781420.1 identified by Glimmer3 YP_001781421.1 identified by Glimmer3 YP_001781423.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875 YP_001781424.1 identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860 YP_001781425.1 identified by match to protein family HMM PF04204; match to protein family HMM TIGR01001 YP_001781426.1 identified by match to protein family HMM PF00742; match to protein family HMM PF03447 YP_001781427.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_001781428.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_001781429.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_001781430.1 identified by match to protein family HMM PF01513 YP_001781431.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_001781432.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001781434.1 identified by match to protein family HMM PF00348 YP_001781435.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_001781436.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001781437.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_001781438.1 identified by match to protein family HMM PF03780 YP_001781440.1 identified by match to protein family HMM TIGR02830 YP_001781441.1 identified by match to protein family HMM TIGR02896 YP_001781442.1 identified by match to protein family HMM TIGR02829 YP_001781443.1 identified by match to protein family HMM TIGR02849 YP_001781444.1 identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848 YP_001781445.1 necessary for complete engulfment of forespore YP_001781446.1 identified by match to protein family HMM TIGR02858 YP_001781448.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001781449.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001781450.1 identified by match to protein family HMM PF01202 YP_001781452.1 identified by Glimmer3 YP_001781455.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001781456.1 identified by match to protein family HMM TIGR02532 YP_001781458.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001781462.1 identified by Glimmer3 YP_001781463.1 identified by Glimmer3 YP_001781467.1 identified by match to protein family HMM PF00589 YP_001781468.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_001781470.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157 YP_001781471.1 identified by Glimmer3 YP_001781473.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001781474.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_001781475.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001781476.1 identified by Glimmer3 YP_001781477.1 identified by match to protein family HMM PF01230 YP_001781478.1 identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788 YP_001781479.1 identified by Glimmer3 YP_001781480.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001781481.1 identified by match to protein family HMM PF03415; match to protein family HMM TIGR02806 YP_001781483.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001781484.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001781485.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_001781486.1 identified by match to protein family HMM PF00072 YP_001781487.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001781488.1 identified by match to protein family HMM PF00486 YP_001781492.1 identified by match to protein family HMM PF00005 YP_001781493.1 identified by Glimmer3 YP_001781494.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001781495.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001781496.1 identified by match to protein family HMM PF01047 YP_001781497.1 identified by match to protein family HMM PF00583 YP_001781498.1 identified by match to protein family HMM PF00899 YP_001781499.1 identified by match to protein family HMM PF02597 YP_001781500.1 identified by match to protein family HMM PF01314; match to protein family HMM PF02730 YP_001781501.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_001781502.1 identified by match to protein family HMM PF03473 YP_001781503.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001781504.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_001781505.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_001781506.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_001781507.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_001781508.1 identified by match to protein family HMM PF00005 YP_001781509.1 identified by match to protein family HMM PF00528 YP_001781510.1 identified by match to protein family HMM PF01547 YP_001781511.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001781512.1 identified by Glimmer3 YP_001781513.1 identified by match to protein family HMM PF09335 YP_001781514.1 identified by match to protein family HMM PF00005 YP_001781515.1 identified by match to protein family HMM PF02687 YP_001781516.1 identified by Glimmer3 YP_001781517.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001781518.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001781519.1 identified by match to protein family HMM PF00376 YP_001781520.1 identified by match to protein family HMM PF03358 YP_001781521.1 identified by match to protein family HMM PF00560 YP_001781522.1 identified by match to protein family HMM PF02839; match to protein family HMM TIGR03296 YP_001781523.1 identified by match to protein family HMM PF00158; match to protein family HMM PF07728 YP_001781525.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_001781526.1 identified by match to protein family HMM PF00375 YP_001781527.1 identified by match to protein family HMM PF00155 YP_001781528.1 identified by match to protein family HMM PF06354 YP_001781529.1 identified by match to protein family HMM PF00560 YP_001781530.1 identified by match to protein family HMM TIGR03296 YP_001781531.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001781532.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001781533.1 identified by match to protein family HMM PF02596 YP_001781534.1 identified by match to protein family HMM PF02361 YP_001781535.1 identified by match to protein family HMM PF00005 YP_001781537.1 identified by match to protein family HMM PF01168 YP_001781538.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001781539.1 identified by match to protein family HMM PF03323 YP_001781540.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001781541.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_001781542.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001781543.1 identified by match to protein family HMM TIGR01909 YP_001781544.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001781545.1 identified by match to protein family HMM PF04055 YP_001781546.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001781547.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_001781548.1 molecular chaperone YP_001781549.1 identified by match to protein family HMM PF00488 YP_001781550.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992 YP_001781551.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_001781552.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_001781553.1 identified by Glimmer3 YP_001781554.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848 YP_001781555.1 identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427 YP_001781556.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_001781557.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway YP_001781558.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001781560.1 identified by match to protein family HMM PF01042 YP_001781561.1 identified by match to protein family HMM PF04055 YP_001781562.1 identified by match to protein family HMM PF07859 YP_001781563.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_001781564.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001781565.1 identified by Glimmer3 YP_001781566.1 identified by match to protein family HMM PF01168 YP_001781568.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001781569.1 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis YP_001781570.1 identified by match to protein family HMM PF00860 YP_001781571.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001781572.1 identified by match to protein family HMM PF06354 YP_001781573.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001781574.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001781575.1 identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909 YP_001781576.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001781577.1 identified by match to protein family HMM PF00892 YP_001781578.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001781579.1 identified by match to protein family HMM PF00005 YP_001781580.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001781581.1 identified by match to protein family HMM PF00497 YP_001781583.1 identified by match to protein family HMM PF00266 YP_001781584.1 identified by match to protein family HMM PF00302 YP_001781588.1 identified by match to protein family HMM PF01381 YP_001781589.1 identified by Glimmer3 YP_001781590.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001781591.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001781592.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001781593.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250 YP_001781594.1 identified by Glimmer3 YP_001781595.1 identified by match to protein family HMM PF00209 YP_001781596.1 identified by match to protein family HMM PF08902 YP_001781597.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001781598.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_001781599.1 identified by match to protein family HMM PF01042 YP_001781600.1 identified by Glimmer3 YP_001781602.1 identified by match to protein family HMM PF00881 YP_001781603.1 identified by Glimmer3 YP_001781604.1 identified by Glimmer3 YP_001781606.1 similar to streptococcal 67 kDa myosin-cross-reactive antigen family protein; in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_001781607.1 identified by match to protein family HMM PF00440 YP_001781610.1 identified by Glimmer3 YP_001781611.1 identified by Glimmer3 YP_001781612.1 identified by Glimmer3 YP_001781613.1 identified by match to protein family HMM PF00132 YP_001781614.1 identified by match to protein family HMM PF01041 YP_001781615.1 identified by Glimmer3 YP_001781616.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01208 YP_001781617.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_001781622.1 identified by match to protein family HMM PF04892 YP_001781623.1 Catalyzes the deamination of cytosine to uracil and ammonia YP_001781624.1 identified by match to protein family HMM PF02133 YP_001781625.1 identified by Glimmer3 YP_001781626.1 identified by match to protein family HMM PF04055 YP_001781627.1 identified by Glimmer3 YP_001781628.1 identified by Glimmer3 YP_001781631.1 identified by Glimmer3 YP_001781632.1 identified by Glimmer3 YP_001781633.1 identified by match to protein family HMM PF03235; match to protein family HMM PF07510 YP_001781636.1 identified by Glimmer3 YP_001781637.1 identified by Glimmer3 YP_001781640.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_001781641.1 identified by Glimmer3 YP_001781642.1 identified by Glimmer3 YP_001781643.1 identified by match to protein family HMM PF03235 YP_001781645.1 identified by Glimmer3 YP_001781646.1 identified by Glimmer3 YP_001781648.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001781649.1 identified by match to protein family HMM PF00535 YP_001781650.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535 YP_001781651.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231 YP_001781652.1 identified by match to protein family HMM PF02839; match to protein family HMM PF03272 YP_001781653.1 identified by match to protein family HMM PF00936 YP_001781654.1 identified by match to protein family HMM PF06130 YP_001781655.