-- dump date   	20140619_034209
-- class       	Genbank::misc_feature
-- table       	misc_feature_note
-- id	note
471473000001	Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS_aspartate_rich; cd04823
471473000002	dimer interface [polypeptide binding]; other site
471473000003	active site
471473000004	aspartate-rich active site metal binding site; other site
471473000005	allosteric magnesium binding site [ion binding]; other site
471473000006	Schiff base residues; other site
471473000007	PS00169 Delta-aminolevulinic acid dehydratase active site
471473000008	NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; Region: nqrA; TIGR01936
471473000009	Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl; Region: Biotinyl_lipoyl_domains; cl11404
471473000010	lipoyl-biotinyl attachment site [posttranslational modification]; other site
471473000011	NQRA C-terminal domain; Region: NQRA_SLBB; pfam11973
471473000012	Putative bacteriophage terminase small subunit; Region: Phage_term_sma; pfam07141
471473000013	transcript cleavage factor/unknown domain fusion protein; Validated; Region: PRK06330
471473000014	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
471473000015	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
471473000016	aromatic amino acid aminotransferase; Provisional; Region: PRK09257
471473000017	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
471473000018	pyridoxal 5'-phosphate binding site [chemical binding]; other site
471473000019	homodimer interface [polypeptide binding]; other site
471473000020	catalytic residue [active]
471473000021	PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site
471473000022	rod shape-determining protein MreC; Provisional; Region: PRK14872
471473000023	rod shape-determining protein MreC; Region: MreC; pfam04085
471473000024	1 probable transmembrane helix predicted for CTL0006 by TMHMM2.0 at aa 13-30
471473000025	exodeoxyribonuclease V, beta subunit; Region: recB; TIGR00609
471473000026	Part of AAA domain; Region: AAA_19; pfam13245
471473000027	Family description; Region: UvrD_C_2; pfam13538
471473000028	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000029	Exonuclease V gamma subunit [DNA replication, recombination, and repair]; Region: RecC; COG1330
471473000030	lysophospholipid transporter LplT; Provisional; Region: PRK11195
471473000031	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
471473000032	putative substrate translocation pore; other site
471473000033	12 probable transmembrane helices predicted for CTL0009 by TMHMM2.0 at aa 13-35, 48-70, 77-99,105-127,140-162, 172-194, 227-249, 264-286, 291-313,318-340,353-375 and 385-404
471473000034	1 probable transmembrane helix predicted for CTL0010 by TMHMM2.0 at aa 182-204
471473000035	DNA topoisomerase I/SWI domain fusion protein; Validated; Region: PRK06319
471473000036	TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I.   Type IA DNA topoisomerases remove (relax) negative supercoils in the...; Region: TOPRIM_TopoIA_TopoI; cd03363
471473000037	active site
471473000038	interdomain interaction site; other site
471473000039	putative metal-binding site [ion binding]; other site
471473000040	nucleotide binding site [chemical binding]; other site
471473000041	DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA...; Region: TOP1Ac; cd00186
471473000042	domain I; other site
471473000043	DNA binding groove [nucleotide binding]
471473000044	phosphate binding site [ion binding]; other site
471473000045	domain II; other site
471473000046	domain III; other site
471473000047	nucleotide binding site [chemical binding]; other site
471473000048	catalytic site [active]
471473000049	domain IV; other site
471473000050	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
471473000051	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
471473000052	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
471473000053	SWI complex, BAF60b domains; Region: SWIB; smart00151
471473000054	PS00396 Prokaryotic DNA topoisomerase I active site
471473000055	putative TIM-barrel protein, nifR3 family; Region: nifR3_yhdG; TIGR00737
471473000056	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
471473000057	FMN binding site [chemical binding]; other site
471473000058	active site
471473000059	catalytic residues [active]
471473000060	substrate binding site [chemical binding]; other site
471473000061	PS01136 Uncharacterized protein family UPF0034 signature
471473000062	Predicted integral membrane protein [Function unknown]; Region: COG0762
471473000063	2 probable transmembrane helices predicted for CTL0013 by TMHMM2.0 at aa 4-26 and 64-86
471473000064	1 probable transmembrane helix predicted for CTL0015 by TMHMM2.0 at aa 5-27
471473000065	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
471473000066	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
471473000067	5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]; Region: COG0212
471473000068	5-formyltetrahydrofolate cyclo-ligase family; Region: 5-FTHF_cyc-lig; pfam01812
471473000069	recombinase A; Provisional; Region: recA; PRK09354
471473000070	RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange; Region: recA; cd00983
471473000071	hexamer interface [polypeptide binding]; other site
471473000072	Walker A motif; other site
471473000073	ATP binding site [chemical binding]; other site
471473000074	Walker B motif; other site
471473000075	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000076	PS00321 recA signature
471473000077	Protein of unknown function (DUF1347); Region: DUF1347; pfam07079
471473000078	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473000079	exodeoxyribonuclease V, alpha subunit; Region: recD; TIGR01447
471473000080	AAA domain; Region: AAA_30; pfam13604
471473000081	Family description; Region: UvrD_C_2; pfam13538
471473000082	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000083	ABC-type (unclassified) transport system, ATPase component [General function prediction only]; Region: YhbG; COG1137
471473000084	ATP-binding cassette component of YhbG transport system; Region: ABC_YhbG; cd03218
471473000085	Walker A/P-loop; other site
471473000086	ATP binding site [chemical binding]; other site
471473000087	Q-loop/lid; other site
471473000088	ABC transporter signature motif; other site
471473000089	Walker B; other site
471473000090	D-loop; other site
471473000091	H-loop/switch region; other site
471473000092	PS00211 ABC transporters family signature
471473000093	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000094	Protein of unknown function (DUF1137); Region: DUF1137; pfam06587
471473000095	1 probable transmembrane helix predicted for CTL0023 by TMHMM2.0 at aa 5-27
471473000096	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473000097	3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]; Region: KdsA; COG2877
471473000098	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
471473000099	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
471473000100	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
471473000101	RNA binding surface [nucleotide binding]; other site
471473000102	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
471473000103	active site
471473000104	hypothetical protein; Provisional; Region: PRK01064
471473000105	Predicted RNA-binding protein (contains KH domain) [General function prediction only]; Region: COG1837
471473000106	DNA topoisomerase IV subunit A; Provisional; Region: PRK09630
471473000107	DNA Topoisomerase IV; Region: TOP4c; smart00434
471473000108	CAP-like domain; other site
471473000109	active site
471473000110	DNA topoisomerase IV subunit B; Reviewed; Region: PRK05559
471473000111	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
471473000112	ATP binding site [chemical binding]; other site
471473000113	Mg2+ binding site [ion binding]; other site
471473000114	G-X-G motif; other site
471473000115	MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second...; Region: TopoII_MutL_Trans; cl02783
471473000116	ATP binding site [chemical binding]; other site
471473000117	TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands...; Region: TOPRIM_TopoIIA_like; cd01030
471473000118	active site
471473000119	putative metal-binding site [ion binding]; other site
471473000120	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
471473000121	glutamyl-tRNA reductase; Validated; Region: hemA; PRK00676
471473000122	NAD(P) binding domain of amino acid dehydrogenase-like proteins; Region: NAD_bind_amino_acid_DH; cl17226
471473000123	NAD(P) binding pocket [chemical binding]; other site
471473000124	HMMPfam hit to PF05201, Glutamyl-tRNAGlu reductase,N-terminal domai, score 3.9e-54
471473000125	Tir chaperone protein (CesT) family; Region: CesT; pfam05932
471473000126	HMMPfam hit to PF05932, Tir chaperone protein (CesT), score 8.1e-35
471473000127	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
471473000128	phosphopeptide binding site; other site
471473000129	MARCKS family; Region: MARCKS; pfam02063
471473000130	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
471473000131	FOG: FHA domain [Signal transduction mechanisms]; Region: COG1716
471473000132	phosphopeptide binding site; other site
471473000133	FOG: FHA domain [Signal transduction mechanisms]; Region: COG1716
471473000134	HMMPfam hit to PF00498, FHA domain, score 6.6e-11
471473000135	HMMPfam hit to PF00498, FHA domain, score 9e-11
471473000136	1 probable transmembrane helix predicted for CTL0033 by TMHMM2.0 at aa 530-552
471473000137	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 3.3e-10
471473000138	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
471473000139	binding surface
471473000140	Tetratricopeptide repeat; Region: TPR_16; pfam13432
471473000141	TPR motif; other site
471473000142	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.0037
471473000143	type III secretion system ATPase; Provisional; Region: PRK06315
471473000144	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
471473000145	Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136
471473000146	Walker A motif/ATP binding site; other site
471473000147	Walker B motif; other site
471473000148	HMMPfam hit to PF02874, ATP synthase alpha/beta family, beta-ba, score 9.6e-07
471473000149	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleot, score 9.1e-125
471473000150	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000151	PS00152 ATP synthase alpha and beta subunits signature
471473000152	type III secretion system protein; Validated; Region: PRK05933
471473000153	Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliN; COG1886
471473000154	HMMPfam hit to PF01052, Surface presentation of antigens (SPOA) prot, score 0.00025
471473000155	Serine/Threonine protein kinases, catalytic domain; Region: S_TKc; smart00220
471473000156	Catalytic domain of Protein Kinases; Region: PKc; cd00180
471473000157	active site
471473000158	ATP binding site [chemical binding]; other site
471473000159	substrate binding site [chemical binding]; other site
471473000160	activation loop (A-loop); other site
471473000161	HMMPfam hit to PF00069, Protein kinase domain,score 6.6e-29
471473000162	PS00108 Serine/Threonine protein kinases active-site signature
471473000163	Type II secretory pathway, component PulD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulD; COG1450
471473000164	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
471473000165	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
471473000166	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
471473000167	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 2.5e-09
471473000168	PS00591 Glycosyl hydrolases family 10 active site
471473000169	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 2.8e-09
471473000170	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 3.2e-09
471473000171	HMMPfam hit to PF00263, Bacterial type II and III secretion system, score 2.8e-72
471473000172	Arginine kinase [Amino acid transport and metabolism]; Region: COG3869
471473000173	Phosphagen (guanidino) kinases found in bacteria; Region: bacterial_phosphagen_kinase; cd07930
471473000174	ADP binding site [chemical binding]; other site
471473000175	phosphagen binding site; other site
471473000176	substrate specificity loop; other site
471473000177	HMMPfam hit to PF00217, ATP:guanido phosphotransferase, C-term, score 9.2e-05
471473000178	Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]; Region: COG3880
471473000179	UvrB/uvrC motif; Region: UVR; pfam02151
471473000180	HMMPfam hit to PF02151, UvrB/uvrC motif, score 4.9e-09
471473000181	ribosome recycling factor; Reviewed; Region: frr; PRK00083
471473000182	Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.  Thus ribosomes are "recycled" and ready for another...; Region: RRF; cd00520
471473000183	hinge region; other site
471473000184	HMMPfam hit to PF01765, Ribosome recycling factor,score 4.1e-85
471473000185	UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and...; Region: AAK_UMPK-PyrH-Ec; cd04254
471473000186	putative nucleotide binding site [chemical binding]; other site
471473000187	uridine monophosphate binding site [chemical binding]; other site
471473000188	homohexameric interface [polypeptide binding]; other site
471473000189	HMMPfam hit to PF00696, Amino acid kinase family,score 2.3e-51
471473000190	Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]; Region: Tsf; COG0264
471473000191	Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been...; Region: UBA; cl00153
471473000192	Elongation factor TS; Region: EF_TS; pfam00889
471473000193	Elongation factor TS; Region: EF_TS; pfam00889
471473000194	HMMPfam hit to PF00889, Elongation factor TS, score 9.6e-105
471473000195	PS01127 Elongation factor Ts signature 2
471473000196	HMMPfam hit to PF00627, UBA/TS-N domain, score 9.2e-09
471473000197	PS01126 Elongation factor Ts signature 1
471473000198	Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425
471473000199	rRNA interaction site [nucleotide binding]; other site
471473000200	S8 interaction site; other site
471473000201	putative laminin-1 binding site; other site
471473000202	HMMPfam hit to PF00318, Ribosomal protein S2, score 1.2e-84
471473000203	PS00963 Ribosomal protein S2 signature 2
471473000204	PS00962 Ribosomal protein S2 signature 1
471473000205	Chlamydia major outer membrane protein; Region: Chlam_OMP; pfam01308
471473000206	HMMPfam hit to PF01308, Chlamydia major outer membrane protein, score 8.2e-268
471473000207	Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]; Region: FtsI; COG0768
471473000208	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
471473000209	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
471473000210	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
471473000211	1 probable transmembrane helix predicted for CTL0051 by TMHMM2.0 at aa 17-39
471473000212	HMMPfam hit to PF03717, Penicillin-binding Protein dimerisatio, score 3e-52
471473000213	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 4.6e-06
471473000214	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
471473000215	TPR motif; other site
471473000216	Tetratricopeptide repeat; Region: TPR_16; pfam13432
471473000217	binding surface
471473000218	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
471473000219	binding surface
471473000220	TPR motif; other site
471473000221	TPR repeat; Region: TPR_11; pfam13414
471473000222	TPR repeat; Region: TPR_11; pfam13414
471473000223	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
471473000224	binding surface
471473000225	TPR motif; other site
471473000226	TPR repeat; Region: TPR_11; pfam13414
471473000227	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.0015
471473000228	HMMPfam hit to PF00515, Tetratricopeptide repeat,score 7.9e-07
471473000229	HMMPfam hit to PF00515, Tetratricopeptide repeat,score 0.059
471473000230	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.00011
471473000231	HMMPfam hit to PF00515, Tetratricopeptide repeat,score 3e-06
471473000232	HMMPfam hit to PF00515, Tetratricopeptide repeat,score 2.5e-05
471473000233	cysteine desulfurase activator complex subunit SufB; Provisional; Region: PRK11814
471473000234	putative ABC transporter; Region: ycf24; CHL00085
471473000235	HMMPfam hit to PF01458, Uncharacterized protein family (UPF0051), score 6.4e-117
471473000236	FeS assembly ATPase SufC; Region: sufC; TIGR01978
471473000237	ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Region: ABC_FeS_Assembly; cd03217
471473000238	Walker A/P-loop; other site
471473000239	ATP binding site [chemical binding]; other site
471473000240	Q-loop/lid; other site
471473000241	ABC transporter signature motif; other site
471473000242	Walker B; other site
471473000243	D-loop; other site
471473000244	H-loop/switch region; other site
471473000245	HMMPfam hit to PF00005, ABC transporter, score 6.5e-25
471473000246	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000247	Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]; Region: SufB; COG0719
471473000248	FeS assembly protein SufD; Region: sufD; TIGR01981
471473000249	HMMPfam hit to PF01458, Uncharacterized protein family (UPF0051), score 1.3e-10
471473000250	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
471473000251	Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS...; Region: SufS_like; cd06453
471473000252	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
471473000253	catalytic residue [active]
471473000254	HMMPfam hit to PF00266, Aminotransferase class-V,score 3.2e-197
471473000255	HMMPfam hit to PF01212, Beta-eliminating lyase,score 0.0031
471473000256	PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site
471473000257	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
471473000258	ParB-like nuclease domain; Region: ParBc; pfam02195
471473000259	KorB domain; Region: KorB; pfam08535
471473000260	HMMPfam hit to PF02195, ParB-like nuclease domain,score 9.8e-36
471473000261	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
471473000262	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
471473000263	Walker A/P-loop; other site
471473000264	ATP binding site [chemical binding]; other site
471473000265	Q-loop/lid; other site
471473000266	ABC transporter signature motif; other site
471473000267	Walker B; other site
471473000268	D-loop; other site
471473000269	H-loop/switch region; other site
471473000270	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
471473000271	HMMPfam hit to PF00005, ABC transporter, score 6.5e-46
471473000272	PS00211 ABC transporters family signature
471473000273	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000274	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444
471473000275	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
471473000276	Walker A/P-loop; other site
471473000277	ATP binding site [chemical binding]; other site
471473000278	Q-loop/lid; other site
471473000279	ABC transporter signature motif; other site
471473000280	Walker B; other site
471473000281	D-loop; other site
471473000282	H-loop/switch region; other site
471473000283	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
471473000284	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter, C-termi, score 5.8e-21
471473000285	HMMPfam hit to PF00005, ABC transporter, score 2.2e-50
471473000286	PS00211 ABC transporters family signature
471473000287	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000288	Protein of unknown function DUF47; Region: PhoU_div; pfam01865
471473000289	HMMPfam hit to PF01865, Protein of unknown function DUF47, score 3.3e-111
471473000290	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
471473000291	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
471473000292	10 probable transmembrane helices predicted for CTL0061 by TMHMM2.0 at aa 2-21, 36-58, 101-123,138-160,181-203, 208-230, 260-282, 310-332, 362-384 and 399-421
471473000293	HMMPfam hit to PF01384, Phosphate transporter family, score 8.1e-191
471473000294	PS00211 ABC transporters family signature
471473000295	Phosphoglycerate kinase; Region: PGK; pfam00162
471473000296	Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level...; Region: Phosphoglycerate_kinase; cd00318
471473000297	substrate binding site [chemical binding]; other site
471473000298	hinge regions; other site
471473000299	ADP binding site [chemical binding]; other site
471473000300	catalytic site [active]
471473000301	HMMPfam hit to PF00162, Phosphoglycerate kinase,score 8.8e-182
471473000302	PS00111 Phosphoglycerate kinase signature
471473000303	Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]; Region: Nth; COG0177
471473000304	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
471473000305	minor groove reading motif; other site
471473000306	helix-hairpin-helix signature motif; other site
471473000307	substrate binding pocket [chemical binding]; other site
471473000308	active site
471473000309	HMMPfam hit to PF00730, HhH-GPD superfamily base excision DNA repair, score 8.2e-22
471473000310	HMMPfam hit to PF00633, Helix-hairpin-helix motif,score 2.1e-05
471473000311	Predicted GTPase [General function prediction only]; Region: ThdF; COG0486
471473000312	GTP-binding protein TrmE N-terminus; Region: TrmE_N; pfam10396
471473000313	trmE is a tRNA modification GTPase; Region: trmE; cd04164
471473000314	G1 box; other site
471473000315	GTP/Mg2+ binding site [chemical binding]; other site
471473000316	Switch I region; other site
471473000317	G2 box; other site
471473000318	Switch II region; other site
471473000319	G3 box; other site
471473000320	G4 box; other site
471473000321	G5 box; other site
471473000322	Catalytic cysteine-containing C-terminus of GTPase, MnmE; Region: GTPase_Cys_C; pfam12631
471473000323	HMMPfam hit to PF01926, GTPase of unknown function,score 3e-41
471473000324	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000325	phosphatidylserine decarboxylase; Provisional; Region: PRK00723
471473000326	HMMPfam hit to PF02666, Phosphatidylserine decarboxylase, score 1e-113
471473000327	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
471473000328	binding surface
471473000329	TPR motif; other site
471473000330	1 probable transmembrane helix predicted for CTL0069 by TMHMM2.0 at aa 2-19
471473000331	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473000332	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.00073
471473000333	preprotein translocase subunit SecA; Reviewed; Region: secA; PRK12899
471473000334	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl17251
471473000335	ATP binding site [chemical binding]; other site
471473000336	putative Mg++ binding site [ion binding]; other site
471473000337	SecA preprotein cross-linking domain; Region: SecA_PP_bind; smart00958
471473000338	HMMPfam hit to PF07517, SecA DEAD-like domain,score 6.2e-162
471473000339	HMMPfam hit to PF01043, SecA preprotein cross-linking domain, score 4.5e-16
471473000340	PS01312 Protein secA signatures
471473000341	HMMPfam hit to PF07516, SecA Wing and Scaffold domain, score 8.5e-42
471473000342	Predicted GTPases [General function prediction only]; Region: COG1160
471473000343	EngA1 GTPase contains the first domain of EngA; Region: EngA1; cd01894
471473000344	G1 box; other site
471473000345	GTP/Mg2+ binding site [chemical binding]; other site
471473000346	Switch I region; other site
471473000347	G2 box; other site
471473000348	Switch II region; other site
471473000349	G3 box; other site
471473000350	G4 box; other site
471473000351	G5 box; other site
471473000352	EngA2 GTPase contains the second domain of EngA; Region: EngA2; cd01895
471473000353	G1 box; other site
471473000354	GTP/Mg2+ binding site [chemical binding]; other site
471473000355	Switch I region; other site
471473000356	G2 box; other site
471473000357	G3 box; other site
471473000358	Switch II region; other site
471473000359	G4 box; other site
471473000360	G5 box; other site
471473000361	HMMPfam hit to PF01926, GTPase of unknown function,score 8.5e-45
471473000362	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000363	HMMPfam hit to PF01926, GTPase of unknown function,score 4.3e-41
471473000364	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000365	tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]; Region: PcnB; COG0617
471473000366	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
471473000367	active site
471473000368	NTP binding site [chemical binding]; other site
471473000369	metal binding triad [ion binding]; metal-binding site
471473000370	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
471473000371	HMMPfam hit to PF01743, Poly A polymerase family,score 3.1e-78
471473000372	ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342
471473000373	ClpX C4-type zinc finger; Region: zf-C4_ClpX; smart00994
471473000374	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473000375	Walker A motif; other site
471473000376	ATP binding site [chemical binding]; other site
471473000377	Walker B motif; other site
471473000378	arginine finger; other site
471473000379	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
471473000380	HMMPfam hit to PF00004, ATPase family associated with various cell, score 1.3e-05
471473000381	HMMPfam hit to PF07724, ATPase family associated with various cell, score 1e-79
471473000382	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000383	HMMPfam hit to PF06689, ClpX C4-type zinc finger,score 1.6e-21
471473000384	Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: ClpP; COG0740
471473000385	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
471473000386	oligomer interface [polypeptide binding]; other site
471473000387	active site residues [active]
471473000388	HMMPfam hit to PF00574, Clp protease, score 1.7e-117
471473000389	PS00382 Endopeptidase Clp histidine active site
471473000390	PS00381 Endopeptidase Clp serine active site
471473000391	PS00225 Crystallins beta and gamma 'Greek key' motif signature
471473000392	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]; Region: Tig; COG0544
471473000393	Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698
471473000394	HMMPfam hit to PF05698, Bacterial trigger factor protein (TF) C-ter, score 6.1e-35
471473000395	HMMPfam hit to PF05697, Bacterial trigger factor protein (TF), score 1e-38
471473000396	Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]; Region: HepA; COG0553
471473000397	Bacterial SNF2 helicase associated; Region: SNF2_assoc; pfam08455
471473000398	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
471473000399	ATP binding site [chemical binding]; other site
471473000400	putative Mg++ binding site [ion binding]; other site
471473000401	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
471473000402	nucleotide binding region [chemical binding]; other site
471473000403	ATP-binding site [chemical binding]; other site
471473000404	HMMPfam hit to PF04434, SWIM zinc finger, score 3.8e-07
471473000405	HMMPfam hit to PF04851, Type III restriction enzyme,res subunit, score 1.7e-05
471473000406	HMMPfam hit to PF00176, SNF2 family N-terminal domain, score 5.5e-87
471473000407	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 1.2e-26
471473000408	rod shape-determining protein MreB; Provisional; Region: PRK13927
471473000409	MreB and similar proteins; Region: MreB_like; cd10225
471473000410	nucleotide binding site [chemical binding]; other site
471473000411	Mg binding site [ion binding]; other site
471473000412	putative protofilament interaction site [polypeptide binding]; other site
471473000413	RodZ interaction site [polypeptide binding]; other site
471473000414	HMMPfam hit to PF06723, MreB/Mbl protein, score 1.1e-229
471473000415	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000416	HMMPfam hit to PF02491, Cell division protein FtsA,score 0.00014
471473000417	Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and...; Region: PEPCK_GTP; cd00819
471473000418	active site
471473000419	substrate-binding site [chemical binding]; other site
471473000420	metal-binding site [ion binding]
471473000421	GTP binding site [chemical binding]; other site
471473000422	HMMPfam hit to PF00821, Phosphoenolpyruvate carboxykinase, score 0
471473000423	PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature
471473000424	PS00012 Phosphopantetheine attachment site
471473000425	Effector from type III secretion system; Region: Effector_1; pfam04518
471473000426	HMMPfam hit to PF04518, Protein of unknown function,DUF582, score 8.8e-200
471473000427	Effector from type III secretion system; Region: Effector_1; pfam04518
471473000428	HMMPfam hit to PF04518, Protein of unknown function,DUF582, score 2.5e-192
471473000429	Chlamydia major outer membrane protein; Region: Chlam_OMP; pfam01308
471473000430	Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Region: GpsA; COG0240
471473000431	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
471473000432	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Region: NAD_Gly3P_dh_C; pfam07479
471473000433	HMMPfam hit to PF07479, NAD-dependent glycerol-3-phosphate deh, score 5e-81
471473000434	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 1.1e-65
471473000435	UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]; Region: COG4284
471473000436	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
471473000437	active site
471473000438	HMMPfam hit to PF01704, UTP--glucose-1-phosphate uridylyltransferase, score 8.9e-08
471473000439	sensor histidine kinase DpiB; Provisional; Region: dpiB; PRK15053
471473000440	type III secretion system ATPase; Validated; Region: PRK05922
471473000441	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
471473000442	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
471473000443	Walker A motif; other site
471473000444	ATP binding site [chemical binding]; other site
471473000445	Walker B motif; other site
471473000446	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleot, score 5.2e-89
471473000447	PS00152 ATP synthase alpha and beta subunits signature
471473000448	HMMPfam hit to PF02874, ATP synthase alpha/beta family, beta-ba, score 0.00025
471473000449	type III secretion system protein; Validated; Region: PRK05934
471473000450	Secretory protein of YscJ/FliF family; Region: YscJ_FliF; cl01907
471473000451	1 probable transmembrane helix predicted for CTL0088 by TMHMM2.0 at aa 247-269
471473000452	NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Region: IscU; COG0822
471473000453	Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cl00528
471473000454	active site
471473000455	Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]; Region: COG0694
471473000456	HMMPfam hit to PF01106, NifU-like domain, score 9.3e-05
471473000457	HMMPfam hit to PF01592, NifU-like N terminal domain,score 1.3e-06
471473000458	Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]; Region: NifS; COG1104
471473000459	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
471473000460	catalytic residue [active]
471473000461	HMMPfam hit to PF00266, Aminotransferase class-V,score 4.5e-07
471473000462	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
471473000463	catalytic core [active]
471473000464	HMMPfam hit to PF00300, Phosphoglycerate mutase family, score 1.4e-38
471473000465	PS00175 Phosphoglycerate mutase family phosphohistidine signature
471473000466	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187
471473000467	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
471473000468	RNA binding surface [nucleotide binding]; other site
471473000469	Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi); Region: PseudoU_synth; cl00130
471473000470	active site
471473000471	PS00430 TonB-dependent receptor proteins signature 1
471473000472	HMMPfam hit to PF01479, S4 domain, score 2.8e-09
471473000473	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 1e-30
471473000474	PS01149 Rsu family of pseudouridine synthase signature
471473000475	biotin--protein ligase; Provisional; Region: PRK05935
471473000476	Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]; Region: BirA; COG0340
471473000477	HMMPfam hit to PF03099, Biotin/lipoate A/B protein ligase famil, score 2.1e-23
471473000478	Bacterial cell division membrane protein [Cell division and chromosome partitioning]; Region: FtsW; COG0772
471473000479	HMMPfam hit to PF01098, Cell cycle protein, score 2.2e-48
471473000480	8 probable transmembrane helices predicted for CTL0095 by TMHMM2.0 at aa 12-29, 77-99, 144-161,166-185,192-214, 279-301, 314-336 and 346-368
471473000481	PS00012 Phosphopantetheine attachment site
471473000482	PS00428 Cell cycle proteins ftsW / rodA / spoVE signature
471473000483	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; Region: ATPase-IB2_Cd; TIGR01512
471473000484	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
471473000485	Soluble P-type ATPase [General function prediction only]; Region: COG4087
471473000486	7 probable transmembrane helices predicted for CTL0096 by TMHMM2.0 at aa 46-65, 67-86, 106-128,267-289,304-326, 608-627 and 631-653
471473000487	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 3.1e-33
471473000488	PS01229 Hypothetical cof family signature 2
471473000489	PS00154 E1-E2 ATPases phosphorylation site
471473000490	HMMPfam hit to PF00122, E1-E2 ATPase, score 1.6e-50
471473000491	CCC1-related protein family; Region: CCC1_like_1; cd02437
471473000492	3 probable transmembrane helices predicted for CTL0097 by TMHMM2.0 at aa 63-85, 181-203 and 223-245
471473000493	seryl-tRNA synthetase; Provisional; Region: PRK05431
471473000494	Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403
471473000495	Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme...; Region: SerRS_core; cd00770
471473000496	dimer interface [polypeptide binding]; other site
471473000497	active site
471473000498	motif 1; other site
471473000499	motif 2; other site
471473000500	motif 3; other site
471473000501	HMMPfam hit to PF00587, tRNA synthetase class II core domain (G,, score 2.4e-62
471473000502	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
471473000503	HMMPfam hit to PF02403, Seryl-tRNA synthetase N-terminal domain, score 7.6e-33
471473000504	riboflavin biosynthesis protein RibD; Region: eubact_ribD; TIGR00326
471473000505	Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the...; Region: Riboflavin_deaminase-reductase; cd01284
471473000506	catalytic motif [active]
471473000507	Zn binding site [ion binding]; other site
471473000508	RibD C-terminal domain; Region: RibD_C; pfam01872
471473000509	HMMPfam hit to PF00383, Cytidine and deoxycytidylate deaminas, score 2.9e-40
471473000510	PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature
471473000511	HMMPfam hit to PF01872, RibD C-terminal domain,score 4.4e-95
471473000512	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional; Region: PRK09311
471473000513	3,4-dihydroxy-2-butanone 4-phosphate synthase; Region: DHBP_synthase; pfam00926
471473000514	GTP cyclohydrolase II (RibA).  GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cd00641
471473000515	dimerization interface [polypeptide binding]; other site
471473000516	active site
471473000517	PS00430 TonB-dependent receptor proteins signature 1
471473000518	HMMPfam hit to PF00926, 3,4-dihydroxy-2-butanone 4-phosphate, score 1.6e-97
471473000519	HMMPfam hit to PF00925, GTP cyclohydrolase II,score 6.4e-98
471473000520	lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209
471473000521	homopentamer interface [polypeptide binding]; other site
471473000522	active site
471473000523	HMMPfam hit to PF00885,6,7-dimethyl-8-ribityllumazine synthase, score 3.4e-40
471473000524	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473000525	Na+/alanine symporter [Amino acid transport and metabolism]; Region: AlsT; COG1115
471473000526	Sodium:alanine symporter family; Region: Na_Ala_symp; cl00548
471473000527	11 probable transmembrane helices predicted for CTL0104 by TMHMM2.0 at aa 10-32, 67-89, 94-116,146-168,183-205, 212-229, 239-261, 300-322, 342-364,385-407 and 412-434
471473000528	HMMPfam hit to PF01235, Sodium:alanine symporter family, score 1.2e-18
471473000529	PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea; Region: PEBP_bact_arch; cd00865
471473000530	substrate binding site [chemical binding]; other site
471473000531	HMMPfam hit to PF01161,Phosphatidylethanolamine-binding protein, score 1.6e-58
471473000532	Proteins containing SET domain [General function prediction only]; Region: COG2940
471473000533	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Region: SET; smart00317
471473000534	HMMPfam hit to PF00856, SET domain, score 1.7e-35
471473000535	Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]; Region: PhnP; COG1235
471473000536	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 9.8e-15
471473000537	Domain of unknown function (DUF4117); Region: DUF4117; pfam13491
471473000538	DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]; Region: FtsK; COG1674
471473000539	FtsK/SpoIIIE family; Region: FtsK_SpoIIIE; pfam01580
471473000540	Ftsk gamma domain; Region: Ftsk_gamma; pfam09397
471473000541	HMMPfam hit to PF01580, FtsK/SpoIIIE family, score 1.5e-61
471473000542	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000543	5 probable transmembrane helices predicted for CTL0108 by TMHMM2.0 at aa 17-39, 49-71, 91-113, 128-150 and 159-181
471473000544	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]; Region: NqrF; COG2871
471473000545	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
471473000546	catalytic loop [active]
471473000547	iron binding site [ion binding]; other site
471473000548	Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase; Region: NADH_quinone_reductase; cd06188
471473000549	FAD binding pocket [chemical binding]; other site
471473000550	FAD binding motif [chemical binding]; other site
471473000551	phosphate binding motif [ion binding]; other site
471473000552	beta-alpha-beta structure motif; other site
471473000553	NAD binding pocket [chemical binding]; other site
471473000554	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 0.00069
471473000555	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 7.4e-12
471473000556	1 probable transmembrane helix predicted for CTL0109 by TMHMM2.0 at aa 7-29
471473000557	preprotein translocase, YajC subunit; Region: yajC; TIGR00739
471473000558	HMMPfam hit to PF02699, Preprotein translocase subunit, score 4e-40
471473000559	2 probable transmembrane helices predicted for CTL0110 by TMHMM2.0 at aa 2-21 and 31-50
471473000560	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473000561	tRNA (uracil-5-)-methyltransferase; Validated; Region: PRK05031
471473000562	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
471473000563	S-adenosylmethionine binding site [chemical binding]; other site
471473000564	HMMPfam hit to PF05958, tRNA (Uracil-5-)-methyltransferase, score 2.8e-08
471473000565	PS01231 RNA methyltransferase trmA family signature 2
471473000566	PS01230 RNA methyltransferase trmA family signature 1
471473000567	Histone H1-like protein Hc1; Region: Hc1; pfam07432
471473000568	HMMPfam hit to PF07432, Histone H1-like protein Hc1,score 4.7e-78
471473000569	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
471473000570	binding surface
471473000571	TPR motif; other site
471473000572	Tetratricopeptide repeat; Region: TPR_12; pfam13424
471473000573	protoporphyrinogen oxidase; Reviewed; Region: PRK11883
471473000574	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
471473000575	HMMPfam hit to PF01593, Flavin containing amine oxidoreductase, score 0.00038
471473000576	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.0012
471473000577	coproporphyrinogen III oxidase; Provisional; Region: PRK09249
471473000578	HemN C-terminal domain; Region: HemN_C; pfam06969
471473000579	HMMPfam hit to PF06969, HemN C-terminal region,score 1.9e-46
471473000580	HMMPfam hit to PF04055, Radical SAM superfamily,score 2e-21
471473000581	Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction...; Region: URO-D; cd00717
