-- dump date 20140619_001428 -- class Genbank::CDS -- table cds_note -- id note YP_001830894.1 KEGG: gdi:GDI2531 hypothetical protein YP_001830895.1 PFAM: glycosyl transferase family 9; KEGG: ppd:Ppro_2100 glycosyl transferase, family 9 YP_001830896.1 KEGG: rxy:Rxyl_0561 polysaccharide biosynthesis protein YP_001830897.1 PFAM: glycosyl transferase group 1; KEGG: mva:Mvan_1684 glycosyl transferase, group 1 YP_001830899.1 PFAM: acyltransferase 3; KEGG: rle:RL0234 exopolysaccharide production protein ExoZ YP_001830900.1 TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; KEGG: bra:BRADO7056 putative exopolysaccharide biosynthesis protein YP_001830901.1 KEGG: rle:RL3831 putative O-acetyl transferase YP_001830902.1 PFAM: Heparinase II/III family protein; KEGG: mva:Mvan_1686 heparinase II/III family protein YP_001830903.1 KEGG: bja:blr6296 probable GDP-mannose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_001830904.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ret:RHE_PA00180 plasmid partitioning protein RepAa1 YP_001830905.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: ret:RHE_PA00181 plasmid partitioning protein RepBa1 YP_001830906.1 KEGG: gox:GOX2551 hypothetical protein YP_001830907.1 KEGG: rpa:pRPA1 replication protein YP_001830908.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: azc:AZC_3075 acetyl-CoA carboxylase YP_001830909.1 PFAM: secretion protein HlyD family protein; KEGG: rpe:RPE_3322 secretion protein HlyD family protein YP_001830910.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_3321 ABC transporter related YP_001830911.1 PFAM: protein of unknown function DUF214; KEGG: rpe:RPE_3320 protein of unknown function DUF214 YP_001830912.1 PFAM: glycosyl transferase group 1; KEGG: mta:Moth_1853 glycosyl transferase, group 1 YP_001830913.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sus:Acid_1973 beta-ketoacyl synthase YP_001830914.1 PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: cph:Cpha266_1099 3-oxoacyl-(acyl-carrier-protein (ACP)) synthase III C-terminal domain protein YP_001830915.1 PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: cph:Cpha266_1099 3-oxoacyl-(acyl-carrier-protein (ACP)) synthase III C-terminal domain protein YP_001830916.1 PFAM: short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase NPD; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: sus:Acid_1972 beta-ketoacyl synthase YP_001830920.1 PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1351 steroid monooxygenase YP_001830921.1 PFAM: beta-lactamase; KEGG: dsh:Dshi_2284 beta-lactamase YP_001830922.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: xau:Xaut_1337 GAF modulated sigma54 specific transcriptional regulator, fis family YP_001830923.1 PFAM: regulatory protein TetR; KEGG: pla:Plav_0612 transcriptional regulator, TetR family YP_001830924.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: osa:4324493 Os01g0151700 YP_001830926.1 KEGG: bvi:Bcep1808_6395 hypothetical protein YP_001830927.1 KEGG: rsq:Rsph17025_2588 Ig family protein YP_001830928.1 PFAM: acyltransferase 3; KEGG: cak:Caul_3692 acyltransferase 3 YP_001830929.1 KEGG: shn:Shewana3_1383 hypothetical protein YP_001830931.1 PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1473 hypothetical protein YP_001830973.1 KEGG: gox:GOX2635 hypothetical protein YP_001830974.1 KEGG: gox:GOX2636 DotC YP_001830975.1 PFAM: type II secretion system protein E; KEGG: gox:GOX2639 twitching motility protein PilT YP_001830976.1 KEGG: gox:GOX2640 IcmT YP_001830978.1 PFAM: Lytic transglycosylase catalytic; KEGG: bvi:Bcep1808_7655 lytic transglycosylase, catalytic YP_001830979.1 KEGG: gox:GOX2637 hypothetical protein YP_001830981.1 KEGG: oan:Oant_1559 hypothetical protein YP_001830982.1 KEGG: gox:GOX2641 DotL YP_001830983.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: bam:Bamb_4837 prevent-host-death family protein YP_001830984.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: bam:Bamb_4836 addiction module toxin, RelE/StbE family YP_001830986.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cak:Caul_2656 transcriptional regulator, LysR family YP_001830987.1 KEGG: xau:Xaut_1169 4-oxalocrotonate tautomerase YP_001830988.1 PFAM: TrwC relaxase; SMART: AAA ATPase; KEGG: gox:GOX2642 conjugal transfer protein TraA YP_001830991.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Hemolysin-type calcium-binding region; Proprotein convertase P; Haemolysin-type calcium binding domain protein; KEGG: pol:Bpro_4929 hemolysin-type calcium-binding region YP_001830992.1 KEGG: smd:Smed_0884 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase YP_001830993.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: smd:Smed_0883 type I secretion membrane fusion protein, HlyD family YP_001830994.1 PFAM: BRO domain protein; KEGG: ecv:APECO1_4056 putative anti-repressor protein YP_001830995.1 KEGG: acr:Acry_3544 hypothetical protein YP_001830996.1 KEGG: gox:GOX2663 hypothetical protein YP_001830997.1 KEGG: acr:Acry_3545 hypothetical protein YP_001830999.1 KEGG: bxe:Bxe_B1040 hypothetical protein YP_001831001.1 KEGG: gox:GOX2604 hypothetical protein YP_001831003.1 PFAM: Rv0623 family protein transcription factor; KEGG: bbt:BBta_p0292 hypothetical protein YP_001831004.1 PFAM: PilT protein domain protein; KEGG: bbt:BBta_p0291 hypothetical protein YP_001831005.1 KEGG: nha:Nham_2476 hypothetical protein YP_001831007.1 PFAM: protein of unknown function DUF736; KEGG: xau:Xaut_4988 protein of unknown function DUF736 YP_001831008.1 KEGG: hsa:645586 hypothetical LOC645586 YP_001831011.1 PFAM: protein of unknown function DUF736; KEGG: xau:Xaut_4988 protein of unknown function DUF736 YP_001831013.1 PFAM: protein of unknown function DUF820; KEGG: tth:TTC0860 hypothetical protein YP_001831016.1 KEGG: rle:pRL80110 hypothetical protein YP_001831018.1 KEGG: sal:Sala_2655 hypothetical protein YP_001831022.1 KEGG: bbt:BBta_7714 hypothetical protein YP_001831025.1 ParB family YP_001831026.1 KEGG: gox:GOX2530 hypothetical protein YP_001831027.1 PFAM: helicase domain protein; KEGG: gox:GOX2542 DNA methylase YP_001831032.1 KEGG: dol:Dole_3186 CO dehydrogenase/acetyl-CoA synthase delta subunit YP_001831038.1 KEGG: nha:Nham_2399 hypothetical protein YP_001831040.1 PFAM: UvrD/REP helicase; KEGG: gox:GOX2523 DNA helicase II UvrD YP_001831042.1 KEGG: gox:GOX2525 hypothetical protein YP_001831043.1 KEGG: rno:684340 hypothetical protein YP_001831044.1 KEGG: nar:Saro_3916 WGR domain protein YP_001831045.1 PFAM: peptidase S24 and S26 domain protein; KEGG: mex:Mext_0361 peptidase S24 and S26 domain protein YP_001831046.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: mex:Mext_3517 DNA-directed DNA polymerase YP_001831048.1 KEGG: pla:Plav_0032 cobyrinic acid ac-diamide synthase YP_001831049.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: xau:Xaut_4999 addiction module antitoxin, RelB/DinJ family YP_001831050.1 PFAM: plasmid stabilization system; KEGG: ajs:Ajs_2238 addiction module toxin, RelE/StbE family YP_001831052.1 KEGG: mlo:mlr6204 hypothetical protein YP_001831053.1 KEGG: mlo:mlr6203 hypothetical protein YP_001831054.1 KEGG: nha:Nham_1149 hypothetical protein YP_001831055.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: fjo:Fjoh_3576 DEAD/DEAH box helicase domain protein YP_001831057.1 KEGG: ajs:Ajs_2631 hypothetical protein YP_001831058.1 KEGG: ajs:Ajs_2630 hypothetical protein YP_001831059.1 KEGG: rfr:Rfer_1064 hypothetical protein YP_001831060.1 PFAM: Domain of unknown function DUF1863; KEGG: ajs:Ajs_2628 hypothetical protein YP_001831061.1 KEGG: sdn:Sden_3578 hypothetical protein YP_001831062.1 KEGG: pca:Pcar_2915 hypothetical protein YP_001831063.1 PFAM: integrase family protein; KEGG: sme:SMa2257 possible integrase-like protein YP_001831064.1 PFAM: PilT protein domain protein; KEGG: smd:Smed_6500 PilT protein domain protein YP_001831065.1 TIGRFAM: prevent-host-death family protein; KEGG: rpa:RPA1834 hypothetical protein YP_001831067.1 PFAM: protein of unknown function DUF1612; KEGG: nha:Nham_4505 protein of unknown function DUF1612 YP_001831068.1 KEGG: gbe:GbCGDNIH1_1414 hypothetical secreted protein YP_001831069.1 KEGG: rle:RL3601 hypothetical protein YP_001831070.1 PFAM: fatty acid hydroxylase; KEGG: rle:RL3600 putative transmembrane fatty acid synthesis protein YP_001831071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_3219 two-component response transcriptional regulator (OmpR family) YP_001831072.