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02518 YP_001781656.1 identified by match to protein family HMM PF00936 YP_001781657.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249 YP_001781658.1 identified by match to protein family HMM PF03319 YP_001781659.1 identified by match to protein family HMM PF00936 YP_001781660.1 identified by match to protein family HMM TIGR02529 YP_001781663.1 identified by match to protein family HMM PF00936 YP_001781664.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001781665.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_001781667.1 identified by match to protein family HMM PF00936 YP_001781668.1 identified by match to protein family HMM PF00936 YP_001781669.1 identified by Glimmer3 YP_001781670.1 identified by Glimmer3 YP_001781672.1 identified by match to protein family HMM PF00376 YP_001781673.1 identified by match to protein family HMM PF00465 YP_001781674.1 identified by match to protein family HMM PF01554 YP_001781677.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001781678.1 identified by match to protein family HMM PF00583; match to protein family HMM PF01047 YP_001781680.1 identified by match to protein family HMM PF09234 YP_001781682.1 identified by match to protein family HMM TIGR01764 YP_001781683.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_001781684.1 identified by Glimmer3 YP_001781685.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001781686.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001781687.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_001781690.1 identified by match to protein family HMM PF00005 YP_001781691.1 identified by match to protein family HMM PF02687 YP_001781692.1 FAD/NAD(P)-binding domain YP_001781695.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001781696.1 identified by match to protein family HMM PF01261 YP_001781697.1 identified by match to protein family HMM PF01761 YP_001781698.1 identified by match to protein family HMM PF02687 YP_001781699.1 identified by match to protein family HMM PF00005 YP_001781701.1 identified by Glimmer3 YP_001781702.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_001781703.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_001781704.1 identified by match to protein family HMM PF02302 YP_001781705.1 identified by match to protein family HMM PF00359 YP_001781706.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_001781707.1 identified by Glimmer3 YP_001781708.1 identified by Glimmer3 YP_001781710.1 identified by match to protein family HMM PF00132 YP_001781712.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001781715.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001781717.1 identified by Glimmer3 YP_001781718.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_001781721.1 identified by Glimmer3 YP_001781722.1 identified by Glimmer3 YP_001781723.1 identified by Glimmer3 YP_001781725.1 identified by Glimmer3 YP_001781727.1 identified by match to protein family HMM TIGR01760 YP_001781729.1 identified by Glimmer3 YP_001781730.1 similar to Bacteriophage A118 protein gp15 YP_001781731.1 identified by Glimmer3 YP_001781732.1 identified by Glimmer3 YP_001781733.1 identified by Glimmer3 YP_001781734.1 identified by Glimmer3 YP_001781735.1 identified by Glimmer3 YP_001781736.1 identified by Glimmer3 YP_001781737.1 identified by Glimmer3 YP_001781739.1 identified by Glimmer3 YP_001781742.1 identified by Glimmer3 YP_001781744.1 identified by match to protein family HMM PF05133; match to protein family HMM TIGR01538 YP_001781746.1 identified by Glimmer3 YP_001781749.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR01636 YP_001781750.1 identified by Glimmer3 YP_001781751.1 identified by match to protein family HMM PF08706; match to protein family HMM TIGR01613 YP_001781752.1 identified by match to protein family HMM PF00145; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00675 YP_001781754.1 identified by Glimmer3 YP_001781755.1 identified by match to protein family HMM PF05037 YP_001781758.1 identified by Glimmer3 YP_001781761.1 identified by match to protein family HMM PF01870; match to protein family HMM PF08774 YP_001781762.1 identified by match to protein family HMM PF07083 YP_001781764.1 identified by match to protein family HMM PF00271 YP_001781769.1 identified by Glimmer3 YP_001781771.1 identified by match to protein family HMM PF01381 YP_001781772.1 identified by match to protein family HMM PF06114 YP_001781773.1 identified by Glimmer3 YP_001781774.1 identified by match to protein family HMM PF00589 YP_001781775.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_001781776.1 identified by match to protein family HMM PF00376 YP_001781777.1 identified by Glimmer3 YP_001781782.1 identified by match to protein family HMM PF03787 YP_001781783.1 identified by match to protein family HMM PF03787 YP_001781785.1 identified by Glimmer3 YP_001781786.1 identified by match to protein family HMM TIGR01877 YP_001781787.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_001781788.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_001781789.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001781790.1 identified by match to protein family HMM PF00903 YP_001781791.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368 YP_001781792.1 identified by match to protein family HMM PF01047 YP_001781794.1 identified by match to protein family HMM PF07859 YP_001781796.1 identified by Glimmer3 YP_001781797.1 identified by match to protein family HMM PF00324 YP_001781798.1 identified by match to protein family HMM PF00069 YP_001781799.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001781801.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001781802.1 identified by match to protein family HMM PF01012 YP_001781803.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001781804.1 identified by match to protein family HMM PF06050 YP_001781805.1 identified by match to protein family HMM PF06050 YP_001781806.1 identified by match to protein family HMM PF02515 YP_001781807.1 identified by Glimmer3 YP_001781808.1 identified by match to protein family HMM PF00037 YP_001781809.1 identified by match to protein family HMM PF06050 YP_001781810.1 identified by match to protein family HMM PF01869; match to protein family HMM PF06050; match to protein family HMM TIGR00241 YP_001781811.1 identified by match to protein family HMM PF00015 YP_001781813.1 identified by match to protein family HMM PF02275 YP_001781814.1 identified by match to protein family HMM PF00583 YP_001781815.1 identified by match to protein family HMM PF00903 YP_001781816.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791 YP_001781817.1 identified by Glimmer3 YP_001781818.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_001781820.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001781821.1 identified by Glimmer3 YP_001781822.1 identified by match to protein family HMM PF02517 YP_001781823.1 identified by match to protein family HMM PF03734 YP_001781824.1 identified by match to protein family HMM PF00440 YP_001781828.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001781829.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_001781830.1 identified by Glimmer3 YP_001781831.1 identified by match to protein family HMM PF01155 YP_001781832.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_001781833.1 identified by match to protein family HMM PF02579 YP_001781834.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656 YP_001781835.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656 YP_001781836.1 identified by match to protein family HMM PF02579 YP_001781837.1 identified by Glimmer3 YP_001781838.1 identified by match to protein family HMM PF00691 YP_001781839.1 With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_001781840.1 identified by match to protein family HMM PF04122 YP_001781843.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733 YP_001781844.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_001781845.1 identified by match to protein family HMM PF01212 YP_001781846.1 identified by Glimmer3 YP_001781847.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_001781848.1 identified by match to protein family HMM PF00106 YP_001781850.1 identified by match to protein family HMM PF00005 YP_001781851.1 identified by match to protein family HMM PF00583 YP_001781852.1 identified by match to protein family HMM PF01047 YP_001781853.1 identified by Glimmer3 YP_001781855.1 identified by match to protein family HMM PF01208 YP_001781856.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_001781857.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_001781858.1 identified by match to protein family HMM PF00324 YP_001781859.1 identified by match to protein family HMM PF01661 YP_001781860.1 identified by match to protein family HMM PF06961 YP_001781861.1 identified by Glimmer3 YP_001781862.1 identified by match to protein family HMM PF01047 YP_001781864.1 identified by Glimmer3 YP_001781865.1 identified by match to protein family HMM PF02110 YP_001781866.1 identified by match to protein family HMM TIGR02359 YP_001781867.1 identified by match to protein family HMM PF00583 YP_001781868.1 identified by match to protein family HMM PF00753 YP_001781870.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_001781871.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_001781872.1 identified by match to protein family HMM PF02632 YP_001781874.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047 YP_001781876.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001781877.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001781878.1 identified by Glimmer3 YP_001781880.1 identified by Glimmer3 YP_001781881.1 identified by match to protein family HMM PF02275; match to protein family HMM PF03417 YP_001781882.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_001781883.1 identified by Glimmer3 YP_001781884.1 identified by Glimmer3 YP_001781890.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_001781891.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_001781892.1 identified by match to protein family HMM PF00005 YP_001781893.1 identified by match to protein family HMM PF00664 YP_001781894.1 identified by match to protein family HMM PF00165 YP_001781895.1 identified by Glimmer3 YP_001781898.1 identified by match to protein family HMM PF00005 YP_001781899.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001781900.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001781901.1 identified by match to protein family HMM PF00929 YP_001781902.1 identified by match to protein family HMM PF07876 YP_001781904.1 identified by match to protein family HMM PF00753 YP_001781905.1 identified by match to protein family HMM PF01381 YP_001781906.1 involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links YP_001781907.1 identified by Glimmer3 YP_001781908.1 identified by Glimmer3 YP_001781909.1 identified by Glimmer3 YP_001781910.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753 YP_001781911.1 identified by match to protein family HMM PF00171 YP_001781912.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001781913.1 identified by match to protein family HMM PF01979 YP_001781914.1 identified by Glimmer3 YP_001781916.1 identified by match to protein family HMM PF02366 YP_001781919.1 identified by Glimmer3 YP_001781920.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_001781921.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001781922.1 identified by Glimmer3 YP_001781923.1 identified by Glimmer3 YP_001781925.1 identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001781926.1 identified by Glimmer3 YP_001781928.1 identified by match to protein family HMM PF03551 YP_001781929.1 identified by Glimmer3 YP_001781931.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550 YP_001781932.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001781933.