471473000582	substrate binding site [chemical binding]; other site
471473000583	active site
471473000584	HMMPfam hit to PF01208, Uroporphyrinogen decarboxylase (URO-D), score 1.6e-46
471473000585	Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]; Region: Mfd; COG1197
471473000586	CarD-like/TRCF domain; Region: CarD_CdnL_TRCF; pfam02559
471473000587	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
471473000588	ATP binding site [chemical binding]; other site
471473000589	putative Mg++ binding site [ion binding]; other site
471473000590	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
471473000591	nucleotide binding region [chemical binding]; other site
471473000592	ATP-binding site [chemical binding]; other site
471473000593	TRCF domain; Region: TRCF; pfam03461
471473000594	HMMPfam hit to PF03461, TRCF domain, score 4.3e-43
471473000595	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 4.7e-17
471473000596	HMMPfam hit to PF00270, DEAD/DEAH box helicase,score 1e-32
471473000597	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000598	HMMPfam hit to PF02559, CarD-like/TRCF domain,score 3e-35
471473000599	alanyl-tRNA synthetase; Reviewed; Region: alaS; PRK00252
471473000600	Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: AlaRS_core; cd00673
471473000601	motif 1; other site
471473000602	active site
471473000603	motif 2; other site
471473000604	motif 3; other site
471473000605	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; pfam07973
471473000606	DHHA1 domain; Region: DHHA1; pfam02272
471473000607	HMMPfam hit to PF02272, DHHA1 domain, score 1.4e-12
471473000608	HMMPfam hit to PF07973, Threonyl and Alanyl tRNA synthetase seco, score 6.5e-17
471473000609	HMMPfam hit to PF01411, tRNA synthetases class II (A), score 0
471473000610	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
471473000611	Transketolase [Carbohydrate transport and metabolism]; Region: TktA; COG0021
471473000612	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
471473000613	TPP-binding site [chemical binding]; other site
471473000614	dimer interface [polypeptide binding]; other site
471473000615	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
471473000616	PYR/PP interface [polypeptide binding]; other site
471473000617	dimer interface [polypeptide binding]; other site
471473000618	TPP binding site [chemical binding]; other site
471473000619	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
471473000620	HMMPfam hit to PF00456, Transketolase, thiamine diphosphate b, score 1.3e-154
471473000621	HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 1.9e-64
471473000622	PS00213 Lipocalin signature
471473000623	HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 0.0009
471473000624	AMP nucleosidase, putative; Region: AMN-like; TIGR01721
471473000625	HMMPfam hit to PF01048, Phosphorylase family, score 7.4e-08
471473000626	elongation factor P; Validated; Region: PRK00529
471473000627	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
471473000628	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
471473000629	RNA binding site [nucleotide binding]; other site
471473000630	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
471473000631	RNA binding site [nucleotide binding]; other site
471473000632	HMMPfam hit to PF08207, Elongation factor P (EF-P) KOW-like domain, score 1.2e-18
471473000633	HMMPfam hit to PF01132, Elongation factor P (EF-P) OB domain, score 3.8e-05
471473000634	PS01275 Elongation factor P signature
471473000635	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
471473000636	Bacillus subtilis YydB and related proteins, metallophosphatase domain; Region: MPP_YydB; cd07400
471473000637	putative active site [active]
471473000638	putative metal binding site [ion binding]; other site
471473000639	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
471473000640	active site
471473000641	metal binding site [ion binding]; metal-binding site
471473000642	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 7.8e-17
471473000643	Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]; Region: GroL; COG0459
471473000644	HMMPfam hit to PF00118, TCP-1/cpn60 chaperonin family, score 1.5e-21
471473000645	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
471473000646	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Region: murF; TIGR01143
471473000647	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
471473000648	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
471473000649	HMMPfam hit to PF01225, Mur ligase family,catalytic domain, score 5.5e-16
471473000650	HMMPfam hit to PF08245, Mur ligase middle domain,score 8.6e-17
471473000651	HMMPfam hit to PF02875, Mur ligase family,glutamate ligase doma, score 6.9e-09
471473000652	phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional; Region: mraY; PRK00108
471473000653	Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of...; Region: GT_MraY; cd06852
471473000654	Mg++ binding site [ion binding]; other site
471473000655	putative catalytic motif [active]
471473000656	putative substrate binding site [chemical binding]; other site
471473000657	10 probable transmembrane helices predicted for CTL0126 by TMHMM2.0 at aa 10-29, 54-76, 80-99,119-137,157-179, 184-206, 210-232, 239-261, 265-287 and 313-335
471473000658	HMMPfam hit to PF00953, Glycosyl transferase family,score 3.2e-40
471473000659	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional; Region: murD; PRK00683
471473000660	TrkA-N domain; Region: TrkA_N; pfam02254
471473000661	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
471473000662	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
471473000663	HMMPfam hit to PF08245, Mur ligase middle domain,score 3e-23
471473000664	HMMPfam hit to PF02875, Mur ligase family,glutamate ligase doma, score 1.2e-12
471473000665	FOG: LysM repeat [Cell envelope biogenesis, outer membrane]; Region: LytE; COG1388
471473000666	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
471473000667	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
471473000668	1 probable transmembrane helix predicted for CTL0128 by TMHMM2.0 at aa 7-25
471473000669	HMMPfam hit to PF01476, LysM domain, score 1e-16
471473000670	HMMPfam hit to PF01476, LysM domain, score 3.2e-13
471473000671	cell division protein FtsW; Region: ftsW; TIGR02614
471473000672	HMMPfam hit to PF01098, Cell cycle protein, score 8e-79
471473000673	9 probable transmembrane helices predicted for CTL0129 by TMHMM2.0 at aa 4-21, 41-63, 73-92,137-154,159-176, 181-203, 267-289, 296-318 and 333-355
471473000674	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Region: murG; TIGR01133
471473000675	MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide...; Region: GT1_MurG; cd03785
471473000676	active site
471473000677	homodimer interface [polypeptide binding]; other site
471473000678	HMMPfam hit to PF03033, Glycosyltransferase family,score 2.3e-42
471473000679	1 probable transmembrane helix predicted for CTL0130 by TMHMM2.0 at aa 7-29
471473000680	HMMPfam hit to PF04101, Glycosyltransferase family,score 4.3e-54
471473000681	bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional; Region: PRK14573
471473000682	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
471473000683	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
471473000684	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
471473000685	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
471473000686	D-ala D-ala ligase C-terminus; Region: Dala_Dala_lig_C; pfam07478
471473000687	1 probable transmembrane helix predicted for CTL0131 by TMHMM2.0 at aa 5-24
471473000688	HMMPfam hit to PF01225, Mur ligase family,catalytic domain, score 7.5e-34
471473000689	HMMPfam hit to PF08245, Mur ligase middle domain,score 5.8e-15
471473000690	HMMPfam hit to PF02875, Mur ligase family,glutamate ligase d, score 3.6e-26
471473000691	HMMPfam hit to PF01820, D-ala D-ala ligase N-terminus, score 1.3e-61
471473000692	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000693	PS00843 D-alanine--D-alanine ligase signature 1
471473000694	HMMPfam hit to PF07478, D-ala D-ala ligase C-terminus, score 1.3e-113
471473000695	HMMPfam hit to PF02222, ATP-grasp domain, score 0.0014
471473000696	Predicted RNA-binding protein (contains KH domain) [General function prediction only]; Region: COG1837
471473000697	KH-II  (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins  (e.g. ribosomal protein S3), transcription factors (e.g. NusA_K), and post-transcriptional...; Region: KH-II; cd02409
471473000698	G-X-X-G motif; other site
471473000699	PS00079 Multicopper oxidases signature 1
471473000700	1 probable transmembrane helix predicted for CTL0133 by TMHMM2.0 at aa 26-48
471473000701	Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043
471473000702	anti sigma factor interaction site; other site
471473000703	regulatory phosphorylation site [posttranslational modification]; other site
471473000704	HMMPfam hit to PF01740, STAS domain, score 7.2e-28
471473000705	tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed; Region: miaA; PRK00091
471473000706	tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]; Region: MiaA; COG0324
471473000707	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000708	HMMPfam hit to PF01715, IPP transferase, score 2.7e-72
471473000709	hypothetical protein; Provisional; Region: PRK05927
471473000710	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cl15377
471473000711	FeS/SAM binding site; other site
471473000712	HMMPfam hit to PF04055, Radical SAM superfamily,score 7.7e-20
471473000713	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
471473000714	Uncharacterized homolog of plant Iojap protein [Function unknown]; Region: COG0799
471473000715	HMMPfam hit to PF02410, Domain of unknown function DUF143, score 6.6e-55
471473000716	3-oxoacyl-(acyl carrier protein) synthase II; Reviewed; Region: PRK06333
471473000717	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
471473000718	dimer interface [polypeptide binding]; other site
471473000719	active site
471473000720	HMMPfam hit to PF00109, Beta-ketoacyl synthase,N-terminal do, score 8.7e-87
471473000721	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473000722	PS00205 Transferrins signature 1
471473000723	PS00606 Beta-ketoacyl synthases active site
471473000724	HMMPfam hit to PF02801, Beta-ketoacyl synthase,C-terminal do, score 2.7e-64
471473000725	Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant...; Region: Ap4A_hydrolase_human_like; cd03428
471473000726	active site
471473000727	Ap4A binding cleft/pocket [chemical binding]; other site
471473000728	P4 phosphate binding site; other site
471473000729	nudix motif; other site
471473000730	putative P2/P3 phosphate binding site [ion binding]; other site
471473000731	HMMPfam hit to PF00293, NUDIX domain, score 6.9e-25
471473000732	PS00893 mutT domain signature
471473000733	Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers; Region: pyrophosphatase; cd00412
471473000734	dimer interface [polypeptide binding]; other site
471473000735	substrate binding site [chemical binding]; other site
471473000736	metal binding sites [ion binding]; metal-binding site
471473000737	HMMPfam hit to PF00719, Inorganic pyrophosphatase,score 5.8e-16
471473000738	PS00387 Inorganic pyrophosphatase signature
471473000739	Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Region: GdhA; COG0334
471473000740	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Region: ELFV_dehydrog_N; pfam02812
471473000741	NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase; Region: NAD_bind_Leu_Phe_Val_DH; cd01075
471473000742	NAD binding site [chemical binding]; other site
471473000743	Phe binding site; other site
471473000744	HMMPfam hit to PF02812, Glu/Leu/Phe/Val dehydrogenase, dimeri, score 5.1e-18
471473000745	PS01109 Ribosomal protein L10 signature
471473000746	HMMPfam hit to PF00208,Glutamate/Leucine/Phenylalanine/Valin, score 3e-23
471473000747	PAP-phosphatase_like domains. PAP-phosphatase is a member of the inositol monophosphatase family, and catalyses the hydrolysis of 3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In Saccharomyces cerevisiae, HAL2 (MET22) is involved in methionine...; Region: PAP_phosphatase; cd01517
471473000748	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]; Region: SuhB; COG0483
471473000749	active site
471473000750	putative lithium-binding site [ion binding]; other site
471473000751	substrate binding site [chemical binding]; other site
471473000752	HMMPfam hit to PF00459, Inositol monophosphatase family, score 2.1e-66
471473000753	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
471473000754	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
471473000755	putative acyl-acceptor binding pocket; other site
471473000756	HMMPfam hit to PF01553, Acyltransferase, score 0.00014
471473000757	long chain fatty acid--[acyl-carrier-protein] ligase; Validated; Region: PRK06334
471473000758	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
471473000759	acyl-activating enzyme (AAE) consensus motif; other site
471473000760	AMP binding site [chemical binding]; other site
471473000761	active site
471473000762	CoA binding site [chemical binding]; other site
471473000763	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.3e-87
471473000764	1 probable transmembrane helix predicted for CTL0145 by TMHMM2.0 at aa 69-91
471473000765	8-amino-7-oxononanoate synthase; Provisional; Region: PRK05937
471473000766	Aminotransferase class I and II; Region: Aminotran_1_2; pfam00155
471473000767	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
471473000768	catalytic residue [active]
471473000769	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.3e-15
471473000770	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site
471473000771	Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]; Region: PriA; COG1198
471473000772	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
471473000773	ATP binding site [chemical binding]; other site
471473000774	putative Mg++ binding site [ion binding]; other site
471473000775	helicase superfamily c-terminal domain; Region: HELICc; smart00490
471473000776	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 0.0083
471473000777	HMMPfam hit to PF00270, DEAD/DEAH box helicase,score 5.1e-08
471473000778	HMMPfam hit to PF04851, Type III restriction enzyme,res subunit, score 1e-07
471473000779	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000780	Thioredoxin-like domain; Region: Thioredoxin_2; pfam13098
471473000781	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
471473000782	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473000783	1 probable transmembrane helix predicted for CTL0149 by TMHMM2.0 at aa 4-23
471473000784	lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484
471473000785	LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop; Region: LysRS_N; cd04322
471473000786	dimer interface [polypeptide binding]; other site
471473000787	putative anticodon binding site; other site
471473000788	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
471473000789	motif 1; other site
471473000790	dimer interface [polypeptide binding]; other site
471473000791	active site
471473000792	motif 2; other site
471473000793	motif 3; other site
471473000794	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 1.3e-12
471473000795	HMMPfam hit to PF00152, tRNA synthetases class II (D, K and N), score 4.5e-128
471473000796	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
471473000797	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
471473000798	cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260
471473000799	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
471473000800	active site
471473000801	HIGH motif; other site
471473000802	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
471473000803	KMSKS motif; other site
471473000804	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
471473000805	tRNA binding surface [nucleotide binding]; other site
471473000806	anticodon binding site; other site
471473000807	HMMPfam hit to PF01406, tRNA synthetases class I (C) catalytic d, score 1.7e-135
471473000808	Thioredoxin-like; Region: Thioredoxin_7; pfam13899
471473000809	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
471473000810	ribonuclease P; Reviewed; Region: rnpA; PRK00730
471473000811	HMMPfam hit to PF00825, Ribonuclease P, score 3.3e-14
471473000812	PS00648 Bacterial ribonuclease P protein component signature
471473000813	50S ribosomal protein L34; Reviewed; Region: rpmH; PRK00399
471473000814	50S ribosomal protein L36; Validated; Region: rpmJ; PRK00831
471473000815	30S ribosomal protein S14; Reviewed; Region: rpsN; PRK08881
471473000816	HMMPfam hit to PF00253, Ribosomal protein S14p/S29e,score 7.6e-23
471473000817	PS00527 Ribosomal protein S14 signature
471473000818	Domain of unknown function (DUF4339); Region: DUF4339; pfam14237
471473000819	2 probable transmembrane helices predicted for CTL0156 by TMHMM2.0 at aa 5-24 and 31-53
471473000820	PS00636 Nt-dnaJ domain signature
471473000821	3 probable transmembrane helices predicted for CTL0157 by TMHMM2.0 at aa 12-29, 33-50 and 57-79
471473000822	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1302
471473000823	HMMPfam hit to PF03780, Protein of unknown function (DUF322), score 6.5e-43
471473000824	excinuclease ABC subunit C; Validated; Region: uvrC; PRK00558
471473000825	Catalytic GIY-YIG domain of nucleotide excision repair endonucleases UvrC, Cho, and similar proteins; Region: GIY-YIG_UvrC_Cho; cd10434
471473000826	active site
471473000827	catalytic site [active]
471473000828	putative DNA binding site [nucleotide binding]; other site
471473000829	GIY-YIG motif/motif A; other site
471473000830	metal binding site [ion binding]; metal-binding site
471473000831	UvrC Helix-hairpin-helix N-terminal; Region: UvrC_HhH_N; pfam08459
471473000832	HMMPfam hit to PF08459, UvrC Helix-hairpin-helix N-terminal, score 7.1e-73
471473000833	HMMPfam hit to PF01541, GIY-YIG catalytic domain,score 1.2e-22
471473000834	DNA mismatch repair protein MutS; Provisional; Region: PRK05399
471473000835	MutS domain I; Region: MutS_I; pfam01624
471473000836	MutS domain II; Region: MutS_II; pfam05188
471473000837	MutS domain III; Region: MutS_III; pfam05192
471473000838	ATP-binding cassette domain of MutS1 homolog; Region: ABC_MutS1; cd03284
471473000839	Walker A/P-loop; other site
471473000840	ATP binding site [chemical binding]; other site
471473000841	Q-loop/lid; other site
471473000842	ABC transporter signature motif; other site
471473000843	Walker B; other site
471473000844	D-loop; other site
471473000845	H-loop/switch region; other site
471473000846	HMMPfam hit to PF00488, MutS domain V, score 5.9e-161
471473000847	PS00486 DNA mismatch repair proteins mutS family signature
471473000848	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000849	HMMPfam hit to PF05192, MutS domain III, score 4.7e-74
471473000850	HMMPfam hit to PF05190, MutS family domain IV,score 9.7e-36
471473000851	HMMPfam hit to PF05188, MutS domain II, score 1.7e-38
471473000852	HMMPfam hit to PF01624, MutS domain I, score 1.9e-56
471473000853	DNA primase; Validated; Region: dnaG; PRK05667
471473000854	CHC2 zinc finger; Region: zf-CHC2; pfam01807
471473000855	DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275
471473000856	TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364
471473000857	active site
471473000858	metal binding site [ion binding]; metal-binding site
471473000859	interdomain interaction site; other site
471473000860	HMMPfam hit to PF01807, CHC2 zinc finger, score 3.8e-62
471473000861	HMMPfam hit to PF08275, DNA primase catalytic core,N-terminal domai, score 5.8e-51
471473000862	HMMPfam hit to PF01751, Toprim domain, score 7.4e-17
471473000863	1 probable transmembrane helix predicted for CTL0163 by TMHMM2.0 at aa 7-26
471473000864	glycyl-tRNA synthetase; Provisional; Region: PRK14908
471473000865	Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the...; Region: GlyRS_alpha_core; cd00733
471473000866	dimer interface [polypeptide binding]; other site
471473000867	motif 1; other site
471473000868	active site
471473000869	motif 2; other site
471473000870	motif 3; other site
471473000871	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
471473000872	HMMPfam hit to PF05746, DALR anticodon binding domain, score 0.0021
471473000873	HMMPfam hit to PF02092, Glycyl-tRNA synthetase beta subunit, score 0
471473000874	HMMPfam hit to PF02091, Glycyl-tRNA synthetase alpha subunit, score 2.3e-235
471473000875	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
471473000876	Phosphatidylglycerophosphate synthase [Lipid metabolism]; Region: PgsA; COG0558
471473000877	5 probable transmembrane helices predicted for CTL0166 by TMHMM2.0 at aa 5-24, 29-51, 82-104, 134-156 and 163-185
471473000878	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 1.4e-32
471473000879	PS00379 CDP-alcohol phosphatidyltransferases signature
471473000880	glycogen synthase; Provisional; Region: glgA; PRK00654
471473000881	This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family...; Region: GT1_Glycogen_synthase_DULL1_like; cd03791
471473000882	ADP-binding pocket [chemical binding]; other site
471473000883	homodimer interface [polypeptide binding]; other site
471473000884	HMMPfam hit to PF00534, Glycosyl transferases group,score 0.00047
471473000885	HMMPfam hit to PF08323, Starch synthase catalytic domain, score 1.5e-82
471473000886	Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain; Region: Ribosomal_L25_TL5_CTC; cd00495
471473000887	ribosomal protein L25, Ctc-form; Region: ctc_TL5; TIGR00731
471473000888	5S rRNA interface [nucleotide binding]; other site
471473000889	CTC domain interface [polypeptide binding]; other site
471473000890	L16 interface [polypeptide binding]; other site
471473000891	HMMPfam hit to PF01386, Ribosomal L25p family,score 6.7e-09
471473000892	Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462
471473000893	putative active site [active]
471473000894	catalytic residue [active]
471473000895	HMMPfam hit to PF01195, Peptidyl-tRNA hydrolase,score 5.9e-48
471473000896	PS01195 Peptidyl-tRNA hydrolase signature 1
471473000897	PS01196 Peptidyl-tRNA hydrolase signature 2
471473000898	Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]; Region: RpsF; COG0360
471473000899	HMMPfam hit to PF01250, Ribosomal protein S6, score 4.7e-17
471473000900	30S ribosomal protein S18; Reviewed; Region: rpsR; PRK00391
471473000901	HMMPfam hit to PF01084, Ribosomal protein S18,score 2.1e-32
471473000902	PS00057 Ribosomal protein S18 signature
471473000903	Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Region: RplI; COG0359
471473000904	Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281
471473000905	Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948
471473000906	HMMPfam hit to PF01281, Ribosomal protein L9,N-terminal domai, score 4.3e-15
471473000907	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: PRK00650
471473000908	HMMPfam hit to PF00288, GHMP kinases N terminal domain, score 2.6e-14
471473000909	HMMPfam hit to PF08544, GHMP kinases C terminal,score 3.3e-05
471473000910	Protein of unknown function (DUF1504); Region: DUF1504; pfam07399
471473000911	HMMPfam hit to PF07399, Protein of unknown function (DUF1504), score 0
471473000912	11 probable transmembrane helices predicted for CTL0174 by TMHMM2.0 at aa 10-32, 61-83, 98-116,136-153,180-202, 223-242, 267-298, 311-330, 345-367,379-401 and 416-438
471473000913	Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]; Region: Ptr; COG1025
471473000914	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
471473000915	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
471473000916	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
471473000917	HMMPfam hit to PF05193, Peptidase M16 inactive domain, score 1.2e-18
471473000918	HMMPfam hit to PF05193, Peptidase M16 inactive domain, score 1.6e-25
471473000919	HMMPfam hit to PF00675, Insulinase (Peptidase family M16), score 5.9e-26
471473000920	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473000921	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT; Region: LPLAT_GPAT; cd07985
471473000922	putative G3P-binding pocket; other site
471473000923	HMMPfam hit to PF01553, Acyltransferase, score 1.2e-38
471473000924	ribonuclease, Rne/Rng family; Region: RNaseEG; TIGR00757
471473000925	S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453
471473000926	homodimer interface [polypeptide binding]; other site
471473000927	oligonucleotide binding site [chemical binding]; other site
471473000928	50S ribosomal protein L32; Reviewed; Region: rpmF; PRK12286
471473000929	HMMPfam hit to PF01783, Ribosomal L32p protein family, score 2.4e-23
471473000930	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature
471473000931	putative glycerol-3-phosphate acyltransferase PlsX; Provisional; Region: PRK13846
471473000932	HMMPfam hit to PF02504, Fatty acid synthesis protein, score 8.7e-176
471473000933	Chlamydia polymorphic membrane protein middle domain; Region: ChlamPMP_M; pfam07548
471473000934	Autotransporter beta-domain; Region: Autotransporter; pfam03797
471473000935	PS00430 TonB-dependent receptor proteins signature 1
471473000936	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473000937	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 8.5
471473000938	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 12
471473000939	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 1.9
471473000940	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 5.7
471473000941	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.08
471473000942	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 6.2
471473000943	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 33
471473000944	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 11
471473000945	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 4.2
471473000946	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 2
471473000947	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 5.7
471473000948	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.79
471473000949	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 9.8
471473000950	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.2
471473000951	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.0034
471473000952	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 2.8
471473000953	HMMPfam hit to PF07548, Chlamydia polymorphic membrane protei, score 1.2e-55
471473000954	HMMPfam hit to PF03797, Autotransporter beta-domain,score 1.2e-39
471473000955	Protein of unknown function (DUF972); Region: DUF972; pfam06156
471473000956	HMMPfam hit to PF04156, IncA protein, score 5.2e-43
471473000957	2 probable transmembrane helices predicted for CTL0184 by TMHMM2.0 at aa 40-62 and 72-94
471473000958	YtxH-like protein; Region: YtxH; cl02079
471473000959	1 probable transmembrane helix predicted for CTL0185 by TMHMM2.0 at aa 47-69
471473000960	1 probable transmembrane helix predicted for CTL0186 by TMHMM2.0 at aa 10-32
471473000961	phosphoglucosamine mutase; Provisional; Region: glmM; PRK14314
471473000962	GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of...; Region: GlmM; cd05802
471473000963	active site
471473000964	substrate binding site [chemical binding]; other site
471473000965	metal binding site [ion binding]; metal-binding site
471473000966	HMMPfam hit to PF02878,Phosphoglucomutase/phosphomannomutase, al, score 2.9e-63
471473000967	PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature
471473000968	HMMPfam hit to PF02879,Phosphoglucomutase/phosphomannomutase, al, score 8.1e-35
471473000969	HMMPfam hit to PF02880,Phosphoglucomutase/phosphomannomutase, al, score 1.3e-24
471473000970	HMMPfam hit to PF00408,Phosphoglucomutase/phosphomannomutase, C-, score 8.3e-05
471473000971	glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Region: glmS; TIGR01135
471473000972	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
471473000973	glutaminase active site [active]
471473000974	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
471473000975	dimer interface [polypeptide binding]; other site
471473000976	active site
471473000977	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
471473000978	dimer interface [polypeptide binding]; other site
471473000979	active site
471473000980	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 2.1e-33
471473000981	PS00211 ABC transporters family signature
471473000982	PS00017 ATP/GTP-binding site motif A (P-loop)
471473000983	HMMPfam hit to PF01380, SIS domain, score 2.7e-30
471473000984	HMMPfam hit to PF01380, SIS domain, score 1.1e-14
471473000985	Tryptophan/tyrosine permease family; Region: Trp_Tyr_perm; pfam03222
471473000986	aromatic amino acid transport protein; Region: araaP; TIGR00837
471473000987	HMMPfam hit to PF03222, Tryptophan/tyrosine permease family, score 5.6e-219
471473000988	11 probable transmembrane helices predicted for CTL0189 by TMHMM2.0 at aa 7-29, 39-61, 82-101,121-138,151-170, 185-207, 219-241, 268-290, 311-330,340-357 and 370-392
471473000989	Tryptophan/tyrosine permease family; Region: Trp_Tyr_perm; pfam03222
471473000990	aromatic amino acid transport protein; Region: araaP; TIGR00837
471473000991	HMMPfam hit to PF03222, Tryptophan/tyrosine permease family, score 4.1e-210
471473000992	11 probable transmembrane helices predicted for CTL0190 by TMHMM2.0 at aa 7-29, 39-61, 82-104,124-146,153-175, 190-209, 221-243, 272-294, 311-328,338-357 and 378-396
471473000993	motif repeated in this and the adjacent CDS gene product
471473000994	motif repeated in this and the adjacent CDS gene product
471473000995	Integral membrane protein, interacts with FtsH [General function prediction only]; Region: COG0670
471473000996	Bacterial BAX inhibitor (BI)-1/YccA-like proteins; Region: BI-1-like_bacterial; cd10432
471473000997	HMMPfam hit to PF01027, Uncharacterised protein family UPF0005, score 2.4e-06
471473000998	7 probable transmembrane helices predicted for CTL0191 by TMHMM2.0 at aa 21-43, 48-67, 74-96,106-128,141-163, 167-186 and 206-228
471473000999	SRP54-type protein, helical bundle domain; Region: SRP54_N; pfam02881
471473001000	signal recognition particle-docking protein FtsY; Provisional; Region: PRK10416
471473001001	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
471473001002	HMMPfam hit to PF00448, SRP54-type protein, GTPase domain, score 1.2e-109
471473001003	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001004	succinyl-CoA synthetase, beta subunit; Region: sucCoAbeta; TIGR01016
471473001005	ATP-grasp domain; Region: ATP-grasp_2; pfam08442
471473001006	CoA-ligase; Region: Ligase_CoA; pfam00549
471473001007	HMMPfam hit to PF08442, ATP-grasp domain, score 1.9e-82
471473001008	HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase, ATP, score 0.0025
471473001009	HMMPfam hit to PF00549, CoA-ligase, score 5.2e-41
471473001010	2 probable transmembrane helices predicted for CTL0193 by TMHMM2.0 at aa 248-270 and 313-335
471473001011	PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3
471473001012	succinyl-CoA synthetase subunit alpha; Validated; Region: PRK05678
471473001013	CoA binding domain; Region: CoA_binding; smart00881
471473001014	CoA-ligase; Region: Ligase_CoA; pfam00549
471473001015	HMMPfam hit to PF02629, CoA binding domain, score 9.2e-44
471473001016	HMMPfam hit to PF00549, CoA-ligase, score 2.4e-57
471473001017	PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1
471473001018	PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site
471473001019	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001020	periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037
471473001021	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
471473001022	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
471473001023	protein binding site [polypeptide binding]; other site
471473001024	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
471473001025	protein binding site [polypeptide binding]; other site
471473001026	HMMPfam hit to PF00089, Trypsin, score 2e-18
471473001027	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 1.5e-12
471473001028	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 0.0014
471473001029	Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]; Region: COG1026
471473001030	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
471473001031	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
471473001032	Peptidase M16C associated; Region: M16C_assoc; pfam08367
471473001033	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
471473001034	HMMPfam hit to PF00675, Insulinase (Peptidase family M16), score 0.019
471473001035	HMMPfam hit to PF05193, Peptidase M16 inactive domain, score 1e-27
471473001036	HMMPfam hit to PF08367, Peptidase M16C associated,score 4e-118
471473001037	HMMPfam hit to PF05193, Peptidase M16 inactive domain, score 2.1e-24
471473001038	Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]; Region: COG1322
471473001039	RmuC family; Region: RmuC; pfam02646
471473001040	HMMPfam hit to PF02646, RmuC family, score 6.2e-140
471473001041	1 probable transmembrane helix predicted for CTL0197 by TMHMM2.0 at aa 13-35
471473001042	Phosphatidylserine synthase [Lipid metabolism]; Region: PssA; COG1183
471473001043	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; pfam01066
471473001044	7 probable transmembrane helices predicted for CTL0198 by TMHMM2.0 at aa 15-37, 79-101, 111-133,145-167,182-204, 211-230 and 235-257
471473001045	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 4.7e-22
471473001046	PS00379 CDP-alcohol phosphatidyltransferases signature
471473001047	ribonucleotide-diphosphate reductase subunit alpha; Provisional; Region: PRK12365
471473001048	ATP cone domain; Region: ATP-cone; pfam03477
471473001049	ATP cone domain; Region: ATP-cone; pfam03477
471473001050	Class I ribonucleotide reductase; Region: RNR_I; cd01679
471473001051	active site
471473001052	dimer interface [polypeptide binding]; other site
471473001053	catalytic residues [active]
471473001054	effector binding site; other site
471473001055	R2 peptide binding site; other site
471473001056	HMMPfam hit to PF03477, ATP cone domain, score 7.1e-32
471473001057	HMMPfam hit to PF03477, ATP cone domain, score 1.6e-33
471473001058	HMMPfam hit to PF03477, ATP cone domain, score 2e-08
471473001059	HMMPfam hit to PF00317, Ribonucleotide reductase,all-alpha d, score 4.4e-30
471473001060	PS00185 Isopenicillin N synthetase signature 1
471473001061	HMMPfam hit to PF02867, Ribonucleotide reductase,barrel doma, score 1.1e-183
471473001062	Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049
471473001063	dimer interface [polypeptide binding]; other site
471473001064	putative radical transfer pathway; other site
471473001065	diiron center [ion binding]; other site
471473001066	tyrosyl radical; other site
471473001067	HMMPfam hit to PF00268, Ribonucleotide reductase,small chain, score 7e-35
471473001068	1 probable transmembrane helix predicted for CTL0200 by TMHMM2.0 at aa 185-207
471473001069	Putative methyltransferase; Region: Methyltransf_4; pfam02390
471473001070	HMMPfam hit to PF02390, Putative methyltransferase,score 2.2e-81
471473001071	Methyltransferase domain; Region: Methyltransf_18; pfam12847
471473001072	Putative rRNA methylase; Region: rRNA_methylase; pfam06962
471473001073	HMMPfam hit to PF06962, Putative rRNA methylase,score 3.3e-75
471473001074	UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional; Region: murB; PRK13905
471473001075	FAD binding domain; Region: FAD_binding_4; pfam01565
471473001076	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873
471473001077	HMMPfam hit to PF02873,UDP-N-acetylenolpyruvoylglucosamine red, score 3.4e-58
471473001078	HMMPfam hit to PF01565, FAD binding domain, score 5.4e-13
471473001079	Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus...; Region: Terminator_NusB; cd00619
471473001080	putative RNA binding site [nucleotide binding]; other site
471473001081	HMMPfam hit to PF01029, NusB family, score 3e-39
471473001082	translation initiation factor IF-3; Reviewed; Region: infC; PRK00028
471473001083	Translation initiation factor IF-3, N-terminal domain; Region: IF3_N; pfam05198
471473001084	Translation initiation factor IF-3, C-terminal domain; Region: IF3_C; pfam00707
471473001085	HMMPfam hit to PF05198, Translation initiation factor IF-3, N-termin, score 5.2e-48
471473001086	PS00938 Initiation factor 3 signature
471473001087	HMMPfam hit to PF00707, Translation initiation factor IF-3, C-termin, score 2.1e-51
471473001088	Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Region: RpmI; COG0291
471473001089	HMMPfam hit to PF01632, Ribosomal protein L35,score 2.6e-11
471473001090	Ribosomal protein L20; Region: Ribosomal_L20; cd07026
471473001091	23S rRNA binding site [nucleotide binding]; other site
471473001092	L21 binding site [polypeptide binding]; other site
471473001093	L13 binding site [polypeptide binding]; other site
471473001094	HMMPfam hit to PF00453, Ribosomal protein L20,score 2.4e-32
471473001095	PS00937 Ribosomal protein L20 signature
471473001096	phenylalanyl-tRNA synthetase subunit alpha; Validated; Region: pheS; PRK00488
471473001097	Aminoacyl tRNA synthetase class II, N-terminal domain; Region: Phe_tRNA-synt_N; pfam02912
471473001098	Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible...; Region: PheRS_alpha_core; cd00496
471473001099	motif 1; other site
471473001100	dimer interface [polypeptide binding]; other site
471473001101	active site
471473001102	motif 2; other site
471473001103	motif 3; other site
471473001104	HMMPfam hit to PF02912, Aminoacyl tRNA synthetase class II, N, score 8e-26
471473001105	HMMPfam hit to PF01409, tRNA synthetases class II core domain, score 1.4e-145
471473001106	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature
471473001107	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
471473001108	Predicted permeases [General function prediction only]; Region: COG0795
471473001109	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
471473001110	HMMPfam hit to PF03739, Predicted permease YjgP/YjgQ family, score 2.2e-70
471473001111	4 probable transmembrane helices predicted for CTL0210 by TMHMM2.0 at aa 7-29, 279-301, 313-335 and 340-362
471473001112	Predicted permeases [General function prediction only]; Region: COG0795
471473001113	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
471473001114	HMMPfam hit to PF03739, Predicted permease YjgP/YjgQ family, score 7e-79
471473001115	6 probable transmembrane helices predicted for CTL0211 by TMHMM2.0 at aa 17-39, 54-76, 97-116,274-293,300-317 and 322-344
471473001116	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001117	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001118	tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]; Region: MesJ; COG0037
471473001119	N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992
471473001120	Ligand Binding Site [chemical binding]; other site
471473001121	HMMPfam hit to PF01171, PP-loop family, score 2e-69
471473001122	HMMPfam hit to PF06508, ExsB, score 0.0036
471473001123	ATP-dependent metalloprotease FtsH; Region: FtsH_fam; TIGR01241
471473001124	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473001125	Walker A motif; other site
471473001126	ATP binding site [chemical binding]; other site
471473001127	Walker B motif; other site
471473001128	arginine finger; other site
471473001129	Peptidase family M41; Region: Peptidase_M41; pfam01434
471473001130	2 probable transmembrane helices predicted for CTL0213 by TMHMM2.0 at aa 15-37 and 372-394
471473001131	HMMPfam hit to PF06480, FtsH Extracellular, score 1.8e-36
471473001132	HMMPfam hit to PF00004, ATPase family associated with various c, score 1.3e-91
471473001133	HMMPfam hit to PF07728, ATPase family associated with various c, score 0.00022