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: bbt:BBta_3220 putative two-component sensor histidine kinase YP_001831074.1 KEGG: rpc:RPC_3230 hypothetical protein YP_001831075.1 KEGG: gbe:GbCGDNIH1_1860 hypothetical secreted protein YP_001831076.1 PFAM: chromosome segregation and condensation protein ScpB; KEGG: nha:Nham_4583 putative transcriptional regulator YP_001831080.1 PFAM: extracellular solute-binding protein family 1; KEGG: rle:RL4218 putative mannitol-binding component of ABC transporter YP_001831081.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4217 putative mannitol transmembrane permease component of ABC transporter YP_001831082.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4216 putative mannitol transmembrane permease component of ABC transporter YP_001831083.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: atc:AGR_L_3278 ATP-binding transport protein SmoK (POLK) YP_001831084.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: atc:AGR_L_830 mannitol 2-dehydrogenase (MDH) YP_001831085.1 KEGG: gox:GOX2097 sorbitol dehydrogenase small subunit YP_001831086.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: zmo:ZMO1285 solbitol dehydrogenase large subunit YP_001831087.1 PFAM: cytochrome c class I; KEGG: gox:GOX2094 sorbitol dehydrogenase cytochrome c subunit YP_001831088.1 KEGG: rle:pRL70138 putative insertion sequence transposase-like protein YP_001831090.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_001831091.1 KEGG: atc:AGR_L_812 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_001831092.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bja:bll5785 xylulokinase YP_001831093.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mlr4907 transcriptional regulator (AraC/XylS family) YP_001831095.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mlo:mlr4915 xylitol (sorbitol) dehydrogenase YP_001831096.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bvi:Bcep1808_1506 periplasmic binding protein/LacI transcriptional regulator YP_001831098.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: smd:Smed_5451 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001831100.1 PFAM: heat shock protein Hsp20; KEGG: mlo:mll9627 small heat shock protein YP_001831101.1 KEGG: nha:Nham_4549 hypothetical protein YP_001831102.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: nar:Saro_0180 hemerythrin HHE cation binding region protein YP_001831103.1 PFAM: transglutaminase domain protein; KEGG: rle:RL1406 putative transglutaminase family protein YP_001831104.1 PFAM: isochorismatase hydrolase; KEGG: mex:Mext_0062 isochorismatase hydrolase YP_001831105.1 KEGG: bja:bll5207 hypothetical protein YP_001831106.1 PFAM: protein of unknown function DUF892; KEGG: rpe:RPE_1822 protein of unknown function DUF892 YP_001831107.1 KEGG: gox:GOX2729 transposase YP_001831108.1 PFAM: protein of unknown function DUF892; KEGG: smd:Smed_4046 protein of unknown function DUF892 YP_001831109.1 KEGG: acr:Acry_3597 transposase and inactivated derivatives-like protein YP_001831110.1 KEGG: bra:BRADO3437 hypothetical protein YP_001831111.1 Catalyzes the transfer of electrons from NADH to quinone YP_001831112.1 KEGG: sme:SMb20515 putative chemotaxis methyltransferase protein; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001831113.1 PFAM: CheB methylesterase; KEGG: smd:Smed_5775 CheB methylesterase YP_001831114.1 KEGG: rpe:RPE_1591 hypothetical protein YP_001831115.1 PFAM: protein of unknown function DUF1348; KEGG: rle:RL1427 hypothetical protein YP_001831116.1 KEGG: hch:HCH_04879 hypothetical protein YP_001831117.1 PFAM: helix-turn-helix domain protein; KEGG: smd:Smed_1854 putative phage repressor YP_001831118.1 PFAM: regulatory protein TetR; KEGG: nwi:Nwi_3052 transcriptional regulatory protein, TetR family YP_001831120.1 PFAM: replication protein C; KEGG: acr:Acry_3578 replication protein C YP_001831121.1 PFAM: nuclease (SNase domain protein); KEGG: mex:Mext_0065 nuclease (SNase domain protein) YP_001831123.1 KEGG: gox:GOX2606 hypothetical protein YP_001831125.1 KEGG: gox:GOX2608 hypothetical protein YP_001831127.1 KEGG: gox:GOX2610 hypothetical membrane protein YP_001831128.1 KEGG: gox:GOX2611 hypothetical protein YP_001831129.1 KEGG: gox:GOX2612 TraW YP_001831130.1 KEGG: gox:GOX2613 hypothetical protein YP_001831133.1 PFAM: helix-turn-helix domain protein; KEGG: rpa:RPA4787 anaerobic benzoate catabolism transcriptional regulator YP_001831135.1 KEGG: lpc:LPC_2894 IcmL (DotI) YP_001831136.1 KEGG: gox:GOX2617 DotH YP_001831137.1 KEGG: gox:GOX2618 DotG YP_001831138.1 KEGG: gox:GOX2619 hypothetical protein YP_001831141.1 KEGG: mbb:BCG_0318c PE-PGRS family protein YP_001831142.1 KEGG: gox:GOX2621 hypothetical protein YP_001831143.1 KEGG: gox:GOX2622 DotO YP_001831144.1 KEGG: eci:UTI89_P001 hypothetical protein YP_001831146.1 PFAM: histone family protein DNA-binding protein; KEGG: pla:Plav_0506 histone family protein DNA-binding protein YP_001831148.1 KEGG: psb:Psyr_1149 hypothetical protein YP_001831149.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001831151.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001831152.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_001831153.1 TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA domain I; KEGG: rpa:RPA1100 Holliday junction DNA helicase motor protein YP_001831154.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001831155.1 KEGG: nwi:Nwi_0471 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_001831156.1 KEGG: xau:Xaut_1159 uroporphyrinogen III synthase HEM4 YP_001831157.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr6190 ABC transporter ATP-binding protein YP_001831158.1 PFAM: ABC-2 type transporter; KEGG: bja:blr6191 ABC transporter permease protein YP_001831159.1 PFAM: cytochrome c class I; KEGG: nwi:Nwi_2582 cytochrome c, class I YP_001831160.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bbk:BARBAKC583_0805 thioredoxin family protein YP_001831161.1 KEGG: mex:Mext_2985 hypothetical protein YP_001831162.1 PFAM: phosphoesterase; KEGG: aba:Acid345_2127 phosphoesterase YP_001831163.1 KEGG: spe:Spro_0124 hypothetical protein YP_001831164.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bur:Bcep18194_C7472 aldehyde dehydrogenase YP_001831165.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_C7473 transcriptional regulator, TetR family YP_001831167.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: gme:Gmet_3140 DNA adenine methylase YP_001831168.1 KEGG: mex:Mext_2987 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein YP_001831169.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001831172.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mca:MCA1165 NAD-dependent epimerase/dehydratase family protein YP_001831173.1 PFAM: glycosyl transferase family 2; KEGG: ava:Ava_1119 glycosyl transferase, family 2 YP_001831174.1 KEGG: rle:RL0365 hypothetical protein YP_001831175.1 PFAM: regulatory protein TetR; KEGG: scl:sce2153 transcriptional regulator, TetR family YP_001831176.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: pla:Plav_1506 3-beta hydroxysteroid dehydrogenase/isomerase YP_001831177.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rme:Rmet_4288 short chain dehydrogenase YP_001831178.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RS03889 probable transcription regulator protein YP_001831179.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: nar:Saro_1849 NAD-dependent epimerase/dehydratase YP_001831180.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kra:Krad_2789 short-chain dehydrogenase/reductase SDR YP_001831181.1 PFAM: regulatory protein TetR; KEGG: kra:Krad_2790 transcriptional regulator, TetR family YP_001831182.1 PFAM: alpha/beta hydrolase fold; KEGG: gbe:GbCGDNIH1_1155 carboxylesterase YP_001831183.1 KEGG: gbe:GbCGDNIH1_1154 hypothetical secreted protein YP_001831184.1 KEGG: gbe:GbCGDNIH1_1153 hypothetical cytosolic protein YP_001831185.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_1114 short chain dehydrogenase YP_001831186.1 KEGG: rso:RS03893 putative signal peptide protein YP_001831187.1 KEGG: mes:Meso_0915 methyltransferase type 12 YP_001831188.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rme:Rmet_4288 short chain dehydrogenase YP_001831189.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cak:Caul_4341 aldehyde dehydrogenase_ YP_001831190.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RS03889 probable transcription regulator protein YP_001831191.1 KEGG: pla:Plav_0855 male sterility domain YP_001831193.1 KEGG: atc:AGR_C_1076 hypothetical protein YP_001831195.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_001831196.