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001781934.1 identified by match to protein family HMM PF00627 YP_001781935.1 identified by Glimmer3 YP_001781937.1 identified by match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_001781938.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001781939.1 identified by match to protein family HMM PF04070 YP_001781940.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_001781941.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001781942.1 identified by match to protein family HMM PF00892; match to protein family HMM PF00893 YP_001781944.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_001781945.1 identified by match to protein family HMM PF04232 YP_001781946.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001781947.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001781948.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_001781949.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_001781950.1 identified by match to protein family HMM PF01580 YP_001781951.1 identified by match to protein family HMM PF00574 YP_001781952.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_001781953.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_001781954.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001781955.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_001781956.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001781957.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_001781958.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_001781959.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_001781960.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001781961.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001781962.1 identified by match to protein family HMM PF01248 YP_001781963.1 identified by match to protein family HMM PF04296 YP_001781964.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001781965.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001781966.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_001781967.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001781968.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_001781969.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001781970.1 identified by match to protein family HMM PF01594 YP_001781971.1 identified by Glimmer3 YP_001781972.1 identified by Glimmer3 YP_001781973.1 identified by match to protein family HMM PF01148 YP_001781974.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_001781975.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001781976.1 Catalyzes the phosphorylation of UMP to UDP YP_001781977.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001781978.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001781979.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_001781980.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_001781981.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_001781982.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_001781983.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_001781984.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001781985.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_001781986.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001781987.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001781988.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001781989.1 Essential for efficient processing of 16S rRNA YP_001781991.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001781992.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_001781993.1 identified by match to protein family HMM PF04297 YP_001781994.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_001781995.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168 YP_001781996.1 identified by match to protein family HMM PF04055 YP_001781997.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001781998.1 carries the fatty acid chain in fatty acid biosynthesis YP_001781999.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001782000.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001782001.1 identified by match to protein family HMM PF02620 YP_001782002.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_001782003.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_001782005.1 Selenoprotein. identified by similarity to GB:CAB38127.2 YP_001782006.1 identified by Glimmer3 YP_001782007.1 identified by match to protein family HMM PF09338 YP_001782008.1 identified by Glimmer3 YP_001782009.1 identified by match to protein family HMM PF01512 YP_001782011.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001782014.1 identified by Glimmer3 YP_001782015.1 identified by match to protein family HMM PF00324 YP_001782017.1 identified by match to protein family HMM PF05544 YP_001782020.1 Selenoprotein. identified by similarity to GB:CAB38127.2 YP_001782021.1 identified by Glimmer3 YP_001782022.1 identified by match to protein family HMM PF09338 YP_001782023.1 identified by Glimmer3 YP_001782024.1 identified by match to protein family HMM PF01512 YP_001782025.1 identified by Glimmer3 YP_001782026.1 identified by match to protein family HMM PF01512 YP_001782027.1 identified by Glimmer3 YP_001782031.1 identified by match to protein family HMM PF01512 YP_001782032.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00571; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_001782033.1 identified by match to protein family HMM PF05636 YP_001782034.1 identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871 YP_001782036.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001782037.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_001782038.1 catalyzes branch migration in Holliday junction intermediates YP_001782039.1 identified by match to protein family HMM PF02734 YP_001782040.1 identified by match to protein family HMM PF03780 YP_001782041.1 required for 70S ribosome assembly YP_001782042.1 identified by Glimmer3 YP_001782044.1 identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378 YP_001782045.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_001782046.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_001782047.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714 YP_001782048.1 identified by match to protein family HMM PF00481 YP_001782049.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_001782050.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_001782051.1 identified by match to protein family HMM PF04298 YP_001782052.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_001782053.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001782054.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001782055.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_001782056.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001782057.1 Essential for recycling GMP and indirectly, cGMP YP_001782058.1 identified by match to protein family HMM PF04025 YP_001782059.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255 YP_001782060.1 identified by match to protein family HMM PF00710 YP_001782061.1 identified by match to protein family HMM TIGR02836 YP_001782063.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001782064.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001782065.1 identified by match to protein family HMM PF04459 YP_001782066.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_001782067.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001782068.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_001782069.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_001782070.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_001782071.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001782072.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001782073.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_001782074.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_001782075.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_001782076.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_001782077.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_001782078.1 identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854 YP_001782079.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001782080.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_001782081.1 identified by match to protein family HMM PF00535 YP_001782082.1 identified by Glimmer3 YP_001782083.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_001782084.1 identified by match to protein family HMM PF01488; match to protein family HMM PF08501 YP_001782085.1 identified by match to protein family HMM PF04545 YP_001782086.1 identified by Glimmer3 YP_001782087.1 identified by match to protein family HMM PF01381 YP_001782088.1 identified by match to protein family HMM PF01381 YP_001782089.1 identified by Glimmer3 YP_001782091.1 identified by Glimmer3 YP_001782092.1 identified by match to protein family HMM PF01076 YP_001782094.1 identified by match to protein family HMM PF02534 YP_001782095.1 identified by match to protein family HMM PF01381 YP_001782096.1 identified by match to protein family HMM PF00239 YP_001782097.1 identified by Glimmer3 YP_001782100.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_001782105.1 identified by Glimmer3 YP_001782106.1 identified by Glimmer3 YP_001782107.1 identified by Glimmer3 YP_001782112.1 identified by match to protein family HMM TIGR01760 YP_001782114.1 identified by match to protein family HMM TIGR01603 YP_001782116.1 identified by match to protein family HMM PF07772; match to protein family HMM TIGR01725 YP_001782117.1 identified by match to protein family HMM PF06264; match to protein family HMM TIGR01563 YP_001782118.1 identified by match to protein family HMM PF05135; match to protein family HMM TIGR01560 YP_001782119.1 identified by match to protein family HMM PF05065 YP_001782120.1 identified by match to protein family HMM PF00574 YP_001782121.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_001782122.1 identified by match to protein family HMM PF03354 YP_001782123.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_001782124.1 identified by Glimmer3 YP_001782128.1 identified by match to protein family HMM PF00589 YP_001782131.1 identified by Glimmer3 YP_001782133.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_001782134.1 identified by Glimmer3 YP_001782136.1 identified by Glimmer3 YP_001782137.1 identified by Glimmer3 YP_001782138.1 identified by Glimmer3 YP_001782139.1 identified by Glimmer3 YP_001782140.1 identified by Glimmer3 YP_001782142.1 identified by Glimmer3 YP_001782143.1 identified by Glimmer3 YP_001782144.1 identified by Glimmer3 YP_001782147.1 identified by match to protein family HMM TIGR01714 YP_001782150.1 identified by Glimmer3 YP_001782152.1 identified by Glimmer3 YP_001782153.1 identified by Glimmer3 YP_001782154.1 identified by match to protein family HMM PF01381 YP_001782155.1 identified by match to protein family HMM PF01381 YP_001782156.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_001782157.1 identified by match to protein family HMM PF04542 YP_001782160.1 identified by Glimmer3 YP_001782161.1 identified by match to protein family HMM TIGR02271 YP_001782162.1 identified by match to protein family HMM TIGR02271 YP_001782164.1 identified by Glimmer3 YP_001782166.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616 YP_001782167.1 identified by Glimmer3 YP_001782168.1 identified by match to protein family HMM PF00905 YP_001782169.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_001782170.1 identified by match to protein family HMM PF01136 YP_001782171.1 identified by match to protein family HMM PF01596 YP_001782172.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_001782173.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_001782174.