471473001134	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001135	PS00674 AAA-protein family signature
471473001136	HMMPfam hit to PF01434, Peptidase family M41, score 4.3e-121
471473001137	polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824
471473001138	Polyribonucleotide nucleotidyltransferase, repeat 1; Region: RNase_PH_PNPase_1; cd11363
471473001139	RNase E interface [polypeptide binding]; other site
471473001140	trimer interface [polypeptide binding]; other site
471473001141	Polyribonucleotide nucleotidyltransferase, RNA binding domain; Region: PNPase; pfam03726
471473001142	Polyribonucleotide nucleotidyltransferase, repeat 2; Region: RNase_PH_PNPase_2; cd11364
471473001143	RNase E interface [polypeptide binding]; other site
471473001144	trimer interface [polypeptide binding]; other site
471473001145	active site
471473001146	Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393
471473001147	putative nucleic acid binding region [nucleotide binding]; other site
471473001148	G-X-X-G motif; other site
471473001149	S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase  is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA; Region: S1_PNPase; cd04472
471473001150	RNA binding site [nucleotide binding]; other site
471473001151	domain interface; other site
471473001152	HMMPfam hit to PF00575, S1 RNA binding domain,score 3.3e-16
471473001153	HMMPfam hit to PF00013, KH domain, score 5.7e-16
471473001154	HMMPfam hit to PF03725, 3' exoribonuclease family,domain, score 5.7e-23
471473001155	HMMPfam hit to PF01138, 3' exoribonuclease family,domain, score 1.3e-46
471473001156	HMMPfam hit to PF03726, Polyribonucleotide nucleotidyltransferase,, score 0.00014
471473001157	HMMPfam hit to PF03725, 3' exoribonuclease family,domain, score 1.1e-14
471473001158	HMMPfam hit to PF01138, 3' exoribonuclease family,domain, score 8.9e-28
471473001159	Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome; Region: Ribosomal_S15p_S13e; cd00353
471473001160	16S/18S rRNA binding site [nucleotide binding]; other site
471473001161	S13e-L30e interaction site [polypeptide binding]; other site
471473001162	25S rRNA binding site [nucleotide binding]; other site
471473001163	HMMPfam hit to PF00312, Ribosomal protein S15,score 7.6e-27
471473001164	PS00362 Ribosomal protein S15 signature
471473001165	Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285
471473001166	nucleoside/Zn binding site; other site
471473001167	dimer interface [polypeptide binding]; other site
471473001168	catalytic motif [active]
471473001169	HMMPfam hit to PF00383, Cytidine and deoxycytidylate deaminas, score 1.8e-45
471473001170	4 probable transmembrane helices predicted for CTL0218 by TMHMM2.0 at aa 22-44, 120-142, 147-165 and 185-207
471473001171	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473001172	Protein of unknown function (DUF720); Region: DUF720; pfam05302
471473001173	HMMPfam hit to PF05302, Protein of unknown function (DUF720), score 1.7e-90
471473001174	Protein of unknown function (DUF720); Region: DUF720; pfam05302
471473001175	HMMPfam hit to PF05302, Protein of unknown function (DUF720), score 3.3e-82
471473001176	Protein of unknown function (DUF720); Region: DUF720; pfam05302
471473001177	HMMPfam hit to PF05302, Protein of unknown function (DUF720), score 5.2e-76
471473001178	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
471473001179	4 probable transmembrane helices predicted for CTL0223 by TMHMM2.0 at aa 15-37, 44-66, 71-88 and 95-117
471473001180	methionine aminopeptidase; Provisional; Region: PRK12318
471473001181	SEC-C motif; Region: SEC-C; pfam02810
471473001182	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
471473001183	active site
471473001184	HMMPfam hit to PF00557, metallopeptidase family M24,score 4.8e-54
471473001185	PS00215 Mitochondrial energy transfer proteins signature
471473001186	HMMPfam hit to PF02810, SEC-C motif, score 5e-10
471473001187	MarC family integral membrane protein; Region: MarC; pfam01914
471473001188	HMMPfam hit to PF01914, MarC family integral membrane protein, score 2.3e-82
471473001189	6 probable transmembrane helices predicted for CTL0225 by TMHMM2.0 at aa 10-29, 41-63, 67-86,107-129,139-161 and 174-196
471473001190	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
471473001191	Multiple antibiotic transporter [Intracellular trafficking and secretion]; Region: MarC; COG2095
471473001192	HMMPfam hit to PF01914, MarC family integral membrane protein, score 0.00012
471473001193	5 probable transmembrane helices predicted for CTL0226 by TMHMM2.0 at aa 47-66, 73-92, 112-134, 139-161 and 171-193
471473001194	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
471473001195	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
471473001196	dimer interface [polypeptide binding]; other site
471473001197	conserved gate region; other site
471473001198	putative PBP binding loops; other site
471473001199	ABC-ATPase subunit interface; other site
471473001200	NMT1/THI5 like; Region: NMT1; pfam09084
471473001201	6 probable transmembrane helices predicted for CTL0227 by TMHMM2.0 at aa 4-21, 59-81, 91-113,172-194,214-236 and 257-274
471473001202	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.6e-31
471473001203	The sequence has been checked and is believed to be correct
471473001204	HMMPfam hit to PF00206, Lyase, score 3.7e-132
471473001205	high affinity sulphate transporter 1; Region: sulP; TIGR00815
471473001206	Sulfate transporter N-terminal domain with GLY motif; Region: Sulfate_tra_GLY; pfam13792
471473001207	Sulfate transporter family; Region: Sulfate_transp; pfam00916
471473001208	Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042
471473001209	HMMPfam hit to PF01740, STAS domain, score 4.7e-19
471473001210	HMMPfam hit to PF00916, Sulfate transporter family,score 3.5e-57
471473001211	HMMPfam hit to PF00860, Permease family, score 0.0087
471473001212	10 probable transmembrane helices predicted for CTL0231 by TMHMM2.0 at aa 33-55, 60-82, 105-127,134-151,177-199, 206-223, 257-279, 325-347, 357-379 and 386-408
471473001213	Na+/H+ antiporter, NhaD family; Region: NhaD; TIGR00775
471473001214	Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]; Region: ArsB; COG1055
471473001215	11 probable transmembrane helices predicted for CTL0232 by TMHMM2.0 at aa 7-25, 30-49, 61-78,98-127,139-158, 173-195, 240-259, 279-301, 322-344, 359-381 and 394-413
471473001216	HMMPfam hit to PF03600, Citrate transporter, score 0.00094
471473001217	C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526
471473001218	C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526
471473001219	Interphotoreceptor retinoid-binding protein; serine protease family S41; Region: Peptidase_S41_IRBP; cd07563
471473001220	active site triad [active]
471473001221	HMMPfam hit to PF03572, Peptidase family S41, score 6.1e-44
471473001222	4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed; Region: ispH; PRK01045
471473001223	LytB protein; Region: LYTB; pfam02401
471473001224	HMMPfam hit to PF02401, LytB protein, score 2.9e-183
471473001225	Inorganic H+ pyrophosphatase; Region: H_PPase; pfam03030
471473001226	4 probable transmembrane helices predicted for CTL0236 by TMHMM2.0 at aa 316-338, 342-364, 385-407 and 422-441
471473001227	type III secretion low calcium response chaperone LcrH/SycD; Region: LcrH_SycD; TIGR02552
471473001228	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
471473001229	binding surface
471473001230	TPR motif; other site
471473001231	HMMPfam hit to PF07720, Tetratricopeptide repeat,score 1.5e-08
471473001232	site-specific tyrosine recombinase XerD; Reviewed; Region: xerD; PRK00283
471473001233	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
471473001234	active site
471473001235	DNA binding site [nucleotide binding]
471473001236	Int/Topo IB signature motif; other site
471473001237	HMMPfam hit to PF00589, Phage integrase family,score 1.9e-39
471473001238	HMMPfam hit to PF02899, Phage integrase, N-terminal SAM-like, score 1.1e-24
471473001239	glycogen branching enzyme; Provisional; Region: PRK05402
471473001240	N-terminal Early set domain associated with the catalytic domain of prokaryotic glycogen branching enzyme; Region: E_set_GBE_prok_N; cd02855
471473001241	Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme); Region: AmyAc_Glg_BE; cd11322
471473001242	active site
471473001243	catalytic site [active]
471473001244	Alpha amylase, C-terminal all-beta domain; Region: Alpha-amylase_C; pfam02806
471473001245	HMMPfam hit to PF02922, Isoamylase N-terminal domain, score 1.3e-33
471473001246	HMMPfam hit to PF00128, Alpha amylase, catalytic domain, score 8.5e-09
471473001247	Ulp1 protease family, C-terminal catalytic domain; Region: Peptidase_C48; cl17784
471473001248	1 probable transmembrane helix predicted for CTL0246 by TMHMM2.0 at aa 33-55
471473001249	Ulp1 protease family, C-terminal catalytic domain; Region: Peptidase_C48; cl17784
471473001250	1 probable transmembrane helix predicted for CTL0247 by TMHMM2.0 at aa 41-60
471473001251	Chlamydial polymorphic outer membrane protein repeat; Region: POMP_repeat; TIGR01376
471473001252	Chlamydia polymorphic membrane protein middle domain; Region: ChlamPMP_M; pfam07548
471473001253	Autotransporter beta-domain; Region: Autotransporter; pfam03797
471473001254	HMMPfam hit to PF03797, Autotransporter beta-domain,score 1.7e-38
471473001255	HMMPfam hit to PF07548, Chlamydia polymorphic membrane protei, score 3.7e-51
471473001256	PS00237 G-protein coupled receptors signature
471473001257	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.07
471473001258	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 1
471473001259	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.79
471473001260	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 3.7
471473001261	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 2.2
471473001262	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 12
471473001263	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 1
471473001264	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 9.6
471473001265	Chlamydia polymorphic membrane protein middle domain; Region: ChlamPMP_M; pfam07548
471473001266	Autotransporter beta-domain; Region: Autotransporter; pfam03797
471473001267	HMMPfam hit to PF03797, Autotransporter beta-domain,score 5.2e-41
471473001268	HMMPfam hit to PF07548, Chlamydia polymorphic membrane protei, score 3.1e-53
471473001269	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 5.8
471473001270	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 5.5
471473001271	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.19
471473001272	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.15
471473001273	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 4.8
471473001274	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 7.7
471473001275	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.27
471473001276	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 2.2
471473001277	Chlamydia polymorphic membrane protein middle domain; Region: ChlamPMP_M; pfam07548
471473001278	Autotransporter beta-domain; Region: Autotransporter; pfam03797
471473001279	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473001280	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.87
471473001281	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 1.6
471473001282	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 9.6
471473001283	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 13
471473001284	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.16
471473001285	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001286	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.18
471473001287	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.011
471473001288	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 2.8
471473001289	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 12
471473001290	HMMPfam hit to PF07548, Chlamydia polymorphic membrane protei, score 3.9e-53
471473001291	HMMPfam hit to PF03797, Autotransporter beta-domain,score 3.3e-40
471473001292	Chlamydial polymorphic outer membrane protein repeat; Region: POMP_repeat; TIGR01376
471473001293	Chlamydia polymorphic membrane protein middle domain; Region: ChlamPMP_M; pfam07548
471473001294	Autotransporter beta-domain; Region: Autotransporter; pfam03797
471473001295	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 2.1
471473001296	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 8.9
471473001297	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 1.1
471473001298	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.0032
471473001299	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.3
471473001300	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 50
471473001301	HMMPfam hit to PF07548, Chlamydia polymorphic membrane protei, score 9.4e-49
471473001302	HMMPfam hit to PF03797, Autotransporter beta-domain,score 4.4e-37
471473001303	PS00435 Peroxidases proximal heme-ligand signature
471473001304	Chlamydial polymorphic outer membrane protein repeat; Region: POMP_repeat; TIGR01376
471473001305	Chlamydial polymorphic outer membrane protein repeat; Region: POMP_repeat; TIGR01376
471473001306	Chlamydial polymorphic outer membrane protein repeat; Region: POMP_repeat; TIGR01376
471473001307	Chlamydia polymorphic membrane protein middle domain; Region: ChlamPMP_M; pfam07548
471473001308	Autotransporter beta-domain; Region: Autotransporter; pfam03797
471473001309	HMMPfam hit to PF03797, Autotransporter beta-domain,score 5.5e-40
471473001310	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001311	HMMPfam hit to PF07548, Chlamydia polymorphic membrane protei, score 1.7e-54
471473001312	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.54
471473001313	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.043
471473001314	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.086
471473001315	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.13
471473001316	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.075
471473001317	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.36
471473001318	Uncharacterized conserved protein [Function unknown]; Region: COG2155
471473001319	HMMPfam hit to PF04070, Domain of unknown function (DUF378), score 2.1e-43
471473001320	2 probable transmembrane helices predicted for CTL0256 by TMHMM2.0 at aa 5-27 and 42-64
471473001321	Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]; Region: GatC; COG0721
471473001322	HMMPfam hit to PF02686, Glu-tRNAGln amidotransferase C subunit, score 7e-32
471473001323	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154
471473001324	aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed; Region: gatA; PRK00012
471473001325	HMMPfam hit to PF01425, Amidase, score 4.6e-213
471473001326	PS00571 Amidases signature
471473001327	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]; Region: GatB; COG0064
471473001328	GatB/GatE catalytic domain; Region: GatB_N; pfam02934
471473001329	GatB domain; Region: GatB_Yqey; pfam02637
471473001330	HMMPfam hit to PF02934, PET112 family, N terminal region, score 3.8e-139
471473001331	PS01234 PET112 family signature
471473001332	HMMPfam hit to PF01162, PET112 family, C terminal region, score 1.2e-34
471473001333	HMMPfam hit to PF02637, GatB/Yqey domain, score 5.2e-54
471473001334	4 probable transmembrane helices predicted for CTL0260 by TMHMM2.0 at aa 32-54, 59-81, 96-118 and 123-145
471473001335	3 probable transmembrane helices predicted for CTL0261 by TMHMM2.0 at aa 47-69, 89-111 and 118-140
471473001336	Domain of unknown function (DUF3378); Region: DUF3378; pfam11858
471473001337	ribonuclease HIII; Region: rnhC; TIGR00716
471473001338	bacterial Ribonuclease HIII-like; Region: RNase_HII_bacteria_HIII_like; cd06590
471473001339	RNA/DNA hybrid binding site [nucleotide binding]; other site
471473001340	active site
471473001341	HMMPfam hit to PF01351, Ribonuclease HII, score 2.5e-09
471473001342	Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]; Region: COG1426
471473001343	Helix-turn-helix domain; Region: HTH_25; pfam13413
471473001344	1 probable transmembrane helix predicted for CTL0264 by TMHMM2.0 at aa 117-139
471473001345	lipid A biosynthesis lauroyl acyltransferase; Provisional; Region: PRK05906
471473001346	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984
471473001347	putative acyl-acceptor binding pocket; other site
471473001348	HMMPfam hit to PF03279, Bacterial lipid A biosynthesis acyltr, score 7.2e-155
471473001349	1 probable transmembrane helix predicted for CTL0265 by TMHMM2.0 at aa 12-34
471473001350	1 probable transmembrane helix predicted for CTL0266 by TMHMM2.0 at aa 13-35
471473001351	Uncharacterized conserved protein [Function unknown]; Region: COG1624
471473001352	DisA bacterial checkpoint controller nucleotide-binding; Region: DisA_N; pfam02457
471473001353	HMMPfam hit to PF02457, Domain of unknown function DUF147, score 1.8e-67
471473001354	3 probable transmembrane helices predicted for CTL0267 by TMHMM2.0 at aa 4-26, 28-50 and 65-87
471473001355	Bacterial Cytochrome Ubiquinol Oxidase; Region: Bac_Ubq_Cox; pfam01654
471473001356	HMMPfam hit to PF01654, Bacterial Cytochrome Ubiquinol Oxidase, score 8.8e-135
471473001357	9 probable transmembrane helices predicted for CTL0268 by TMHMM2.0 at aa 10-32, 52-74, 94-116,128-150,185-207, 220-239, 321-343, 356-378 and 406-428
471473001358	Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]; Region: AppB; COG1294
471473001359	cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003; cl12219
471473001360	8 probable transmembrane helices predicted for CTL0269 by TMHMM2.0 at aa 5-27, 66-88, 123-145,165-187,200-222, 237-259, 272-294 and 321-343
471473001361	HMMPfam hit to PF02322, Cytochrome oxidase subunit II, score 3.5e-183
471473001362	NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]; Region: COG1875
471473001363	PIN domain of bacterial Smg6-like homologs with PhoH-like ATPase domains; Region: PIN_PhoHL-ATPase; cd09883
471473001364	putative active site [active]
471473001365	PhoH-like protein; Region: PhoH; pfam02562
471473001366	HMMPfam hit to PF02562, PhoH-like protein, score 8.8e-23
471473001367	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001368	Bacterial SH3 domain homologues; Region: SH3b; smart00287
471473001369	Bacterial SH3 domain homologues; Region: SH3b; smart00287
471473001370	HMMPfam hit to PF08239, Bacterial SH3 domain, score 0.0031
471473001371	HMMPfam hit to PF08239, Bacterial SH3 domain, score 2.5e-08
471473001372	1 probable transmembrane helix predicted for CTL0273 by TMHMM2.0 at aa 25-47
471473001373	isoleucyl-tRNA synthetase; Reviewed; Region: ileS; PRK06039
471473001374	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
471473001375	HIGH motif; other site
471473001376	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
471473001377	active site
471473001378	KMSKS motif; other site
471473001379	Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_ABEc; cd07961
471473001380	tRNA binding surface [nucleotide binding]; other site
471473001381	anticodon binding site; other site
471473001382	HMMPfam hit to PF00133, tRNA synthetases class I (I,L, M and V), score 1.3e-279
471473001383	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
471473001384	HMMPfam hit to PF08264, Anticodon-binding domain,score 4e-58
471473001385	Signal peptidase I [Intracellular trafficking and secretion]; Region: LepB; COG0681
471473001386	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
471473001387	Catalytic site [active]
471473001388	signal peptidase I, bacterial type; Region: sigpep_I_bact; TIGR02227
471473001389	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
471473001390	2 probable transmembrane helices predicted for CTL0275 by TMHMM2.0 at aa 85-104 and 598-620
471473001391	PS00761 Signal peptidases I signature 3
471473001392	HMMPfam hit to PF00717, Peptidase S24-like, score 7.1e-09
471473001393	1 probable transmembrane helix predicted for CTL0276 by TMHMM2.0 at aa 12-29
471473001394	50S ribosomal protein L31 type B; Reviewed; Region: rpmE2; PRK01678
471473001395	HMMPfam hit to PF01197, Ribosomal protein L31,score 1.2e-11
471473001396	PS01143 Ribosomal protein L31 signature
471473001397	peptide chain release factor 1; Validated; Region: prfA; PRK00591
471473001398	PCRF domain; Region: PCRF; pfam03462
471473001399	RF-1 domain; Region: RF-1; pfam00472
471473001400	HMMPfam hit to PF03462, PCRF domain, score 4.4e-56
471473001401	HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase domain, score 1.4e-80
471473001402	PS00745 Prokaryotic-type class I peptide chain release factors signature
471473001403	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK09328
471473001404	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
471473001405	S-adenosylmethionine binding site [chemical binding]; other site
471473001406	HMMPfam hit to PF05175, Methyltransferase small domain, score 5.4e-08
471473001407	PS00262 Insulin family signature
471473001408	PS00092 N-6 Adenine-specific DNA methylases signature
471473001409	signal recognition particle protein; Provisional; Region: PRK10867
471473001410	SRP54-type protein, helical bundle domain; Region: SRP54_N; smart00963
471473001411	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
471473001412	P loop; other site
471473001413	GTP binding site [chemical binding]; other site
471473001414	Signal peptide binding domain; Region: SRP_SPB; pfam02978
471473001415	HMMPfam hit to PF02881, SRP54-type protein, helical bundle domain, score 3.2e-31
471473001416	HMMPfam hit to PF00448, SRP54-type protein, GTPase domain, score 6.5e-111
471473001417	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001418	HMMPfam hit to PF02978, Signal peptide binding domain, score 3.9e-49
471473001419	30S ribosomal protein S16; Provisional; Region: rpsP; PRK14522
471473001420	HMMPfam hit to PF00886, Ribosomal protein S16,score 6.4e-17
471473001421	tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed; Region: trmD; PRK01037
471473001422	tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]; Region: TrmD; COG0336
471473001423	HMMPfam hit to PF01746, tRNA (Guanine-1)-methyltransferase, score 9.3e-53
471473001424	ribosomal protein L19, bacterial type; Region: rplS_bact; TIGR01024
471473001425	HMMPfam hit to PF01245, Ribosomal protein L19,score 7.6e-45
471473001426	bacterial Ribonuclease HII-like; Region: RNase_HII_bacteria_HII_like; cd07182
471473001427	RNA/DNA hybrid binding site [nucleotide binding]; other site
471473001428	active site
471473001429	HMMPfam hit to PF01351, Ribonuclease HII, score 2.4e-64
471473001430	Guanylate kinase [Nucleotide transport and metabolism]; Region: Gmk; COG0194
471473001431	Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine...; Region: GMPK; cd00071
471473001432	catalytic site [active]
471473001433	G-X2-G-X-G-K; other site
471473001434	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001435	PS00856 Guanylate kinase signature
471473001436	HMMPfam hit to PF00625, Guanylate kinase, score 7.4e-30
471473001437	methionyl-tRNA synthetase; Reviewed; Region: PRK12268
471473001438	catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814
471473001439	active site
471473001440	HIGH motif; other site
471473001441	KMSKS motif; other site
471473001442	Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957
471473001443	tRNA binding surface [nucleotide binding]; other site
471473001444	anticodon binding site; other site
471473001445	helicase, putative, RecD/TraA family; Region: recD_rel; TIGR01448
471473001446	AAA domain; Region: AAA_30; pfam13604
471473001447	Family description; Region: UvrD_C_2; pfam13538
471473001448	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001449	Multidrug resistance efflux transporter; Region: EmrE; pfam13536
471473001450	10 probable transmembrane helices predicted for CTL0289 by TMHMM2.0 at aa 5-27, 31-48, 60-82,86-108,115-137, 147-169, 190-212, 227-246, 253-275 and 285-304
471473001451	Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP); Region: GATase1_ScBLP_like; cd03144
471473001452	conserved cys residue [active]
471473001453	bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional; Region: metL; PRK09466
471473001454	2 probable transmembrane helices predicted for CTL0291 by TMHMM2.0 at aa 12-34 and 38-57
471473001455	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473001456	The sequence has been checked and is believed to be correct
471473001457	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
471473001458	1 probable transmembrane helix predicted for CTL0293 by TMHMM2.0 at aa 21-38
471473001459	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
471473001460	trimer interface [polypeptide binding]; other site
471473001461	active site
471473001462	Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]; Region: RuvB; COG2255
471473001463	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473001464	Walker A motif; other site
471473001465	ATP binding site [chemical binding]; other site
471473001466	Walker B motif; other site
471473001467	arginine finger; other site
471473001468	Holliday junction DNA helicase ruvB C-terminus; Region: RuvB_C; pfam05491
471473001469	HMMPfam hit to PF05496, Holliday junction DNA helicase ruvB N-termin, score 2.1e-08
471473001470	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 1.7e-37
471473001471	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 2.4e-05
471473001472	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001473	HMMPfam hit to PF05491, Holliday junction DNA helicase ruvB C-termin, score 1.9e-49
471473001474	PS00070 Aldehyde dehydrogenases cysteine active site
471473001475	Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]; Region: PulA; COG1523
471473001476	N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase); Region: E_set_GDE_Isoamylase_N; cd02856
471473001477	Alpha amylase catalytic domain found in glycogen debranching enzymes; Region: AmyAc_Glg_debranch; cd11326
471473001478	active site
471473001479	catalytic site [active]
471473001480	HMMPfam hit to PF00128, Alpha amylase, catalytic domain, score 8.6e-16
471473001481	HMMPfam hit to PF02922, Isoamylase N-terminal domain, score 1.8e-18
471473001482	Tir chaperone protein (CesT) family; Region: CesT; pfam05932
471473001483	HMMPfam hit to PF05932, Tir chaperone protein (CesT), score 1.2e-37
471473001484	Single-stranded DNA-binding protein [DNA replication, recombination, and repair]; Region: Ssb; COG0629
471473001485	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
471473001486	dimer interface [polypeptide binding]; other site
471473001487	ssDNA binding site [nucleotide binding]; other site
471473001488	tetramer (dimer of dimers) interface [polypeptide binding]; other site
471473001489	HMMPfam hit to PF00436, Single-strand binding protein family, score 6.1e-10
471473001490	multifunctional aminopeptidase A; Provisional; Region: PRK00913
471473001491	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
471473001492	interface (dimer of trimers) [polypeptide binding]; other site
471473001493	Substrate-binding/catalytic site; other site
471473001494	Zn-binding sites [ion binding]; other site
471473001495	HMMPfam hit to PF02789, Cytosol aminopeptidase family, N-term, score 2.3e-26
471473001496	HMMPfam hit to PF00883, Cytosol aminopeptidase family, cataly, score 1.8e-146
471473001497	Histone H1-like nucleoprotein HC2; Region: HC2; pfam07382
471473001498	HMMPfam hit to PF07382, Histone H1-like nucleoprotein HC2, score 4e-99
471473001499	hypothetical protein; Provisional; Region: PRK05907
471473001500	HMMPfam hit to PF06144, DNA polymerase III, delta subunit, score 0.00038
471473001501	Predicted methyltransferases [General function prediction only]; Region: COG0313
471473001502	Uncharacterized subfamily of the tetrapyrrole methylase family similar to ribosomal RNA small subunit methyltransferase I (RsmI); Region: RsmI_like; cd11649
471473001503	putative SAM binding site [chemical binding]; other site
471473001504	homodimer interface [polypeptide binding]; other site
471473001505	PS00070 Aldehyde dehydrogenases cysteine active site
471473001506	coproporphyrinogen III oxidase; Provisional; Region: PRK06294
471473001507	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
471473001508	FeS/SAM binding site; other site
471473001509	HemN C-terminal domain; Region: HemN_C; pfam06969
471473001510	HMMPfam hit to PF06969, HemN C-terminal region,score 3e-24
471473001511	HMMPfam hit to PF04055, Radical SAM superfamily,score 2.6e-28
471473001512	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]; Region: SucA; COG0567
471473001513	Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of...; Region: TPP_E1_OGDC_like; cd02016
471473001514	TPP-binding site [chemical binding]; other site
471473001515	Transketolase, pyrimidine binding domain; Region: Transket_pyr; pfam02779
471473001516	HMMPfam hit to PF00676, Dehydrogenase E1 component,score 1.8e-43
471473001517	HMMPfam hit to PF02779, Transketolase, pyridine binding domain, score 2.6e-58
471473001518	dihydrolipoamide succinyltransferase; Validated; Region: PRK05704
471473001519	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
471473001520	E3 interaction surface; other site
471473001521	lipoyl attachment site [posttranslational modification]; other site
471473001522	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
471473001523	HMMPfam hit to PF00364, Biotin-requiring enzyme,score 3.4e-13
471473001524	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site
471473001525	HMMPfam hit to PF00198, 2-oxoacid dehydrogenases acyltransferas, score 4e-135
471473001526	Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]; Region: yfiH; COG1496
471473001527	uncharacterized protein, YfiH family; Region: TIGR00726
471473001528	HMMPfam hit to PF02578, Uncharacterised ACR, YfiH family COG1496, score 1.1e-115
471473001529	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated; Region: PRK00694
471473001530	1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]; Region: gcpE; COG0821
471473001531	HMMPfam hit to PF04551, GcpE protein, score 4.3e-59
471473001532	Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly...; Region: Macro; cd02749
471473001533	ADP-ribose binding site [chemical binding]; other site
471473001534	2 probable transmembrane helices predicted for CTL0314 by TMHMM2.0 at aa 26-48 and 53-75
471473001535	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
471473001536	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
471473001537	catalytic loop [active]
471473001538	iron binding site [ion binding]; other site
471473001539	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 8.1e-13
471473001540	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature
471473001541	type III secretion system protein; Validated; Region: PRK05910
471473001542	FHIPEP family; Region: FHIPEP; pfam00771
471473001543	7 probable transmembrane helices predicted for CTL0316 by TMHMM2.0 at aa 33-52, 56-78, 90-112,127-149,218-237, 252-274 and 294-316
471473001544	HMMPfam hit to PF00771, FHIPEP family, score 2e-230
471473001545	RNA polymerase sigma factor sigma-28; Reviewed; Region: PRK05911
471473001546	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
471473001547	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
471473001548	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
471473001549	DNA binding residues [nucleotide binding]
471473001550	HMMPfam hit to PF04542, Sigma-70 region, score 2.5e-21
471473001551	HMMPfam hit to PF04539, Sigma-70 region, score 9.9e-07
471473001552	HMMPfam hit to PF08281, Sigma-70, region, score 6.9e-10
471473001553	HMMPfam hit to PF04545, Sigma-70, region, score 7.2e-21
471473001554	tyrosyl-tRNA synthetase; Validated; Region: PRK05912
471473001555	catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805
471473001556	active site
471473001557	HIGH motif; other site
471473001558	dimer interface [polypeptide binding]; other site
471473001559	KMSKS motif; other site
471473001560	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
471473001561	RNA binding surface [nucleotide binding]; other site
471473001562	HMMPfam hit to PF00579, tRNA synthetases class I (W and Y), score 1.3e-120
471473001563	HMMPfam hit to PF01479, S4 domain, score 3.6e-08
471473001564	6-phosphogluconate dehydrogenase (decarboxylating); Region: gnd; TIGR00873
471473001565	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
471473001566	6-phosphogluconate dehydrogenase, C-terminal domain; Region: 6PGD; pfam00393
471473001567	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 7.9e-88
471473001568	HMMPfam hit to PF00393, 6-phosphogluconate dehydrogenase, C-ter, score 8.7e-180
471473001569	PS00461 6-phosphogluconate dehydrogenase signature
471473001570	GTP-binding protein LepA; Provisional; Region: PRK05433
471473001571	LepA also known as Elongation Factor 4 (EF4); Region: LepA; cd01890
471473001572	G1 box; other site
471473001573	putative GEF interaction site [polypeptide binding]; other site
471473001574	GTP/Mg2+ binding site [chemical binding]; other site
471473001575	Switch I region; other site
471473001576	G2 box; other site
471473001577	G3 box; other site
471473001578	Switch II region; other site
471473001579	G4 box; other site
471473001580	G5 box; other site
471473001581	lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu...; Region: lepA_II; cd03699
471473001582	lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane.   LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709
471473001583	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
471473001584	HMMPfam hit to PF06421, GTP-binding protein LepA C-terminus, score 1e-73
471473001585	HMMPfam hit to PF00679, Elongation factor G C-terminus, score 8.7e-33
471473001586	HMMPfam hit to PF03144, Elongation factor Tu domain,score 5.7e-13
471473001587	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 6.9e-71
471473001588	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001589	ADP/ATP carrier protein family; Region: AAA; TIGR00769
471473001590	HMMPfam hit to PF03219, TLC ATP/ADP transporter,score 0
471473001591	11 probable transmembrane helices predicted for CTL0321 by TMHMM2.0 at aa 27-44, 59-81, 93-115,149-171,184-206, 221-243, 284-306, 321-343, 350-372,382-401 and 456-478
471473001592	PS00430 TonB-dependent receptor proteins signature 1
471473001593	ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]; Region: LraI; COG0803
471473001594	Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site is formed in the interface between...; Region: TroA-like; cl00262
471473001595	intersubunit interface [polypeptide binding]; other site
471473001596	HMMPfam hit to PF01297, Periplasmic solute binding protein family, score 4.8e-129
471473001597	ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]; Region: ZnuC; COG1121
471473001598	ATP-binding cassette domain of the metal-type transporters; Region: ABC_Metallic_Cations; cd03235
471473001599	HMMPfam hit to PF00005, ABC transporter, score 6.7e-46
471473001600	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001601	PS00211 ABC transporters family signature
471473001602	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
471473001603	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
471473001604	ABC-ATPase subunit  interface; other site
471473001605	dimer interface [polypeptide binding]; other site
471473001606	putative PBP binding regions; other site
471473001607	Mn-dependent transcriptional regulator [Transcription]; Region: TroR; COG1321
471473001608	Iron dependent repressor, metal binding and dimerisation domain; Region: Fe_dep_repr_C; pfam02742
471473001609	HMMPfam hit to PF00950, ABC 3 transport family,score 1.2e-13
471473001610	7 probable transmembrane helices predicted for CTL0325 by TMHMM2.0 at aa 12-34, 68-90, 102-120,143-165,190-212, 232-254 and 275-297
471473001611	HMMPfam hit to PF02742, Iron dependent repressor,metal binding, score 2.2e-14
471473001612	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
471473001613	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
471473001614	ABC-ATPase subunit  interface; other site
471473001615	dimer interface [polypeptide binding]; other site
471473001616	putative PBP binding regions; other site
471473001617	10 probable transmembrane helices predicted for CTL0326 by TMHMM2.0 at aa 5-24, 39-61, 68-90,95-114,127-144, 167-189, 202-224, 228-250, 255-277 and 287-306
471473001618	HMMPfam hit to PF00950, ABC 3 transport family,score 2.2e-11
471473001619	1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]; Region: Dxr; COG0743
471473001620	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Region: DXP_reductoisom; pfam02670
471473001621	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; Region: DXP_redisom_C; pfam08436
471473001622	DXP reductoisomerase C-terminal domain; Region: DXPR_C; pfam13288
471473001623	HMMPfam hit to PF02670, 1-deoxy-D-xylulose 5-phosphate reduct, score 5.7e-59
471473001624	HMMPfam hit to PF08436, 1-deoxy-D-xylulose 5-phosphate reduct, score 6.3e-57
471473001625	RIP metalloprotease RseP; Region: TIGR00054
471473001626	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
471473001627	active site
471473001628	Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]; Region: COG0750
471473001629	Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic...; Region: S2P-M50; cl10020
471473001630	putative substrate binding region [chemical binding]; other site
471473001631	4 probable transmembrane helices predicted for CTL0328 by TMHMM2.0 at aa 4-26, 103-125, 558-580 and 593-610
471473001632	HMMPfam hit to PF02163, Peptidase family M50, score 1e-80
471473001633	PS00142 Neutral zinc metallopeptidases,zinc-binding region signature
471473001634	PS00136 Serine proteases, subtilase family,aspartic acid active site
471473001635	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
471473001636	Putative serine esterase (DUF676); Region: DUF676; pfam05057
471473001637	recF protein; Region: recf; TIGR00611
471473001638	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
471473001639	Walker A/P-loop; other site
471473001640	ATP binding site [chemical binding]; other site
471473001641	Q-loop/lid; other site
471473001642	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
471473001643	ABC transporter signature motif; other site
471473001644	Walker B; other site
471473001645	HMMPfam hit to PF02463, RecF/RecN/SMC N terminal domain, score 2.3e-10
471473001646	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001647	DNA polymerase III subunit beta; Validated; Region: PRK05643
471473001648	Beta clamp domain.  The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria.  The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cd00140
471473001649	putative DNA binding surface [nucleotide binding]; other site
471473001650	dimer interface [polypeptide binding]; other site
471473001651	beta-clamp/clamp loader binding surface; other site
471473001652	beta-clamp/translesion DNA polymerase binding surface; other site
471473001653	HMMPfam hit to PF02768, DNA polymerase III beta subunit, C-te, score 9.3e-08
471473001654	HMMPfam hit to PF02767, DNA polymerase III beta subunit, cent, score 3e-23
471473001655	HMMPfam hit to PF00712, DNA polymerase III beta subunit, N-te, score 5e-21
471473001656	Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294
471473001657	SmpB-tmRNA interface; other site
471473001658	HMMPfam hit to PF01668, SmpB protein, score 1e-26
471473001659	PS01317 Protein smpB signature
471473001660	Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]; Region: ApbE; COG1477
471473001661	ApbE family; Region: ApbE; pfam02424
471473001662	HMMPfam hit to PF02424, ApbE family, score 3.4e-165
471473001663	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473001664	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional; Region: PRK14181
471473001665	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763
471473001666	NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080