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rpe:RPE_1394 transcriptional regulator, XRE family YP_001831197.1 KEGG: sco:SCO3894 transmembrane protein YP_001831198.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: atc:AGR_L_2454 diaminopimelate decarboxylase YP_001831199.1 KEGG: mex:Mext_1537 hypothetical protein YP_001831200.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_2002 ErfK/YbiS/YcfS/YnhG family protein YP_001831201.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001831203.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_1149 transcriptional regulator YP_001831204.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mex:Mext_1092 thioredoxin reductase YP_001831205.1 PFAM: protein of unknown function DUF992; KEGG: azc:AZC_3134 hypothetical protein YP_001831206.1 PFAM: GtrA family protein; KEGG: azc:AZC_1144 hypothetical protein YP_001831207.1 KEGG: xau:Xaut_2953 hypothetical protein YP_001831208.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_001831209.1 PFAM: regulatory protein TetR; KEGG: bja:blr7984 transcriptional regulatory protein YP_001831210.1 PFAM: Glutathione S-transferase domain; KEGG: bja:bll7983 glutathione transferase YP_001831211.1 PFAM: thiamine biosynthesis protein ThiC; KEGG: acr:Acry_0965 thiamine biosynthesis protein ThiC YP_001831213.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: rme:Rmet_5902 ethanolamine ammonia lyase large subunit YP_001831214.1 PFAM: Ethanolamine ammonia-lyase light chain; KEGG: sma:SAV4545 ethanolamine ammonia-lyase small subunit YP_001831215.1 KEGG: mex:Mext_3988 hypothetical protein YP_001831216.1 PFAM: protein of unknown function DUF1052; KEGG: rpa:RPA0570 hypothetical protein YP_001831218.1 KEGG: mmr:Mmar10_2450 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; adenylylsulfate kinase; elongation factor Tu domain 2 protein YP_001831219.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001831220.1 KEGG: xau:Xaut_2720 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_001831221.1 TIGRFAM: outer membrane autotransporter barrel domain protein; KEGG: rpd:RPD_1013 outer membrane autotransporter barrel YP_001831222.1 PFAM: helicase domain protein; KEGG: mex:Mext_4394 helicase domain protein YP_001831223.1 KEGG: reu:Reut_B4493 hypothetical protein YP_001831224.1 PFAM: Na+/solute symporter; KEGG: bja:bll5890 monocarboxylic acid permease YP_001831225.1 KEGG: xau:Xaut_1175 hypothetical protein YP_001831227.1 PFAM: aminotransferase class I and II; KEGG: oan:Oant_1672 aminotransferase class I and II YP_001831228.1 PFAM: chemotaxis sensory transducer; KEGG: ccr:CC_0428 methyl-accepting chemotaxis protein McpB YP_001831229.1 PFAM: high-affinity nickel-transporter; KEGG: rpb:RPB_4543 high-affinity nickel-transporter YP_001831230.1 PFAM: protein of unknown function DUF1007; KEGG: azc:AZC_0694 hypothetical protein YP_001831231.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_001831232.1 PFAM: globin; KEGG: rpa:RPA3708 globin-like protein YP_001831233.1 TIGRFAM: ribosomal protein L36; KEGG: nwi:Nwi_0983 ribosomal protein L36 YP_001831234.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:bll7547 hypothetical protein YP_001831235.1 PFAM: glycosyltransferase sugar-binding region containing DXD motif; KEGG: acr:Acry_0387 glycosyltransferase sugar-binding region containing DXD motif YP_001831236.1 PFAM: glycosyl transferase family 2; KEGG: pmh:P9215_12991 hypothetical protein YP_001831237.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: reh:H16_B2164 NADH:flavin oxidoreductase YP_001831238.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: gdi:GDI3479 putative nucleoside-diphosphate-sugar epimerase dehydratase protein YP_001831239.1 KEGG: bcs:BCAN_A0104 hypothetical protein YP_001831240.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: xau:Xaut_2494 peptide methionine sulfoxide reductase YP_001831241.1 PFAM: protein of unknown function DUF1013; KEGG: azc:AZC_1470 hypothetical protein YP_001831243.1 PFAM: Intracellular septation protein A; KEGG: smd:Smed_3090 intracellular septation protein A YP_001831244.1 KEGG: mex:Mext_3975 conserved hypothetical protein; putative alpha/beta hydrolase domain YP_001831245.1 PFAM: aminotransferase class V; KEGG: bja:blr4338 cysteine desulfurase YP_001831246.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: azc:AZC_1044 FeS assembly SufB protein YP_001831247.1 KEGG: mex:Mext_3978 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase YP_001831248.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bra:BRADO3543 SufD, needed for FhuF Fe-S center production/stability YP_001831249.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: bra:BRADO5444 cysteine desulfurase YP_001831250.1 PFAM: protein of unknown function DUF59; KEGG: hne:HNE_2613 hypothetical protein YP_001831251.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azc:AZC_3609 HesB protein YP_001831252.1 KEGG: gdi:GDI0015 putative shikimate dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein YP_001831253.1 KEGG: gdi:GDI0016 putative sugar transporter protein; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1 YP_001831254.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mes:Meso_1773 DEAD/DEAH box helicase-like YP_001831255.1 PFAM: iron permease FTR1; KEGG: bra:BRADO0319 conserved hypothetical protein; putative high-affinity Fe2+/Pb2+ permease YP_001831256.1 PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: azc:AZC_3727 outer membrane protein Omp31 precursor YP_001831257.1 KEGG: gdi:GDI1498 putative chemoreceptor McpA; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001831258.1 KEGG: bja:blr2721 probable serine protease do-like precursor; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein YP_001831259.1 PFAM: cytochrome c prime; KEGG: rpe:RPE_3086 cytochrome c, class II YP_001831260.1 PFAM: cytochrome B561; KEGG: rpe:RPE_3087 cytochrome b561 YP_001831261.1 PFAM: glycosyl transferase group 1; KEGG: bja:bll8163 glycosyl transferase YP_001831262.1 PFAM: metallophosphoesterase; KEGG: xau:Xaut_4108 metallophosphoesterase YP_001831263.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: mex:Mext_4469 helix-turn-helix domain protein YP_001831264.1 PFAM: aminotransferase class-III; KEGG: swi:Swit_3034 aminotransferase class-III YP_001831265.1 KEGG: gdi:GDI0639 hypothetical protein YP_001831266.1 PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; KEGG: gdi:GDI1720 putative pyruvate dehydrogenase E2 component YP_001831267.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: gdi:GDI1721 putative pyruvate dehydrogenase E1 component subunit beta YP_001831268.1 PFAM: dehydrogenase E1 component; KEGG: gdi:GDI1722 putative pyruvate dehydrogenase E1 component subunit alpha YP_001831269.1 PFAM: acriflavin resistance protein; KEGG: gbe:GbCGDNIH1_0231 acriflavin resistance plasma membrane protein YP_001831270.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: gdi:GDI3850 secretion protein, HlyD-family YP_001831271.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: mca:MCA0176 outer membrane efflux protein YP_001831272.1 KEGG: rle:pRL110441 putative phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_001831273.1 KEGG: mex:Mext_4766 hypothetical protein YP_001831274.1 KEGG: mex:Mext_2959 hypothetical protein YP_001831275.1 KEGG: mex:Mext_2960 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_001831276.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: mex:Mext_2961 chaperone protein DnaJ YP_001831277.1 SMART: ribosomal RNA adenine methylase transferase; KEGG: azc:AZC_0161 phospholipid N-methyltransferase YP_001831278.1 KEGG: mex:Mext_1520 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_001831279.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001831280.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001831281.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: bra:BRADO4669 putative efflux transporter permease; putative fusaric acid resistance pump YP_001831282.1 PFAM: regulatory protein MarR; KEGG: bvi:Bcep1808_5466 transcriptional regulator, MarR family YP_001831283.1 PFAM: glycosyl transferase family 2; KEGG: ter:Tery_4588 glycosyl transferase, family 2 YP_001831284.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20 YP_001831285.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: ajs:Ajs_2889 phosphoenolpyruvate carboxylase YP_001831286.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ppg:PputGB1_4083 amino acid adenylation domain protein YP_001831287.1 PFAM: Ferritin Dps family protein; KEGG: gdi:GDI0826 ferritin-like protein YP_001831288.