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_001782175.1 identified by match to protein family HMM PF01475 YP_001782176.1 identified by match to protein family HMM PF06949 YP_001782177.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001782178.1 identified by match to protein family HMM PF06135 YP_001782179.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001782180.1 identified by match to protein family HMM PF01594 YP_001782182.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR03419 YP_001782183.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR03402 YP_001782184.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001782185.1 identified by match to protein family HMM PF00004 YP_001782186.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_001782187.1 identified by match to protein family HMM PF03547 YP_001782188.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001782189.1 identified by match to protein family HMM PF01206; match to protein family HMM TIGR03527 YP_001782190.1 catalyzes the formation of L-proline from L-ornithine YP_001782191.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001782192.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001782195.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857 YP_001782196.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001782197.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326 YP_001782200.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_001782202.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550 YP_001782203.1 identified by match to protein family HMM PF00583 YP_001782207.1 identified by Glimmer3 YP_001782208.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_001782209.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_001782210.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001782211.1 identified by match to protein family HMM PF06738 YP_001782213.1 identified by match to protein family HMM PF02583 YP_001782214.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001782216.1 identified by Glimmer3 YP_001782217.1 identified by Glimmer3 YP_001782218.1 identified by Glimmer3 YP_001782220.1 catalyzes the removal of amino acids from the N termini of peptides YP_001782221.1 identified by match to protein family HMM PF01544 YP_001782222.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_001782223.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001782224.1 identified by match to protein family HMM PF05979 YP_001782225.1 identified by match to protein family HMM PF09335 YP_001782226.1 identified by match to protein family HMM PF09335 YP_001782227.1 identified by match to protein family HMM PF02754 YP_001782230.1 identified by match to protein family HMM PF00535 YP_001782231.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_001782232.1 identified by Glimmer3 YP_001782234.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_001782236.1 identified by match to protein family HMM PF01156 YP_001782237.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_001782238.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_001782239.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_001782240.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_001782241.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_001782242.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex YP_001782243.1 identified by match to protein family HMM PF01991 YP_001782244.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_001782245.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. YP_001782247.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_001782249.1 identified by match to protein family HMM PF00882 YP_001782251.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001782252.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001782253.1 identified by Glimmer3 YP_001782254.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene YP_001782255.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene YP_001782258.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937 YP_001782259.1 identified by match to protein family HMM PF07238 YP_001782260.1 identified by match to protein family HMM PF01656 YP_001782261.1 positive regulator of class III flagellar genes YP_001782262.1 membrane protein involved in the flagellar export apparatus YP_001782263.1 FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined YP_001782264.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_001782265.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_001782266.1 identified by match to protein family HMM TIGR03500 YP_001782267.1 identified by match to protein family HMM PF03748 YP_001782268.1 identified by match to protein family HMM PF00691 YP_001782269.1 identified by match to protein family HMM PF01618 YP_001782270.1 identified by match to protein family HMM PF06289 YP_001782271.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR03506 YP_001782272.1 identified by match to protein family HMM TIGR02530 YP_001782273.1 identified by match to protein family HMM PF03963 YP_001782274.1 identified by match to protein family HMM PF02120 YP_001782275.1 identified by match to protein family HMM TIGR02473 YP_001782276.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545; match to protein family HMM TIGR03496; match to protein family HMM TIGR03497 YP_001782278.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001782279.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001782280.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_001782281.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_001782282.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_001782283.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001782285.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001782286.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001782289.1 identified by match to protein family HMM PF00614 YP_001782292.1 identified by match to protein family HMM PF04892 YP_001782293.1 identified by match to protein family HMM PF01943 YP_001782294.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001782295.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_001782296.1 identified by match to protein family HMM PF02348; match to protein family HMM PF04101 YP_001782300.1 identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031 YP_001782301.1 identified by match to protein family HMM PF02397 YP_001782302.1 identified by match to protein family HMM TIGR01007 YP_001782303.1 identified by match to protein family HMM PF02811 YP_001782304.1 identified by match to protein family HMM PF02706 YP_001782305.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_001782307.1 identified by Glimmer3 YP_001782309.1 identified by match to protein family HMM PF00015 YP_001782310.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001782312.1 undetermined role; similar to CarB protein but much smaller YP_001782313.1 identified by Glimmer3 YP_001782314.1 identified by match to protein family HMM PF01973 YP_001782316.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_001782317.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_001782318.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_001782319.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_001782320.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_001782321.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001782322.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001782324.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02655 YP_001782325.1 identified by Glimmer3 YP_001782326.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_001782327.1 identified by match to protein family HMM PF02350 YP_001782328.1 identified by match to protein family HMM PF02585 YP_001782329.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911 YP_001782330.1 identified by match to protein family HMM PF02348 YP_001782331.1 identified by match to protein family HMM PF00483; match to protein family HMM PF00571 YP_001782332.1 identified by match to protein family HMM PF00535 YP_001782333.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001782335.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535 YP_001782336.1 identified by match to protein family HMM PF00535 YP_001782337.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001782339.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195 YP_001782340.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_001782342.1 identified by match to protein family HMM PF03646 YP_001782343.1 affects carbohydrate metabolism; has regulatory role in many processes YP_001782344.1 binds to flagellin and appears to stabilize flagellin during flagella assembly YP_001782345.1 identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550 YP_001782346.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492 YP_001782347.1 identified by match to protein family HMM PF05130 YP_001782348.1 identified by match to protein family HMM PF04316 YP_001782349.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001782350.1 identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397 YP_001782351.1 identified by match to protein family HMM PF01584 YP_001782352.1 identified by match to protein family HMM PF00072 YP_001782353.1 identified by match to protein family HMM PF04509 YP_001782354.1 identified by match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194 YP_001782355.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_001782356.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339 YP_001782357.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_001782358.1 identified by match to protein family HMM PF01584 YP_001782359.1 identified by match to protein family HMM PF03961 YP_001782360.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830 YP_001782361.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001782362.1 identified by match to protein family HMM PF01063 YP_001782363.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_001782365.1 identified by Glimmer3 YP_001782366.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_001782367.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001782368.1 identified by Glimmer3 YP_001782369.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001782370.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_001782371.1 identified by match to protein family HMM PF01261 YP_001782372.1 identified by match to protein family HMM PF01436 YP_001782373.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001782375.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_001782376.1 identified by match to protein family HMM PF04309 YP_001782377.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001782378.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001782380.1 identified by match to protein family HMM PF00999 YP_001782382.1 identified by Glimmer3 YP_001782383.1 identified by match to protein family HMM PF01522 YP_001782384.1 identified by Glimmer3 YP_001782385.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_001782386.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753 YP_001782387.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001782388.1 identified by match to protein family HMM PF00165; match to protein family HMM PF07883 YP_001782389.1 identified by match to protein family HMM PF02016 YP_001782391.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_001782392.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_001782393.1 identified by match to protein family HMM PF01906 YP_001782394.1 identified by match to protein family HMM PF04892 YP_001782396.1 identified by match to protein family HMM PF00005 YP_001782397.1 identified by match to protein family HMM PF00392 YP_001782398.1 identified by match to protein family HMM PF04892 YP_001782399.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001782401.1 identified by match to protein family HMM PF02073 YP_001782402.1 identified by match to protein family HMM PF05504 YP_001782403.