471473001667	homodimer interface [polypeptide binding]; other site
471473001668	NADP binding site [chemical binding]; other site
471473001669	substrate binding site [chemical binding]; other site
471473001670	HMMPfam hit to PF02882, Tetrahydrofolate dehydrogenase/cyclohyd, score 3.5e-102
471473001671	PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2
471473001672	HMMPfam hit to PF00763, Tetrahydrofolate dehydrogenase/cyclohyd, score 1.5e-63
471473001673	2 probable transmembrane helices predicted for CTL0335 by TMHMM2.0 at aa 20-53 and 65-87
471473001674	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001675	2 probable transmembrane helices predicted for CTL0337 by TMHMM2.0 at aa 47-66 and 78-100
471473001676	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
471473001677	PLD-like domain; Region: PLDc_2; pfam13091
471473001678	putative active site [active]
471473001679	catalytic site [active]
471473001680	Catalytic domain of EDTA-resistant nuclease Nuc, vertebrate phospholipase D6, and similar proteins; Region: PLDc_Nuc_like; cd09116
471473001681	PLD-like domain; Region: PLDc_2; pfam13091
471473001682	putative active site [active]
471473001683	catalytic site [active]
471473001684	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.41
471473001685	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.013
471473001686	1 probable transmembrane helix predicted for CTL0339 by TMHMM2.0 at aa 7-29
471473001687	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Region: UbiD; cl00311
471473001688	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Region: UbiD; cl00311
471473001689	HMMPfam hit to PF01977,3-octaprenyl-4-hydroxybenzoate carboxy-lyase, score 1.9e-220
471473001690	50S ribosomal protein L28; Reviewed; Region: rpmB; PRK00359
471473001691	HMMPfam hit to PF00830, Ribosomal L28 family, score 4.4e-12
471473001692	4-alpha-glucanotransferase; Region: Glyco_hydro_77; pfam02446
471473001693	HMMPfam hit to PF02446,4-alpha-glucanotransferase,score 2.8e-281
471473001694	Tir chaperone protein (CesT) family; Region: CesT; pfam05932
471473001695	HMMPfam hit to PF05932, Tir chaperone protein (CesT), score 1.1e-36
471473001696	HrpJ-like domain; Region: HrpJ; cl15454
471473001697	Type III secretory pathway, component EscV [Intracellular trafficking and secretion]; Region: EscV; COG4789
471473001698	FHIPEP family; Region: FHIPEP; pfam00771
471473001699	HMMPfam hit to PF00771, FHIPEP family, score 0
471473001700	6 probable transmembrane helices predicted for CTL0345 by TMHMM2.0 at aa 27-44, 57-79, 119-141,208-230,245-267 and 309-331
471473001701	type III secretion system protein; Validated; Region: PRK06298
471473001702	conjugative relaxase domain, TrwC/TraI family; Region: relax_trwC; TIGR02686
471473001703	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257; cl15822
471473001704	HMMPfam hit to PF01312, FlhB HrpN YscU SpaS Family,score 2.2e-171
471473001705	4 probable transmembrane helices predicted for CTL0346 by TMHMM2.0 at aa 38-60, 80-102, 136-158 and 183-205
471473001706	GTP-binding protein YchF; Reviewed; Region: PRK09601
471473001707	YchF GTPase; Region: YchF; cd01900
471473001708	G1 box; other site
471473001709	GTP/Mg2+ binding site [chemical binding]; other site
471473001710	Switch I region; other site
471473001711	G2 box; other site
471473001712	Switch II region; other site
471473001713	G3 box; other site
471473001714	G4 box; other site
471473001715	G5 box; other site
471473001716	TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the...; Region: TGS_YchF_C; cd04867
471473001717	PS00443 Glutamine amidotransferases class-II active site
471473001718	HMMPfam hit to PF01926, GTPase of unknown function,score 8.9e-29
471473001719	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001720	HMMPfam hit to PF06071, Protein of unknown function (DUF933), score 1.2e-48
471473001721	bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed; Region: PRK05627
471473001722	FAD synthetase, N-terminal domain of the bifunctional enzyme; Region: FAD_synthetase_N; cd02064
471473001723	active site
471473001724	Riboflavin kinase; Region: Flavokinase; smart00904
471473001725	HMMPfam hit to PF01687, Riboflavin kinase, score 4.8e-31
471473001726	HMMPfam hit to PF06574, FAD synthetase, score 1.9e-62
471473001727	tRNA pseudouridine synthase B; Provisional; Region: truB; PRK00989
471473001728	Pseudouridine synthase, Escherichia coli TruB like; Region: PseudoU_synth_EcTruB; cd02573
471473001729	RNA binding site [nucleotide binding]; other site
471473001730	active site
471473001731	HMMPfam hit to PF01509, TruB family pseudouridylate synthase (N term, score 8.2e-49
471473001732	ribosome-binding factor A; Validated; Region: rbfA; PRK00521
471473001733	HMMPfam hit to PF02033, Ribosome-binding factor A,score 1.8e-12
471473001734	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
471473001735	Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]; Region: InfB; COG0532
471473001736	Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887
471473001737	G1 box; other site
471473001738	putative GEF interaction site [polypeptide binding]; other site
471473001739	GTP/Mg2+ binding site [chemical binding]; other site
471473001740	Switch I region; other site
471473001741	G2 box; other site
471473001742	G3 box; other site
471473001743	Switch II region; other site
471473001744	G4 box; other site
471473001745	G5 box; other site
471473001746	This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell; Region: IF2_mtIF2_II; cd03702
471473001747	Translation-initiation factor 2; Region: IF-2; pfam11987
471473001748	mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor...; Region: mtIF2_IVc; cd03692
471473001749	HMMPfam hit to PF03144, Elongation factor Tu domain,score 1.9e-09
471473001750	PS01176 Initiation factor 2 signature
471473001751	HMMPfam hit to PF03144, Elongation factor Tu domain,score 1.2e-10
471473001752	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 5.7e-46
471473001753	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001754	HMMPfam hit to PF04760, Translation initiation factor IF-2, N-ter, score 1.8e-11
471473001755	transcription termination factor NusA; Region: NusA; TIGR01953
471473001756	NusA N-terminal domain; Region: NusA_N; pfam08529
471473001757	S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three...; Region: S1_NusA; cd04455
471473001758	RNA binding site [nucleotide binding]; other site
471473001759	homodimer interface [polypeptide binding]; other site
471473001760	NusA-like KH domain; Region: KH_5; pfam13184
471473001761	NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134
471473001762	G-X-X-G motif; other site
471473001763	HMMPfam hit to PF00575, S1 RNA binding domain,score 4.8e-07
471473001764	HMMPfam hit to PF08529, NusA N-terminal domain,score 4.5e-62
471473001765	30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299
471473001766	S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec1_hs1; cd05687
471473001767	RNA binding site [nucleotide binding]; other site
471473001768	S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec2_hs2; cd04465
471473001769	RNA binding site [nucleotide binding]; other site
471473001770	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
471473001771	RNA binding site [nucleotide binding]; other site
471473001772	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
471473001773	RNA binding site [nucleotide binding]; other site
471473001774	S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec5; cd05690
471473001775	RNA binding site [nucleotide binding]; other site
471473001776	S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase  is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA; Region: S1_PNPase; cd04472
471473001777	RNA binding site [nucleotide binding]; other site
471473001778	domain interface; other site
471473001779	HMMPfam hit to PF00575, S1 RNA binding domain,score 1.2e-22
471473001780	HMMPfam hit to PF00575, S1 RNA binding domain,score 8.7e-25
471473001781	HMMPfam hit to PF00575, S1 RNA binding domain,score 1.9e-25
471473001782	HMMPfam hit to PF00575, S1 RNA binding domain,score 8.9e-22
471473001783	HMMPfam hit to PF00575, S1 RNA binding domain,score 1.6e-16
471473001784	HMMPfam hit to PF00575, S1 RNA binding domain,score 5.3e-17
471473001785	thioredoxin-disulfide reductase; Region: TRX_reduct; TIGR01292
471473001786	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
471473001787	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
471473001788	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 2.7e-53
471473001789	PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site
471473001790	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 9.2e-25
471473001791	4'-phosphopantetheinyl transferase; Provisional; Region: acpS; PRK00070
471473001792	HMMPfam hit to PF01648, 4'-phosphopantetheinyl transferase superfami, score 4e-27
471473001793	2 probable transmembrane helices predicted for CTL0356 by TMHMM2.0 at aa 5-22 and 32-54
471473001794	Flagellar biogenesis protein [Cell motility and secretion]; Region: FliO; COG3190
471473001795	1 probable transmembrane helix predicted for CTL0357 by TMHMM2.0 at aa 43-65
471473001796	Predicted hydrolases of the HAD superfamily [General function prediction only]; Region: Cof; COG0561
471473001797	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cl17915
471473001798	active site
471473001799	motif I; other site
471473001800	motif II; other site
471473001801	HMMPfam hit to PF08282, haloacid dehalogenase-like hydrolase, score 4e-07
471473001802	enoyl-[acyl-carrier-protein] reductase; Region: PLN02730
471473001803	Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; Region: ENR_SDR; cd05372
471473001804	NAD binding site [chemical binding]; other site
471473001805	homotetramer interface [polypeptide binding]; other site
471473001806	homodimer interface [polypeptide binding]; other site
471473001807	substrate binding site [chemical binding]; other site
471473001808	active site
471473001809	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
471473001810	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
471473001811	RNA binding surface [nucleotide binding]; other site
471473001812	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
471473001813	active site
471473001814	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 2.7e-52
471473001815	PS01129 Rlu family of pseudouridine synthase signature
471473001816	HMMPfam hit to PF01479, S4 domain, score 5.4e-05
471473001817	A/G-specific adenine glycosylase; Region: mutY; TIGR01084
471473001818	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
471473001819	minor groove reading motif; other site
471473001820	helix-hairpin-helix signature motif; other site
471473001821	substrate binding pocket [chemical binding]; other site
471473001822	active site
471473001823	iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3); Region: FES; smart00525
471473001824	DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread  A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important...; Region: DNA_Glycosylase_C; cd03431
471473001825	DNA binding and oxoG recognition site [nucleotide binding]
471473001826	HMMPfam hit to PF00730, HhH-GPD superfamily base excision DNA repair, score 4.4e-22
471473001827	HMMPfam hit to PF00633, Helix-hairpin-helix motif,score 2.6e-05
471473001828	Uncharacterized conserved protein [Function unknown]; Region: COG0327
471473001829	NIF3 (NGG1p interacting factor 3); Region: NIF3; pfam01784
471473001830	HMMPfam hit to PF01784, NIF3 (NGG1p interacting factor 3), score 2.5e-89
471473001831	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
471473001832	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
471473001833	ring oligomerisation interface [polypeptide binding]; other site
471473001834	ATP/Mg binding site [chemical binding]; other site
471473001835	stacking interactions; other site
471473001836	hinge regions; other site
471473001837	HMMPfam hit to PF00118, TCP-1/cpn60 chaperonin family, score 8.4e-187
471473001838	PS00296 Chaperonins cpn60 signature
471473001839	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
471473001840	oligomerisation interface [polypeptide binding]; other site
471473001841	mobile loop; other site
471473001842	roof hairpin; other site
471473001843	HMMPfam hit to PF00166, Chaperonin 10 Kd subunit,score 5.2e-41
471473001844	PS00681 Chaperonins cpn10 signature
471473001845	Oligoendopeptidase F [Amino acid transport and metabolism]; Region: COG1164
471473001846	Peptidase family M3B Oligopeptidase F (PepF); Region: M3B_PepF_3; cd09608
471473001847	active site
471473001848	Zn binding site [ion binding]; other site
471473001849	HMMPfam hit to PF01432, Peptidase family M3, score 2.5e-165
471473001850	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001851	HMMPfam hit to PF08439, Oligopeptidase F, score 4.8e-18
471473001852	ATP-dependent chaperone ClpB; Region: chaperone_ClpB; TIGR03346
471473001853	Clp amino terminal domain; Region: Clp_N; pfam02861
471473001854	Clp amino terminal domain; Region: Clp_N; pfam02861
471473001855	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473001856	Walker A motif; other site
471473001857	ATP binding site [chemical binding]; other site
471473001858	Walker B motif; other site
471473001859	arginine finger; other site
471473001860	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473001861	Walker A motif; other site
471473001862	ATP binding site [chemical binding]; other site
471473001863	Walker B motif; other site
471473001864	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
471473001865	HMMPfam hit to PF02861, Clp amino terminal domain,score 3e-10
471473001866	HMMPfam hit to PF02861, Clp amino terminal domain,score 6.6e-10
471473001867	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 1.4e-10
471473001868	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001869	PS00870 Chaperonins clpA/B signature 1
471473001870	HMMPfam hit to PF07724, ATPase family associated with various cellul, score 1.6e-102
471473001871	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 3.2e-05
471473001872	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001873	Uncharacterized conserved protein [Function unknown]; Region: COG2912
471473001874	Transglutaminase-like superfamily; Region: Transglut_core2; pfam13369
471473001875	2 probable transmembrane helices predicted for CTL0370 by TMHMM2.0 at aa 51-73 and 83-105
471473001876	2 probable transmembrane helices predicted for CTL0371 by TMHMM2.0 at aa 39-61 and 65-87
471473001877	PS00044 Bacterial regulatory proteins, lysR family signature
471473001878	2 probable transmembrane helices predicted for CTL0372 by TMHMM2.0 at aa 39-60 and 70-92
471473001879	2 probable transmembrane helices predicted for CTL0373 by TMHMM2.0 at aa 34-56 and 66-88
471473001880	IncA protein; Region: IncA; pfam04156
471473001881	HMMPfam hit to PF04156, IncA protein, score 1.4e-24
471473001882	2 probable transmembrane helices predicted for CTL0374 by TMHMM2.0 at aa 12-34 and 38-57
471473001883	PS00615 C-type lectin domain signature
471473001884	Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose...; Region: RPE; cd00429
471473001885	ribulose-phosphate 3-epimerase; Region: rpe; TIGR01163
471473001886	substrate binding site [chemical binding]; other site
471473001887	hexamer interface [polypeptide binding]; other site
471473001888	metal binding site [ion binding]; metal-binding site
471473001889	HMMPfam hit to PF00834, Ribulose-phosphate 3 epimerase family, score 3.6e-82
471473001890	PS01085 Ribulose-phosphate 3-epimerase family signature 1
471473001891	elongation factor P; Provisional; Region: PRK12426
471473001892	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
471473001893	RNA binding site [nucleotide binding]; other site
471473001894	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
471473001895	RNA binding site [nucleotide binding]; other site
471473001896	HMMPfam hit to PF01132, Elongation factor P (EF-P) OB domain, score 0.00038
471473001897	PS01275 Elongation factor P signature
471473001898	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated; Region: PRK06302
471473001899	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
471473001900	carboxyltransferase (CT) interaction site; other site
471473001901	biotinylation site [posttranslational modification]; other site
471473001902	HMMPfam hit to PF00364, Biotin-requiring enzyme,score 1.3e-27
471473001903	acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591
471473001904	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
471473001905	ATP-grasp domain; Region: ATP-grasp_4; cl17255
471473001906	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; smart00878
471473001907	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 4.2e-44
471473001908	HMMPfam hit to PF08443, RimK-like ATP-grasp domain,score 7.9e-05
471473001909	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 1.7e-94
471473001910	HMMPfam hit to PF02222, ATP-grasp domain, score 0.00089
471473001911	PS00867 Carbamoyl-phosphate synthase subdomain signature 2
471473001912	HMMPfam hit to PF02785, Biotin carboxylase C-terminal domain, score 6e-65
471473001913	Ribosomal protein L13.  Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392
471473001914	23S rRNA interface [nucleotide binding]; other site
471473001915	L3 interface [polypeptide binding]; other site
471473001916	HMMPfam hit to PF00572, Ribosomal protein L13,score 5.5e-49
471473001917	PS00783 Ribosomal protein L13 signature
471473001918	PS00063 Aldo/keto reductase family putative active site signature
471473001919	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature
471473001920	30S ribosomal protein S9; Reviewed; Region: rpsI; PRK00132
471473001921	HMMPfam hit to PF00380, Ribosomal protein S9/S16,score 5.7e-48
471473001922	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
471473001923	NlpC/P60 family; Region: NLPC_P60; cl17555
471473001924	HMMPfam hit to PF00877, NlpC/P60 family, score 1.5e-08
471473001925	adenylate kinase; Reviewed; Region: adk; PRK00279
471473001926	Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428
471473001927	AMP-binding site [chemical binding]; other site
471473001928	ATP-AMP (Ap5A)-binding site [chemical binding]; other site
471473001929	HMMPfam hit to PF00406, Adenylate kinase, score 5.5e-42
471473001930	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
471473001931	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
471473001932	dimer interface [polypeptide binding]; other site
471473001933	conserved gate region; other site
471473001934	putative PBP binding loops; other site
471473001935	ABC-ATPase subunit interface; other site
471473001936	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 4.5e-17
471473001937	4 probable transmembrane helices predicted for CTL0384 by TMHMM2.0 at aa 15-37, 58-80, 84-103 and 187-206
471473001938	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign
471473001939	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
471473001940	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
471473001941	Walker A/P-loop; other site
471473001942	ATP binding site [chemical binding]; other site
471473001943	Q-loop/lid; other site
471473001944	ABC transporter signature motif; other site
471473001945	Walker B; other site
471473001946	D-loop; other site
471473001947	H-loop/switch region; other site
471473001948	HMMPfam hit to PF00005, ABC transporter, score 7.7e-54
471473001949	PS00017 ATP/GTP-binding site motif A (P-loop)
471473001950	PS00211 ABC transporters family signature
471473001951	1 probable transmembrane helix predicted for CTL0386 by TMHMM2.0 at aa 9-31
471473001952	Ribonuclease BN family enzyme [Replication, recombination, and repair]; Region: Rbn; COG1295
471473001953	HMMPfam hit to PF03631, Ribonuclease BN-like family,score 1.5e-05
471473001954	6 probable transmembrane helices predicted for CTL0387 by TMHMM2.0 at aa 42-64, 100-122, 143-165,185-207,219-241 and 256-278
471473001955	Methyltransferase domain; Region: Methyltransf_23; pfam13489
471473001956	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
471473001957	S-adenosylmethionine binding site [chemical binding]; other site
471473001958	HMMPfam hit to PF08241, Methyltransferase domain,score 5.1e-12
471473001959	HMMPfam hit to PF08242, Methyltransferase domain,score 1.7e-14
471473001960	PS01186 EGF-like domain signature 2
471473001961	2 probable transmembrane helices predicted for CTL0389 by TMHMM2.0 at aa 31-53 and 80-98
471473001962	4 probable transmembrane helices predicted for CTL0390 by TMHMM2.0 at aa 20-42, 121-143, 211-233 and 243-265
471473001963	Phospholipase/Carboxylesterase; Region: Abhydrolase_2; pfam02230
471473001964	Serine hydrolase (FSH1); Region: FSH1; pfam03959
471473001965	HMMPfam hit to PF02230,Phospholipase/Carboxylesterase, score 2.2e-103
471473001966	Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]; Region: SUA5; COG0009
471473001967	HMMPfam hit to PF01300, yrdC domain, score 1.9e-31
471473001968	Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]; Region: COG2355
471473001969	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
471473001970	active site
471473001971	HMMPfam hit to PF01244, Membrane dipeptidase (Peptidase family, score 2.3e-13
471473001972	The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like; cl01709
471473001973	Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496
471473001974	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 1.6e-66
471473001975	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473001976	conserved hypothetical integral membrane protein; Region: TIGR00697
471473001977	7 probable transmembrane helices predicted for CTL0395 by TMHMM2.0 at aa 5-22, 29-51, 55-77,84-103,127-149, 165-187 and 192-214
471473001978	HMMPfam hit to PF02592, Uncharacterized ACR, YhhQ family COG1738, score 2.9e-67
471473001979	Predicted metal-binding protein related to the C-terminal domain of SecA [General function prediction only]; Region: COG3318
471473001980	SEC-C motif; Region: SEC-C; pfam02810
471473001981	HMMPfam hit to PF02810, SEC-C motif, score 8.3e-10
471473001982	1 probable transmembrane helix predicted for CTL0399 by TMHMM2.0 at aa 231-253
471473001983	Serine/Threonine protein kinases, catalytic domain; Region: S_TKc; smart00220
471473001984	Catalytic domain of Protein Kinases; Region: PKc; cd00180
471473001985	active site
471473001986	ATP binding site [chemical binding]; other site
471473001987	substrate binding site [chemical binding]; other site
471473001988	activation loop (A-loop); other site
471473001989	Uncharacterized conserved protein [Function unknown]; Region: COG1262
471473001990	Formylglycine-generating sulfatase enzyme; Region: FGE-sulfatase; pfam03781
471473001991	HMMPfam hit to PF00069, Protein kinase domain,score 1.5e-06
471473001992	HMMPfam hit to PF03781, Domain of unknown function (DUF323), score 2.3e-103
471473001993	NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cd00114
471473001994	DNA ligase, NAD-dependent; Region: dnlj; TIGR00575
471473001995	nucleotide binding pocket [chemical binding]; other site
471473001996	K-X-D-G motif; other site
471473001997	catalytic site [active]
471473001998	NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120
471473001999	NAD-dependent DNA ligase C4 zinc finger domain; Region: DNA_ligase_ZBD; pfam03119
471473002000	Helix-hairpin-helix motif; Region: HHH; pfam00633
471473002001	helix-hairpin-helix signature motif; other site
471473002002	Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo...; Region: BRCT; cd00027
471473002003	Dimer interface [polypeptide binding]; other site
471473002004	HMMPfam hit to PF01653, NAD-dependent DNA ligase adenylation, score 3.6e-102
471473002005	HMMPfam hit to PF03120, NAD-dependent DNA ligase OB-fold doma, score 9.5e-49
471473002006	PS01056 NAD-dependent DNA ligase signature 2
471473002007	HMMPfam hit to PF03119, NAD-dependent DNA ligase C4 zinc fing, score 1.6e-08
471473002008	HMMPfam hit to PF00633, Helix-hairpin-helix motif,score 4.4e-08
471473002009	HMMPfam hit to PF00533, BRCA1 C Terminus (BRCT) domain, score 1.3e-17
471473002010	4 probable transmembrane helices predicted for CTL0402 by TMHMM2.0 at aa 76-98, 100-122, 848-870 and 877-899
471473002011	hypothetical protein; Provisional; Region: PRK06184
471473002012	HMMPfam hit to PF01494, FAD binding domain, score 9.2e-05
471473002013	Hydrolases of the alpha/beta superfamily [General function prediction only]; Region: COG1073
471473002014	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
471473002015	50S ribosomal protein L33; Validated; Region: rpmG; PRK00595
471473002016	HMMPfam hit to PF00471, Ribosomal protein L33,score 2.8e-14
471473002017	ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]; Region: SalY; COG0577
471473002018	FtsX-like permease family; Region: FtsX; pfam02687
471473002019	4 probable transmembrane helices predicted for CTL0406 by TMHMM2.0 at aa 21-43, 364-386, 407-429 and 464-486
471473002020	HMMPfam hit to PF02687, Predicted permease, score 3.7e-40
471473002021	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
471473002022	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
471473002023	Walker A/P-loop; other site
471473002024	ATP binding site [chemical binding]; other site
471473002025	Q-loop/lid; other site
471473002026	ABC transporter signature motif; other site
471473002027	Walker B; other site
471473002028	D-loop; other site
471473002029	H-loop/switch region; other site
471473002030	HMMPfam hit to PF00005, ABC transporter, score 7.7e-55
471473002031	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002032	PS00211 ABC transporters family signature
471473002033	membrane-attack complex / perforin; Region: MACPF; smart00457
471473002034	Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases; Region: MIR; smart00472
471473002035	HMMPfam hit to PF01823, MAC/Perforin domain, score 1.1e-63
471473002036	The sequence has been checked and is believed to be correct
471473002037	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.55
471473002038	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 2
471473002039	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
471473002040	PLD-like domain; Region: PLDc_2; pfam13091
471473002041	putative active site [active]
471473002042	catalytic site [active]
471473002043	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
471473002044	PLD-like domain; Region: PLDc_2; pfam13091
471473002045	putative active site [active]
471473002046	catalytic site [active]
471473002047	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 1.6
471473002048	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.009
471473002049	indel in L2 and Harl13: acgattccg
471473002050	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
471473002051	PLD-like domain; Region: PLDc_2; pfam13091
471473002052	putative active site [active]
471473002053	catalytic site [active]
471473002054	Catalytic domain of EDTA-resistant nuclease Nuc, vertebrate phospholipase D6, and similar proteins; Region: PLDc_Nuc_like; cd09116
471473002055	PLD-like domain; Region: PLDc_2; pfam13091
471473002056	putative active site [active]
471473002057	catalytic site [active]
471473002058	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 1.3
471473002059	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.026
471473002060	The sequence has been checked and is believed to be correct
471473002061	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 2.3
471473002062	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.00026
471473002063	The sequence has been checked and is believed to be correct
471473002064	The sequence has been checked and is believed to be correct
471473002065	1 probable transmembrane helix predicted for CTL0418 by TMHMM2.0 at aa 47-69
471473002066	1 probable transmembrane helix predicted for CTL0419 by TMHMM2.0 at aa 63-85
471473002067	HMMPfam hit to PF00612, IQ calmodulin-binding motif,score 0.00048
471473002068	PS00018 EF-hand calcium-binding domain
471473002069	1 probable transmembrane helix predicted for CTL0419A by TMHMM2.0 at aa 31-53
471473002070	Trp repressor protein; Region: Trp_repressor; cl17266
471473002071	HMMPfam hit to PF01371, Trp repressor protein,score 6.9e-41
471473002072	tryptophan synthase, beta subunit; Region: trpB; TIGR00263
471473002073	Tryptophan synthase-beta:  Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to...; Region: Trp-synth_B; cd06446
471473002074	pyridoxal 5'-phosphate binding site [chemical binding]; other site
471473002075	catalytic residue [active]
471473002076	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 5.7e-121
471473002077	PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site
471473002078	tryptophan synthase alpha subunit; Provisional; Region: trpA; CHL00200
471473002079	Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both...; Region: Tryptophan_synthase_alpha; cd04724
471473002080	substrate binding site [chemical binding]; other site
471473002081	active site
471473002082	catalytic residues [active]
471473002083	heterodimer interface [polypeptide binding]; other site
471473002084	HMMPfam hit to PF00290, Tryptophan synthase alpha chain, score 2.4e-19
471473002085	The sequence has been checked and is believed to be correct
471473002086	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
471473002087	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
471473002088	peptide binding site [polypeptide binding]; other site
471473002089	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473002090	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 3.5e-70
471473002091	putative disulfide oxidoreductase; Provisional; Region: PRK00611
471473002092	HMMPfam hit to PF02600, Disulfide bond formation protein DsbB, score 2.3e-64
471473002093	4 probable transmembrane helices predicted for CTL0428 by TMHMM2.0 at aa 7-29, 39-58, 71-93 and 108-130
471473002094	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473002095	Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]; Region: DsbG; COG1651
471473002096	Thioredoxin; Region: Thioredoxin_4; cl17273
471473002097	1 probable transmembrane helix predicted for CTL0429 by TMHMM2.0 at aa 12-29
471473002098	Vitamin K epoxide reductase (VKOR) family; Region: VKOR; cl01729
471473002099	putative active site [active]
471473002100	redox center [active]
471473002101	10 probable transmembrane helices predicted for CTL0430 by TMHMM2.0 at aa 17-39, 54-76, 89-111,141-163,170-192, 202-224, 303-325, 335-352, 359-381 and 385-402
471473002102	2 probable transmembrane helices predicted for CTL0431 by TMHMM2.0 at aa 2-24 and 29-51
471473002103	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
471473002104	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
471473002105	Walker A/P-loop; other site
471473002106	ATP binding site [chemical binding]; other site
471473002107	Q-loop/lid; other site
471473002108	ABC transporter signature motif; other site
471473002109	Walker B; other site
471473002110	D-loop; other site
471473002111	H-loop/switch region; other site
471473002112	HMMPfam hit to PF00005, ABC transporter, score 3.2e-40
471473002113	PS00211 ABC transporters family signature
471473002114	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002115	3-deoxy-manno-octulosonate cytidylyltransferase; Provisional; Region: PRK05450
471473002116	CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide; Region: CMP-KDO-Synthetase; cd02517
471473002117	Ligand binding site; other site
471473002118	oligomer interface; other site
471473002119	HMMPfam hit to PF02348, Cytidylyltransferase, score 7.6e-94
471473002120	CTP synthetase; Validated; Region: pyrG; PRK05380
471473002121	CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent...; Region: CTGs; cd03113
471473002122	Catalytic site [active]
471473002123	active site
471473002124	UTP binding site [chemical binding]; other site
471473002125	Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746
471473002126	active site
471473002127	putative oxyanion hole; other site
471473002128	catalytic triad [active]
471473002129	HMMPfam hit to PF06418, CTP synthase N-terminus,score 5.6e-192
471473002130	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 7.2e-73
471473002131	Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]; Region: COG0816
471473002132	HMMPfam hit to PF03652, Uncharacterised protein family (UPF0081), score 7.6e-60
471473002133	glucose-6-phosphate 1-dehydrogenase; Validated; Region: PRK05722
471473002134	Glucose-6-phosphate dehydrogenase, NAD binding domain; Region: G6PD_N; pfam00479
471473002135	Glucose-6-phosphate dehydrogenase, C-terminal domain; Region: G6PD_C; pfam02781
471473002136	HMMPfam hit to PF00479, Glucose-6-phosphate dehydrogenase, NAD bindi, score 2.6e-47
471473002137	PS00069 Glucose-6-phosphate dehydrogenase active site
471473002138	HMMPfam hit to PF02781, Glucose-6-phosphate dehydrogenase, C-termina, score 3e-125
471473002139	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]; Region: NagB; COG0363
471473002140	6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard...; Region: 6PGL; cd01400
471473002141	putative active site [active]
471473002142	DNA polymerase III subunit delta'; Validated; Region: PRK05917
471473002143	DNA polymerase III subunit delta'; Validated; Region: PRK08485
471473002144	thymidylate kinase; Validated; Region: tmk; PRK00698
471473002145	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
471473002146	TMP-binding site; other site
471473002147	ATP-binding site [chemical binding]; other site
471473002148	HMMPfam hit to PF02223, Thymidylate kinase, score 8.7e-86
471473002149	PS01331 Thymidylate kinase signature
471473002150	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002151	DNA gyrase, A subunit; Region: gyrA; TIGR01063
471473002152	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cd00187
471473002153	CAP-like domain; other site
471473002154	active site
471473002155	primary dimer interface [polypeptide binding]; other site
471473002156	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
471473002157	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
471473002158	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
471473002159	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
471473002160	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
471473002161	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
471473002162	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 1.1e-11
471473002163	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 2.5e-10
471473002164	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 1.1e-15
471473002165	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 1.6e-09
471473002166	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 1.9e-11
471473002167	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 3.7e-11
471473002168	HMMPfam hit to PF00521, DNA gyrase/topoisomerase IV,subunit A, score 6.6e-300
471473002169	DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939
471473002170	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
471473002171	ATP binding site [chemical binding]; other site
471473002172	Mg2+ binding site [ion binding]; other site
471473002173	G-X-G motif; other site
471473002174	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
471473002175	anchoring element; other site
471473002176	dimer interface [polypeptide binding]; other site
471473002177	ATP binding site [chemical binding]; other site
471473002178	TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the...; Region: TOPRIM_TopoIIA_GyrB; cd03366
471473002179	active site
471473002180	putative metal-binding site [ion binding]; other site
471473002181	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
471473002182	HMMPfam hit to PF00986, DNA gyrase B subunit,carboxyl terminus, score 1.4e-44
471473002183	HMMPfam hit to PF01751, Toprim domain, score 1.2e-10
471473002184	PS00177 DNA topoisomerase II signature
471473002185	HMMPfam hit to PF00204, DNA gyrase B, score 1.6e-91
471473002186	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and H, score 1.5e-27
471473002187	Protein of unknown function (DUF721); Region: DUF721; pfam05258
471473002188	2 probable transmembrane helices predicted for CTL0444 by TMHMM2.0 at aa 33-55 and 60-82
471473002189	queuine tRNA-ribosyltransferase; Provisional; Region: PRK01008
471473002190	Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343
471473002191	HMMPfam hit to PF01702, Queuine tRNA-ribosyltransferase, score 1.3e-54
471473002192	Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]; Region: MgtE; COG2239
471473002193	MgtE intracellular N domain; Region: MgtE_N; pfam03448
471473002194	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE.  MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other...; Region: CBS_pair_Mg_transporter; cd04606
471473002195	Divalent cation transporter; Region: MgtE; pfam01769
471473002196	5 probable transmembrane helices predicted for CTL0446 by TMHMM2.0 at aa 291-313, 320-342, 375-397,409-431 and 451-469
471473002197	HMMPfam hit to PF01769, Divalent cation transporter,score 1.8e-54
471473002198	HMMPfam hit to PF00571, CBS domain pair, score 7.7e-17
471473002199	HMMPfam hit to PF03448, MgtE intracellular domain,score 3.1e-32
471473002200	3 probable transmembrane helices predicted for CTL0447 by TMHMM2.0 at aa 53-75, 85-107 and 175-197
471473002201	2 probable transmembrane helices predicted for CTL0448 by TMHMM2.0 at aa 34-56 and 63-85
471473002202	UGMP family protein; Validated; Region: PRK09604
471473002203	Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214; cl17884
471473002204	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
471473002205	HMMPfam hit to PF00814, Glycoprotease family, score 4.4e-69
471473002206	PS01016 Glycoprotease family signature
471473002207	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
471473002208	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
471473002209	peptide binding site [polypeptide binding]; other site
471473002210	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473002211	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 7.7e-67
471473002212	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
471473002213	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
471473002214	dimer interface [polypeptide binding]; other site
471473002215	conserved gate region; other site
471473002216	putative PBP binding loops; other site
471473002217	ABC-ATPase subunit interface; other site
471473002218	7 probable transmembrane helices predicted for CTL0451 by TMHMM2.0 at aa 9-31, 102-124, 133-155,175-197,218-240, 245-264 and 277-299
471473002219	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.2e-42
471473002220	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
471473002221	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
471473002222	dimer interface [polypeptide binding]; other site
471473002223	conserved gate region; other site
471473002224	putative PBP binding loops; other site
471473002225	ABC-ATPase subunit interface; other site
471473002226	6 probable transmembrane helices predicted for CTL0452 by TMHMM2.0 at aa 19-41, 80-102, 122-141,145-167,191-213 and 241-263
471473002227	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 5.1e-37
471473002228	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
471473002229	nickel import ATP-binding protein NikD; Region: nickel_nikD; TIGR02770
471473002230	Walker A/P-loop; other site
471473002231	ATP binding site [chemical binding]; other site
471473002232	Q-loop/lid; other site
471473002233	ABC transporter signature motif; other site
471473002234	Walker B; other site
471473002235	D-loop; other site
471473002236	H-loop/switch region; other site
471473002237	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; pfam08352
471473002238	HMMPfam hit to PF00005, ABC transporter, score 1.5e-49
471473002239	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002240	PS00211 ABC transporters family signature