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mex:Mext_2752 peptidoglycan-binding domain 1 protein YP_001831289.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mex:Mext_2753 sigma-54 factor interaction domain-containing protein YP_001831292.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: noc:Noc_1156 peptidase S9, prolyl oligopeptidase active site region YP_001831293.1 KEGG: pth:PTH_0205 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_001831294.1 KEGG: rpe:RPE_1857 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_001831295.1 KEGG: bbt:BBta_1138 hypothetical protein YP_001831296.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rle:RL4317 putative cobalamin adenosultransferase YP_001831297.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mex:Mext_4075 acetylornithine and succinylornithine aminotransferase YP_001831298.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: mex:Mext_4076 ornithine carbamoyltransferase YP_001831299.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_001831300.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mex:Mext_0666 tRNA/rRNA methyltransferase (SpoU) YP_001831301.1 TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: xau:Xaut_2957 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_001831302.1 PFAM: Cytochrome b/b6 domain; KEGG: azc:AZC_3500 cytochrome b/c1 YP_001831303.1 PFAM: cytochrome c1; KEGG: rpd:RPD_1303 cytochrome c1 YP_001831304.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_001831305.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate YP_001831306.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001831307.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_2149 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_001831308.1 PFAM: metallophosphoesterase; KEGG: rpd:RPD_3627 metallophosphoesterase YP_001831309.1 KEGG: rpd:RPD_3628 hypothetical protein YP_001831311.1 PFAM: Patatin; KEGG: pnu:Pnuc_1086 patatin YP_001831312.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mex:Mext_4481 low molecular weight phosphotyrosine protein phosphatase YP_001831313.1 PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: mex:Mext_4482 aminoglycoside phosphotransferase YP_001831314.1 KEGG: mex:Mext_2003 cob(II)yrinic acid a,c-diamide reductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase YP_001831315.1 PFAM: MaoC domain protein dehydratase; KEGG: mex:Mext_2486 MaoC domain protein dehydratase YP_001831316.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001831317.1 KEGG: ppg:PputGB1_1966 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3 YP_001831318.1 KEGG: mex:Mext_3817 hypothetical protein YP_001831319.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: oan:Oant_1403 transcriptional regulator, LysR family YP_001831320.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sal:Sala_0308 iron-containing alcohol dehydrogenase YP_001831321.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: xau:Xaut_3248 methylmalonate-semialdehyde dehydrogenase YP_001831322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: scl:sce2728 permease of the major facilitator superfamily,putative sugar transporter YP_001831323.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bch:Bcen2424_2586 xylulokinase YP_001831324.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH00969 probable zinc ABC transporter, ATP-binding protein YP_001831325.1 PFAM: ABC-3 protein; KEGG: rle:RL1048 putative transmembrane component of ABC transporter YP_001831326.1 PFAM: periplasmic solute binding protein; KEGG: ret:RHE_CH00971 probable zinc ABC transporter, substrate-binding protein YP_001831327.1 KEGG: gdi:GDI0039 hypothetical protein YP_001831328.1 PFAM: sodium:dicarboxylate symporter; KEGG: xau:Xaut_1774 sodium:dicarboxylate symporter YP_001831329.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: azc:AZC_3013 two-component sensor histidine kinase protein YP_001831330.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: azc:AZC_3012 two component response regulator YP_001831331.1 PFAM: beta-lactamase domain protein; KEGG: bbt:BBta_5036 putative metallo-hydrolase/oxidoreductase YP_001831332.1 PFAM: regulatory protein TetR; KEGG: mlo:mlr5353 transcriptional regulator YP_001831336.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: bcs:BCAN_A0498 chloride channel protein ClcB-like protein YP_001831337.1 KEGG: pnu:Pnuc_0538 hypothetical protein YP_001831338.1 PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_B2121 outer membrane efflux protein YP_001831339.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: bxe:Bxe_B2120 conserved hypothetical membrane protein, putative efflux pump YP_001831340.1 with MdtO and MdtP is involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride YP_001831341.1 KEGG: bxe:Bxe_B2118 hypothetical protein YP_001831342.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: swi:Swit_2867 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YP_001831343.1 KEGG: gme:Gmet_2448 hypothetical protein YP_001831344.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: mex:Mext_0563 acetate kinase YP_001831345.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: bch:Bcen2424_4872 phosphate acetyltransferase YP_001831346.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001831347.1 KEGG: bbt:BBta_3001 hypothetical protein YP_001831348.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: gsu:GSU2813 cytochrome c551 peroxidase YP_001831350.1 KEGG: mex:Mext_4746 hypothetical protein YP_001831351.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; KEGG: rpe:RPE_2812 riboflavin synthase YP_001831352.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: rpa:RPA2729 transcription antitermination protein NusB YP_001831353.1 KEGG: mex:Mext_3160 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein YP_001831354.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001831355.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: nha:Nham_1059 glucose-1-phosphate thymidylyltransferase YP_001831356.1 KEGG: rru:Rru_A0792 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein YP_001831358.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: atc:AGR_C_543 cysteine synthase A YP_001831360.1 PFAM: PfkB domain protein; KEGG: nwi:Nwi_0218 PfkB YP_001831361.1 KEGG: bja:blr0495 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_001831362.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_001831363.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001831364.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001831365.1 KEGG: bbt:BBta_0406 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 alpha subunit YP_001831366.1 KEGG: azc:AZC_4128 H+-transporting two-sector ATPase delta (OSCP) subunit; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit YP_001831367.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: rpc:RPC_0286 DNA polymerase III subunit delta YP_001831368.1 KEGG: bja:bll6206 hypothetical protein YP_001831369.1 KEGG: mex:Mext_1588 hypothetical protein YP_001831370.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: rpd:RPD_0436 leucyl-tRNA synthetase YP_001831371.1 PFAM: alanine racemase domain protein; KEGG: bbt:BBta_0174 putative exported protein of unknown function YP_001831372.1 KEGG: jan:Jann_1817 hypothetical protein YP_001831373.1 KEGG: mex:Mext_1577 hypothetical protein YP_001831374.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azc:AZC_0090 response regulator receiver YP_001831375.1 PFAM: cyclic nucleotide-binding; KEGG: mex:Mext_1575 cyclic nucleotide-binding YP_001831378.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: nwi:Nwi_2038 TonB like protein YP_001831379.1 TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bme:BMEI0364 biopolymer transport ExbD protein YP_001831380.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: xau:Xaut_4273 TonB-system energizer ExbB type-1 YP_001831381.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: azc:AZC_3753 2OG-Fe(II) oxygenase superfamily YP_001831382.1 PFAM: PepSY-associated TM helix domain protein; KEGG: nha:Nham_0971 hypothetical protein YP_001831383.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpe:RPE_4578 TonB-dependent siderophore receptor YP_001831385.1 PFAM: CsbD family protein; KEGG: bra:BRADO1086 conserved hypothetical protein, hypothetical UPF0337 protein YP_001831386.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_001831387.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: bra:BRADO0217 phosphoribosyl-ATP pyrophosphatase YP_001831388.