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001782404.1 identified by match to protein family HMM PF03323 YP_001782405.1 identified by Glimmer3 YP_001782407.1 identified by match to protein family HMM PF01522 YP_001782408.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_001782410.1 identified by Glimmer3 YP_001782411.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001782412.1 identified by match to protein family HMM PF00582 YP_001782413.1 identified by match to protein family HMM PF00037 YP_001782414.1 catalyzes the formation of glutamate from glutamine YP_001782415.1 identified by match to protein family HMM PF06725 YP_001782417.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001782419.1 identified by match to protein family HMM PF00268 YP_001782420.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001782423.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001782424.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines YP_001782425.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001782426.1 identified by match to protein family HMM PF00156 YP_001782427.1 identified by match to protein family HMM PF02698 YP_001782429.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_001782430.1 identified by match to protein family HMM PF00005 YP_001782432.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_001782433.1 identified by Glimmer3 YP_001782434.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001782435.1 identified by match to protein family HMM PF00293 YP_001782436.1 identified by match to protein family HMM PF01475 YP_001782437.1 identified by Glimmer3 YP_001782438.1 identified by match to protein family HMM PF00704 YP_001782439.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_001782440.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221 YP_001782441.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001782442.1 identified by Glimmer3 YP_001782443.1 identified by Glimmer3 YP_001782444.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001782445.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_001782446.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_001782447.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001782448.1 identified by match to protein family HMM PF01458 YP_001782449.1 identified by match to protein family HMM PF00005 YP_001782451.1 identified by match to protein family HMM PF01475 YP_001782452.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797 YP_001782453.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_001782454.1 identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001782455.1 identified by match to protein family HMM PF00665 YP_001782456.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_001782457.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_001782459.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001782460.1 identified by match to protein family HMM PF00941 YP_001782461.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_001782462.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_001782463.1 identified by match to protein family HMM PF00232 YP_001782464.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001782465.1 identified by match to protein family HMM PF00999 YP_001782466.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001782467.1 identified by match to protein family HMM PF01510 YP_001782469.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_001782470.1 identified by match to protein family HMM PF00005 YP_001782472.1 identified by match to protein family HMM PF00199 YP_001782473.1 identified by Glimmer3 YP_001782474.1 identified by match to protein family HMM PF00583 YP_001782475.1 identified by match to protein family HMM PF04073 YP_001782476.1 identified by Glimmer3 YP_001782477.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001782478.1 identified by match to protein family HMM PF00165 YP_001782480.1 identified by match to protein family HMM PF06125 YP_001782481.1 identified by match to protein family HMM PF06125 YP_001782482.1 identified by match to protein family HMM PF08867 YP_001782483.1 identified by Glimmer3 YP_001782484.1 identified by Glimmer3 YP_001782485.1 identified by match to protein family HMM PF00440 YP_001782487.1 identified by match to protein family HMM PF04657 YP_001782488.1 identified by Glimmer3 YP_001782489.1 identified by Glimmer3 YP_001782490.1 identified by Glimmer3 YP_001782492.1 identified by Glimmer3 YP_001782496.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_001782497.1 identified by Glimmer3 YP_001782498.1 identified by match to protein family HMM PF00884 YP_001782499.1 identified by match to protein family HMM PF01925 YP_001782500.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001782501.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_001782502.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001782503.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_001782504.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_001782505.1 identified by match to protein family HMM PF00753 YP_001782506.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_001782508.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001782509.1 identified by match to protein family HMM PF03323 YP_001782510.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_001782511.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001782512.1 involved in de novo purine biosynthesis YP_001782513.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_001782514.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001782515.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001782516.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001782517.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_001782518.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311 YP_001782519.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases YP_001782520.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS YP_001782521.1 with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase YP_001782522.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316 YP_001782523.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_001782524.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_001782525.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_001782526.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001782527.1 identified by match to protein family HMM TIGR03172 YP_001782528.1 identified by match to protein family HMM TIGR03310 YP_001782529.1 identified by match to protein family HMM TIGR03309 YP_001782530.1 identified by match to protein family HMM PF02625 YP_001782532.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_001782533.1 identified by match to protein family HMM PF00005 YP_001782534.1 identified by match to protein family HMM PF01497 YP_001782535.1 identified by Glimmer3 YP_001782536.1 identified by match to protein family HMM PF00657 YP_001782537.1 identified by match to protein family HMM PF02698 YP_001782538.1 identified by match to protein family HMM PF00860 YP_001782539.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001782541.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001782542.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_001782543.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001782544.1 identified by match to protein family HMM PF01546 YP_001782546.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001782547.1 identified by match to protein family HMM PF01910 YP_001782548.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001782549.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134 YP_001782550.1 identified by match to protein family HMM PF04456 YP_001782553.1 identified by match to protein family HMM PF00005 YP_001782554.1 identified by match to protein family HMM PF00392 YP_001782556.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_001782557.1 identified by match to protein family HMM PF00037 YP_001782558.1 identified by match to protein family HMM PF00027 YP_001782559.1 identified by match to protein family HMM PF07486 YP_001782561.1 identified by match to protein family HMM PF07883 YP_001782562.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001782563.1 identified by match to protein family HMM PF03009 YP_001782565.1 identified by match to protein family HMM PF00282 YP_001782566.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001782567.1 identified by match to protein family HMM PF02591 YP_001782568.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_001782569.1 identified by match to protein family HMM PF04816 YP_001782571.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_001782572.1 synthesizes RNA primers at the replication forks YP_001782573.1 dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001782574.1 identified by match to protein family HMM TIGR02906 YP_001782575.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001782576.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08279 YP_001782577.1 identified by match to protein family HMM PF00627 YP_001782578.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001782579.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_001782580.1 identified by match to protein family HMM PF01219; match to protein family HMM PF01569 YP_001782581.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_001782582.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277 YP_001782583.1 identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876 YP_001782584.1 identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856 YP_001782585.1 identified by match to protein family HMM PF02637 YP_001782586.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001782587.1 identified by match to protein family HMM PF01230 YP_001782588.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_001782589.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001782590.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001782591.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001782592.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001782593.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_001782594.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001782595.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001782596.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001782598.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867 YP_001782599.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_001782600.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001782601.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_001782602.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360 YP_001782605.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690 YP_001782606.1 identified by match to protein family HMM PF07556 YP_001782607.1 identified by Glimmer3 YP_001782608.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475 YP_001782609.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_001782610.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476 YP_001782611.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_001782612.1 identified by match to protein family HMM PF00768 YP_001782613.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_001782614.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_001782615.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_001782616.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488 YP_001782617.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_001782618.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_001782619.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001782620.1 involved in the peptidyltransferase reaction during translation YP_001782621.1 identified by match to protein family HMM PF04327 YP_001782622.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_001782623.