471473002241	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter, C-termi, score 8.6e-06
471473002242	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
471473002243	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
471473002244	Walker A/P-loop; other site
471473002245	ATP binding site [chemical binding]; other site
471473002246	Q-loop/lid; other site
471473002247	ABC transporter signature motif; other site
471473002248	Walker B; other site
471473002249	D-loop; other site
471473002250	H-loop/switch region; other site
471473002251	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
471473002252	HMMPfam hit to PF00005, ABC transporter, score 2.8e-55
471473002253	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002254	PS00211 ABC transporters family signature
471473002255	Protein of unknown function (DUF1186); Region: DUF1186; pfam06685
471473002256	HMMPfam hit to PF06685, Protein of unknown function (DUF1186), score 8.3e-194
471473002257	Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]; Region: CitT; COG0471
471473002258	Anion permease ArsB/NhaD.  These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life.  A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cd00625
471473002259	transmembrane helices; other site
471473002260	HMMPfam hit to PF00939, Sodium:sulfate symporter transmembrane, score 9.2e-275
471473002261	10 probable transmembrane helices predicted for CTL0456 by TMHMM2.0 at aa 7-29, 44-66, 120-142,178-200,213-235, 281-303, 324-346, 361-378, 390-412 and 445-467
471473002262	diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional; Region: PRK07085
471473002263	active site
471473002264	ADP/pyrophosphate binding site [chemical binding]; other site
471473002265	dimerization interface [polypeptide binding]; other site
471473002266	allosteric effector site; other site
471473002267	fructose-1,6-bisphosphate binding site; other site
471473002268	HMMPfam hit to PF00365, Phosphofructokinase, score 1.1e-09
471473002269	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
471473002270	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
471473002271	diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional; Region: PRK07085
471473002272	pyrophosphate-dependent phosphofructokinase; Region: PLN02251
471473002273	active site
471473002274	ADP/pyrophosphate binding site [chemical binding]; other site
471473002275	dimerization interface [polypeptide binding]; other site
471473002276	allosteric effector site; other site
471473002277	fructose-1,6-bisphosphate binding site; other site
471473002278	HMMPfam hit to PF00365, Phosphofructokinase, score 5e-08
471473002279	3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]; Region: KdtA; COG1519
471473002280	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); Region: Glycos_transf_N; pfam04413
471473002281	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002282	HMMPfam hit to PF04413,3-Deoxy-D-manno-octulosonic-acid tran, score 1.6e-102
471473002283	1 probable transmembrane helix predicted for CTL0460 by TMHMM2.0 at aa 5-27
471473002284	leucyl-tRNA synthetase; Validated; Region: leuS; PRK00390
471473002285	catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812
471473002286	HIGH motif; other site
471473002287	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
471473002288	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
471473002289	active site
471473002290	KMSKS motif; other site
471473002291	Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases; Region: Anticodon_Ia_Leu_BEm; cd07958
471473002292	tRNA binding surface [nucleotide binding]; other site
471473002293	HMMPfam hit to PF08264, Anticodon-binding domain,score 3e-07
471473002294	HMMPfam hit to PF00133, tRNA synthetases class I (I,L, M and V), score 9.4e-13
471473002295	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
471473002296	glutamate-1-semialdehyde aminotransferase; Provisional; Region: PRK00615
471473002297	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
471473002298	inhibitor-cofactor binding pocket; inhibition site
471473002299	pyridoxal 5'-phosphate binding site [chemical binding]; other site
471473002300	catalytic residue [active]
471473002301	HMMPfam hit to PF00202, Aminotransferase class-III,score 1.2e-48
471473002302	PS00435 Peroxidases proximal heme-ligand signature
471473002303	Putative transcriptional regulator [Transcription]; Region: COG1678
471473002304	HMMPfam hit to PF02622, Uncharacterized ACR,COG1678,score 3.8e-88
471473002305	Uncharacterized conserved protein [Function unknown]; Region: COG1259
471473002306	HMMPfam hit to PF02577, Uncharacterised ACR,COG1259,score 2.5e-85
471473002307	RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the...; Region: RPI_A; cd01398
471473002308	tetramer (dimer of dimers) interface [polypeptide binding]; other site
471473002309	active site
471473002310	dimer interface [polypeptide binding]; other site
471473002311	HMMPfam hit to PF06026, Ribose 5-phosphate isomerase A (phosph, score 7.7e-85
471473002312	2 probable transmembrane helices predicted for CTL0466 by TMHMM2.0 at aa 36-58 and 68-90
471473002313	fructose-bisphosphate aldolase; Provisional; Region: PRK09250
471473002314	Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs); Region: DhnA; cd00958
471473002315	putative active site; other site
471473002316	catalytic residue [active]
471473002317	HMMPfam hit to PF01791, DeoC/LacD family aldolase,score 6.3e-58
471473002318	putative glutamate/gamma-aminobutyrate antiporter; Region: put_Glu_GABA_T; TIGR03813
471473002319	12 probable transmembrane helices predicted for CTL0468 by TMHMM2.0 at aa 7-26, 41-63, 83-105,120-142,149-171, 191-210, 231-253, 277-299, 328-350,357-379,400-422 and 437-459
471473002320	HMMPfam hit to PF00324, Amino acid permease, score 1.2e-05
471473002321	tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]; Region: MesJ; COG0037
471473002322	This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily; Region: Alpha_ANH_like_II; cd01993
471473002323	Ligand Binding Site [chemical binding]; other site
471473002324	HMMPfam hit to PF01171, PP-loop family, score 4.2e-08
471473002325	Predicted acid phosphatase [General function prediction only]; Region: SurE; COG0496
471473002326	HMMPfam hit to PF01975, Survival protein SurE,score 5.9e-105
471473002327	PS00063 Aldo/keto reductase family putative active site signature
471473002328	prenyltransferase; Reviewed; Region: ubiA; PRK12876
471473002329	UbiA prenyltransferase family; Region: UbiA; pfam01040
471473002330	HMMPfam hit to PF01040, UbiA prenyltransferase family, score 3.4e-71
471473002331	9 probable transmembrane helices predicted for CTL0471 by TMHMM2.0 at aa 21-43, 48-70, 90-109,113-135,140-162, 166-185, 216-238, 242-264 and 277-299
471473002332	aromatic acid decarboxylase; Validated; Region: PRK05920
471473002333	Flavoprotein; Region: Flavoprotein; pfam02441
471473002334	HMMPfam hit to PF02441, Flavoprotein, score 1.6e-47
471473002335	1 probable transmembrane helix predicted for CTL0472 by TMHMM2.0 at aa 5-27
471473002336	Uncharacterized conserved protein [Function unknown]; Region: COG1284
471473002337	Uncharacterized protein conserved in bacteria (DUF2179); Region: DUF2179; pfam10035
471473002338	6 probable transmembrane helices predicted for CTL0473 by TMHMM2.0 at aa 20-39, 54-76, 83-105,125-142,163-185 and 190-212
471473002339	HMMPfam hit to PF02588, Uncharacterized BCR, YitT family COG1284, score 7.5e-20
471473002340	HMMPfam hit to PF02588, Uncharacterized BCR, YitT family COG1284, score 1e-18
471473002341	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473002342	HMMPfam hit to PF04156, IncA protein, score 2.1e-11
471473002343	2 probable transmembrane helices predicted for CTL0475 by TMHMM2.0 at aa 39-61 and 66-88
471473002344	IncA protein; Region: IncA; pfam04156
471473002345	HMMPfam hit to PF04156, IncA protein, score 1.1e-38
471473002346	2 probable transmembrane helices predicted for CTL0476 by TMHMM2.0 at aa 38-60 and 67-89
471473002347	IncA protein; Region: IncA; pfam04156
471473002348	2 probable transmembrane helices predicted for CTL0477 by TMHMM2.0 at aa 35-57 and 62-84
471473002349	2 probable transmembrane helices predicted for CTL0477A by TMHMM2.0 at aa 13-35 and 45-67
471473002350	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473002351	2 probable transmembrane helices predicted for CTL0478 by TMHMM2.0 at aa 40-62 and 72-94
471473002352	2 probable transmembrane helices predicted for CTL0479 by TMHMM2.0 at aa 36-58 and 68-90
471473002353	IncA protein; Region: IncA; pfam04156
471473002354	HMMPfam hit to PF04156, IncA protein, score 1.3e-41
471473002355	2 probable transmembrane helices predicted for CTL0480 by TMHMM2.0 at aa 37-59 and 64-86
471473002356	HMMPfam hit to PF04156, IncA protein, score 1.7e-38
471473002357	2 probable transmembrane helices predicted for CTL0481 by TMHMM2.0 at aa 43-65 and 69-91
471473002358	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
471473002359	Sodium:dicarboxylate symporter family; Region: SDF; pfam00375
471473002360	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 1.4e-10
471473002361	9 probable transmembrane helices predicted for CTL0482 by TMHMM2.0 at aa 21-43, 53-70, 83-105,146-164,177-199, 219-241, 292-314, 329-351 and 356-378
471473002362	solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain; Region: SLC6sbd_Tyt1-Like; cd10336
471473002363	Na2 binding site [ion binding]; other site
471473002364	putative substrate binding site 1 [chemical binding]; other site
471473002365	Na binding site 1 [ion binding]; other site
471473002366	putative substrate binding site 2 [chemical binding]; other site
471473002367	12 probable transmembrane helices predicted for CTL0483 by TMHMM2.0 at aa 7-29, 44-66, 87-109,138-157,170-189, 245-267, 279-301, 316-338, 351-373,378-400,420-442 and 457-479
471473002368	HMMPfam hit to PF00209, Sodium:neurotransmitter symporter family, score 2.2e-11
471473002369	2 probable transmembrane helices predicted for CTL0484 by TMHMM2.0 at aa 30-52 and 67-89
471473002370	2 probable transmembrane helices predicted for CTL0485 by TMHMM2.0 at aa 110-132 and 142-164
471473002371	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
471473002372	putative substrate translocation pore; other site
471473002373	11 probable transmembrane helices predicted for CTL0486 by TMHMM2.0 at aa 28-47, 62-84, 93-115,125-146,159-177, 187-206, 241-263, 283-302, 309-331,394-416 and 670-692
471473002374	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
471473002375	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
471473002376	ligand binding site [chemical binding]; other site
471473002377	flexible hinge region; other site
471473002378	HMMPfam hit to PF00027, Cyclic nucleotide-binding domain, score 1.7e-21
471473002379	acyl carrier protein; Provisional; Region: acpP; PRK00982
471473002380	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 3.8e-18
471473002381	PS00012 Phosphopantetheine attachment site
471473002382	beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333
471473002383	3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830
471473002384	NAD(P) binding site [chemical binding]; other site
471473002385	homotetramer interface [polypeptide binding]; other site
471473002386	homodimer interface [polypeptide binding]; other site
471473002387	active site
471473002388	HMMPfam hit to PF00106, short chain dehydrogenase,score 2.7e-38
471473002389	PS00061 Short-chain dehydrogenases/reductases family signature
471473002390	(acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Region: FabD; COG0331
471473002391	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
471473002392	HMMPfam hit to PF00698, Acyl transferase domain,score 2.4e-10
471473002393	3-oxoacyl-(acyl-carrier-protein) synthase III; Region: fabH; TIGR00747
471473002394	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
471473002395	dimer interface [polypeptide binding]; other site
471473002396	active site
471473002397	CoA binding pocket [chemical binding]; other site
471473002398	HMMPfam hit to PF08541,3-Oxoacyl-[acyl-carrier-protein (ACP)], score 4.4e-40
471473002399	HMMPfam hit to PF08545,3-Oxoacyl-[acyl-carrier-protein (ACP)], score 5.2e-38
471473002400	recombination protein RecR; Region: recR; TIGR00615
471473002401	TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR.  RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a...; Region: TOPRIM_recR; cd01025
471473002402	putative active site [active]
471473002403	putative metal-binding site [ion binding]; other site
471473002404	tetramer interface [polypeptide binding]; other site
471473002405	HMMPfam hit to PF01751, Toprim domain, score 1.8e-14
471473002406	Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]; Region: COG4775
471473002407	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
471473002408	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
471473002409	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
471473002410	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
471473002411	Surface antigen; Region: Bac_surface_Ag; pfam01103
471473002412	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 5.1e-17
471473002413	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 2.4e-12
471473002414	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 3.8e-12
471473002415	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 1.2e-13
471473002416	HMMPfam hit to PF01103, Surface antigen, score 8e-30
471473002417	Outer membrane protein [Cell envelope biogenesis, outer membrane]; Region: HlpA; COG2825
471473002418	HMMPfam hit to PF03938, Outer membrane protein (OmpH-like), score 1.5e-35
471473002419	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Region: lipid_A_lpxD; TIGR01853
471473002420	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Region: LpxD; pfam04613
471473002421	UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2; Region: LbH_LpxD; cd03352
471473002422	trimer interface [polypeptide binding]; other site
471473002423	active site
471473002424	UDP-GlcNAc binding site [chemical binding]; other site
471473002425	lipid binding site [chemical binding]; lipid-binding site
471473002426	HMMPfam hit to PF04613,UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a, score 1e-43
471473002427	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 1.3
471473002428	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.47
471473002429	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 1.3
471473002430	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.025
471473002431	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.076
471473002432	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 15
471473002433	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 18
471473002434	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.69
471473002435	pyruvate dehydrogenase E1 component, alpha subunit; Region: PDH_E1_alph_y; TIGR03182
471473002436	Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000
471473002437	tetramer interface [polypeptide binding]; other site
471473002438	TPP-binding site [chemical binding]; other site
471473002439	heterodimer interface [polypeptide binding]; other site
471473002440	phosphorylation loop region [posttranslational modification]
471473002441	HMMPfam hit to PF00676, Dehydrogenase E1 component,score 6.6e-72
471473002442	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]; Region: AcoB; COG0022
471473002443	Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins; Region: TPP_PYR_E1-PDHc-beta_like; cd07036
471473002444	alpha subunit interface [polypeptide binding]; other site
471473002445	TPP binding site [chemical binding]; other site
471473002446	heterodimer interface [polypeptide binding]; other site
471473002447	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
471473002448	HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 3.7e-73
471473002449	HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 1.9e-55
471473002450	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; Region: PDHac_trf_mito; TIGR01349
471473002451	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
471473002452	E3 interaction surface; other site
471473002453	lipoyl attachment site [posttranslational modification]; other site
471473002454	e3 binding domain; Region: E3_binding; pfam02817
471473002455	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
471473002456	HMMPfam hit to PF00364, Biotin-requiring enzyme,score 1.6e-14
471473002457	HMMPfam hit to PF02817, e3 binding domain, score 5.9e-19
471473002458	HMMPfam hit to PF00198, 2-oxoacid dehydrogenases acyltransferas, score 3.1e-113
471473002459	This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of...; Region: GT1_Glycogen_Phosphorylase; cd04300
471473002460	homodimer interface [polypeptide binding]; other site
471473002461	glycogen/starch/alpha-glucan phosphorylases; Region: P_ylase; TIGR02093
471473002462	active site pocket [active]
471473002463	HMMPfam hit to PF00343, Carbohydrate phosphorylase,score 0
471473002464	PS00102 Phosphorylase pyridoxal-phosphate attachment site
471473002465	2 probable transmembrane helices predicted for CTL0500A by TMHMM2.0 at aa 51-73 and 77-99
471473002466	chromosomal replication initiation protein; Provisional; Region: PRK12422
471473002467	DnaA N-terminal domain; Region: DnaA_N; pfam11638
471473002468	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473002469	Walker A motif; other site
471473002470	ATP binding site [chemical binding]; other site
471473002471	Walker B motif; other site
471473002472	arginine finger; other site
471473002473	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
471473002474	DnaA box-binding interface [nucleotide binding]; other site
471473002475	HMMPfam hit to PF08299, Bacterial dnaA protein helix-turn-helix, score 2.1e-24
471473002476	HMMPfam hit to PF00308, Bacterial dnaA protein,score 6.2e-40
471473002477	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002478	putative inner membrane protein translocase component YidC; Provisional; Region: PRK01001
471473002479	membrane protein insertase, YidC/Oxa1 family, C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592
471473002480	HMMPfam hit to PF02096, 60Kd inner membrane protein,score 1.9e-114
471473002481	5 probable transmembrane helices predicted for CTL0503 by TMHMM2.0 at aa 7-26, 566-588, 633-655, 686-708 and 734-756
471473002482	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473002483	prolipoprotein diacylglyceryl transferase; Reviewed; Region: PRK00052
471473002484	HMMPfam hit to PF01790, Prolipoprotein diacylglyceryl transferase, score 2.4e-91
471473002485	7 probable transmembrane helices predicted for CTL0504 by TMHMM2.0 at aa 20-42, 62-84, 94-116,129-151,184-203, 210-232 and 247-269
471473002486	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473002487	CAAX protease self-immunity; Region: Abi; pfam02517
471473002488	6 probable transmembrane helices predicted for CTL0506 by TMHMM2.0 at aa 4-25, 32-54, 69-91,112-134,158-180 and 208-230
471473002489	HMMPfam hit to PF02517, CAAX amino terminal protease family, score 1.1e-30
471473002490	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) N-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs; Region: NTP-PPase_MazG_Nterm; cd11528
471473002491	homodimer interface [polypeptide binding]; other site
471473002492	metal binding site [ion binding]; metal-binding site
471473002493	HMMPfam hit to PF03819, MazG nucleotide pyrophosphohydrolase domain, score 4.7e-26
471473002494	Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253
471473002495	Domain of unknown function DUF21; Region: DUF21; pfam01595
471473002496	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
471473002497	Transporter associated domain; Region: CorC_HlyC; smart01091
471473002498	HMMPfam hit to PF01595, Domain of unknown function DUF21, score 2.7e-38
471473002499	3 probable transmembrane helices predicted for CTL0508 by TMHMM2.0 at aa 5-27, 52-74 and 81-103
471473002500	HMMPfam hit to PF00571, CBS domain pair, score 7.5e-09
471473002501	HMMPfam hit to PF03471, Transporter associated domain, score 1.3e-22
471473002502	Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253
471473002503	Domain of unknown function DUF21; Region: DUF21; pfam01595
471473002504	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
471473002505	Transporter associated domain; Region: CorC_HlyC; smart01091
471473002506	3 probable transmembrane helices predicted for CTL0509 by TMHMM2.0 at aa 7-29, 95-114 and 135-157
471473002507	HMMPfam hit to PF01595, Domain of unknown function DUF21, score 8.1e-47
471473002508	HMMPfam hit to PF00571, CBS domain pair, score 5.1e-11
471473002509	HMMPfam hit to PF03471, Transporter associated domain, score 2.7e-15
471473002510	Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]; Region: NifS; COG1104
471473002511	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
471473002512	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
471473002513	catalytic residue [active]
471473002514	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 0.00014
471473002515	HMMPfam hit to PF00266, Aminotransferase class-V,score 2.2e-31
471473002516	Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cd00143
471473002517	Protein phosphatase 2C; Region: PP2C; pfam00481
471473002518	active site
471473002519	HMMPfam hit to PF00481, Protein phosphatase 2C,score 0.0001
471473002520	Uncharacterized conserved protein [Function unknown]; Region: COG5465
471473002521	DNA polymerase III subunit epsilon; Validated; Region: PRK06309
471473002522	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
471473002523	active site
471473002524	catalytic site [active]
471473002525	substrate binding site [chemical binding]; other site
471473002526	Protein of unknown function (DUF3820); Region: DUF3820; cl01411
471473002527	HMMPfam hit to PF00929, Exonuclease, score 5e-54
471473002528	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign
471473002529	Predicted periplasmic solute-binding protein [General function prediction only]; Region: COG2107
471473002530	HMMPfam hit to PF02642, Uncharacterized ACR,COG2107,score 2.5e-180
471473002531	nucleosidase; Provisional; Region: PRK05634
471473002532	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
471473002533	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
471473002534	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
471473002535	Walker A/P-loop; other site
471473002536	ATP binding site [chemical binding]; other site
471473002537	Q-loop/lid; other site
471473002538	ABC transporter signature motif; other site
471473002539	Walker B; other site
471473002540	D-loop; other site
471473002541	H-loop/switch region; other site
471473002542	HMMPfam hit to PF00005, ABC transporter, score 1.9e-51
471473002543	PS00211 ABC transporters family signature
471473002544	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002545	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 9.3e-06
471473002546	5 probable transmembrane helices predicted for CTL0516 by TMHMM2.0 at aa 20-42, 125-147, 195-217, 221-243 and 312-334
471473002547	acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated; Region: PRK05724
471473002548	acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional; Region: accA; CHL00198
471473002549	PS00070 Aldehyde dehydrogenases cysteine active site
471473002550	HMMPfam hit to PF03255, Acetyl co-enzyme A carboxylase carboxyltrans, score 1.4e-93
471473002551	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
471473002552	IHF - DNA interface [nucleotide binding]; other site
471473002553	IHF dimer interface [polypeptide binding]; other site
471473002554	HMMPfam hit to PF00216, Bacterial DNA-binding protein, score 2.7e-33
471473002555	N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: AmiC; COG0860
471473002556	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
471473002557	active site
471473002558	metal binding site [ion binding]; metal-binding site
471473002559	HMMPfam hit to PF01520, N-acetylmuramoyl-L-alanine amidase, score 9.3e-89
471473002560	UDP-N-acetylmuramyl-tripeptide synthetase; Region: murE; TIGR01085
471473002561	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
471473002562	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
471473002563	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
471473002564	HMMPfam hit to PF02875, Mur ligase family,glutamate ligase doma, score 1.4e-28
471473002565	HMMPfam hit to PF08245, Mur ligase middle domain,score 6.5e-75
471473002566	PS01011 Folylpolyglutamate synthase signature 1
471473002567	HMMPfam hit to PF01225, Mur ligase family,catalytic domain, score 6.6e-14
471473002568	Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]; Region: FtsI; COG0768
471473002569	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
471473002570	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
471473002571	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 6.2e-48
471473002572	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002573	HMMPfam hit to PF03717, Penicillin-binding Protein dimerisatio, score 2.5e-29
471473002574	1 probable transmembrane helix predicted for CTL0522 by TMHMM2.0 at aa 7-26
471473002575	Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]; Region: COG0275
471473002576	MraW methylase family; Region: Methyltransf_5; pfam01795
471473002577	HMMPfam hit to PF01795, MraW methylase family,score 1.8e-172
471473002578	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
471473002579	TPR motif; other site
471473002580	binding surface
471473002581	chromosomal replication initiation protein; Reviewed; Region: dnaA; PRK00149
471473002582	DnaA N-terminal domain; Region: DnaA_N; pfam11638
471473002583	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473002584	Walker A motif; other site
471473002585	ATP binding site [chemical binding]; other site
471473002586	Walker B motif; other site
471473002587	arginine finger; other site
471473002588	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
471473002589	DnaA box-binding interface [nucleotide binding]; other site
471473002590	HMMPfam hit to PF00308, Bacterial dnaA protein,score 1.6e-101
471473002591	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002592	HMMPfam hit to PF08299, Bacterial dnaA protein helix-turn-helix, score 1.1e-26
471473002593	Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]; Region: CcmA; COG1664
471473002594	Polymer-forming cytoskeletal; Region: Bactofilin; pfam04519
471473002595	HMMPfam hit to PF04519, Protein of unknown function,DUF583, score 2.7e-45
471473002596	Na(+)-translocating NADH-quinone reductase subunit B; Provisional; Region: PRK01024
471473002597	HMMPfam hit to PF03116, NQR2, RnfD, RnfE family,score 0
471473002598	8 probable transmembrane helices predicted for CTL0530 by TMHMM2.0 at aa 57-79, 120-142, 155-177,356-378,385-407, 417-436, 449-468 and 473-495
471473002599	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]; Region: NqrC; COG2869
471473002600	NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; Region: nqrC; TIGR01938
471473002601	1 probable transmembrane helix predicted for CTL0531 by TMHMM2.0 at aa 13-35
471473002602	HMMPfam hit to PF04205, FMN-binding domain, score 4.9e-24
471473002603	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]; Region: NqrD; COG1347
471473002604	HMMPfam hit to PF02508, Rnf-Nqr subunit, membrane protein, score 2.3e-94
471473002605	6 probable transmembrane helices predicted for CTL0532 by TMHMM2.0 at aa 13-35, 40-62, 69-86,92-114,141-163 and 183-205
471473002606	Na(+)-translocating NADH-quinone reductase subunit E; Provisional; Region: PRK01061
471473002607	HMMPfam hit to PF02508, Rnf-Nqr subunit, membrane protein, score 7.3e-111
471473002608	6 probable transmembrane helices predicted for CTL0533 by TMHMM2.0 at aa 13-35, 48-70, 90-112,119-141,151-173 and 186-208
471473002609	Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and...; Region: GCS_H; cd06848
471473002610	lipoyl attachment site [posttranslational modification]; other site
471473002611	HMMPfam hit to PF01597, Glycine cleavage H-protein,score 3.5e-12
471473002612	HMMPfam hit to PF00364, Biotin-requiring enzyme,score 0.00088
471473002613	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site
471473002614	Chlamydial GcvH-like protein upstream region protein; Region: near_not_gcvH; TIGR03076
471473002615	Phosphatidylserine/phosphatidylglycerophosphate/car diolipin synthases and related enzymes [Lipid metabolism]; Region: Cls; COG1502
471473002616	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
471473002617	putative active site [active]
471473002618	catalytic site [active]
471473002619	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
471473002620	putative active site [active]
471473002621	catalytic site [active]
471473002622	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.062
471473002623	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.25
471473002624	1 probable transmembrane helix predicted for CTL0536 by TMHMM2.0 at aa 9-28
471473002625	Lipoate-protein ligase A [Coenzyme metabolism]; Region: LplA; COG0095
471473002626	HMMPfam hit to PF03099, Biotin/lipoate A/B protein ligase famil, score 2.3e-19
471473002627	ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]; Region: clpA; COG0542
471473002628	Clp amino terminal domain; Region: Clp_N; pfam02861
471473002629	Clp amino terminal domain; Region: Clp_N; pfam02861
471473002630	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473002631	Walker A motif; other site
471473002632	ATP binding site [chemical binding]; other site
471473002633	Walker B motif; other site
471473002634	arginine finger; other site
471473002635	UvrB/uvrC motif; Region: UVR; pfam02151
471473002636	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473002637	Walker A motif; other site
471473002638	ATP binding site [chemical binding]; other site
471473002639	Walker B motif; other site
471473002640	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
471473002641	HMMPfam hit to PF02861, Clp amino terminal domain,score 2e-18
471473002642	PS00307 Legume lectins beta-chain signature
471473002643	HMMPfam hit to PF02861, Clp amino terminal domain,score 5.5e-18
471473002644	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 4.1e-10
471473002645	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002646	HMMPfam hit to PF02151, UvrB/uvrC motif, score 2.5e-10
471473002647	HMMPfam hit to PF07724, ATPase family associated with various cellul, score 4.8e-97
471473002648	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 0.00038
471473002649	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002650	tRNA methyl transferase; Region: tRNA_Me_trans; pfam03054
471473002651	tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; Region: tRNA_Me_trans; cd01998
471473002652	Ligand Binding Site [chemical binding]; other site
471473002653	HMMPfam hit to PF03054, tRNA methyl transferase,score 2.9e-224
471473002654	HMMPfam hit to PF01171, PP-loop family, score 0.016
471473002655	HMMPfam hit to PF04156, IncA protein, score 0.00057
471473002656	4 probable transmembrane helices predicted for CTL0540 by TMHMM2.0 at aa 36-58, 63-85, 240-262 and 266-288
471473002657	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473002658	2 probable transmembrane helices predicted for CTL0541 by TMHMM2.0 at aa 10-32 and 338-360
471473002659	Helix-turn-helix domain; Region: HTH_17; pfam12728
471473002660	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
471473002661	active site
471473002662	phosphorylation site [posttranslational modification]
471473002663	HMMPfam hit to PF00359,Phosphoenolpyruvate-dependent sugar phosph, score 0.00029
471473002664	PS00372 PTS EIIA domains phosphorylation site signature 2
471473002665	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
471473002666	active site
471473002667	phosphorylation site [posttranslational modification]
471473002668	HMMPfam hit to PF00359,Phosphoenolpyruvate-dependent sugar phosph, score 9.3e-16
471473002669	PS00372 PTS EIIA domains phosphorylation site signature 2
471473002670	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
471473002671	trimer interface [polypeptide binding]; other site
471473002672	active site
471473002673	HMMPfam hit to PF00692, dUTPase, score 8.8e-26
471473002674	acetyl-CoA carboxylase subunit beta; Validated; Region: PRK05654
471473002675	malonate decarboxylase subunit beta; Reviewed; Region: PRK07189; cl17682
471473002676	Superoxide dismutase [Inorganic ion transport and metabolism]; Region: SodA; COG0605
471473002677	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
471473002678	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
471473002679	HMMPfam hit to PF02777, Iron/manganese superoxide dismutases, C-term, score 5.9e-54
471473002680	PS00088 Manganese and iron superoxide dismutases signature
471473002681	HMMPfam hit to PF00081, Iron/manganese superoxide dismutases, alpha-, score 3.8e-46
471473002682	Phosphomannomutase [Carbohydrate transport and metabolism]; Region: {ManB}; COG1109
471473002683	This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and...; Region: PGM2; cd05799
471473002684	active site
471473002685	substrate binding site [chemical binding]; other site
471473002686	metal binding site [ion binding]; metal-binding site
471473002687	HMMPfam hit to PF02880,Phosphoglucomutase/phosphomannomutase, al, score 0.00069
471473002688	HMMPfam hit to PF02879,Phosphoglucomutase/phosphomannomutase, al, score 0.0042
471473002689	HMMPfam hit to PF02878,Phosphoglucomutase/phosphomannomutase, al, score 1.1e-59
471473002690	PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature
471473002691	ribonuclease III; Reviewed; Region: rnc; PRK00102
471473002692	RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in...; Region: RIBOc; cd00593
471473002693	dimerization interface [polypeptide binding]; other site
471473002694	active site
471473002695	metal binding site [ion binding]; metal-binding site
471473002696	Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III; Region: DSRM; cd00048
471473002697	dsRNA binding site [nucleotide binding]; other site
471473002698	HMMPfam hit to PF00636, RNase3 domain, score 4.6e-43
471473002699	PS00517 Ribonuclease III family signature
471473002700	HMMPfam hit to PF00035, Double-stranded RNA binding motif, score 4.2e-15
471473002701	DNA repair protein RadA; Provisional; Region: PRK11823
471473002702	Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of...; Region: Sms; cd01121
471473002703	Walker A motif/ATP binding site; other site
471473002704	ATP binding site [chemical binding]; other site
471473002705	Walker B motif; other site
471473002706	Subunit ChlI of Mg-chelatase; Region: ChlI; pfam13541
471473002707	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002708	porphobilinogen deaminase; Provisional; Region: PRK01066
471473002709	Porphobilinogen deaminase, dipyromethane cofactor binding domain; Region: Porphobil_deam; pfam01379
471473002710	HMMPfam hit to PF01379, Porphobilinogen deaminase,dipyrometha, score 4.1e-17
471473002711	The sequence has been checked and is believed to be correct
471473002712	2 probable transmembrane helices predicted for CTL0552A by TMHMM2.0 at aa 30-52 and 65-87
471473002713	serine/threonine-protein kinase; Reviewed; Region: pknD; PRK13184
471473002714	Catalytic domain of Protein Kinases; Region: PKc; cd00180
471473002715	active site
471473002716	ATP binding site [chemical binding]; other site
471473002717	substrate binding site [chemical binding]; other site
471473002718	activation loop (A-loop); other site
471473002719	HMMPfam hit to PF00069, Protein kinase domain,score 2.3e-44
471473002720	PS00108 Serine/Threonine protein kinases active-site signature
471473002721	PS00107 Protein kinases ATP-binding region signature
471473002722	valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729
471473002723	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
471473002724	HIGH motif; other site
471473002725	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
471473002726	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
471473002727	active site
471473002728	KMSKS motif; other site
471473002729	Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962
471473002730	tRNA binding surface [nucleotide binding]; other site
471473002731	anticodon binding site; other site
471473002732	Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458
471473002733	HMMPfam hit to PF08264, Anticodon-binding domain,score 1.4e-24
471473002734	HMMPfam hit to PF00133, tRNA synthetases class I (I,L, M and V), score 9.5e-213
471473002735	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
471473002736	V-type ATP synthase subunit K; Provisional; Region: PRK09621
471473002737	ATP synthase subunit C; Region: ATP-synt_C; pfam00137
471473002738	4 probable transmembrane helices predicted for CTL0556 by TMHMM2.0 at aa 10-32, 45-67, 77-96 and 117-139
471473002739	HMMPfam hit to PF00137, ATP synthase subunit C,score 0.00038
471473002740	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473002741	V-type ATP synthase subunit I; Validated; Region: PRK05771
471473002742	Protein of unknown function (DUF1319); Region: DUF1319; pfam07028
471473002743	HMMPfam hit to PF01496, V-type ATPase 116kDa subunit family, score 1.2e-10
471473002744	7 probable transmembrane helices predicted for CTL0557 by TMHMM2.0 at aa 317-339, 360-382,457-479,486-508, 518-540, 561-583 and 593-615
471473002745	V-type ATP synthase subunit D; Provisional; Region: PRK02195
471473002746	HMMPfam hit to PF01813, ATP synthase subunit D,score 6.2e-79
471473002747	V-type ATP synthase subunit B; Provisional; Region: PRK02118
471473002748	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
471473002749	V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi...; Region: V_A-ATPase_B; cd01135
471473002750	Walker A motif homologous position; other site
471473002751	Walker B motif; other site
471473002752	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleot, score 1e-65
471473002753	HMMPfam hit to PF02874, ATP synthase alpha/beta family, beta-ba, score 2.4e-14
471473002754	V-type ATP synthase subunit A; Provisional; Region: PRK04192
471473002755	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
471473002756	V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction.  The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi...; Region: V_A-ATPase_A; cd01134
471473002757	Walker A motif/ATP binding site; other site
471473002758	Walker B motif; other site
471473002759	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
471473002760	HMMPfam hit to PF00306, ATP synthase alpha/beta chain, C termin, score 2.7e-09
471473002761	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleot, score 3.5e-89
471473002762	PS00152 ATP synthase alpha and beta subunits signature
471473002763	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002764	HMMPfam hit to PF02874, ATP synthase alpha/beta family, beta-ba, score 2e-12
471473002765	Protein of unknown function (DUF2764); Region: DUF2764; pfam10962
471473002766	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002767	V-type ATP synthase subunit E; Provisional; Region: PRK01005
471473002768	V-type ATP synthase subunit E; Provisional; Region: PRK01558
471473002769	HMMPfam hit to PF01991, ATP synthase (E/31 kDa) subunit, score 0.00014
471473002770	PS00652 TNFR/NGFR family cysteine-rich region signature
471473002771	transaldolase-like protein; Provisional; Region: PTZ00411
471473002772	Transaldolases including both TalA and TalB; Region: Transaldolase_TalAB; cd00957
471473002773	active site
471473002774	dimer interface [polypeptide binding]; other site
471473002775	catalytic residue [active]
471473002776	HMMPfam hit to PF00923, Transaldolase, score 7.8e-121
471473002777	PS00958 Transaldolase active site
471473002778	PS01054 Transaldolase signature 1