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: pla:Plav_1233 imidazoleglycerol phosphate synthase, cyclase subunit YP_001831389.1 PFAM: protein of unknown function DUF475; KEGG: nar:Saro_2044 protein of unknown function DUF475 YP_001831390.1 PFAM: Class I peptide chain release factor; KEGG: pla:Plav_0634 class I peptide chain release factor YP_001831391.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: mex:Mext_2551 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_001831392.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: azc:AZC_4500 imidazole glycerol phosphate synthase YP_001831393.1 KEGG: rpc:RPC_0305 hypothetical protein YP_001831394.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001831395.1 heat shock protein involved in degradation of misfolded proteins YP_001831396.1 heat shock protein involved in degradation of misfolded proteins YP_001831397.1 KEGG: mex:Mext_2857 hypothetical protein YP_001831398.1 KEGG: bbt:BBta_2002 hydrogenase expression/formation YP_001831399.1 TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; KEGG: oan:Oant_0023 recombination protein RecR YP_001831400.1 PFAM: conserved hypothetical protein; KEGG: xau:Xaut_2167 hypothetical protein YP_001831401.1 KEGG: azc:AZC_0142 ATPase; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_001831402.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: bxe:Bxe_A2188 putative phosphohydrolase, MutT/NUDIX YP_001831403.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: azc:AZC_3675 ExsB protein YP_001831404.1 KEGG: scl:sce5181 probable 3-carboxymuconate cyclase YP_001831405.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mag:amb4061 superfamily II DNA and RNA helicase YP_001831406.1 PFAM: ribosomal protein L31; KEGG: mex:Mext_2355 ribosomal protein L31 YP_001831407.1 PFAM: adenylosuccinate synthetase; KEGG: xau:Xaut_0037 adenylosuccinate synthase YP_001831408.1 PFAM: helix-turn-helix HxlR type; KEGG: bvi:Bcep1808_5860 transcriptional regulator, HxlR family YP_001831409.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: pst:PSPTO_0819 hypothetical protein YP_001831410.1 PFAM: extracellular solute-binding protein family 3; KEGG: nwi:Nwi_0150 extracellular solute-binding protein, family 3 YP_001831411.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: xau:Xaut_2375 uroporphyrin-III C-methyltransferase YP_001831412.1 KEGG: nwi:Nwi_0527 hypothetical protein YP_001831413.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: nwi:Nwi_3134 heavy metal translocating P-type ATPase YP_001831414.1 TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller; KEGG: bja:bll7152 translocation protein TolB YP_001831415.1 KEGG: bcs:BCAN_A1737 TolA protein YP_001831416.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mex:Mext_4762 biopolymer transport protein ExbD/TolR YP_001831417.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpa:RPA1117 TolQ protein, inner membrane protein, tolerance to group A colicins YP_001831418.1 PFAM: regulatory protein TetR; KEGG: bam:Bamb_6109 transcriptional regulator, TetR family YP_001831419.1 PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_6110 alpha/beta hydrolase fold YP_001831420.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: azc:AZC_0520 4-hydroxybenzoyl-CoA thioesterase YP_001831421.1 PFAM: TOBE domain protein; KEGG: rpa:RPA4719 molybdo-pterin binding protein YP_001831422.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: rpd:RPD_1188 ModD protein YP_001831423.1 PFAM: TOBE domain protein; KEGG: bra:BRADO1761 hypothetical protein; putative molybdenum ABC transporter (ATP-binding protein) (C-ter fragment) YP_001831424.1 PFAM: regulatory protein LysR; KEGG: bra:BRADO1762 putative transcriptional regulatory protein, LysR family; putative molybdenum transport regulator, ModE YP_001831425.1 KEGG: rpa:RPA4634 hypothetical protein YP_001831426.1 PFAM: dienelactone hydrolase; KEGG: bbt:BBta_7870 putative carboxymethylenebutenolidase YP_001831427.1 PFAM: fatty acid desaturase; KEGG: cme:CMP318C sphingolipid delta 4 desaturase protein DES-1 YP_001831428.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_1567 glycosyl transferase, family 2 YP_001831429.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bte:BTH_I1339 oxidoreductase, short-chain dehydrogenase/reductase family YP_001831430.1 PFAM: MaoC domain protein dehydratase; KEGG: bxe:Bxe_B2727 putative MaoC-like dehydratase YP_001831431.1 PFAM: manganese containing catalase; KEGG: ava:Ava_3821 manganese containing catalase YP_001831432.1 KEGG: mex:Mext_0168 hypothetical protein YP_001831434.1 KEGG: mex:Mext_4055 excinuclease ABC, B subunit; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; SMART: DEAD-like helicases YP_001831436.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: rpc:RPC_3396 filamentation induced by cAMP protein Fic YP_001831437.1 PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: mex:Mext_2080 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_001831438.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: mex:Mext_2081 outer membrane protein assembly complex, YaeT protein YP_001831439.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: xau:Xaut_4432 putative membrane-associated zinc metalloprotease YP_001831440.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001831441.1 PFAM: phosphatidate cytidylyltransferase; KEGG: azc:AZC_1698 phosphatidate cytidylyltransferase YP_001831442.1 KEGG: nha:Nham_1698 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001831443.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001831444.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: xau:Xaut_4437 uridylate kinase YP_001831445.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: gbe:GbCGDNIH1_0354 two component system histidine kinase YP_001831446.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rle:pRL110290 putative acetyltransferase YP_001831447.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: gbe:GbCGDNIH1_0355 two-component response regulator YP_001831448.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xau:Xaut_1786 TonB-dependent receptor YP_001831449.1 PFAM: Chorismate mutase; KEGG: xau:Xaut_0395 chorismate mutase YP_001831450.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001831451.1 PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: xau:Xaut_0393 arogenate dehydrogenase YP_001831452.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_pAT_270 hypothetical protein YP_001831453.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:blr8188 putative dehalogenase YP_001831454.1 PFAM: Ion transport 2 domain protein ; K channel inward rectifier conserved region 2 domain protein; KEGG: gdi:GDI2414 putative inward rectifier potassium channel YP_001831457.1 PFAM: outer membrane efflux protein; KEGG: xau:Xaut_4826 outer membrane efflux protein YP_001831458.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bmu:Bmul_6291 multicopper oxidase type 3 YP_001831459.1 KEGG: bbt:BBta_p0116 hypothetical protein YP_001831460.1 KEGG: gvi:glr3185 hypothetical protein YP_001831461.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001831462.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mex:Mext_1964 tetratricopeptide TPR_2 repeat protein YP_001831463.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: swi:Swit_2958 transcriptional regulator, BadM/Rrf2 family YP_001831464.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: swi:Swit_2959 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001831465.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swi:Swit_3223 hypothetical protein YP_001831467.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_3409 ErfK/YbiS/YcfS/YnhG family protein YP_001831468.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: mag:amb1606 glutaredoxin and related protein YP_001831469.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gdi:GDI2784 putative dehydrogenase YP_001831470.1 PFAM: regulatory protein TetR; KEGG: gdi:GDI2783 putative transcriptional regulator, TetR family YP_001831471.1 PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein YP_001831472.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dsy:DSY3421 hypothetical protein YP_001831474.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_0052 short-chain dehydrogenase/reductase SDR YP_001831475.1 PFAM: Beta-ketoacyl synthase; KEGG: xau:Xaut_0053 beta-ketoacyl synthase YP_001831476.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_001831477.