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_001782625.1 identified by match to protein family HMM PF04055 YP_001782626.1 identified by match to protein family HMM PF02163 YP_001782627.1 identified by match to protein family HMM PF01551 YP_001782628.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_001782629.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_001782630.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_001782631.1 blocks the formation of polar Z-ring septums YP_001782632.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001782633.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426 YP_001782634.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001782635.1 functions in MreBCD complex in some organisms YP_001782636.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001782637.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001782641.1 identified by match to protein family HMM PF02567 YP_001782642.1 identified by match to protein family HMM PF01842 YP_001782643.1 identified by match to protein family HMM PF01464 YP_001782644.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001782645.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_001782646.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001782647.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_001782656.1 identified by Glimmer3 YP_001782660.1 identified by match to protein family HMM PF00656 YP_001782663.1 identified by Glimmer3 YP_001782672.1 identified by Glimmer3 YP_001782676.1 identified by match to protein family HMM TIGR01714 YP_001782678.1 identified by match to protein family HMM PF01381 YP_001782679.1 identified by match to protein family HMM PF01381 YP_001782680.1 identified by Glimmer3 YP_001782681.1 identified by match to protein family HMM PF03062 YP_001782682.1 identified by Glimmer3 YP_001782683.1 identified by match to protein family HMM PF00269 YP_001782684.1 identified by Glimmer3 YP_001782685.1 identified by Glimmer3 YP_001782686.1 identified by Glimmer3 YP_001782687.1 identified by Glimmer3 YP_001782688.1 identified by match to protein family HMM PF04246 YP_001782689.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001782690.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001782691.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001782692.1 identified by match to protein family HMM PF00753 YP_001782693.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001782694.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_001782695.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001782696.1 identified by match to protein family HMM PF01368 YP_001782697.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001782698.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001782699.1 identified by match to protein family HMM PF04055 YP_001782700.1 identified by Glimmer3 YP_001782702.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_001782703.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_001782704.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001782705.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001782706.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001782708.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_001782709.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_001782710.1 identified by match to protein family HMM PF03130 YP_001782711.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001782712.1 identified by match to protein family HMM PF01909 YP_001782714.1 identified by match to protein family HMM PF00301 YP_001782715.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156 YP_001782716.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_001782717.1 identified by match to protein family HMM TIGR02832 YP_001782718.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001782719.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_001782720.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_001782721.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_001782722.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore. YP_001782723.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_001782724.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886 YP_001782726.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884 YP_001782727.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_001782728.1 identified by match to protein family HMM PF02397 YP_001782729.1 identified by match to protein family HMM PF01943 YP_001782730.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_001782731.1 identified by match to protein family HMM PF00534 YP_001782732.1 identified by match to protein family HMM PF00534 YP_001782733.1 identified by match to protein family HMM PF04932 YP_001782734.1 identified by match to protein family HMM PF00534 YP_001782735.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_001782736.1 identified by match to protein family HMM PF00534 YP_001782737.1 identified by Glimmer3 YP_001782739.1 identified by match to protein family HMM PF00560 YP_001782740.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943 YP_001782741.1 identified by match to protein family HMM PF00132 YP_001782742.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001782743.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_001782744.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001782745.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07495 YP_001782746.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07495 YP_001782747.1 identified by match to protein family HMM PF01832; match to protein family HMM PF07495 YP_001782748.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001782749.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001782750.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001782751.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001782752.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; match to protein family HMM PF05889 YP_001782753.1 identified by Glimmer3 YP_001782754.1 identified by match to protein family HMM PF01515 YP_001782755.1 identified by match to protein family HMM PF01070; match to protein family HMM PF01180 YP_001782756.1 identified by match to protein family HMM PF04463 YP_001782757.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_001782758.1 identified by match to protein family HMM PF01136 YP_001782760.1 identified by Glimmer3 YP_001782761.1 identified by Glimmer3 YP_001782763.1 identified by match to protein family HMM PF05164 YP_001782764.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001782765.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001782766.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_001782767.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_001782768.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_001782769.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001782770.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_001782771.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_001782772.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001782773.1 identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834 YP_001782776.1 identified by match to protein family HMM PF00005 YP_001782777.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_001782778.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001782780.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001782781.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001782782.1 identified by match to protein family HMM PF00528 YP_001782783.1 identified by match to protein family HMM PF00528 YP_001782784.1 identified by match to protein family HMM PF00496 YP_001782785.1 identified by Glimmer3 YP_001782786.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_001782787.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001782788.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001782789.1 identified by match to protein family HMM PF00155 YP_001782790.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503 YP_001782791.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001782793.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764 YP_001782797.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_001782798.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001782799.1 identified by match to protein family HMM PF00583 YP_001782800.1 identified by match to protein family HMM PF00082 YP_001782801.1 identified by Glimmer3 YP_001782803.1 identified by match to protein family HMM PF04055 YP_001782804.1 identified by Glimmer3 YP_001782805.1 identified by match to protein family HMM PF00005 YP_001782806.1 identified by match to protein family HMM PF00005 YP_001782807.1 identified by match to protein family HMM PF02687 YP_001782808.1 identified by match to protein family HMM PF09084 YP_001782809.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001782810.1 identified by match to protein family HMM PF00005 YP_001782811.1 identified by match to protein family HMM PF00528 YP_001782812.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720 YP_001782813.1 identified by match to protein family HMM PF01841 YP_001782814.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_001782815.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001782816.1 identified by match to protein family HMM PF06177 YP_001782817.1 identified by match to protein family HMM PF01613 YP_001782818.1 identified by match to protein family HMM PF01471; match to protein family HMM PF03734 YP_001782820.1 identified by match to protein family HMM PF06865 YP_001782821.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_001782822.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_001782823.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001782824.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001782825.1 identified by match to protein family HMM PF00533 YP_001782826.1 identified by Glimmer3 YP_001782827.1 identified by match to protein family HMM PF00092 YP_001782828.1 identified by match to protein family HMM PF07728 YP_001782831.1 identified by match to protein family HMM PF00037 YP_001782834.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001782835.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001782836.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001782837.1 identified by match to protein family HMM PF01012 YP_001782838.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001782839.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_001782840.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001782841.1 identified by match to protein family HMM PF00378 YP_001782842.1 identified by Glimmer3 YP_001782843.1 identified by match to protein family HMM PF01541 YP_001782844.1 identified by match to protein family HMM PF00860 YP_001782845.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001782846.1 identified by Glimmer3 YP_001782847.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001782848.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001782850.1 identified by match to protein family HMM PF03009 YP_001782851.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001782852.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001782853.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_001782854.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_001782856.1 identified by match to protein family HMM TIGR00731 YP_001782858.1 identified by match to protein family HMM PF01475 YP_001782859.1 identified by match to protein family HMM PF01547 YP_001782861.1 identified by match to protein family HMM PF08279 YP_001782863.1 identified by Glimmer3 YP_001782864.1 identified by Glimmer3 YP_001782865.1 identified by match to protein family HMM PF02517 YP_001782866.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001782867.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_001782868.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902 YP_001782869.1 binds and unfolds substrates as part of the ClpXP protease YP_001782870.