471473002779	RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997
471473002780	DNA-directed RNA polymerase, beta' subunit, predominant form; Region: rpoC_TIGR; TIGR02386
471473002781	RNA polymerase I subunit A N-terminus; Region: RPOLA_N; smart00663
471473002782	RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983
471473002783	RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000
471473002784	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
471473002785	Rpb1 - Rpb6 interaction site [polypeptide binding]; other site
471473002786	Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655
471473002787	DNA binding site [nucleotide binding]
471473002788	Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site
471473002789	HMMPfam hit to PF04998, RNA polymerase Rpb1,domain,score 1.2e-122
471473002790	HMMPfam hit to PF05000, RNA polymerase Rpb1,domain,score 6.9e-25
471473002791	HMMPfam hit to PF04983, RNA polymerase Rpb1,domain,score 1.5e-39
471473002792	HMMPfam hit to PF00623, RNA polymerase Rpb1,domain,score 2.4e-86
471473002793	HMMPfam hit to PF04997, RNA polymerase Rpb1,domain,score 1.4e-165
471473002794	RNA polymerase beta subunit; Region: RNA_pol_Rpb2_1; pfam04563
471473002795	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl17585
471473002796	RNA polymerase Rpb2, domain 2; Region: RNA_pol_Rpb2_2; pfam04561
471473002797	DNA-directed RNA polymerase, beta subunit; Region: rpoB; TIGR02013
471473002798	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
471473002799	RNA polymerase Rpb2, domain 6; Region: RNA_pol_Rpb2_6; pfam00562
471473002800	RPB12 interaction site [polypeptide binding]; other site
471473002801	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
471473002802	RPB3 interaction site [polypeptide binding]; other site
471473002803	RPB1 interaction site [polypeptide binding]; other site
471473002804	RPB11 interaction site [polypeptide binding]; other site
471473002805	RPB10 interaction site [polypeptide binding]; other site
471473002806	HMMPfam hit to PF04560, RNA polymerase Rpb2,domain,score 6.4e-46
471473002807	HMMPfam hit to PF00562, RNA polymerase Rpb2,domain,score 2.1e-181
471473002808	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002809	PS01166 RNA polymerases beta chain signature
471473002810	HMMPfam hit to PF04565, RNA polymerase Rpb2,domain,score 5.9e-43
471473002811	HMMPfam hit to PF04563, RNA polymerase beta subunit,score 8.6e-30
471473002812	Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387
471473002813	L11 interface [polypeptide binding]; other site
471473002814	putative EF-Tu interaction site [polypeptide binding]; other site
471473002815	putative EF-G interaction site [polypeptide binding]; other site
471473002816	HMMPfam hit to PF00542, Ribosomal protein L7/L12 C-terminal dom, score 4e-39
471473002817	Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein...; Region: Ribosomal_L10; cd05797
471473002818	23S rRNA interface [nucleotide binding]; other site
471473002819	Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site
471473002820	Ribosomal protein L1.  The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA.  In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds...; Region: Ribosomal_L1; cd00403
471473002821	mRNA/rRNA interface [nucleotide binding]; other site
471473002822	HMMPfam hit to PF00687, Ribosomal protein L1p/L10e family, score 2.7e-108
471473002823	50S ribosomal protein L11; Validated; Region: rplK; PRK00140
471473002824	Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349
471473002825	putative thiostrepton binding site; other site
471473002826	23S rRNA interface [nucleotide binding]; other site
471473002827	L7/L12 interface [polypeptide binding]; other site
471473002828	L25 interface [polypeptide binding]; other site
471473002829	PS00359 Ribosomal protein L11 signature
471473002830	HMMPfam hit to PF00298, Ribosomal protein L11, RNA binding do, score 5.9e-31
471473002831	HMMPfam hit to PF03946, Ribosomal protein L11,N-terminal dom, score 5.3e-31
471473002832	Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891
471473002833	transcription termination/antitermination factor NusG; Region: nusG; TIGR00922
471473002834	putative homodimer interface [polypeptide binding]; other site
471473002835	NusG contains an NGN domain at its N-terminus and KOW motif at its C-terminus; Region: KOW_NusG; cd06091
471473002836	heterodimer interface [polypeptide binding]; other site
471473002837	homodimer interface [polypeptide binding]; other site
471473002838	HMMPfam hit to PF00467, KOW motif, score 5.2e-08
471473002839	HMMPfam hit to PF02357, Transcription termination factor nusG, score 2.8e-37
471473002840	Preprotein translocase subunit SecE [Intracellular trafficking and secretion]; Region: SecE; COG0690
471473002841	1 probable transmembrane helix predicted for CTL0573 by TMHMM2.0 at aa 47-66
471473002842	elongation factor Tu; Reviewed; Region: PRK12735
471473002843	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
471473002844	G1 box; other site
471473002845	GEF interaction site [polypeptide binding]; other site
471473002846	GTP/Mg2+ binding site [chemical binding]; other site
471473002847	Switch I region; other site
471473002848	G2 box; other site
471473002849	G3 box; other site
471473002850	Switch II region; other site
471473002851	G4 box; other site
471473002852	G5 box; other site
471473002853	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
471473002854	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
471473002855	Antibiotic Binding Site [chemical binding]; other site
471473002856	HMMPfam hit to PF03143, Elongation factor Tu C-terminal domain, score 2e-57
471473002857	HMMPfam hit to PF03144, Elongation factor Tu domain,score 2.7e-25
471473002858	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 4.7e-96
471473002859	PS00301 GTP-binding elongation factors signature
471473002860	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002861	S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451
471473002862	rRNA binding site [nucleotide binding]; other site
471473002863	predicted 30S ribosome binding site; other site
471473002864	HMMPfam hit to PF00575, S1 RNA binding domain,score 1.2e-05
471473002865	HMMPfam hit to PF01176, Translation initiation factor 1A / IF-1, score 3.6e-26
471473002866	3 probable transmembrane helices predicted for CTL0576 by TMHMM2.0 at aa 76-93, 97-119 and 150-172
471473002867	Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]; Region: sufE; COG2166
471473002868	HMMPfam hit to PF02657, Fe-S metabolism associated domain, score 1.2e-67
471473002869	The sequence has been checked and is believed to be correct
471473002870	HMMPfam hit to PF05095, Protein of unknown function (DUF687), score 0
471473002871	Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are...; Region: PRAI; cd00405
471473002872	active site
471473002873	HMMPfam hit to PF00697,N-(5'phosphoribosyl)anthranilate (PRA) isome, score 2.6e-26
471473002874	Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311
471473002875	triosephosphate isomerase; Provisional; Region: PRK14565
471473002876	substrate binding site [chemical binding]; other site
471473002877	dimer interface [polypeptide binding]; other site
471473002878	catalytic triad [active]
471473002879	HMMPfam hit to PF00121, Triosephosphate isomerase,score 3e-141
471473002880	PS00171 Triosephosphate isomerase active site
471473002881	Exonuclease VII, large subunit [DNA replication, recombination, and repair]; Region: XseA; COG1570
471473002882	ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF; cd04489
471473002883	generic binding surface II; other site
471473002884	generic binding surface I; other site
471473002885	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 8.3e-08
471473002886	HMMPfam hit to PF02601, Exonuclease VII, large subunit, score 3.7e-152
471473002887	exodeoxyribonuclease VII small subunit; Provisional; Region: PRK00977
471473002888	HMMPfam hit to PF02609, Exonuclease VII small subunit, score 3.1e-08
471473002889	Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]; Region: Dxs; COG1154
471473002890	1-deoxy-D-xylulose-5-phosphate synthase; Region: DXP_synthase_N; pfam13292
471473002891	TPP-binding site [chemical binding]; other site
471473002892	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
471473002893	PYR/PP interface [polypeptide binding]; other site
471473002894	dimer interface [polypeptide binding]; other site
471473002895	TPP binding site [chemical binding]; other site
471473002896	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
471473002897	PS00801 Transketolase signature 1
471473002898	HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 3.8e-50
471473002899	HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 5.6e-44
471473002900	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl17342
471473002901	pyruvate kinase; Region: pyruv_kin; TIGR01064
471473002902	domain interfaces; other site
471473002903	active site
471473002904	HMMPfam hit to PF00224, Pyruvate kinase, barrel domain, score 1.1e-137
471473002905	HMMPfam hit to PF02887, Pyruvate kinase, alpha/beta domain, score 5.9e-13
471473002906	excinuclease ABC subunit A; Provisional; Region: PRK00635
471473002907	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
471473002908	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
471473002909	ATP-binding cassette domain II of the excision repair protein UvrA; Region: ABC_UvrA_II; cd03271
471473002910	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
471473002911	Walker A/P-loop; other site
471473002912	ATP binding site [chemical binding]; other site
471473002913	Q-loop/lid; other site
471473002914	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
471473002915	ABC transporter signature motif; other site
471473002916	Walker B; other site
471473002917	D-loop; other site
471473002918	H-loop/switch region; other site
471473002919	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
471473002920	Walker A/P-loop; other site
471473002921	ATP binding site [chemical binding]; other site
471473002922	Q-loop/lid; other site
471473002923	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
471473002924	Q-loop/lid; other site
471473002925	ABC transporter signature motif; other site
471473002926	Walker B; other site
471473002927	D-loop; other site
471473002928	H-loop/switch region; other site
471473002929	HMMPfam hit to PF00005, ABC transporter, score 1.1e-08
471473002930	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002931	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002932	HMMPfam hit to PF00005, ABC transporter, score 7.8e-13
471473002933	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002934	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002935	DNA polymerase III subunits gamma and tau; Validated; Region: PRK06305
471473002936	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473002937	Walker A motif; other site
471473002938	ATP binding site [chemical binding]; other site
471473002939	Walker B motif; other site
471473002940	arginine finger; other site
471473002941	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 5.5e-07
471473002942	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002943	hypothetical protein; Validated; Region: PRK00153
471473002944	HMMPfam hit to PF02575, Uncharacterised BCR, YbaB family COG0718, score 1.6e-38
471473002945	phosphoenolpyruvate-protein phosphotransferase; Region: PTS_I_fam; TIGR01417
471473002946	PEP-utilising enzyme, N-terminal; Region: PEP-utilisers_N; pfam05524
471473002947	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
471473002948	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
471473002949	HMMPfam hit to PF02896, PEP-utilising enzyme, TIM barrel doma, score 7.9e-37
471473002950	HMMPfam hit to PF00391, PEP-utilising enzyme,mobile domain, score 2.5e-20
471473002951	HMMPfam hit to PF05524, PEP-utilising enzyme,N-terminal, score 1.3e-13
471473002952	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
471473002953	dimerization domain swap beta strand [polypeptide binding]; other site
471473002954	regulatory protein interface [polypeptide binding]; other site
471473002955	active site
471473002956	regulatory phosphorylation site [posttranslational modification]; other site
471473002957	HMMPfam hit to PF00381, PTS HPr component phosphorylation site, score 1.2e-16
471473002958	PS00589 PTS HPR component serine phosphorylation site signature
471473002959	Predicted membrane metal-binding protein [General function prediction only]; Region: ComEC; COG0658
471473002960	Competence protein; Region: Competence; pfam03772
471473002961	9 probable transmembrane helices predicted for CTL0593 by TMHMM2.0 at aa 42-64, 76-93, 254-276,283-302,317-339, 346-368, 381-403, 416-438 and 474-496
471473002962	HMMPfam hit to PF03772, Competence protein, score 4.5e-59
471473002963	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]; Region: AcoA; COG1071
471473002964	Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000
471473002965	tetramer interface [polypeptide binding]; other site
471473002966	TPP-binding site [chemical binding]; other site
471473002967	heterodimer interface [polypeptide binding]; other site
471473002968	phosphorylation loop region [posttranslational modification]
471473002969	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]; Region: AcoB; COG0022
471473002970	Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins; Region: TPP_PYR_E1-PDHc-beta_like; cd07036
471473002971	alpha subunit interface [polypeptide binding]; other site
471473002972	TPP binding site [chemical binding]; other site
471473002973	heterodimer interface [polypeptide binding]; other site
471473002974	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
471473002975	HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 2.8e-56
471473002976	HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 8e-74
471473002977	HMMPfam hit to PF00676, Dehydrogenase E1 component,score 1.4e-29
471473002978	PS00017 ATP/GTP-binding site motif A (P-loop)
471473002979	chaperone protein DnaJ; Provisional; Region: PRK14284
471473002980	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
471473002981	HSP70 interaction site [polypeptide binding]; other site
471473002982	Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cd10719
471473002983	Zn binding sites [ion binding]; other site
471473002984	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
471473002985	dimer interface [polypeptide binding]; other site
471473002986	HMMPfam hit to PF01556, DnaJ C terminal region,score 9.6e-54
471473002987	HMMPfam hit to PF00684, DnaJ central domain (4 repeats), score 1.6e-23
471473002988	HMMPfam hit to PF00226, DnaJ domain, score 4.6e-40
471473002989	PS00636 Nt-dnaJ domain signature
471473002990	30S ribosomal protein S21; Reviewed; Region: rpsU; PRK00270
471473002991	HMMPfam hit to PF01165, Ribosomal protein S21,score 9e-11
471473002992	Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214
471473002993	Glycoprotease family; Region: Peptidase_M22; pfam00814
471473002994	HMMPfam hit to PF00814, Glycoprotease family, score 3.4e-05
471473002995	ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466
471473002996	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473002997	Walker A motif; other site
471473002998	ATP binding site [chemical binding]; other site
471473002999	Walker B motif; other site
471473003000	arginine finger; other site
471473003001	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
471473003002	HMMPfam hit to PF02190, ATP-dependent protease La (LON) domain, score 1.6e-16
471473003003	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 2.2e-48
471473003004	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 3.2e-05
471473003005	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003006	HMMPfam hit to PF05362, Lon protease (S16) C-terminal proteolytic do, score 1.3e-107
471473003007	PS01046 ATP-dependent serine proteases, lon family,serine active site
471473003008	2 probable transmembrane helices predicted for CTL0599 by TMHMM2.0 at aa 31-53 and 57-79
471473003009	ribonuclease Z; Region: RNase_Z; TIGR02651
471473003010	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 3.5e-10
471473003011	site-specific tyrosine recombinase XerC; Reviewed; Region: xerC; PRK00236
471473003012	XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains. XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination...; Region: INT_XerDC; cd00798
471473003013	active site
471473003014	Int/Topo IB signature motif; other site
471473003015	HMMPfam hit to PF02899, Phage integrase, N-terminal SAM-like, score 8.7e-05
471473003016	HMMPfam hit to PF00589, Phage integrase family,score 1.9e-44
471473003017	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
471473003018	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
471473003019	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
471473003020	ABC transporter; Region: ABC_tran_2; pfam12848
471473003021	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
471473003022	HMMPfam hit to PF00005, ABC transporter, score 1.2e-32
471473003023	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003024	HMMPfam hit to PF00005, ABC transporter, score 9.9e-37
471473003025	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003026	Maf-like protein; Region: Maf; pfam02545
471473003027	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
471473003028	active site
471473003029	dimer interface [polypeptide binding]; other site
471473003030	HMMPfam hit to PF02545, Maf-like protein, score 1.4e-107
471473003031	FOG: HEAT repeat [Energy production and conversion]; Region: COG1413
471473003032	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473003033	Preprotein translocase subunit SecG [Intracellular trafficking and secretion]; Region: SecG; COG1314
471473003034	2 probable transmembrane helices predicted for CTL0606 by TMHMM2.0 at aa 3-25 and 57-79
471473003035	HMMPfam hit to PF03840, Preprotein translocase SecG subunit, score 6.9e-24
471473003036	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
471473003037	active site
471473003038	catalytic residues [active]
471473003039	metal binding site [ion binding]; metal-binding site
471473003040	HMMPfam hit to PF01327, Polypeptide deformylase,score 6.2e-51
471473003041	16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed; Region: ksgA; PRK00274
471473003042	dimethyladenosine transferase; Region: ksgA; TIGR00755
471473003043	HMMPfam hit to PF00398, Ribosomal RNA adenine dimethylase, score 5.6e-56
471473003044	PS01131 Ribosomal RNA adenine dimethylases signature
471473003045	1 probable transmembrane helix predicted for CTL0609 by TMHMM2.0 at aa 7-29
471473003046	Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]; Region: COG1331
471473003047	TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein; Region: SSP411; cd02955
471473003048	catalytic residues [active]
471473003049	PS00336 Beta-lactamase class-C active site
471473003050	HMMPfam hit to PF03190, Protein of unknown function,DUF255, score 7.6e-48
471473003051	2 probable transmembrane helices predicted for CTL0611A by TMHMM2.0 at aa 37-59 and 64-86
471473003052	The sequence has been checked and is believed to be correct
471473003053	2 probable transmembrane helices predicted for CTL0612 by TMHMM2.0 at aa 45-67 and 77-99
471473003054	Uncharacterized conserved protein [General function prediction only]; Region: BioY; COG1268
471473003055	HMMPfam hit to PF02632, BioY family, score 1.5e-70
471473003056	5 probable transmembrane helices predicted for CTL0613 by TMHMM2.0 at aa 22-44, 51-73, 88-113, 125-147 and 162-184
471473003057	PS00011 Vitamin K-dependent carboxylation domain
471473003058	dihydrodipicolinate synthase; Region: dapA; TIGR00674
471473003059	Dihydrodipicolinate synthase family; Region: DHDPS-like; cd00408
471473003060	inhibitor site; inhibition site
471473003061	active site
471473003062	dimer interface [polypeptide binding]; other site
471473003063	catalytic residue [active]
471473003064	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 2.2e-15
471473003065	PS00665 Dihydrodipicolinate synthetase signature 1
471473003066	aspartate kinase; Provisional; Region: PRK05925
471473003067	AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such...; Region: AAK_AK-HSDH-like; cd04243
471473003068	putative catalytic residues [active]
471473003069	nucleotide binding site [chemical binding]; other site
471473003070	aspartate binding site [chemical binding]; other site
471473003071	HMMPfam hit to PF00696, Amino acid kinase family,score 1.8e-54
471473003072	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003073	PS00324 Aspartokinase signature
471473003074	aspartate-semialdehyde dehydrogenase; Reviewed; Region: PRK08664
471473003075	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
471473003076	HMMPfam hit to PF02774, Semialdehyde dehydrogenase,dimerisat, score 7.1e-20
471473003077	HMMPfam hit to PF01118, Semialdehyde dehydrogenase,NAD bindi, score 7.8e-36
471473003078	Dihydrodipicolinate reductase [Amino acid transport and metabolism]; Region: DapB; COG0289
471473003079	Dihydrodipicolinate reductase, N-terminus; Region: DapB_N; pfam01113
471473003080	Dihydrodipicolinate reductase, C-terminus; Region: DapB_C; pfam05173
471473003081	HMMPfam hit to PF05173, Dihydrodipicolinate reductase, C-terminus, score 1.8e-57
471473003082	HMMPfam hit to PF01113, Dihydrodipicolinate reductase, N-terminus, score 1.1e-29
471473003083	10 probable transmembrane helices predicted for CTL0619 by TMHMM2.0 at aa 55-77, 83-105, 125-147,162-179,212-234, 238-260, 338-360, 370-392, 469-491 and 495-517
471473003084	5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]; Region: AroA; COG0128
471473003085	EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form...; Region: EPSP_synthase; cd01556
471473003086	hinge; other site
471473003087	active site
471473003088	HMMPfam hit to PF00275, EPSP synthase (3-phosphoshikimate 1-car, score 1.2e-75
471473003089	PS00885 EPSP synthase signature 2
471473003090	shikimate kinase; Provisional; Region: PRK00625
471473003091	Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis...; Region: SK; cd00464
471473003092	ADP binding site [chemical binding]; other site
471473003093	magnesium binding site [ion binding]; other site
471473003094	putative shikimate binding site; other site
471473003095	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003096	HMMPfam hit to PF01202, Shikimate kinase, score 2.3e-32
471473003097	Chorismate synthase [Amino acid transport and metabolism]; Region: AroC; COG0082
471473003098	Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Region: Chorismate_synthase; cd07304
471473003099	Tetramer interface [polypeptide binding]; other site
471473003100	active site
471473003101	FMN-binding site [chemical binding]; other site
471473003102	HMMPfam hit to PF01264, Chorismate synthase, score 3e-126
471473003103	PS00787 Chorismate synthase signature 1
471473003104	PS00788 Chorismate synthase signature 2
471473003105	Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis; Region: DHQS; cd08195
471473003106	dimer interface [polypeptide binding]; other site
471473003107	active site
471473003108	metal binding site [ion binding]; metal-binding site
471473003109	HMMPfam hit to PF01761, 3-dehydroquinate synthase,score 1.5e-124
471473003110	bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed; Region: aroDE; PRK09310
471473003111	Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase); Region: DHQase_I; cd00502
471473003112	active site
471473003113	catalytic residue [active]
471473003114	dimer interface [polypeptide binding]; other site
471473003115	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
471473003116	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
471473003117	shikimate binding site; other site
471473003118	NAD(P) binding site [chemical binding]; other site
471473003119	HMMPfam hit to PF01487, Type I 3-dehydroquinase,score 6.7e-77
471473003120	HMMPfam hit to PF08501, Shikimate dehydrogenase substrate bind, score 2.1e-16
471473003121	HMMPfam hit to PF01488, Shikimate / quinate 5-dehydrogenase, score 7.2e-08
471473003122	Protein of unknown function (DUF2608); Region: DUF2608; pfam11019
471473003123	Carbohydrate-selective porin, OprB family; Region: OprB; pfam04966
471473003124	HMMPfam hit to PF04966, Carbohydrate-selective porin, OprB family, score 2e-31
471473003125	The sequence has been checked and is believed to be correct
471473003126	HMMPfam hit to PF01862, Pyruvoyl-dependent arginine decarboxylase (P, score 1.7e-84
471473003127	transporter, basic amino acid/polyamine antiporter (APA) family; Region: 2A0302; TIGR00905
471473003128	13 probable transmembrane helices predicted for CTL0628 by TMHMM2.0 at aa 11-33, 48-70, 90-112,127-149,156-178, 209-228, 241-263, 293-315, 335-357,367-389,402-419, 423-445 and 458-477
471473003129	HMMPfam hit to PF00324, Amino acid permease, score 3.2e-07
471473003130	PS00095 C-5 cytosine-specific DNA methylases C-terminal signature
471473003131	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
471473003132	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
471473003133	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 6.1e-54
471473003134	malate dehydrogenase; Provisional; Region: PRK05442
471473003135	Chloroplast-like malate dehydrogenases; Region: MDH_choloroplast_like; cd01338
471473003136	NAD(P) binding site [chemical binding]; other site
471473003137	dimer interface [polypeptide binding]; other site
471473003138	malate binding site [chemical binding]; other site
471473003139	HMMPfam hit to PF02866, lactate/malate dehydrogenase, alpha/beta C-t, score 1.3e-28
471473003140	HMMPfam hit to PF00056, lactate/malate dehydrogenase, NAD binding do, score 3e-36
471473003141	glucose-6-phosphate isomerase; Provisional; Region: pgi; PRK14095
471473003142	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015
471473003143	active site
471473003144	dimer interface [polypeptide binding]; other site
471473003145	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016
471473003146	dimer interface [polypeptide binding]; other site
471473003147	active site
471473003148	HMMPfam hit to PF00342, Phosphoglucose isomerase,score 1.6e-116
471473003149	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003150	GTPases [General function prediction only]; Region: HflX; COG2262
471473003151	GTP-binding GTPase N-terminal; Region: GTP-bdg_N; pfam13167
471473003152	HflX GTPase family; Region: HflX; cd01878
471473003153	G1 box; other site
471473003154	GTP/Mg2+ binding site [chemical binding]; other site
471473003155	Switch I region; other site
471473003156	G2 box; other site
471473003157	G3 box; other site
471473003158	Switch II region; other site
471473003159	G4 box; other site
471473003160	G5 box; other site
471473003161	HMMPfam hit to PF01926, GTPase of unknown function,score 1.2e-37
471473003162	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003163	Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]; Region: PhnP; COG1235
471473003164	putative hydrolase; Provisional; Region: PRK02113
471473003165	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 7.9e-15
471473003166	PS00022 EGF-like domain signature 1
471473003167	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
471473003168	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
471473003169	substrate binding pocket [chemical binding]; other site
471473003170	membrane-bound complex binding site; other site
471473003171	hinge residues; other site
471473003172	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1e-32
471473003173	3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]; Region: AroA; COG2876
471473003174	phospho-2-dehydro-3-deoxyheptonate aldolase; Region: DAHP_synth_Bsub; TIGR01361
471473003175	HMMPfam hit to PF00793, DAHP synthetase I family,score 3.1e-121
471473003176	IncA protein; Region: IncA; pfam04156
471473003177	2 probable transmembrane helices predicted for CTL0639 by TMHMM2.0 at aa 106-128 and 133-155
471473003178	FOG: HEAT repeat [Energy production and conversion]; Region: COG1413
471473003179	Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a...; Region: PKCI_related; cd01276
471473003180	nucleotide binding site/active site [active]
471473003181	HMMPfam hit to PF01230, HIT domain, score 7.9e-35
471473003182	PS00892 HIT family signature
471473003183	Uncharacterized conserved protein related to MYG1 family [Function unknown]; Region: COG4286
471473003184	HMMPfam hit to PF03690, Uncharacterised protein family (UPF0160), score 1.1e-180
471473003185	Predicted Rossmann fold nucleotide-binding protein [General function prediction only]; Region: COG1611
471473003186	hypothetical protein; Validated; Region: PRK00647
471473003187	HMMPfam hit to PF02594, Uncharacterised ACR, YggU family COG1872, score 1.6e-32
471473003188	Protein of unknown function (DUF1207); Region: DUF1207; pfam06727
471473003189	1 probable transmembrane helix predicted for CTL0645 by TMHMM2.0 at aa 7-24
471473003190	HMMPfam hit to PF06727, Protein of unknown function (DUF1207), score 6.7e-295
471473003191	LL-diaminopimelate aminotransferase; Region: DAPAT_plant; TIGR03542
471473003192	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
471473003193	pyridoxal 5'-phosphate binding site [chemical binding]; other site
471473003194	homodimer interface [polypeptide binding]; other site
471473003195	catalytic residue [active]
471473003196	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.5e-32
471473003197	PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site
471473003198	ABC transporter substrate binding protein; Region: ABC_sub_bind; pfam04392
471473003199	1 probable transmembrane helix predicted for CTL0647 by TMHMM2.0 at aa 7-29
471473003200	HMMPfam hit to PF04392, ABC transporter substrate binding protei, score 3.6e-132
471473003201	prolyl-tRNA synthetase; Provisional; Region: PRK09194
471473003202	Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ProRS_core_prok; cd00779
471473003203	dimer interface [polypeptide binding]; other site
471473003204	motif 1; other site
471473003205	active site
471473003206	motif 2; other site
471473003207	INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and...; Region: ProRS-INS; cd04334
471473003208	putative deacylase active site [active]
471473003209	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
471473003210	active site
471473003211	motif 3; other site
471473003212	ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding; Region: ProRS_anticodon_short; cd00861
471473003213	anticodon binding site; other site
471473003214	HMMPfam hit to PF00587, tRNA synthetase class II core domain (, score 1e-51
471473003215	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
471473003216	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003217	HMMPfam hit to PF04073, YbaK / prolyl-tRNA synthetases associa, score 7.6e-05
471473003218	HMMPfam hit to PF03129, Anticodon binding domain,score 2.9e-20
471473003219	Transcriptional regulator of heat shock gene [Transcription]; Region: HrcA; COG1420
471473003220	HMMPfam hit to PF01628, HrcA protein C terminal domain, score 3.3e-76
471473003221	GrpE; Region: GrpE; pfam01025
471473003222	GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding; Region: GrpE; cd00446
471473003223	dimer interface [polypeptide binding]; other site
471473003224	hsp70 (ATPase domain) interactions [polypeptide binding]; other site
471473003225	HMMPfam hit to PF01025, GrpE, score 5.3e-72
471473003226	PS01071 grpE protein signature
471473003227	molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290
471473003228	Nucleotide-binding domain of human HSPA9 and similar proteins; Region: HSPA9-Ssq1-like_NBD; cd10234
471473003229	nucleotide binding site [chemical binding]; other site
471473003230	NEF interaction site [polypeptide binding]; other site
471473003231	SBD interface [polypeptide binding]; other site
471473003232	Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]; Region: NtpF; COG2811
471473003233	PS00297 Heat shock hsp70 proteins family signature 1
471473003234	PS00329 Heat shock hsp70 proteins family signature 2
471473003235	PS01036 Heat shock hsp70 proteins family signature 3
471473003236	Exoribonuclease R [Transcription]; Region: VacB; COG0557
471473003237	Ribonuclease B OB domain; Region: OB_RNB; pfam08206
471473003238	RNB domain; Region: RNB; pfam00773
471473003239	HMMPfam hit to PF00773, RNB-like protein, score 2.1e-123
471473003240	PS01175 Ribonuclease II family signature
471473003241	Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]; Region: COG1579
471473003242	Putative zinc ribbon domain; Region: DUF164; pfam02591
471473003243	HMMPfam hit to PF02591, Uncharacterized ACR,COG1579,score 2.2e-129
471473003244	KpsF/GutQ family protein; Region: kpsF; TIGR00393
471473003245	KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose...; Region: SIS_Kpsf; cd05014
471473003246	putative active site [active]
471473003247	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein.  These APIs catalyze the conversion of the pentose pathway...; Region: CBS_pair_KpsF_GutQ_assoc; cd04604
471473003248	HMMPfam hit to PF00571, CBS domain pair, score 3.6e-16
471473003249	HMMPfam hit to PF01380, SIS domain, score 1.2e-19
471473003250	branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed; Region: PRK11856
471473003251	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
471473003252	E3 interaction surface; other site
471473003253	lipoyl attachment site [posttranslational modification]; other site
471473003254	e3 binding domain; Region: E3_binding; pfam02817
471473003255	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
471473003256	HMMPfam hit to PF00198, 2-oxoacid dehydrogenases acyltransferas, score 2.6e-110
471473003257	HMMPfam hit to PF02817, e3 binding domain, score 1.5e-13
471473003258	HMMPfam hit to PF00364, Biotin-requiring enzyme,score 3.1e-18
471473003259	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site
471473003260	Sodium:dicarboxylate symporter family; Region: SDF; pfam00375
471473003261	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
471473003262	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 8.5e-107
471473003263	8 probable transmembrane helices predicted for CTL0658 by TMHMM2.0 at aa 7-21, 36-58, 71-93,136-158,179-198, 213-235, 312-334 and 344-366
471473003264	tetraacyldisaccharide 4'-kinase; Reviewed; Region: lpxK; PRK00652
471473003265	tetraacyldisaccharide 4'-kinase; Region: lpxK; TIGR00682
471473003266	HMMPfam hit to PF02606, Tetraacyldisaccharide-1-P 4'-kinase, score 4.3e-222
471473003267	PS00136 Serine proteases, subtilase family,aspartic acid active site
471473003268	rRNA methylases [Translation, ribosomal structure and biogenesis]; Region: SpoU; COG0566
471473003269	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; pfam08032
471473003270	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
471473003271	HMMPfam hit to PF00588, SpoU rRNA Methylase family,score 6.1e-45
471473003272	HMMPfam hit to PF08032, RNA 2'-O ribose methyltransferase subs, score 7.7e-13
471473003273	Predicted SAM-dependent methyltransferases [General function prediction only]; Region: COG1092
471473003274	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
471473003275	S-adenosylmethionine binding site [chemical binding]; other site
471473003276	riboflavin synthase subunit alpha; Provisional; Region: PRK13020
471473003277	Lumazine binding domain; Region: Lum_binding; pfam00677
471473003278	Lumazine binding domain; Region: Lum_binding; pfam00677
471473003279	HMMPfam hit to PF00677, Lumazine binding domain,score 5.4e-26
471473003280	HMMPfam hit to PF00677, Lumazine binding domain,score 2.7e-13
471473003281	Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]; Region: COG1327
471473003282	ATP cone domain; Region: ATP-cone; pfam03477
471473003283	HMMPfam hit to PF03477, ATP cone domain, score 1.1e-29
471473003284	DnaK suppressor protein [Signal transduction mechanisms]; Region: DksA; COG1734
471473003285	HMMPfam hit to PF01258, Prokaryotic dksA/traR C4-type zinc finge, score 1.7e-07
471473003286	Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: LspA; COG0597
471473003287	5 probable transmembrane helices predicted for CTL0665 by TMHMM2.0 at aa 5-27, 40-62, 66-88, 101-123 and 138-160
471473003288	HMMPfam hit to PF01252, Signal peptidase (SPase) II,score 5.5e-16
471473003289	Na+/alanine symporter [Amino acid transport and metabolism]; Region: AlsT; COG1115
471473003290	amino acid carrier protein; Region: agcS; TIGR00835
471473003291	11 probable transmembrane helices predicted for CTL0666 by TMHMM2.0 at aa 15-32, 70-92, 102-124,151-173,186-203, 210-232, 242-264, 303-325, 350-372,385-402 and 407-429
471473003292	HMMPfam hit to PF01235, Sodium:alanine symporter family, score 1.2e-16
471473003293	poly(A) polymerase; Region: pcnB; TIGR01942
471473003294	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
471473003295	active site
471473003296	NTP binding site [chemical binding]; other site
471473003297	metal binding triad [ion binding]; metal-binding site
471473003298	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
471473003299	HMMPfam hit to PF01743, Poly A polymerase family,score 7.9e-72
471473003300	lipid-A-disaccharide synthase; Reviewed; Region: lpxB; PRK01021
471473003301	Lipid A Biosynthesis N-terminal domain; Region: LAB_N; pfam07578
471473003302	Predicted membrane protein [Function unknown]; Region: COG3952
471473003303	ipid-A-disaccharide synthase; Provisional; Region: PRK14089
471473003304	6 probable transmembrane helices predicted for CTL0668 by TMHMM2.0 at aa 10-32, 39-61, 65-82,95-117,137-156 and 168-190
471473003305	HMMPfam hit to PF07578, Lipid A Biosynthesis N-terminal domain, score 9.7e-38
471473003306	HMMPfam hit to PF07578, Lipid A Biosynthesis N-terminal domain, score 6.6e-39
471473003307	HMMPfam hit to PF02684, Lipid-A-disaccharide synthetase, score 2e-227
471473003308	Chlamydial polymorphic outer membrane protein repeat; Region: POMP_repeat; TIGR01376
471473003309	Chlamydia polymorphic membrane protein middle domain; Region: ChlamPMP_M; pfam07548
471473003310	Autotransporter beta-domain; Region: Autotransporter; pfam03797
471473003311	1 probable transmembrane helix predicted for CTL0669 by TMHMM2.0 at aa 24-46
471473003312	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 3.5
471473003313	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.01
471473003314	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.0052
471473003315	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.26
471473003316	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.0052
471473003317	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.11
471473003318	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.13
471473003319	HMMPfam hit to PF07548, Chlamydia polymorphic membrane protei, score 1.4e-55
471473003320	HMMPfam hit to PF03797, Autotransporter beta-domain,score 1.2e-40
471473003321	Chlamydia polymorphic membrane protein middle domain; Region: ChlamPMP_M; pfam07548
471473003322	Autotransporter beta-domain; Region: Autotransporter; pfam03797
471473003323	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.3
471473003324	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.34
471473003325	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 2.2
471473003326	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 1.4
471473003327	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.066
471473003328	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 2.1
471473003329	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 44
471473003330	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 9.5
471473003331	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.39
471473003332	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 4.5
471473003333	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.42
471473003334	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 8