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: bra:BRADO5022 conserved hypothetical protein; putative signal peptide YP_001831478.1 KEGG: mlo:mlr0116 integral membrane lipid kinase-like protein; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_001831480.1 PFAM: GrpE protein; KEGG: smd:Smed_0012 ribulose-phosphate 3-epimerase YP_001831481.1 KEGG: xau:Xaut_0977 putative transmembrane anti-sigma factor YP_001831482.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_0976 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001831483.1 PFAM: blue (type 1) copper domain protein; KEGG: xau:Xaut_0975 blue (type 1) copper domain protein YP_001831484.1 PFAM: metallophosphoesterase; KEGG: xau:Xaut_0974 metallophosphoesterase YP_001831486.1 KEGG: sme:SMc02491 hypothetical protein YP_001831487.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_0824 response regulator receiver YP_001831488.1 PFAM: protein of unknown function DUF28; KEGG: azc:AZC_0510 hypothetical protein YP_001831489.1 PFAM: Glutathione S-transferase domain; KEGG: bpt:Bpet2488 putative glutathione transferase YP_001831490.1 TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rpe:RPE_0818 RNA polymerase, sigma 32 subunit, RpoH YP_001831491.1 KEGG: xau:Xaut_1985 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001831492.1 responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA YP_001831493.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: xau:Xaut_0103 Rieske (2Fe-2S) domain protein YP_001831494.1 PFAM: glycosyl transferase family 2; KEGG: ava:Ava_1119 glycosyl transferase, family 2 YP_001831495.1 PFAM: glycosyl transferase family 2; KEGG: ava:Ava_1119 glycosyl transferase, family 2 YP_001831496.1 KEGG: sfu:Sfum_0865 radical SAM domain protein YP_001831497.1 PFAM: shikimate kinase; 3-dehydroquinate synthase; KEGG: mex:Mext_1641 shikimate kinase, 3-dehydroquinate synthase YP_001831498.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: xau:Xaut_3765 bacterioferritin YP_001831499.1 KEGG: mex:Mext_1764 hypothetical protein YP_001831500.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: mex:Mext_1220 serine-type D-Ala-D-Ala carboxypeptidase YP_001831501.1 TIGRFAM: acetoin reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ilo:IL0792 acetoin(diacetyl) reductase YP_001831502.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mex:Mext_1219 cobalamin synthesis protein P47K YP_001831503.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001831504.1 KEGG: nwi:Nwi_0316 cell division transporter substrate-binding protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001831505.1 KEGG: xau:Xaut_0022 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_001831506.1 PFAM: protein of unknown function DUF214; KEGG: mex:Mext_2864 protein of unknown function DUF214 YP_001831507.1 KEGG: psa:PST_4184 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001831508.1 KEGG: mex:Mext_3338 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein YP_001831509.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX2077 ferric siderophore receptor YP_001831510.1 KEGG: bcs:BCAN_A0546 hypothetical protein YP_001831511.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_3103 GCN5-related N-acetyltransferase YP_001831512.1 PFAM: TonB-dependent receptor; KEGG: azo:azo3844 putative TonB-dependent receptor YP_001831513.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: mex:Mext_2754 oligoendopeptidase, PepF/M3 family YP_001831514.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bpd:BURPS668_3127 oxidoreductase, zinc-binding dehydrogenase family YP_001831515.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: azc:AZC_0109 helicase YP_001831516.1 KEGG: bja:blr1149 hypothetical protein YP_001831517.1 KEGG: mes:Meso_2586 hypothetical protein YP_001831518.1 PFAM: histone family protein DNA-binding protein; KEGG: bbt:BBta_4630 integration host factor alpha-subunit (IHF-alpha) YP_001831519.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: xcb:XC_0373 glycerol-3-phosphate regulon repressor YP_001831520.1 PFAM: FAD dependent oxidoreductase; KEGG: rru:Rru_A1508 FAD dependent oxidoreductase YP_001831521.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: tma:TM1429 glycerol uptake facilitator protein YP_001831522.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cau:Caur_3292 glycerol kinase YP_001831523.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: sme:SMb21406 hypothetical protein YP_001831524.1 TIGRFAM: DNA ligase D; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: mes:Meso_1150 ATP dependent DNA ligase YP_001831525.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: sme:SMa0426 hypothetical protein YP_001831526.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: bhe:BH13400 putative cell filamentation protein YP_001831528.1 KEGG: azc:AZC_2257 ATP corrinoid adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_001831529.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: azc:AZC_2258 cobyric acid synthase YP_001831530.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: bbt:BBta_3137 cobalamin biosynthetic protein (anaerobic pathway of cobalamin biosynthesis, CobD) YP_001831531.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: xau:Xaut_5025 aminotransferase class I and II YP_001831532.1 KEGG: bcs:BCAN_B0384 hypothetical protein YP_001831533.1 KEGG: rpc:RPC_3632 hypothetical protein YP_001831534.1 KEGG: bov:BOV_A0332 hypothetical protein YP_001831535.1 KEGG: bra:BRADO5449 Mo/Fe nitrogenase specific transcriptional regulator, NifA; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001831536.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azc:AZC_1043 ferredoxin YP_001831537.1 PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: gdi:GDI0432 hypothetical protein YP_001831538.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: mca:MCA0204 nitrogenase cofactor biosynthesis protein NifB YP_001831539.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azc:AZC_3415 2(4Fe-4S) ferredoxin YP_001831540.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azc:AZC_3416 HesB/YadR/YfhF family protein YP_001831541.1 KEGG: xau:Xaut_0114 hypothetical protein YP_001831542.1 PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: bra:BRADO5416 conserved hypothetical protein (superfamily of ARM repeat); LRV protein Fes4 cluster in N-terminus YP_001831543.1 PFAM: NifZ family protein; KEGG: azc:AZC_3419 iron-sulfur cofactor synthesis protein YP_001831544.1 PFAM: NifZ family protein; KEGG: rpd:RPD_1069 hypothetical protein YP_001831545.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mca:MCA0212 cysteine desulfurase YP_001831546.1 TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: mca:MCA0213 hypothetical protein YP_001831547.1 KEGG: rpc:RPC_4465 hypothetical protein YP_001831548.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: xau:Xaut_0120 DegT/DnrJ/EryC1/StrS aminotransferase YP_001831549.1 KEGG: azc:AZC_3424 2Fe-2S ferredoxin YP_001831550.1 KEGG: mca:MCA0217 hypothetical protein YP_001831551.1 KEGG: rpe:RPE_4534 hypothetical protein YP_001831552.1 PFAM: globin; KEGG: bra:BRADO5406 putative hemoglobin protein (truncated hemoglobin) YP_001831553.1 KEGG: pna:Pnap_2347 hypothetical protein YP_001831554.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: xau:Xaut_2059 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_001831555.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001831556.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001831557.1 TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: xau:Xaut_2055 GTP-binding protein Obg/CgtA YP_001831558.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_4412 GCN5-related N-acetyltransferase YP_001831559.1 involved in the peptidyltransferase reaction during translation YP_001831560.1 PFAM: ribosomal protein L21; KEGG: ret:RHE_CH04062 50S ribosomal protein L21 YP_001831561.1 PFAM: Peptidase M23; KEGG: mex:Mext_1023 peptidase M23B YP_001831562.1 PFAM: protein of unknown function DUF925; KEGG: psa:PST_0216 hypothetical protein YP_001831563.1 KEGG: rru:Rru_A1314 hypothetical protein YP_001831564.1 PFAM: protein of unknown function DUF1345; KEGG: dar:Daro_0590 protein of unknown function DUF1345 YP_001831565.1 PFAM: Polyprenyl synthetase; KEGG: xau:Xaut_0205 polyprenyl synthetase YP_001831566.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: mex:Mext_2530 monofunctional biosynthetic peptidoglycan transglycosylase YP_001831567.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001831568.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpd:RPD_0305 acetoacetyl-CoA reductase YP_001831569.1 KEGG: mex:Mext_3469 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001831570.