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001782871.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001782872.1 identified by match to protein family HMM PF01261 YP_001782874.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001782875.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_001782876.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_001782877.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001782878.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857 YP_001782879.1 involved in the allosteric regulation of aspartate carbamoyltransferase YP_001782880.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001782881.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001782883.1 identified by match to protein family HMM PF06050 YP_001782884.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001782885.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001782888.1 identified by match to protein family HMM PF00496 YP_001782889.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001782890.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001782891.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001782892.1 identified by match to protein family HMM PF00375 YP_001782894.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_001782895.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_001782896.1 identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531 YP_001782897.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001782898.1 identified by match to protein family HMM PF01464 YP_001782899.1 identified by match to protein family HMM PF07495 YP_001782900.1 identified by Glimmer3 YP_001782901.1 identified by match to protein family HMM PF02639 YP_001782902.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001782904.1 identified by match to protein family HMM PF00440 YP_001782905.1 identified by match to protein family HMM PF00583 YP_001782906.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001782907.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001782909.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001782910.1 identified by match to protein family HMM PF01012 YP_001782911.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001782912.1 identified by match to protein family HMM PF06050 YP_001782913.1 identified by match to protein family HMM PF06050 YP_001782914.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001782915.1 identified by match to protein family HMM PF02515 YP_001782916.1 identified by match to protein family HMM PF00501 YP_001782917.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001782918.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001782919.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001782920.1 identified by match to protein family HMM PF01171 YP_001782921.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001782922.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001782923.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_001782924.1 identified by match to protein family HMM PF09335 YP_001782925.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_001782926.1 identified by match to protein family HMM PF00730; match to protein family HMM PF07934 YP_001782927.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001782928.1 identified by match to protein family HMM PF00175 YP_001782929.1 modulates transcription in response to the NADH/NAD(+) redox state YP_001782930.1 identified by match to protein family HMM PF00005 YP_001782931.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_001782932.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694 YP_001782933.1 identified by match to protein family HMM PF02554 YP_001782934.1 identified by match to protein family HMM PF05193; match to protein family HMM PF08367 YP_001782935.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_001782936.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001782937.1 identified by match to protein family HMM PF05866 YP_001782938.1 identified by Glimmer3 YP_001782939.1 identified by match to protein family HMM PF07992 YP_001782942.1 identified by match to protein family HMM PF01297 YP_001782943.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001782944.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_001782945.1 identified by match to protein family HMM PF00814 YP_001782946.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_001782947.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001782949.1 identified by match to protein family HMM PF04326 YP_001782951.1 identified by Glimmer3 YP_001782952.1 identified by match to protein family HMM PF01569 YP_001782953.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503 YP_001782954.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001782955.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001782956.1 identified by Glimmer3 YP_001782957.1 identified by match to protein family HMM PF01880; match to protein family HMM PF06397; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332 YP_001782959.1 identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205 YP_001782960.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_001782961.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657 YP_001782962.1 identified by Glimmer3 YP_001782963.1 catalyzes the removal of amino acids from the N termini of peptides YP_001782964.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001782967.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_001782968.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_001782969.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001782970.1 identified by match to protein family HMM PF01541 YP_001782971.1 identified by Glimmer3 YP_001782972.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 YP_001782973.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001782974.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001782976.1 identified by match to protein family HMM PF00005 YP_001782979.1 identified by match to protein family HMM PF05913 YP_001782980.1 identified by match to protein family HMM PF01869 YP_001782981.1 identified by match to protein family HMM PF02255 YP_001782982.1 identified by match to protein family HMM PF02302 YP_001782983.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728 YP_001782984.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_001782985.1 identified by match to protein family HMM PF02056 YP_001782986.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001782987.1 identified by match to protein family HMM PF00589 YP_001782988.1 identified by match to protein family HMM PF02675; match to protein family HMM TIGR03330 YP_001782991.1 identified by Glimmer3 YP_001782992.1 identified by Glimmer3 YP_001782994.1 identified by match to protein family HMM PF05368 YP_001782995.1 identified by match to protein family HMM PF00248 YP_001782996.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_001782997.1 identified by match to protein family HMM PF00376 YP_001782998.1 identified by match to protein family HMM PF00383 YP_001782999.1 identified by match to protein family HMM PF01370 YP_001783000.1 identified by match to protein family HMM PF01872 YP_001783002.1 identified by match to protein family HMM PF04657 YP_001783003.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001783004.1 identified by match to protein family HMM PF00583 YP_001783005.1 identified by match to protein family HMM PF01170; match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_001783007.1 identified by Glimmer3 YP_001783008.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_001783009.1 identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_001783010.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_001783011.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_001783012.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_001783013.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_001783014.1 identified by match to protein family HMM PF03668 YP_001783015.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001783016.1 identified by match to protein family HMM PF02811 YP_001783017.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001783018.1 identified by match to protein family HMM PF04307 YP_001783019.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966 YP_001783020.1 identified by match to protein family HMM PF00905 YP_001783021.1 identified by match to protein family HMM PF01098 YP_001783022.1 identified by match to protein family HMM PF00498 YP_001783023.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_001783024.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001783026.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_001783027.1 identified by match to protein family HMM PF02687 YP_001783028.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_001783029.1 identified by match to protein family HMM PF02588 YP_001783030.1 identified by Glimmer3 YP_001783031.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001783032.1 identified by match to protein family HMM PF00456 YP_001783033.1 identified by match to protein family HMM PF02452 YP_001783035.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001783037.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_001783038.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 YP_001783040.1 identified by match to protein family HMM PF03553 YP_001783041.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_001783043.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001783044.1 identified by match to protein family HMM PF00375 YP_001783045.1 identified by match to protein family HMM PF01569 YP_001783046.1 identified by match to protein family HMM PF01569 YP_001783047.1 identified by match to protein family HMM PF09335 YP_001783049.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_001783050.1 identified by match to protein family HMM PF00923 YP_001783051.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001783052.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate YP_001783053.1 identified by match to protein family HMM PF03829 YP_001783054.1 identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825 YP_001783055.1 identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821 YP_001783056.1 identified by match to protein family HMM PF06923 YP_001783057.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001783058.1 identified by match to protein family HMM PF04198 YP_001783059.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001783060.1 identified by match to protein family HMM PF01558 YP_001783061.1 identified by match to protein family HMM PF02775 YP_001783062.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_001783063.1 identified by match to protein family HMM PF00037 YP_001783065.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_001783066.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate YP_001783067.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_001783069.1 identified by match to protein family HMM PF07949 YP_001783070.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_001783071.1 identified by match to protein family HMM PF07486 YP_001783072.1 identified by Glimmer3 YP_001783073.1 identified by match to protein family HMM PF01134; match to protein family HMM PF07992 YP_001783074.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001783075.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975 YP_001783076.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001783078.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_001783079.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_001783080.1 identified by match to protein family HMM PF00515 YP_001783081.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723 YP_001783082.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid YP_001783083.1 identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883 YP_001783084.