471473003335	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.021
471473003336	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.98
471473003337	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 4.6
471473003338	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.65
471473003339	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.034
471473003340	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 12
471473003341	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 4.1
471473003342	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 44
471473003343	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 13
471473003344	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 2
471473003345	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.74
471473003346	HMMPfam hit to PF07548, Chlamydia polymorphic membrane protei, score 1.7e-54
471473003347	HMMPfam hit to PF03797, Autotransporter beta-domain,score 4.3e-40
471473003348	Chlamydia polymorphic membrane protein middle domain; Region: ChlamPMP_M; pfam07548
471473003349	Chlamydia polymorphic membrane protein middle domain; Region: ChlamPMP_M; pfam07548
471473003350	Autotransporter beta-domain; Region: Autotransporter; pfam03797
471473003351	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 42
471473003352	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 9.7
471473003353	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.33
471473003354	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 46
471473003355	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.95
471473003356	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 10
471473003357	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.041
471473003358	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.04
471473003359	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.039
471473003360	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 2
471473003361	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 36
471473003362	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.31
471473003363	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.19
471473003364	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.62
471473003365	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 9.5
471473003366	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 0.35
471473003367	HMMPfam hit to PF07548, Chlamydia polymorphic membrane protei, score 1.5e-51
471473003368	HMMPfam hit to PF03797, Autotransporter beta-domain,score 9e-40
471473003369	Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site is formed in the interface between...; Region: TroA-like; cl00262
471473003370	Periplasmic solute binding protein family; Region: SBP_bac_9; pfam01297
471473003371	intersubunit interface [polypeptide binding]; other site
471473003372	HMMPfam hit to PF01297, Periplasmic solute binding protein family, score 8.4e-116
471473003373	ATP-binding cassette domain of the metal-type transporters; Region: ABC_Metallic_Cations; cd03235
471473003374	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
471473003375	HMMPfam hit to PF00005, ABC transporter, score 8.4e-42
471473003376	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003377	PS00211 ABC transporters family signature
471473003378	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
471473003379	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
471473003380	ABC-ATPase subunit  interface; other site
471473003381	dimer interface [polypeptide binding]; other site
471473003382	putative PBP binding regions; other site
471473003383	HMMPfam hit to PF00950, ABC 3 transport family,score 1.1e-57
471473003384	8 probable transmembrane helices predicted for CTL0674 by TMHMM2.0 at aa 15-37, 44-66, 70-92,101-123,143-165, 186-208, 228-250 and 255-277
471473003385	GTPase CgtA; Reviewed; Region: obgE; PRK12299
471473003386	GTP1/OBG; Region: GTP1_OBG; pfam01018
471473003387	Obg GTPase; Region: Obg; cd01898
471473003388	G1 box; other site
471473003389	GTP/Mg2+ binding site [chemical binding]; other site
471473003390	Switch I region; other site
471473003391	G2 box; other site
471473003392	G3 box; other site
471473003393	Switch II region; other site
471473003394	G4 box; other site
471473003395	G5 box; other site
471473003396	HMMPfam hit to PF01926, GTPase of unknown function,score 1.8e-39
471473003397	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003398	HMMPfam hit to PF01018, GTP1/OBG, score 1.4e-66
471473003399	50S ribosomal protein L27; Validated; Region: rpmA; PRK05435
471473003400	HMMPfam hit to PF01016, Ribosomal L27 protein,score 1.4e-40
471473003401	Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]; Region: RplU; COG0261
471473003402	HMMPfam hit to PF00829, Ribosomal prokaryotic L21 protein, score 1.3e-43
471473003403	Uncharacterized conserved protein [Function unknown]; Region: COG2928
471473003404	2 probable transmembrane helices predicted for CTL0678 by TMHMM2.0 at aa 23-45 and 78-100
471473003405	HMMPfam hit to PF04367, Protein of unknown function (DUF502), score 4.3e-89
471473003406	Chlam_Verruc_Plancto small basic protein; Region: Chlam_Ver_rRNA; TIGR04137
471473003407	Predicted metal-dependent hydrolase [General function prediction only]; Region: COG0319
471473003408	HMMPfam hit to PF02130, Uncharacterized protein family UPF0054, score 0.0012
471473003409	FOG: CBS domain [General function prediction only]; Region: COG0517
471473003410	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
471473003411	Transporter associated domain; Region: CorC_HlyC; smart01091
471473003412	3 probable transmembrane helices predicted for CTL0682 by TMHMM2.0 at aa 2-19, 42-64 and 71-93
471473003413	HMMPfam hit to PF00571, CBS domain pair, score 6.7e-20
471473003414	HMMPfam hit to PF03471, Transporter associated domain, score 7.8e-22
471473003415	Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043
471473003416	anti sigma factor interaction site; other site
471473003417	regulatory phosphorylation site [posttranslational modification]; other site
471473003418	HMMPfam hit to PF01740, STAS domain, score 6e-30
471473003419	Protein of unknown function (DUF3604); Region: DUF3604; pfam12228
471473003420	hypothetical protein; Provisional; Region: PRK05926
471473003421	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
471473003422	FeS/SAM binding site; other site
471473003423	HMMPfam hit to PF04055, Radical SAM superfamily,score 3.3e-16
471473003424	Predicted periplasmic solute-binding protein [General function prediction only]; Region: COG1427
471473003425	HMMPfam hit to PF02621, Uncharacterized ACR,COG1427,score 4.8e-161
471473003426	Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226
471473003427	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
471473003428	S-adenosylmethionine binding site [chemical binding]; other site
471473003429	The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid.  N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a...; Region: Ntn_hydrolase; cl00467
471473003430	HMMPfam hit to PF01209, ubiE/COQ5 methyltransferase family, score 2.3e-15
471473003431	HMMPfam hit to PF08241, Methyltransferase domain,score 1.1e-22
471473003432	HMMPfam hit to PF08242, Methyltransferase domain,score 1.7e-09
471473003433	Uncharacterized protein family (UPF0158); Region: UPF0158; pfam03682
471473003434	HMMPfam hit to PF03682, Uncharacterised protein family (UPF0158), score 9e-120
471473003435	diaminopimelate epimerase; Region: DapF; TIGR00652
471473003436	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
471473003437	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
471473003438	HMMPfam hit to PF01678, Diaminopimelate epimerase,score 1.5e-09
471473003439	HMMPfam hit to PF01678, Diaminopimelate epimerase,score 2.5e-05
471473003440	PS01326 Diaminopimelate epimerase signature
471473003441	ATP-dependent Clp protease proteolytic subunit; Reviewed; Region: PRK12553
471473003442	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
471473003443	oligomer interface [polypeptide binding]; other site
471473003444	active site residues [active]
471473003445	HMMPfam hit to PF00574, Clp protease, score 1.2e-89
471473003446	PS00382 Endopeptidase Clp histidine active site
471473003447	serine hydroxymethyltransferase; Provisional; Region: PRK13580
471473003448	Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl...; Region: SHMT; cd00378
471473003449	dimer interface [polypeptide binding]; other site
471473003450	active site
471473003451	glycine-pyridoxal phosphate binding site [chemical binding]; other site
471473003452	folate binding site [chemical binding]; other site
471473003453	HMMPfam hit to PF00464, Serine hydroxymethyltransferase, score 2.9e-138
471473003454	PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site
471473003455	uroporphyrinogen-III synthase; Reviewed; Region: hemD; PRK05928
471473003456	Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in...; Region: HemD; cd06578
471473003457	active site
471473003458	HMMPfam hit to PF02602, Uroporphyrinogen-III synthase HemD, score 2.5e-61
471473003459	MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis; Region: MECDP_synthase; cd00554
471473003460	homotrimer interaction site [polypeptide binding]; other site
471473003461	zinc binding site [ion binding]; other site
471473003462	CDP-binding sites; other site
471473003463	HMMPfam hit to PF02542, YgbB family, score 2.6e-89
471473003464	Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]; Region: CysJ; COG0369
471473003465	Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport...; Region: FNR_like; cl06868
471473003466	FAD binding pocket [chemical binding]; other site
471473003467	conserved FAD binding motif [chemical binding]; other site
471473003468	phosphate binding motif [ion binding]; other site
471473003469	beta-alpha-beta structure motif; other site
471473003470	NAD binding pocket [chemical binding]; other site
471473003471	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 1.2e-13
471473003472	HMMPfam hit to PF00667, FAD binding domain, score 1.7e-07
471473003473	30S ribosomal protein S10; Reviewed; Region: rpsJ; PRK00596
471473003474	HMMPfam hit to PF00338, Ribosomal protein S10p/S20e,score 3e-58
471473003475	PS00361 Ribosomal protein S10 signature
471473003476	elongation factor G; Reviewed; Region: PRK12739
471473003477	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
471473003478	G1 box; other site
471473003479	putative GEF interaction site [polypeptide binding]; other site
471473003480	GTP/Mg2+ binding site [chemical binding]; other site
471473003481	Switch I region; other site
471473003482	G2 box; other site
471473003483	G3 box; other site
471473003484	Switch II region; other site
471473003485	G4 box; other site
471473003486	G5 box; other site
471473003487	EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis...; Region: EFG_mtEFG_II; cd04088
471473003488	EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2...; Region: EFG_mtEFG1_IV; cd01434
471473003489	EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G.  Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region: EFG_mtEFG_C; cd03713
471473003490	HMMPfam hit to PF00679, Elongation factor G C-terminus, score 1.8e-44
471473003491	HMMPfam hit to PF03764, Elongation factor G, domain IV, score 6.9e-66
471473003492	HMMPfam hit to PF03144, Elongation factor Tu domain,score 2.1e-18
471473003493	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 1.2e-107
471473003494	PS00301 GTP-binding elongation factors signature
471473003495	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003496	30S ribosomal protein S7; Validated; Region: PRK05302
471473003497	HMMPfam hit to PF00177, Ribosomal protein S7p/S5e,score 1.5e-95
471473003498	PS00052 Ribosomal protein S7 signature
471473003499	S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368
471473003500	S17 interaction site [polypeptide binding]; other site
471473003501	S8 interaction site; other site
471473003502	16S rRNA interaction site [nucleotide binding]; other site
471473003503	streptomycin interaction site [chemical binding]; other site
471473003504	23S rRNA interaction site [nucleotide binding]; other site
471473003505	aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site
471473003506	HMMPfam hit to PF00164, Ribosomal protein S12,score 5e-70
471473003507	PS00055 Ribosomal protein S12 signature
471473003508	2 probable transmembrane helices predicted for CTL0699 by TMHMM2.0 at aa 31-53 and 63-85
471473003509	Periplasmic protease [Cell envelope biogenesis, outer membrane]; Region: Prc; COG0793
471473003510	PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988
471473003511	protein binding site [polypeptide binding]; other site
471473003512	C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560
471473003513	Catalytic dyad [active]
471473003514	C-terminal domain of tail specific protease (DUF3340); Region: DUF3340; pfam11818
471473003515	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 2e-13
471473003516	HMMPfam hit to PF03572, Peptidase family S41, score 2.4e-57
471473003517	Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); Region: CRPA; pfam05745
471473003518	HMMPfam hit to PF05745, Chlamydia 15 kDa cysteine-rich outer membran, score 9.3e-81
471473003519	2 probable transmembrane helices predicted for CTL0701 by TMHMM2.0 at aa 43-65 and 69-88
471473003520	Chlamydia cysteine-rich outer membrane protein 6; Region: Chlam_OMP6; pfam03504
471473003521	Domain of unknown function DUF11; Region: DUF11; pfam01345
471473003522	Domain of unknown function DUF11; Region: DUF11; pfam01345
471473003523	HMMPfam hit to PF01345, Domain of unknown function DUF11, score 3.5e-18
471473003524	HMMPfam hit to PF01345, Domain of unknown function DUF11, score 1.4e-17
471473003525	HMMPfam hit to PF03504, Chlamydia cysteine-rich outer membrane pro, score 1.4e-78
471473003526	1 probable transmembrane helix predicted for CTL0702 by TMHMM2.0 at aa 13-32
471473003527	Chlamydia cysteine-rich outer membrane protein 3; Region: Chlam_OMP3; pfam03503
471473003528	HMMPfam hit to PF03503, Chlamydia cysteine-rich outer membrane pro, score 1.1e-32
471473003529	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473003530	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473003531	glutamyl-tRNA synthetase; Reviewed; Region: gltX; PRK01406
471473003532	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
471473003533	HIGH motif; other site
471473003534	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
471473003535	active site
471473003536	KMSKS motif; other site
471473003537	HMMPfam hit to PF00749, tRNA synthetases class I (E and Q), cata, score 3.9e-157
471473003538	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
471473003539	Helix-turn-helix domain; Region: HTH_17; pfam12728
471473003540	Helix-turn-helix domain; Region: HTH_17; cl17695
471473003541	single-stranded-DNA-specific exonuclease RecJ; Region: recJ; TIGR00644
471473003542	DHH family; Region: DHH; pfam01368
471473003543	DHHA1 domain; Region: DHHA1; pfam02272
471473003544	HMMPfam hit to PF02272, DHHA1 domain, score 1.1e-13
471473003545	HMMPfam hit to PF01368, DHH family, score 4.8e-43
471473003546	HMMPfam hit to PF02355, Protein export membrane protein, score 3.2e-97
471473003547	12 probable transmembrane helices predicted for CTL0708 by TMHMM2.0 at aa 9-31, 904-921, 923-945,955-977,998-1020, 1035-1057, 1085-1107, 1232-1251,1258-1280,1290-1309, 1340-1362 and 1367-1389
471473003548	PS00141 Eukaryotic and viral aspartyl proteases active site
471473003549	HMMPfam hit to PF07549, SecD/SecF GG Motif, score 0.00038
471473003550	PS00037 Myb DNA-binding domain repeat signature 1
471473003551	2 probable transmembrane helices predicted for CTL0709 by TMHMM2.0 at aa 43-65 and 69-88
471473003552	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
471473003553	undecaprenyl pyrophosphate synthase; Provisional; Region: PRK14840
471473003554	Undecaprenyl pyrophosphate synthase [Lipid metabolism]; Region: UppS; COG0020
471473003555	catalytic residue [active]
471473003556	putative FPP diphosphate  binding site; other site
471473003557	putative FPP binding hydrophobic cleft; other site
471473003558	dimer interface [polypeptide binding]; other site
471473003559	putative IPP diphosphate binding site; other site
471473003560	HMMPfam hit to PF01255, Putative undecaprenyl diphosphate syntha, score 4.3e-95
471473003561	PS00962 Ribosomal protein S2 signature 1
471473003562	PS01066 Undecaprenyl pyrophosphate synthetase family signature
471473003563	Cytidylyltransferase family; Region: CTP_transf_1; pfam01148
471473003564	CDP-diglyceride synthetase [Lipid metabolism]; Region: CdsA; COG0575
471473003565	HMMPfam hit to PF01148, Cytidylyltransferase family,score 4.3e-81
471473003566	7 probable transmembrane helices predicted for CTL0711 by TMHMM2.0 at aa 28-50, 71-90, 100-117,124-146,161-183, 203-222 and 232-251
471473003567	Cytidylate kinase [Nucleotide transport and metabolism]; Region: Cmk; COG0283
471473003568	Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020
471473003569	CMP-binding site; other site
471473003570	The sites determining sugar specificity; other site
471473003571	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003572	HMMPfam hit to PF02224, Cytidylate kinase, score 3.4e-86
471473003573	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
471473003574	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
471473003575	putative acyl-acceptor binding pocket; other site
471473003576	HMMPfam hit to PF01553, Acyltransferase, score 7.1e-26
471473003577	arginine-tRNA ligase; Region: PLN02286
471473003578	Arginyl tRNA synthetase N terminal domain; Region: Arg_tRNA_synt_N; pfam03485
471473003579	catalytic core domain of arginyl-tRNA synthetases; Region: ArgRS_core; cd00671
471473003580	active site
471473003581	HIGH motif; other site
471473003582	KMSK motif region; other site
471473003583	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
471473003584	tRNA binding surface [nucleotide binding]; other site
471473003585	anticodon binding site; other site
471473003586	HMMPfam hit to PF03485, Arginyl tRNA synthetase N terminal do, score 1.8e-20
471473003587	HMMPfam hit to PF00750, tRNA synthetases class I (R), score 9.5e-110
471473003588	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
471473003589	HMMPfam hit to PF05746, DALR anticodon binding domain, score 6.3e-37
471473003590	PS00527 Ribosomal protein S14 signature
471473003591	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Region: murA; TIGR01072
471473003592	UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555
471473003593	hinge; other site
471473003594	active site
471473003595	HMMPfam hit to PF00275, EPSP synthase (3-phosphoshikimate 1-car, score 3.6e-118
471473003596	Domain of Unknown Function (DUF1547); Region: DUF1547; pfam07577
471473003597	Domain of Unknown Function (DUF1547); Region: DUF1547; pfam07577
471473003598	HMMPfam hit to PF07577, Domain of Unknown Function (DUF1547), score 2.3e-29
471473003599	HMMPfam hit to PF07577, Domain of Unknown Function (DUF1547), score 3.3e-29
471473003600	DNA-binding regulatory protein, YebC/PmpR family; Region: TIGR01033
471473003601	HMMPfam hit to PF01709, Domain of unknown function DUF28, score 2.7e-134
471473003602	Acetyltransferases [General function prediction only]; Region: RimI; COG0456
471473003603	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
471473003604	Coenzyme A binding pocket [chemical binding]; other site
471473003605	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.5e-19
471473003606	peptide chain release factor 2; Validated; Region: prfB; PRK00578
471473003607	PCRF domain; Region: PCRF; pfam03462
471473003608	RF-1 domain; Region: RF-1; pfam00472
471473003609	HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase domain, score 7e-75
471473003610	PS00745 Prokaryotic-type class I peptide chain release factors signature
471473003611	HMMPfam hit to PF03462, PCRF domain, score 1.3e-52
471473003612	SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]; Region: COG5531
471473003613	SWI complex, BAF60b domains; Region: SWIB; smart00151
471473003614	HMMPfam hit to PF02201, SWIB/MDM2 domain, score 1.5e-39
471473003615	Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain; Region: MPP_YkuE_C; cd07385
471473003616	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
471473003617	putative active site [active]
471473003618	putative metal binding site [ion binding]; other site
471473003619	1 probable transmembrane helix predicted for CTL0721 by TMHMM2.0 at aa 2-24
471473003620	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 5.8e-23
471473003621	CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516
471473003622	substrate binding site; other site
471473003623	dimer interface; other site
471473003624	HMMPfam hit to PF01128, Uncharacterized protein family UPF0007, score 2.7e-25
471473003625	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
471473003626	Eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA; Region: PseudoU_synth_EcTruA; cd02570
471473003627	dimerization interface 3.5A [polypeptide binding]; other site
471473003628	active site
471473003629	HMMPfam hit to PF01416, tRNA pseudouridine synthase,score 3.1e-32
471473003630	HMMPfam hit to PF01416, tRNA pseudouridine synthase,score 3e-37
471473003631	Predicted phosphatase/phosphohexomutase [General function prediction only]; Region: COG0637
471473003632	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
471473003633	active site
471473003634	motif I; other site
471473003635	motif II; other site
471473003636	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 4.8e-22
471473003637	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473003638	Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852
471473003639	PAS domain; Region: PAS; smart00091
471473003640	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
471473003641	dimer interface [polypeptide binding]; other site
471473003642	phosphorylation site [posttranslational modification]
471473003643	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
471473003644	ATP binding site [chemical binding]; other site
471473003645	Mg2+ binding site [ion binding]; other site
471473003646	G-X-G motif; other site
471473003647	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 7.4e-20
471473003648	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 5.6e-22
471473003649	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
471473003650	Response regulator receiver domain; Region: Response_reg; pfam00072
471473003651	active site
471473003652	phosphorylation site [posttranslational modification]
471473003653	intermolecular recognition site; other site
471473003654	dimerization interface [polypeptide binding]; other site
471473003655	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
471473003656	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
471473003657	Walker A motif; other site
471473003658	ATP binding site [chemical binding]; other site
471473003659	Walker B motif; other site
471473003660	arginine finger; other site
471473003661	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.5e-35
471473003662	HMMPfam hit to PF00158, Sigma-54 interaction domain,score 7e-137
471473003663	PS00688 Sigma-54 interaction domain C-terminal part signature
471473003664	Type I restriction enzyme R protein N terminus (HSDR_N); Region: HSDR_N_2; pfam13588
471473003665	Recombination protein O N terminal; Region: RecO_N; pfam11967
471473003666	Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]; Region: RecO; COG1381
471473003667	Recombination protein O C terminal; Region: RecO_C; pfam02565
471473003668	HMMPfam hit to PF02565, Recombination protein O,score 1.4e-131
471473003669	1 probable transmembrane helix predicted for CTL0731 by TMHMM2.0 at aa 7-29
471473003670	Uncharacterized conserved protein [Function unknown]; Region: COG1723
471473003671	HMMPfam hit to PF02582, Uncharacterised ACR, YagE family COG1723, score 5.4e-136
471473003672	hypothetical protein; Provisional; Region: PRK14377
471473003673	HMMPfam hit to PF01809, Domain of unknown function DUF37, score 4e-40
471473003674	1 probable transmembrane helix predicted for CTL0735 by TMHMM2.0 at aa 24-43
471473003675	phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629
471473003676	tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain.  PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate...; Region: tRNA_bind_bactPheRS; cd02796
471473003677	putative tRNA-binding site [nucleotide binding]; other site
471473003678	B3/4 domain; Region: B3_4; pfam03483
471473003679	tRNA synthetase B5 domain; Region: B5; smart00874
471473003680	Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA,  PheRS is an...; Region: PheRS_beta_core; cd00769
471473003681	dimer interface [polypeptide binding]; other site
471473003682	motif 1; other site
471473003683	motif 3; other site
471473003684	motif 2; other site
471473003685	Ferredoxin-fold anticodon binding domain; Region: FDX-ACB; pfam03147
471473003686	HMMPfam hit to PF01588, Putative tRNA binding domain, score 6.1e-36
471473003687	HMMPfam hit to PF03483, B3/4 domain, score 2.2e-77
471473003688	HMMPfam hit to PF03484, tRNA synthetase B5 domain,score 2.4e-24
471473003689	HMMPfam hit to PF03147, Ferredoxin-fold anticodon binding domain, score 1.5e-38
471473003690	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
471473003691	Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]; Region: Ada; COG0350
471473003692	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
471473003693	DNA binding site [nucleotide binding]
471473003694	active site
471473003695	HMMPfam hit to PF01035, 6-O-methylguanine DNA methyltransferase, score 3.8e-05
471473003696	PS00374 Methylated-DNA--protein-cysteine methyltransferase active site
471473003697	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
471473003698	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
471473003699	dimer interface [polypeptide binding]; other site
471473003700	conserved gate region; other site
471473003701	putative PBP binding loops; other site
471473003702	ABC-ATPase subunit interface; other site
471473003703	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3.3e-31
471473003704	8 probable transmembrane helices predicted for CTL0739 by TMHMM2.0 at aa 20-42, 72-94, 101-123,378-400,412-434, 439-461, 490-512 and 546-568
471473003705	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
471473003706	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
471473003707	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1e-27
471473003708	5 probable transmembrane helices predicted for CTL0740 by TMHMM2.0 at aa 239-261, 268-290, 330-347,392-414 and 434-453
471473003709	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
471473003710	The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like; cl01709
471473003711	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 1.5e-21
471473003712	Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Region: CDA1; COG0726
471473003713	Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands; Region: CE4_NodB_like_5s_6s; cd10918
471473003714	putative active site [active]
471473003715	putative metal binding site [ion binding]; other site
471473003716	HMMPfam hit to PF01522, Polysaccharide deacetylase,score 8.5e-05
471473003717	1 probable transmembrane helix predicted for CTL0743 by TMHMM2.0 at aa 12-34
471473003718	2 probable transmembrane helices predicted for CTL0744 by TMHMM2.0 at aa 40-62 and 82-104
471473003719	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
471473003720	binding surface
471473003721	TPR motif; other site
471473003722	2 probable transmembrane helices predicted for CTL0745 by TMHMM2.0 at aa 30-52 and 57-79
471473003723	Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_N; cd03411
471473003724	Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]; Region: HemH; COG0276
471473003725	C-terminal domain interface [polypeptide binding]; other site
471473003726	active site
471473003727	Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_C; cd00419
471473003728	active site
471473003729	N-terminal domain interface [polypeptide binding]; other site
471473003730	HMMPfam hit to PF00762, Ferrochelatase, score 8.3e-145
471473003731	PS00534 Ferrochelatase signature
471473003732	ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]; Region: HisJ; COG0834
471473003733	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
471473003734	substrate binding pocket [chemical binding]; other site
471473003735	membrane-bound complex binding site; other site
471473003736	hinge residues; other site
471473003737	Conserved hypothetical protein 95; Region: Cons_hypoth95; pfam03602
471473003738	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
471473003739	S-adenosylmethionine binding site [chemical binding]; other site
471473003740	HMMPfam hit to PF03602, Conserved hypothetical protein, score 4.8e-86
471473003741	PS00092 N-6 Adenine-specific DNA methylases signature
471473003742	Predicted phosphohydrolase [General function prediction only]; Region: COG1768
471473003743	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
471473003744	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 2.1e-16
471473003745	ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]; Region: GlgC; COG0448
471473003746	ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch; Region: ADP_Glucose_PP; cd02508
471473003747	ligand binding site; other site
471473003748	oligomer interface; other site
471473003749	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
471473003750	Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and...; Region: LbH_G1P_AT_C; cd04651
471473003751	N-terminal domain interface [polypeptide binding]; other site
471473003752	sulfate 1 binding site; other site
471473003753	HMMPfam hit to PF00483, Nucleotidyl transferase,score 1.6e-48
471473003754	PS00809 ADP-glucose pyrophosphorylase signature 2
471473003755	transcription termination factor Rho; Region: rho; TIGR00767
471473003756	Rho termination factor, N-terminal domain; Region: Rho_N; pfam07498
471473003757	Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA...; Region: Rho_CSD; cd04459
471473003758	RNA binding site [nucleotide binding]; other site
471473003759	Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the...; Region: rho_factor; cd01128
471473003760	multimer interface [polypeptide binding]; other site
471473003761	Walker A motif; other site
471473003762	ATP binding site [chemical binding]; other site
471473003763	Walker B motif; other site
471473003764	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleoti, score 4.3e-74
471473003765	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003766	HMMPfam hit to PF07497, Rho termination factor,RNA-binding doma, score 4.3e-55
471473003767	HMMPfam hit to PF07498, Rho termination factor,N-terminal domai, score 1.6e-13
471473003768	Dephospho-CoA kinase [Coenzyme metabolism]; Region: CoaE; COG0237
471473003769	Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022
471473003770	CoA-binding site [chemical binding]; other site
471473003771	ATP-binding [chemical binding]; other site
471473003772	HMMPfam hit to PF01121, Dephospho-CoA kinase, score 1.3e-17
471473003773	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003774	DNA polymerase I; Provisional; Region: PRK05755
471473003775	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
471473003776	active site
471473003777	metal binding site 1 [ion binding]; metal-binding site
471473003778	putative 5' ssDNA interaction site; other site
471473003779	metal binding site 3; metal-binding site
471473003780	metal binding site 2 [ion binding]; metal-binding site
471473003781	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
471473003782	putative DNA binding site [nucleotide binding]; other site
471473003783	putative metal binding site [ion binding]; other site
471473003784	3'-5' exonuclease; Region: 35EXOc; smart00474
471473003785	active site
471473003786	substrate binding site [chemical binding]; other site
471473003787	catalytic site [active]
471473003788	Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication; Region: DNA_pol_A_pol_I_C; cd08637
471473003789	active site
471473003790	DNA binding site [nucleotide binding]
471473003791	catalytic site [active]
471473003792	HMMPfam hit to PF00476, DNA polymerase family A,score 2.3e-128
471473003793	HMMPfam hit to PF01367, 5'-3' exonuclease,C-terminal SAM fold, score 1e-52
471473003794	HMMPfam hit to PF02739, 5'-3' exonuclease,N-terminal resolvase-, score 5.5e-86
471473003795	Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: SppA; COG0616
471473003796	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023
471473003797	oligomer interface [polypeptide binding]; other site
471473003798	tandem repeat interface [polypeptide binding]; other site
471473003799	active site residues [active]
471473003800	HMMPfam hit to PF01343, Peptidase family S49, score 1.3e-31
471473003801	1 probable transmembrane helix predicted for CTL0755 by TMHMM2.0 at aa 12-34
471473003802	TLC ATP/ADP transporter; Region: TLC; pfam03219
471473003803	HMMPfam hit to PF03219, TLC ATP/ADP transporter,score 0
471473003804	12 probable transmembrane helices predicted for CTL0756 by TMHMM2.0 at aa 21-43, 58-80, 93-115,148-170,183-205, 220-242, 287-309, 329-351, 358-380,390-409,448-470 and 475-497
471473003805	Phosphatidylglycerophosphate synthase [Lipid metabolism]; Region: PgsA; COG0558
471473003806	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 7.3e-27
471473003807	4 probable transmembrane helices predicted for CTL0757 by TMHMM2.0 at aa 13-35, 82-104, 116-135 and 139-156
471473003808	PS00379 CDP-alcohol phosphatidyltransferases signature
471473003809	1 probable transmembrane helix predicted for CTL0758 by TMHMM2.0 at aa 4-21
471473003810	replicative DNA helicase; Provisional; Region: PRK06321
471473003811	DnaB-like helicase N terminal domain; Region: DnaB; pfam00772
471473003812	DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984
471473003813	Walker A motif; other site
471473003814	ATP binding site [chemical binding]; other site
471473003815	Walker B motif; other site
471473003816	DNA binding loops [nucleotide binding]
471473003817	HMMPfam hit to PF00772, DnaB-like helicase N terminal domain, score 7.9e-37
471473003818	HMMPfam hit to PF03796, DnaB-like helicase C terminal domain, score 8.9e-123
471473003819	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003820	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated; Region: PRK05192
471473003821	tRNA (uracil-5-)-methyltransferase Gid; Reviewed; Region: PRK05335
471473003822	NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; COG1206
471473003823	GidA associated domain 3; Region: GIDA_assoc_3; pfam13932
471473003824	HMMPfam hit to PF01134, Glucose inhibited division protein A, score 1.8e-242
471473003825	PS00017 ATP/GTP-binding site motif A (P-loop)
471473003826	PS01280 Glucose inhibited division protein A family signature 1
471473003827	Lipoate-protein ligase A [Coenzyme metabolism]; Region: LplA; COG0095
471473003828	HMMPfam hit to PF03099, Biotin/lipoate A/B protein ligase famil, score 9.3e-10
471473003829	Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413
471473003830	active site
471473003831	multimer interface [polypeptide binding]; other site
471473003832	HMMPfam hit to PF00334, Nucleoside diphosphate kinase, score 9.4e-73
471473003833	PS00469 Nucleoside diphosphate kinases active site
471473003834	Holliday junction DNA helicase RuvA; Reviewed; Region: ruvA; PRK00116
471473003835	RuvA N terminal domain; Region: RuvA_N; pfam01330
471473003836	HMMPfam hit to PF01330, RuvA N terminal domain,score 2.5e-25
471473003837	Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD...; Region: RuvC_resolvase; cd00529
471473003838	active site
471473003839	putative DNA-binding cleft [nucleotide binding]; other site
471473003840	dimer interface [polypeptide binding]; other site
471473003841	HMMPfam hit to PF02075, Crossover junction endodeoxyribonuclease Ruv, score 5.4e-67
471473003842	Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]; Region: AccA; cl17345
471473003843	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]; Region: GapA; COG0057
471473003844	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; pfam00044
471473003845	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
471473003846	HMMPfam hit to PF02800, Glyceraldehyde 3-phosphate dehydrogenase, C-, score 1.7e-106
471473003847	PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site
471473003848	HMMPfam hit to PF00044, Glyceraldehyde 3-phosphate dehydrogenase, NA, score 6.7e-88
471473003849	Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]; Region: RplQ; COG0203
471473003850	HMMPfam hit to PF01196, Ribosomal protein L17,score 5.8e-78
471473003851	PS01167 Ribosomal protein L17 signature
471473003852	DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type; Region: rpoA; TIGR02027
471473003853	N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928
471473003854	alphaNTD - beta interaction site [polypeptide binding]; other site
471473003855	alphaNTD homodimer interface [polypeptide binding]; other site
471473003856	alphaNTD - beta' interaction site [polypeptide binding]; other site
471473003857	Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; pfam03118
471473003858	HMMPfam hit to PF03118, Bacterial RNA polymerase,alpha chain C, score 1.7e-34
471473003859	HMMPfam hit to PF01193, RNA polymerase Rpb3/Rpb11 dimerisation, score 2.8e-19
471473003860	HMMPfam hit to PF01000, RNA polymerase Rpb3/RpoA insert domain, score 1.7e-16
471473003861	30S ribosomal protein S11; Validated; Region: PRK05309
471473003862	HMMPfam hit to PF00411, Ribosomal protein S11,score 5.3e-55
471473003863	PS00054 Ribosomal protein S11 signature
471473003864	30S ribosomal protein S13; Validated; Region: rpsM; PRK05179
471473003865	30S ribosomal protein S13; Region: bact_S13; TIGR03631
471473003866	HMMPfam hit to PF00416, Ribosomal protein S13/S18,score 2.1e-49
471473003867	PS00646 Ribosomal protein S13 signature
471473003868	preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204
471473003869	SecY translocase; Region: SecY; pfam00344
471473003870	HMMPfam hit to PF00344, eubacterial secY protein,score 9.3e-212
471473003871	10 probable transmembrane helices predicted for CTL0772 by TMHMM2.0 at aa 17-39, 73-95, 120-142,157-179,192-214, 229-251, 285-307, 317-339, 384-406 and 410-429
471473003872	PS00756 Protein secY signature 2
471473003873	PS00755 Protein secY signature 1
471473003874	ribosomal protein L15, bacterial/organelle; Region: rplO_bact; TIGR01071
471473003875	HMMPfam hit to PF01305, Ribosomal protein L15 amino terminal re, score 1.1e-62
471473003876	ribosomal protein S5, bacterial/organelle type; Region: rpsE_bact; TIGR01021
471473003877	Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333
471473003878	Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719
471473003879	HMMPfam hit to PF03719, Ribosomal protein S5,C-terminal domai, score 5.5e-42
471473003880	HMMPfam hit to PF00333, Ribosomal protein S5,N-terminal domai, score 1.3e-37
471473003881	PS00585 Ribosomal protein S5 signature
471473003882	Ribosomal L18/L5e:  L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432
471473003883	5S rRNA interface [nucleotide binding]; other site
471473003884	23S rRNA interface [nucleotide binding]; other site
471473003885	L5 interface [polypeptide binding]; other site
471473003886	HMMPfam hit to PF00861, Ribosomal L18p/L5e family,score 8.9e-53
471473003887	50S ribosomal protein L6; Validated; Region: rplF; PRK05498
471473003888	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
471473003889	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
471473003890	HMMPfam hit to PF00347, Ribosomal protein L6, score 3.5e-28
471473003891	PS00525 Ribosomal protein L6 signature 1
471473003892	HMMPfam hit to PF00347, Ribosomal protein L6, score 6.6e-16