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: bja:blr0227 hypothetical protein YP_001831571.1 PFAM: protein of unknown function DUF985; KEGG: bja:blr0223 hypothetical protein YP_001831572.1 KEGG: rpe:RPE_0164 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_001831573.1 PFAM: Methyltransferase type 11; KEGG: mex:Mext_2509 methyltransferase type 11 YP_001831574.1 PFAM: phospholipase/Carboxylesterase; KEGG: xau:Xaut_3842 phospholipase/carboxylesterase YP_001831575.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: rpc:RPC_4885 glutamyl-Q tRNA(Asp) synthetase YP_001831576.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001831577.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mex:Mext_3274 UTP-glucose-1-phosphate uridylyltransferase YP_001831579.1 KEGG: mag:amb3806 spore coat polysaccharide biosynthesis protein F YP_001831581.1 KEGG: azc:AZC_2414 phosphoribosylaminoimidazole carboxylase ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_001831582.1 KEGG: bra:BRADO1206 phosphoribosylaminoimidazole carboxylase catalytic subunit (AIR carboxylase) (AirC); TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001831583.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1840 TPR repeat-containing protein YP_001831584.1 PFAM: protein of unknown function DUF465; KEGG: rpb:RPB_1449 protein of unknown function DUF465 YP_001831585.1 PFAM: protein of unknown function DUF465; KEGG: xau:Xaut_2598 protein of unknown function DUF465 YP_001831586.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xau:Xaut_0194 exodeoxyribonuclease III Xth YP_001831587.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: mex:Mext_4033 outer membrane lipoprotein carrier protein LolA YP_001831588.1 PFAM: phospholipase/Carboxylesterase; KEGG: xau:Xaut_1494 phospholipase/carboxylesterase YP_001831589.1 PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_2255 glycosyltransferases probably involved in cell wall biogenesis-like YP_001831590.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO5242 hypothetical protein; putative SAM-dependent methyltransferase domain YP_001831591.1 PFAM: fatty acid hydroxylase; KEGG: osa:4352850 Os12g0628400 YP_001831592.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm YP_001831593.1 KEGG: mlo:mlr5650 ceramide glucosyltransferase YP_001831594.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_001831595.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_0302 ErfK/YbiS/YcfS/YnhG family protein YP_001831596.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: xau:Xaut_2798 GTP-binding protein TypA YP_001831597.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; KEGG: azc:AZC_2290 putative Na+/phosphate symporter YP_001831598.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: mex:Mext_4827 6-phosphogluconolactonase YP_001831599.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: nha:Nham_3274 Cof protein YP_001831600.1 KEGG: mex:Mext_2523 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_001831601.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_001831602.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: mex:Mext_4501 transketolase YP_001831603.1 KEGG: scl:sce0923 haloacetate dehalogenase; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_001831604.1 PFAM: Glutathione S-transferase domain; KEGG: scl:sce6962 probable glutathione S-transferase YP_001831605.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_4490 LysR substrate-binding YP_001831606.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: mex:Mext_2101 cell divisionFtsK/SpoIIIE YP_001831609.1 KEGG: nha:Nham_2959 hypothetical protein YP_001831610.1 KEGG: xau:Xaut_1672 hypothetical protein YP_001831611.1 PFAM: Rhodanese domain protein; Ankyrin; KEGG: xau:Xaut_0147 rhodanese domain protein YP_001831612.1 PFAM: Rhodanese domain protein; KEGG: bbt:BBta_2171 hypothetical protein YP_001831613.1 TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: ter:Tery_3773 nitrogenase-associated protein YP_001831614.1 PFAM: response regulator receiver; KEGG: bbt:BBta_5880 putative transcriptional regulatory protein (protein CheY) YP_001831615.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis YP_001831616.1 KEGG: azc:AZC_1040 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001831617.1 KEGG: xau:Xaut_0090 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001831618.1 functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe YP_001831619.1 KEGG: mca:MCA0234 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1 YP_001831620.1 TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: bbt:BBta_5920 nitrogenase molybdenum-iron protein NifX YP_001831621.1 TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: rpc:RPC_4457 protein of unknown function DUF269 YP_001831622.1 PFAM: protein of unknown function DUF683; KEGG: bra:BRADO5433 conserved hypothetical protein (DUF683) YP_001831623.1 TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azc:AZC_1034 ferredoxin YP_001831624.1 PFAM: NifQ family protein; KEGG: rpd:RPD_1082 NifQ YP_001831625.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpd:RPD_1083 HesB/YadR/YfhF YP_001831626.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: rpb:RPB_0980 nitrogen-fixing NifU-like protein YP_001831627.1 TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: rpa:RPA4607 putative homocitrate synthase YP_001831628.1 PFAM: nitrogen fixation protein NifW; KEGG: rpd:RPD_1087 nitrogenase stabilizing/protective protein YP_001831629.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: mlo:mll5862 nitrogen fixation protein,FixA YP_001831630.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: azc:AZC_3448 FixB protein YP_001831631.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: azc:AZC_3449 protein FixC YP_001831632.1 KEGG: xau:Xaut_0139 putative ferredoxin protein, FixX YP_001831633.1 PFAM: ferric-uptake regulator; KEGG: azc:AZC_0367 putative Fe2+/Zn2+ uptake regulation protein YP_001831634.1 KEGG: xau:Xaut_2910 hypothetical protein YP_001831636.1 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_001831637.1 PFAM: response regulator receiver; KEGG: psa:PST_4184 sensory box histidine kinase/response regulator YP_001831638.1 KEGG: nha:Nham_3693 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_001831639.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: azc:AZC_0797 methionyl-tRNA formyltransferase YP_001831640.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001831641.1 KEGG: nwi:Nwi_0402 hypothetical protein YP_001831642.1 KEGG: gvi:gll2512 hypothetical protein YP_001831643.1 KEGG: azc:AZC_4001 inner membrane protein YP_001831644.1 KEGG: rca:Rcas_3511 hypothetical protein YP_001831645.1 KEGG: fra:Francci3_4500 4Fe-4S ferredoxin, iron-sulfur binding YP_001831646.1 PFAM: cyclic nucleotide-binding; KEGG: ace:Acel_1016 cyclic nucleotide-binding protein YP_001831647.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: scl:sce4573 hydroxylase or oxidoreductase YP_001831648.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: fra:Francci3_4497 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_001831649.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: ace:Acel_1019 nickel-dependent hydrogenase, large subunit YP_001831650.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: fra:Francci3_4495 peptidase M52, hydrogen uptake protein YP_001831651.1 PFAM: protein of unknown function DUF1058; KEGG: azc:AZC_0237 hypothetical protein YP_001831652.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: xau:Xaut_4126 glyoxylate reductase YP_001831653.1 PFAM: heat shock protein Hsp20; KEGG: rpe:RPE_0435 heat shock protein HSP20 YP_001831654.1 PFAM: protein of unknown function DUF1150; KEGG: xau:Xaut_2033 protein of unknown function DUF1150 YP_001831655.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001831656.1 TIGRFAM: methyltransferase FkbM family; KEGG: gbe:GbCGDNIH1_1535 methyltransferase YP_001831657.1 KEGG: mex:Mext_3709 hypothetical protein YP_001831658.1 KEGG: eba:ebA1583 hypothetical protein YP_001831659.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3168 glycosyl transferase, family 2 YP_001831660.1 KEGG: spc:Sputcn32_3895 hypothetical protein YP_001831661.1 PFAM: glycosyl transferase group 1; KEGG: gur:Gura_3169 glycosyl transferase, group 1 YP_001831662.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001831663.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: cak:Caul_2660 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_001831664.