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_001783085.1 forms a direct contact with the tRNA during translation YP_001783086.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001783087.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001783088.1 identified by match to protein family HMM PF02361 YP_001783089.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene YP_001783090.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene YP_001783091.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001783092.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001783093.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001783094.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001783095.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001783096.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001783097.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001783099.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_001783100.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001783101.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001783102.1 late assembly protein YP_001783103.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001783104.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001783105.1 binds 5S rRNA along with protein L5 and L25 YP_001783106.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001783107.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001783108.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_001783109.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001783110.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001783111.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001783112.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001783113.1 one of the stabilizing components for the large ribosomal subunit YP_001783114.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001783115.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001783116.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001783117.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001783118.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001783119.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001783120.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001783121.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001783122.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001783123.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001783124.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001783125.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001783126.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001783127.1 identified by match to protein family HMM PF01248 YP_001783128.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001783129.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001783130.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001783131.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001783132.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001783133.1 binds directly to 23S ribosomal RNA YP_001783134.1 Modulates Rho-dependent transcription termination YP_001783135.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001783136.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_001783137.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001783138.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001783139.1 identified by match to protein family HMM PF05991 YP_001783140.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_001783141.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_001783142.1 identified by match to protein family HMM PF00636 YP_001783143.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001783144.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127 YP_001783145.1 identified by match to protein family HMM PF03129; match to protein family HMM PF04073 YP_001783146.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_001783147.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938 YP_001783149.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_001783150.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001783151.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001783152.1 identified by match to protein family HMM PF00217 YP_001783153.1 identified by match to protein family HMM PF02151 YP_001783154.1 identified by match to protein family HMM PF05848 YP_001783156.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001783157.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001783158.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001783159.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001783160.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001783162.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_001783163.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001783164.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_001783165.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_001783166.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_001783167.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_001783168.1 identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865 YP_001783169.1 identified by match to protein family HMM PF00575 YP_001783170.1 identified by match to protein family HMM PF04977 YP_001783171.1 identified by match to protein family HMM TIGR02893 YP_001783172.1 identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892 YP_001783173.1 identified by match to protein family HMM PF01479 YP_001783174.1 identified by match to protein family HMM PF00216 YP_001783175.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_001783176.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001783177.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851 YP_001783178.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_001783179.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_001783180.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001783181.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_001783182.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001783183.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001783184.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001783185.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_001783186.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_001783187.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_001783188.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001783189.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_001783190.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001783192.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate YP_001783193.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_001783196.1 identified by match to protein family HMM PF04055 YP_001783197.1 identified by match to protein family HMM PF00015; match to protein family HMM PF07700 YP_001783198.1 identified by match to protein family HMM PF01381 YP_001783200.1 identified by match to protein family HMM PF00160 YP_001783201.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001783202.1 identified by match to protein family HMM PF00120 YP_001783204.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001783205.1 identified by match to protein family HMM PF00753 YP_001783207.1 identified by match to protein family HMM PF02810 YP_001783208.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001783209.1 identified by match to protein family HMM PF07690 YP_001783210.1 identified by match to protein family HMM PF03358 YP_001783211.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02796 YP_001783212.1 identified by match to protein family HMM PF00165 YP_001783213.1 identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500 YP_001783214.1 identified by match to protein family HMM PF00881 YP_001783216.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055 YP_001783218.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_001783219.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_001783220.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_001783221.1 identified by match to protein family HMM PF00474 YP_001783222.1 identified by match to protein family HMM PF00534 YP_001783223.1 identified by match to protein family HMM PF02811 YP_001783224.1 identified by match to protein family HMM PF08761 YP_001783225.1 identified by match to protein family HMM PF04657 YP_001783226.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001783227.1 identified by match to protein family HMM PF00082 YP_001783228.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001783229.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001783230.1 identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513 YP_001783231.1 identified by match to protein family HMM TIGR00515 YP_001783232.1 identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514 YP_001783233.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001783234.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_001783235.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001783236.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001783237.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001783238.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151 YP_001783239.1 identified by match to protein family HMM PF00550 YP_001783240.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747 YP_001783241.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_001783242.1 identified by match to protein family HMM PF03060 YP_001783243.1 identified by match to protein family HMM PF01551 YP_001783244.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_001783245.1 acts to load the DnaB helicase onto the initiation site during DNA replication YP_001783246.1 identified by match to protein family HMM PF03618 YP_001783247.1 identified by match to protein family HMM PF02629 YP_001783248.1 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_001783249.1 identified by match to protein family HMM PF01643 YP_001783251.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001783252.1 identified by match to protein family HMM PF07992 YP_001783253.1 identified by Glimmer3 YP_001783254.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001783255.1 unwinds double stranded DNA YP_001783256.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02903 YP_001783257.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001783258.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_001783261.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001783262.1 identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621 YP_001783263.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001783264.1 identified by match to protein family HMM PF06050 YP_001783265.1 identified by match to protein family HMM PF06107 YP_001783266.1 identified by match to protein family HMM PF00924 YP_001783268.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977 YP_001783269.1 identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872 YP_001783270.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_001783271.1 identified by Glimmer3 YP_001783273.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001783274.1 identified by match to protein family HMM PF01656 YP_001783275.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001783276.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001783277.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001783278.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001783279.1 identified by match to protein family HMM PF01424 YP_001783280.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_001783281.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_001783282.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_001783283.1 in Escherichia coli transcription of this gene is enhanced by polyamines