471473003893	30S ribosomal protein S8; Validated; Region: rpsH; PRK00136
471473003894	HMMPfam hit to PF00410, Ribosomal protein S8, score 4.1e-68
471473003895	PS00053 Ribosomal protein S8 signature
471473003896	50S ribosomal protein L5; Validated; Region: rplE; PRK00010
471473003897	Ribosomal protein L5; Region: Ribosomal_L5; pfam00281
471473003898	ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673
471473003899	HMMPfam hit to PF00673, ribosomal L5P family C-terminus, score 2.6e-27
471473003900	HMMPfam hit to PF00281, Ribosomal protein L5, score 3e-32
471473003901	PS00358 Ribosomal protein L5 signature
471473003902	PS00041 Bacterial regulatory proteins, araC family signature
471473003903	Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]; Region: RplX; COG0198
471473003904	KOW motif of Ribosomal Protein L26; Region: KOW_RPL26; cd06089
471473003905	RNA binding site [nucleotide binding]; other site
471473003906	HMMPfam hit to PF00467, KOW motif, score 2.2e-08
471473003907	PS01108 Ribosomal protein L24 signature
471473003908	50S ribosomal protein L14; Validated; Region: rplN; PRK05483
471473003909	HMMPfam hit to PF00238, Ribosomal protein L14p/L23e,score 6.5e-80
471473003910	PS00049 Ribosomal protein L14 signature
471473003911	30S ribosomal protein S17; Reviewed; Region: rpsQ; PRK05610
471473003912	HMMPfam hit to PF00366, Ribosomal protein S17,score 1e-37
471473003913	PS00056 Ribosomal protein S17 signature
471473003914	Ribosomal L29 protein/HIP.  L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals.  L29 is located on the surface of the large ribosomal subunit, where it...; Region: Ribosomal_L29_HIP; cd00427
471473003915	23S rRNA interface [nucleotide binding]; other site
471473003916	putative translocon interaction site; other site
471473003917	signal recognition particle (SRP54) interaction site; other site
471473003918	L23 interface [polypeptide binding]; other site
471473003919	trigger factor interaction site; other site
471473003920	HMMPfam hit to PF00831, Ribosomal L29 protein,score 3.4e-15
471473003921	PS00579 Ribosomal protein L29 signature
471473003922	Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433
471473003923	23S rRNA interface [nucleotide binding]; other site
471473003924	5S rRNA interface [nucleotide binding]; other site
471473003925	putative antibiotic binding site [chemical binding]; other site
471473003926	L25 interface [polypeptide binding]; other site
471473003927	L27 interface [polypeptide binding]; other site
471473003928	HMMPfam hit to PF00252, Ribosomal protein L16,score 2.6e-82
471473003929	PS00701 Ribosomal protein L16 signature 2
471473003930	PS00586 Ribosomal protein L16 signature 1
471473003931	ribosomal protein S3, bacterial type; Region: rpsC_bact; TIGR01009
471473003932	K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3  is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel.  The KH...; Region: 30S_S3_KH; cd02412
471473003933	G-X-X-G motif; other site
471473003934	Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189
471473003935	HMMPfam hit to PF00189, Ribosomal protein S3,C-terminal domai, score 5.7e-49
471473003936	PS00548 Ribosomal protein S3 signature
471473003937	HMMPfam hit to PF07650, KH domain, score 7.2e-24
471473003938	HMMPfam hit to PF00417, Ribosomal protein S3,N-terminal domai, score 2.7e-12
471473003939	Ribosomal protein L22/L17e.  L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit.  It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336
471473003940	putative translocon binding site; other site
471473003941	protein-rRNA interface [nucleotide binding]; other site
471473003942	HMMPfam hit to PF00237, Ribosomal protein L22p/L17e,score 7.6e-26
471473003943	30S ribosomal protein S19; Reviewed; Region: rpsS; PRK00357
471473003944	HMMPfam hit to PF00203, Ribosomal protein S19,score 2.9e-45
471473003945	PS00323 Ribosomal protein S19 signature
471473003946	50S ribosomal protein L2; Validated; Region: rplB; PRK09374
471473003947	Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181
471473003948	Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947
471473003949	HMMPfam hit to PF03947, Ribosomal Proteins L2,C-terminal doma, score 1.3e-80
471473003950	PS00467 Ribosomal protein L2 signature
471473003951	HMMPfam hit to PF00181, Ribosomal Proteins L2, RNA binding dom, score 1.6e-41
471473003952	Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Region: RplW; COG0089
471473003953	HMMPfam hit to PF00276, Ribosomal protein L23,score 0.00011
471473003954	PS00215 Mitochondrial energy transfer proteins signature
471473003955	50S ribosomal protein L4; Provisional; Region: rplD; PRK05319
471473003956	HMMPfam hit to PF00573, Ribosomal protein L4/L1 family, score 3.3e-88
471473003957	50S ribosomal protein L3; Validated; Region: rplC; PRK00001
471473003958	HMMPfam hit to PF00297, Ribosomal protein L3, score 3.4e-55
471473003959	2 probable transmembrane helices predicted for CTL0791 by TMHMM2.0 at aa 136-158 and 272-294
471473003960	methionyl-tRNA formyltransferase; Reviewed; Region: fmt; PRK00005
471473003961	Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646
471473003962	putative active site [active]
471473003963	substrate binding site [chemical binding]; other site
471473003964	putative cosubstrate binding site; other site
471473003965	catalytic site [active]
471473003966	C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704
471473003967	substrate binding site [chemical binding]; other site
471473003968	HMMPfam hit to PF02911, Formyl transferase,C-terminal domain, score 6.1e-46
471473003969	HMMPfam hit to PF00551, Formyl transferase, score 1.6e-31
471473003970	Acyl-[acyl carrier protein]; Region: LpxA; COG1043
471473003971	UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic...; Region: LbH_UDP-GlcNAc_AT; cd03351
471473003972	active site
471473003973	PS00101 Hexapeptide-repeat containing-transferases signature
471473003974	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 37
471473003975	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 11
471473003976	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 7.9
471473003977	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.0041
471473003978	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 4.4
471473003979	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.77
471473003980	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 53
471473003981	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.12
471473003982	FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288
471473003983	HMMPfam hit to PF07977, FabA-like domain, score 6.5e-59
471473003984	1 probable transmembrane helix predicted for CTL0794 by TMHMM2.0 at aa 60-82
471473003985	UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]; Region: LpxC; COG0774
471473003986	UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; pfam03331
471473003987	HMMPfam hit to PF03331, UDP-3-O-acyl N-acetylglycosamine deacetylase, score 3.3e-178
471473003988	Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]; Region: Lnt; COG0815
471473003989	Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571
471473003990	putative active site [active]
471473003991	catalytic triad [active]
471473003992	putative dimer interface [polypeptide binding]; other site
471473003993	7 probable transmembrane helices predicted for CTL0796 by TMHMM2.0 at aa 24-46, 55-74, 84-106,113-135,161-183, 190-207 and 509-531
471473003994	HMMPfam hit to PF00795, Carbon-nitrogen hydrolase,score 4e-48
471473003995	Brown fat-inducible thioesterase (BFIT).  Brain acyl-CoA hydrolase (BACH).  These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis; Region: BFIT_BACH; cd03442
471473003996	HMMPfam hit to PF03061, Thioesterase superfamily,score 3.4e-14
471473003997	DNA polymerase III subunit epsilon; Validated; Region: PRK06310
471473003998	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
471473003999	active site
471473004000	catalytic site [active]
471473004001	substrate binding site [chemical binding]; other site
471473004002	Protein of unknown function (DUF3820); Region: DUF3820; cl01411
471473004003	HMMPfam hit to PF00929, Exonuclease, score 3.9e-54
471473004004	Uncharacterized P-loop hydrolase UPF0079; Region: UPF0079; pfam02367
471473004005	HMMPfam hit to PF02367, Uncharacterised P-loop hydrolase UPF0079, score 1.6e-62
471473004006	PS00017 ATP/GTP-binding site motif A (P-loop)
471473004007	Protein of unknown function (DUF2709); Region: DUF2709; pfam10915
471473004008	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
471473004009	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
471473004010	catalytic residues [active]
471473004011	HMMPfam hit to PF00085, Thioredoxin, score 1.1e-38
471473004012	PS00194 Thioredoxin family active site
471473004013	Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]; Region: CspR; COG0219
471473004014	HMMPfam hit to PF00588, SpoU rRNA Methylase family,score 8e-43
471473004015	FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]; Region: FkpA; COG0545
471473004016	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Region: FKBP_N; pfam01346
471473004017	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
471473004018	HMMPfam hit to PF00254, FKBP-type peptidyl-prolyl cis-trans isomeras, score 3.2e-34
471473004019	PS00454 FKBP-type peptidyl-prolyl cis-trans isomerase signature 2
471473004020	PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1
471473004021	HMMPfam hit to PF01346, Domain amino terminal to FKBP-type peptidyl-, score 1e-05
471473004022	aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476
471473004023	EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317
471473004024	dimer interface [polypeptide binding]; other site
471473004025	anticodon binding site; other site
471473004026	Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of...; Region: AspRS_core; cd00777
471473004027	homodimer interface [polypeptide binding]; other site
471473004028	motif 1; other site
471473004029	active site
471473004030	motif 2; other site
471473004031	GAD domain; Region: GAD; pfam02938
471473004032	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
471473004033	active site
471473004034	motif 3; other site
471473004035	HMMPfam hit to PF00152, tRNA synthetases class II (D, K and N), score 2.1e-199
471473004036	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
471473004037	HMMPfam hit to PF02938, GAD domain, score 4.2e-43
471473004038	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
471473004039	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 2.1e-21
471473004040	histidyl-tRNA synthetase; Reviewed; Region: hisS; PRK00037
471473004041	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for...; Region: HisRS-like_core; cd00773
471473004042	dimer interface [polypeptide binding]; other site
471473004043	motif 1; other site
471473004044	active site
471473004045	motif 2; other site
471473004046	motif 3; other site
471473004047	HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859
471473004048	anticodon binding site; other site
471473004049	HMMPfam hit to PF03129, Anticodon binding domain,score 8e-08
471473004050	HMMPfam hit to PF00587, tRNA synthetase class II core domain (, score 3e-47
471473004051	Sugar phosphate permease [Carbohydrate transport and metabolism]; Region: UhpC; COG2271
471473004052	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
471473004053	putative substrate translocation pore; other site
471473004054	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
471473004055	10 probable transmembrane helices predicted for CTL0806 by TMHMM2.0 at aa 29-48, 68-90, 103-125,183-205,263-282, 302-321, 334-351, 361-383, 390-412 and 422-444
471473004056	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.2e-64
471473004057	PS00942 glpT family of transporters signature
471473004058	PS00340 Growth factor and cytokines receptors family signature 2
471473004059	DNA polymerase III subunit alpha; Validated; Region: dnaE; PRK05673
471473004060	Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE3; Region: PHP_PolIIIA_DnaE3; cd12113
471473004061	active site
471473004062	PHP Thumb interface [polypeptide binding]; other site
471473004063	metal binding site [ion binding]; metal-binding site
471473004064	DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains...; Region: DnaE_OBF; cd04485
471473004065	generic binding surface I; other site
471473004066	generic binding surface II; other site
471473004067	HMMPfam hit to PF02811, PHP domain, score 1.4e-65
471473004068	HMMPfam hit to PF07733, Bacterial DNA polymerase III alpha sub, score 7.7e-271
471473004069	TPR repeat; Region: TPR_11; pfam13414
471473004070	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
471473004071	binding surface
471473004072	TPR motif; other site
471473004073	DNA uptake lipoprotein [General function prediction only]; Region: ComL; COG4105
471473004074	HMMPfam hit to PF00515, Tetratricopeptide repeat,score 0.02
471473004075	HMMPfam hit to PF00515, Tetratricopeptide repeat,score 0.3
471473004076	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.0021
471473004077	1 probable transmembrane helix predicted for CTL0810 by TMHMM2.0 at aa 5-27
471473004078	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473004079	Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]; Region: RsbW; COG2172
471473004080	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075
471473004081	Mg2+ binding site [ion binding]; other site
471473004082	D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: DacC; COG1686
471473004083	Beta-lactamase enzyme family; Region: Beta-lactamase2; cl17872
471473004084	2 probable transmembrane helices predicted for CTL0813 by TMHMM2.0 at aa 5-24 and 397-419
471473004085	HMMPfam hit to PF00768, D-alanyl-D-alanine carboxypeptidase, score 9.6e-23
471473004086	tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]; Region: Sun; COG0144
471473004087	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
471473004088	S-adenosylmethionine binding site [chemical binding]; other site
471473004089	HMMPfam hit to PF01189, NOL1/NOP2/sun family, score 2.8e-09
471473004090	branched-chain amino acid uptake carrier; Region: livcs; TIGR00796
471473004091	HMMPfam hit to PF05525, Branched-chain amino acid transport p, score 5.6e-15
471473004092	10 probable transmembrane helices predicted for CTL0817 by TMHMM2.0 at aa 12-34, 44-66, 87-109,124-143,150-171, 202-221, 251-273, 302-324, 336-358 and 363-385
471473004093	Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]; Region: HepA; COG0553
471473004094	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
471473004095	ATP binding site [chemical binding]; other site
471473004096	putative Mg++ binding site [ion binding]; other site
471473004097	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
471473004098	ATP-binding site [chemical binding]; other site
471473004099	HMMPfam hit to PF04434, SWIM zinc finger, score 0.00011
471473004100	HMMPfam hit to PF00176, SNF2 family N-terminal domain, score 5.6e-57
471473004101	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 6.2e-18
471473004102	2 probable transmembrane helices predicted for CTL0819 by TMHMM2.0 at aa 99-121 and 136-153
471473004103	dihydrolipoamide dehydrogenase; Validated; Region: PRK06327
471473004104	Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]; Region: GlpB; cl17730
471473004105	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
471473004106	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
471473004107	HMMPfam hit to PF03486, HI0933-like protein, score 0.00088
471473004108	HMMPfam hit to PF01134, Glucose inhibited division protein A, score 3.8e-18
471473004109	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 9.6e-77
471473004110	PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site
471473004111	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidored, score 2.3e-32
471473004112	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidored, score 1e-48
471473004113	lipoate synthase; Region: lipA; TIGR00510
471473004114	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
471473004115	FeS/SAM binding site; other site
471473004116	HMMPfam hit to PF04055, Radical SAM superfamily,score 2.2e-17
471473004117	Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]; Region: EscJ; COG4669
471473004118	HMMPfam hit to PF01514, Secretory protein of YscJ/FliF family, score 6.4e-32
471473004119	1 probable transmembrane helix predicted for CTL0822 by TMHMM2.0 at aa 236-258
471473004120	type III secretion system protein; Validated; Region: PRK06328
471473004121	Flagellar assembly protein FliH; Region: FliH; pfam02108
471473004122	type III secretion system protein; Reviewed; Region: PRK09617
471473004123	5 probable transmembrane helices predicted for CTL0825 by TMHMM2.0 at aa 7-29, 93-115, 135-157, 245-267 and 274-296
471473004124	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473004125	HMMPfam hit to PF00813, FliP family, score 1.9e-73
471473004126	PS01061 Flagella transport protein fliP family signature 2
471473004127	Type III secretory pathway, component EscS [Intracellular trafficking and secretion]; Region: EscS; COG4794
471473004128	HMMPfam hit to PF01313, Bacterial export proteins,family, score 5.2e-27
471473004129	2 probable transmembrane helices predicted for CTL0826 by TMHMM2.0 at aa 20-42 and 62-84
471473004130	Type III secretory pathway, component EscT [Intracellular trafficking and secretion]; Region: EscT; COG4791
471473004131	HMMPfam hit to PF01311, Bacterial export proteins,family, score 1e-14
471473004132	6 probable transmembrane helices predicted for CTL0827 by TMHMM2.0 at aa 26-48, 52-74, 87-109,145-167,203-225 and 240-262
471473004133	2 probable transmembrane helices predicted for CTL0828 by TMHMM2.0 at aa 50-72 and 113-135
471473004134	Protein of unknown function (DUF1494); Region: DUF1494; pfam07379
471473004135	HMMPfam hit to PF07379, Protein of unknown function (DUF1494), score 4.2e-134
471473004136	1 probable transmembrane helix predicted for CTL0830 by TMHMM2.0 at aa 12-34
471473004137	1 probable transmembrane helix predicted for CTL0831 by TMHMM2.0 at aa 20-42
471473004138	Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulG; COG2165
471473004139	Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulF; COG1459
471473004140	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
471473004141	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
471473004142	3 probable transmembrane helices predicted for CTL0833 by TMHMM2.0 at aa 160-182, 207-229 and 364-386
471473004143	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 7.6e-18
471473004144	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 1.8e-21
471473004145	Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulE; COG2804
471473004146	Type II secretion system (T2SS), protein E, N-terminal domain; Region: T2SE_Nter; pfam05157
471473004147	PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129
471473004148	Walker A motif; other site
471473004149	ATP binding site [chemical binding]; other site
471473004150	Walker B motif; other site
471473004151	HMMPfam hit to PF00437, Type II/IV secretion system protein, score 4.9e-116
471473004152	PS00662 Bacterial type II secretion system protein E signature
471473004153	PS00017 ATP/GTP-binding site motif A (P-loop)
471473004154	Type II secretory pathway, component PulD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulD; COG1450
471473004155	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
471473004156	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
471473004157	HMMPfam hit to PF00263, Bacterial type II and III secretion system, score 6.6e-58
471473004158	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 2.2e-09
471473004159	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 4.8e-10
471473004160	1 probable transmembrane helix predicted for CTL0835 by TMHMM2.0 at aa 5-27
471473004161	Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006
471473004162	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
471473004163	Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline; Region: APP-like; cd01092
471473004164	active site
471473004165	HMMPfam hit to PF00557, metallopeptidase family M24,score 4.6e-63
471473004166	DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]; Region: MutL; COG0323
471473004167	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
471473004168	ATP binding site [chemical binding]; other site
471473004169	Mg2+ binding site [ion binding]; other site
471473004170	G-X-G motif; other site
471473004171	MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is...; Region: MutL_Trans; cd00782
471473004172	ATP binding site [chemical binding]; other site
471473004173	MutL C terminal dimerisation domain; Region: MutL_C; pfam08676
471473004174	HMMPfam hit to PF01119, DNA mismatch repair protein,C-termina, score 4.5e-47
471473004175	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and, score 9.9e-07
471473004176	PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature
471473004177	type III secretion low calcium response chaperone LcrH/SycD; Region: LcrH_SycD; TIGR02552
471473004178	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
471473004179	binding surface
471473004180	TPR motif; other site
471473004181	HMMPfam hit to PF07720, Tetratricopeptide repeat,score 4.7e-08
471473004182	HMMPfam hit to PF07720, Tetratricopeptide repeat,score 2
471473004183	pathogenicity island 2 effector protein SseC; Provisional; Region: PRK15362
471473004184	1 probable transmembrane helix predicted for CTL0841 by TMHMM2.0 at aa 256-278
471473004185	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
471473004186	EamA-like transporter family; Region: EamA; pfam00892
471473004187	EamA-like transporter family; Region: EamA; pfam00892
471473004188	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 5.8e-19
471473004189	10 probable transmembrane helices predicted for CTL0843 by TMHMM2.0 at aa 13-35, 50-72, 85-107,117-134,143-162, 172-194, 207-229, 239-261, 268-290 and 295-314
471473004190	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 9.3e-25
471473004191	threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK00413
471473004192	The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information...; Region: TGS; cd01616
471473004193	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
471473004194	Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771
471473004195	active site
471473004196	dimer interface [polypeptide binding]; other site
471473004197	motif 1; other site
471473004198	motif 2; other site
471473004199	motif 3; other site
471473004200	ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: ThrRS_anticodon; cd00860
471473004201	anticodon binding site; other site
471473004202	HMMPfam hit to PF02824, TGS domain, score 1.8e-15
471473004203	HMMPfam hit to PF07973, Threonyl and Alanyl tRNA synthetase se, score 2.3e-21
471473004204	HMMPfam hit to PF00587, tRNA synthetase class II core domain (, score 3.2e-65
471473004205	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
471473004206	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
471473004207	HMMPfam hit to PF03129, Anticodon binding domain,score 9.3e-29
471473004208	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
471473004209	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
471473004210	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 5.7e-37
471473004211	Uncharacterized protein family (UPF0137); Region: UPF0137; pfam03677
471473004212	HMMPfam hit to PF03677, Uncharacterised protein family (UPF0137), score 1.2e-155
471473004213	tryptophanyl-tRNA synthetase II; Reviewed; Region: PRK12282
471473004214	catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806
471473004215	active site
471473004216	HIGH motif; other site
471473004217	dimer interface [polypeptide binding]; other site
471473004218	KMSKS motif; other site
471473004219	HMMPfam hit to PF00579, tRNA synthetases class I (W and Y), score 2.1e-109
471473004220	excinuclease ABC subunit B; Provisional; Region: PRK05298
471473004221	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
471473004222	ATP binding site [chemical binding]; other site
471473004223	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
471473004224	nucleotide binding region [chemical binding]; other site
471473004225	ATP-binding site [chemical binding]; other site
471473004226	Ultra-violet resistance protein B; Region: UvrB; pfam12344
471473004227	HMMPfam hit to PF04851, Type III restriction enzyme,res subunit, score 9.1e-06
471473004228	PS00017 ATP/GTP-binding site motif A (P-loop)
471473004229	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 2e-19
471473004230	HMMPfam hit to PF02151, UvrB/uvrC motif, score 1.9e-06
471473004231	enolase; Provisional; Region: eno; PRK00077
471473004232	Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313
471473004233	dimer interface [polypeptide binding]; other site
471473004234	metal binding site [ion binding]; metal-binding site
471473004235	substrate binding pocket [chemical binding]; other site
471473004236	HMMPfam hit to PF03952, Enolase, N-terminal domain,score 2e-56
471473004237	HMMPfam hit to PF00113, Enolase, C-terminal TIM barrel domain, score 8.2e-146
471473004238	PS00164 Enolase signature
471473004239	Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]; Region: RsbU; COG2208
471473004240	HAMP domain; Region: HAMP; pfam00672
471473004241	Stage II sporulation protein E (SpoIIE); Region: SpoIIE; pfam07228
471473004242	2 probable transmembrane helices predicted for CTL0851 by TMHMM2.0 at aa 20-42 and 316-335
471473004243	HMMPfam hit to PF00672, HAMP domain, score 4.2e-09
471473004244	HMMPfam hit to PF07228, Stage II sporulation protein E (SpoIIE), score 9e-61
471473004245	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cl01054
471473004246	Sigma factor PP2C-like phosphatases; Region: PP2C_SIG; smart00331
471473004247	1 probable transmembrane helix predicted for CTL0852 by TMHMM2.0 at aa 9-31
471473004248	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_3; pfam13085
471473004249	4Fe-4S dicluster domain; Region: Fer4_8; pfam13183
471473004250	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.0064
471473004251	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
471473004252	succinate dehydrogenase flavoprotein subunit; Reviewed; Region: sdhA; PRK08641
471473004253	L-aspartate oxidase; Provisional; Region: PRK06175
471473004254	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
471473004255	HMMPfam hit to PF02910, Fumarate reductase/succinate dehydroge, score 2.4e-47
471473004256	HMMPfam hit to PF00890, FAD binding domain, score 3.8e-85
471473004257	PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site
471473004258	this CDS carries multiple frameshfift mutations. The sequence has been checked and is believed to be correct
471473004259	5 probable transmembrane helices predicted for CTL0856 by TMHMM2.0 at aa 19-41, 65-87, 115-137, 220-242 and 262-284
471473004260	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
471473004261	Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]; Region: COG1099
471473004262	active site
471473004263	HMMPfam hit to PF04909, Amidohydrolase, score 0.0016
471473004264	HMMPfam hit to PF01026, TatD related DNase, score 6.6e-106
471473004265	PS01091 Uncharacterized protein family UPF0006 signature 3
471473004266	PS01090 Uncharacterized protein family UPF0006 signature 2
471473004267	Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]; Region: COG4233
471473004268	Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]; Region: CcdA; COG0785
471473004269	Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl15788
471473004270	DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD...; Region: DsbDgamma; cd02953
471473004271	DsbD alpha interface [polypeptide binding]; other site
471473004272	catalytic residues [active]
471473004273	PS00194 Thioredoxin family active site
471473004274	8 probable transmembrane helices predicted for CTL0859 by TMHMM2.0 at aa 287-309, 330-352,367-389,416-438, 453-472, 493-510, 514-536 and 549-571
471473004275	HMMPfam hit to PF02683, Cytochrome C biogenesis protein transmembran, score 5.2e-05
471473004276	Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811
471473004277	3 probable transmembrane helices predicted for CTL0860 by TMHMM2.0 at aa 22-39, 141-163 and 178-200
471473004278	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 2e-51
471473004279	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
471473004280	Biopolymer transport protein ExbD/TolR; Region: ExbD; pfam02472
471473004281	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 0.00021
471473004282	1 probable transmembrane helix predicted for CTL0861 by TMHMM2.0 at aa 15-37
471473004283	1 probable transmembrane helix predicted for CTL0861A by TMHMM2.0 at aa 7-29
471473004284	translocation protein TolB; Provisional; Region: tolB; PRK01029
471473004285	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
471473004286	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
471473004287	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
471473004288	HMMPfam hit to PF04052, TolB amino-terminal domain,score 1.5e-54
471473004289	HMMPfam hit to PF07676, WD40-like Beta Propeller Repeat, score 9.7e-05
471473004290	HMMPfam hit to PF07676, WD40-like Beta Propeller Repeat, score 2.4e-08
471473004291	HMMPfam hit to PF07676, WD40-like Beta Propeller Repeat, score 2.6e-05
471473004292	HMMPfam hit to PF07676, WD40-like Beta Propeller Repeat, score 0.28
471473004293	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
471473004294	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
471473004295	ligand binding site [chemical binding]; other site
471473004296	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
471473004297	HMMPfam hit to PF00691, OmpA family, score 2.7e-26
471473004298	FOG: LysM repeat [Cell envelope biogenesis, outer membrane]; Region: LytE; COG1388
471473004299	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
471473004300	HMMPfam hit to PF01476, LysM domain, score 6.1e-17
471473004301	Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]; Region: AhpC; COG0450
471473004302	Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides; Region: PRX_Typ2cys; cd03015
471473004303	dimer interface [polypeptide binding]; other site
471473004304	decamer (pentamer of dimers) interface [polypeptide binding]; other site
471473004305	catalytic triad [active]
471473004306	peroxidatic and resolving cysteines [active]
471473004307	HMMPfam hit to PF00578, AhpC/TSA family, score 2.3e-87
471473004308	HMMPfam hit to PF08534, Redoxin, score 3.5e-10
471473004309	Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]; Region: GroL; COG0459
471473004310	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
471473004311	HMMPfam hit to PF00118, TCP-1/cpn60 chaperonin family, score 7.9e-131
471473004312	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3876
471473004313	HMMPfam hit to PF07075, Protein of unknown function (DUF1343), score 2.4e-231
471473004314	1 probable transmembrane helix predicted for CTL0868 by TMHMM2.0 at aa 7-26
471473004315	NTPase/HAM1.  This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A...; Region: HAM1; cd00515
471473004316	active site
471473004317	dimerization interface [polypeptide binding]; other site
471473004318	HMMPfam hit to PF01725, Ham1 family, score 3.9e-43
471473004319	Family 1 of Uracil-DNA glycosylase (UDG) enzymes; Region: UDG_F1; cd10027
471473004320	ligand binding site [chemical binding]; other site
471473004321	active site
471473004322	UGI interface [polypeptide binding]; other site
471473004323	catalytic site [active]
471473004324	HMMPfam hit to PF03167, Uracil DNA glycosylase superfamily, score 8e-76
471473004325	PS00130 Uracil-DNA glycosylase signature
471473004326	Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]; Region: UvrD; COG0210
471473004327	Part of AAA domain; Region: AAA_19; pfam13245
471473004328	Family description; Region: UvrD_C_2; pfam13538
471473004329	HMMPfam hit to PF00580, UvrD/REP helicase, score 6.3e-222
471473004330	PS00017 ATP/GTP-binding site motif A (P-loop)
471473004331	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]; Region: RpoN; COG1508
471473004332	Sigma-54 factor, Activator interacting domain (AID); Region: Sigma54_AID; pfam00309
471473004333	Sigma-54 factor, core binding domain; Region: Sigma54_CBD; pfam04963
471473004334	Sigma-54, DNA binding domain; Region: Sigma54_DBD; pfam04552
471473004335	HMMPfam hit to PF00309, Sigma-54 factor, Activator interacting do, score 1e-17
471473004336	HMMPfam hit to PF04963, Sigma-54 factor, core binding domain, score 4.9e-08
471473004337	HMMPfam hit to PF04552, Sigma-54, DNA binding domain, score 3.9e-77
471473004338	PS00718 Sigma-54 factors family signature 2
471473004339	Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]; Region: COG5424
471473004340	HMMPfam hit to PF03070, TENA/THI-4/PQQC family,score 5.9e-76
471473004341	GTP and metal dependent enzyme involved F420 coenzyme biosynthesis (catalyzes addition of two l-glutamates to F420 precursor) [Coenzyme transport and metabolism]; Region: COG1478
471473004342	F420-0:Gamma-glutamyl ligase; Region: F420_ligase; cl00644
471473004343	Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5; Region: DHFR; cd00209
471473004344	Dihydrofolate reductase [Coenzyme metabolism]; Region: FolA; COG0262
471473004345	folate binding site [chemical binding]; other site
471473004346	NADP+ binding site [chemical binding]; other site
471473004347	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483
471473004348	catalytic center binding site [active]
471473004349	ATP binding site [chemical binding]; other site
471473004350	DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and...; Region: DHPS; cd00739
471473004351	dihydropteroate synthase; Region: DHPS; TIGR01496
471473004352	substrate binding pocket [chemical binding]; other site
471473004353	dimer interface [polypeptide binding]; other site
471473004354	inhibitor binding site; inhibition site
471473004355	PS00017 ATP/GTP-binding site motif A (P-loop)
471473004356	PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature
471473004357	Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and...; Region: DHNA_DHNTPE; cd00534
471473004358	homooctamer interface [polypeptide binding]; other site
471473004359	active site
471473004360	HMMPfam hit to PF02152, Dihydroneopterin aldolase,score 4e-47
471473004361	RNA polymerase sigma factor RpoD; Validated; Region: PRK05658
471473004362	Sigma-70 factor, region 1.1; Region: Sigma70_r1_1; pfam03979
471473004363	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
471473004364	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
471473004365	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
471473004366	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
471473004367	DNA binding residues [nucleotide binding]
471473004368	HMMPfam hit to PF04545, Sigma-70, region, score 1.1e-23
471473004369	PS00716 Sigma-70 factors family signature 2
471473004370	HMMPfam hit to PF04539, Sigma-70 region, score 4.2e-36
471473004371	HMMPfam hit to PF04542, Sigma-70 region, score 2.4e-28
471473004372	PS00715 Sigma-70 factors family signature 1
471473004373	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature
471473004374	HMMPfam hit to PF00140, Sigma-70 factor,region,score 2.2e-18
471473004375	HMMPfam hit to PF03979, Sigma-70 factor,region,score 3.8e-24
471473004376	Uncharacterized protein family (UPF0242); Region: UPF0242; pfam06785
471473004377	HMMPfam hit to PF06785, Uncharacterised protein family (UPF0242), score 0
471473004378	2 probable transmembrane helices predicted for CTL0880 by TMHMM2.0 at aa 34-56 and 61-83
471473004379	30S ribosomal protein S20; Reviewed; Region: rpsT; PRK00239
471473004380	HMMPfam hit to PF01649, Ribosomal protein S20,score 1.3e-15
471473004381	2 probable transmembrane helices predicted for CTL0882 by TMHMM2.0 at aa 213-235 and 240-262
471473004382	Effector from type III secretion system; Region: Effector_1; pfam04518
471473004383	HMMPfam hit to PF04518, Protein of unknown function,DUF582, score 1.5e-179
471473004384	Effector from type III secretion system; Region: Effector_1; pfam04518
471473004385	HMMPfam hit to PF04518, Protein of unknown function,DUF582, score 1.2e-207
471473004386	Effector from type III secretion system; Region: Effector_1; pfam04518
471473004387	HMMPfam hit to PF04518, Protein of unknown function,DUF582, score 5e-209
471473004388	PS00962 Ribosomal protein S2 signature 1
471473004389	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
471473004390	Exodeoxyribonuclease V, gamma subunit; Region: Exonuc_V_gamma; pfam04257
471473004391	MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_MurJ_like; cd13123
471473004392	MviN-like protein; Region: MVIN; pfam03023
471473004393	13 probable transmembrane helices predicted for CTL0888 by TMHMM2.0 at aa 20-42, 86-108, 118-140,147-166,176-198, 221-243, 258-280, 300-322, 342-364,371-393,398-420, 441-463 and 478-500
471473004394	HMMPfam hit to PF03023, MviN-like protein, score 1.3e-187
471473004395	endonuclease IV; Provisional; Region: PRK01060
471473004396	AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of...; Region: AP2Ec; cd00019
471473004397	AP (apurinic/apyrimidinic) site pocket; other site
471473004398	DNA interaction; other site
471473004399	Metal-binding active site; metal-binding site
471473004400	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 8.2e-51
471473004401	PS00730 AP endonucleases family 2 signature 2
471473004402	Ribosomal protein S4/S9 N-terminal domain; Region: Ribosomal_S4; pfam00163
471473004403	ribosomal protein S4, bacterial/organelle type; Region: rpsD_bact; TIGR01017
471473004404	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
471473004405	RNA binding surface [nucleotide binding]; other site
471473004406	HMMPfam hit to PF01479, S4 domain, score 2.2e-20
471473004407	HMMPfam hit to PF00163, Ribosomal protein S4/S9 N-terminal domai, score 1.2e-16
471473004408	putative rhodanese-related sulfurtransferase; Provisional; Region: PRK00142
471473004409	Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins; Region: RHOD_YceA; cd01518
471473004410	active site residue [active]
471473004411	HMMPfam hit to PF00581, Rhodanese-like domain,score 1.6e-11
471473004412	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
471473004413	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
471473004414	substrate binding pocket [chemical binding]; other site
471473004415	chain length determination region; other site
471473004416	substrate-Mg2+ binding site; other site
471473004417	catalytic residues [active]
471473004418	aspartate-rich region 1; other site
471473004419	active site lid residues [active]
471473004420	aspartate-rich region 2; other site
471473004421	HMMPfam hit to PF00348, Polyprenyl synthetase,score 3.2e-29
471473004422	PS00444 Polyprenyl synthetases signature 2
471473004423	PS00723 Polyprenyl synthetases signature 1
471473004424	Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that...; Region: LbH_G1P_TT_C_like; cd05636
471473004425	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 1.2
471473004426	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 58
471473004427	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 4.2
471473004428	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 3
471473004429	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
471473004430	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
471473004431	DNA binding site [nucleotide binding]
471473004432	HMMPfam hit to PF00486, Transcriptional regulatory protein, C ter, score 2.6e-20
471473004433	Predicted alternative thymidylate synthase [Nucleotide transport and metabolism]; Region: THY1; COG1351
471473004434	Thymidylate synthase complementing protein; Region: Thy1; cl03630