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ppu:PP_3226 acyl-CoA dehydrogenase-related protein YP_001831665.1 KEGG: pfl:PFL_1382 ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family, putative YP_001831666.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpd:BURPS668_0795 regulatory protein, LysR:LysR, substrate-binding YP_001831667.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bam:Bamb_3674 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein YP_001831668.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mex:Mext_1617 protein TolR YP_001831669.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mag:amb3214 biopolymer transport protein YP_001831670.1 TIGRFAM: TonB family protein; KEGG: pfo:Pfl_3737 TonB-like YP_001831671.1 PFAM: protein of unknown function DUF55; KEGG: ret:RHE_CH00838 hypothetical protein YP_001831672.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH00839 putative glyoxalase protein YP_001831673.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: bpt:Bpet1599 hypothetical protein YP_001831674.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pla:Plav_2215 methyltransferase type 11 YP_001831675.1 KEGG: vpa:VP2004 hypothetical protein YP_001831676.1 KEGG: zmo:ZMO0094 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_001831677.1 PFAM: Malonyl-CoA decarboxylase; KEGG: bja:blr6729 putative decarboxylase YP_001831678.1 PFAM: Integral membrane protein TerC; KEGG: mex:Mext_1566 integral membrane protein TerC YP_001831679.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001831680.1 PFAM: ferredoxin; KEGG: mlo:msl0793 ferredoxin YP_001831681.1 PFAM: CBS domain containing protein; peptidase M50; KEGG: mes:Meso_2201 peptidase M50 YP_001831682.1 PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: mex:Mext_0276 carboxypeptidase Taq YP_001831683.1 PFAM: protein of unknown function DUF949; KEGG: mex:Mext_4457 protein of unknown function DUF949 YP_001831684.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001831685.1 PFAM: monooxygenase FAD-binding; KEGG: atc:AGR_L_226 hypothetical protein YP_001831686.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ava:Ava_4090 cold-shock DNA-binding domain protein YP_001831687.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gdi:GDI3480 putative transcriptional regulator LysR YP_001831688.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bbt:BBta_4871 putative ferrodoxin YP_001831689.1 PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbt:BBta_4872 putative fumarate/succinate reductase flavoprotein subunit YP_001831690.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nar:Saro_1708 TonB-dependent receptor YP_001831691.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsq:Rsph17025_0748 ABC transporter related YP_001831692.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_3168 sulfate ester transporter permease component YP_001831693.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_3169 sulfate ester transport system permease protein YP_001831694.1 KEGG: azc:AZC_3170 sulfate ester transport system substrate-binding protein YP_001831695.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: ppg:PputGB1_0233 taurine dioxygenase YP_001831696.1 PFAM: sulfatase; KEGG: nar:Saro_0474 sulfatase YP_001831697.1 PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0358 major facilitator superfamily MFS_1 YP_001831698.1 KEGG: xau:Xaut_1107 hypothetical protein YP_001831699.1 PFAM: protein of unknown function DUF162; KEGG: pde:Pden_2924 protein of unknown function DUF162 YP_001831700.1 PFAM: protein of unknown function DUF162; KEGG: pde:Pden_2925 iron-sulfur cluster binding protein YP_001831701.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pde:Pden_2926 protein of unknown function DUF224, cysteine-rich region domain protein YP_001831702.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: azc:AZC_4251 L-lactate transport precursor YP_001831703.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: mex:Mext_2639 maleylacetoacetate isomerase YP_001831704.1 PFAM: protein of unknown function UPF0066; KEGG: xau:Xaut_4390 protein of unknown function UPF0066 YP_001831705.1 PFAM: Citrate transporter; KEGG: rso:RSc2518 hypothetical protein YP_001831706.1 KEGG: rpe:RPE_0360 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001831707.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_5661 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001831708.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: rpc:RPC_0415 RNA polymerase factor sigma-54 YP_001831709.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_3926 putative ABC transporter ATP-binding protein in NtrA/RpoN 5'region YP_001831711.1 PFAM: OstA family protein; KEGG: mex:Mext_2499 OstA family protein YP_001831712.1 PFAM: protein of unknown function DUF1239; KEGG: bbt:BBta_0124 hypothetical protein YP_001831713.1 PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease YP_001831714.1 KEGG: azc:AZC_0229 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_001831715.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: nwi:Nwi_0586 methionine biosynthesis MetW YP_001831716.1 PFAM: amino acid permease-associated region; KEGG: rso:RS02383 probable amino acid transporter transmembrane protein YP_001831717.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_0622 ABC transporter, ATP-binding protein YP_001831718.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: smd:Smed_2363 transcriptional regulator, LysR family YP_001831719.1 PFAM: beta-lactamase domain protein; KEGG: mex:Mext_0756 beta-lactamase domain protein YP_001831720.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:RL3780 putative LysR family transcriptional regulator YP_001831721.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hch:HCH_02025 short-chain alcohol dehydrogenase-like protein YP_001831722.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: rle:RL3778 putative short-chain dehydrogenase/reductase YP_001831723.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: bmu:Bmul_4948 Na+/H+ antiporter YP_001831724.1 PFAM: Inorganic pyrophosphatase; KEGG: xau:Xaut_2496 inorganic diphosphatase YP_001831725.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA0410 GCN5-related N-acetyltransferase YP_001831726.1 KEGG: mex:Mext_2339 hypothetical protein YP_001831727.1 PFAM: Nucleotidyl transferase; KEGG: rpc:RPC_0385 nucleotidyl transferase YP_001831728.1 PFAM: aminoglycoside phosphotransferase; protein of unknown function UPF0079; KEGG: mex:Mext_4431 protein of unknown function UPF0079 YP_001831729.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_4432 ATP-binding region ATPase domain protein YP_001831730.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001831731.1 PFAM: glycosyl transferase group 1; KEGG: mpt:Mpe_A0734 glycosyltransferase-like protein YP_001831732.1 PFAM: glycosyl transferase family 2; KEGG: gvi:gll1794 probable glycosyltransferase YP_001831733.1 KEGG: ana:alr0587 unknown protein YP_001831734.1 KEGG: mag:amb3714 predicted permease YP_001831735.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmt:PMT0108 ABC transporter, ATP binding protein YP_001831736.1 PFAM: ABC-2 type transporter; KEGG: bxe:Bxe_A3799 ABC O-antigen/lipopolysaccharide exporter, inner membrane subunit YP_001831737.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: azc:AZC_3545 2-isopropylmalate synthase YP_001831738.1 KEGG: xau:Xaut_4348 hypothetical protein YP_001831740.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sus:Acid_1340 alkylhydroperoxidase like protein, AhpD family YP_001831741.1 KEGG: xau:Xaut_0114 hypothetical protein YP_001831742.1 KEGG: bja:bll7386 hypothetical protein YP_001831743.1 KEGG: gox:GOX1434 hypothetical protein YP_001831744.1 PFAM: alpha-2-macroglobulin domain protein; N/apple PAN domain protein; alpha-2-macroglobulin domain protein 2; KEGG: sme:SMb21298 conserved hypothetical protein, possibly exported YP_001831745.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: rle:pRL110012 putative penicillin-binding family protein YP_001831746.1 PFAM: Integrase catalytic region; KEGG: oan:Oant_4683 integrase catalytic region YP_001831747.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mes:Meso_3689 transcriptional regulator, AraC family YP_001831748.1 KEGG: rle:RL3207 hypothetical protein YP_001831750.1 KEGG: mlo:mll4938 hypothetical protein YP_001831751.1 PFAM: carbonic anhydrase; KEGG: gdi:GDI2188 carbonic anhydrase 1 YP_001831752.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dol:Dole_1499 AMP-dependent synthetase and ligase YP_001831753.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mag:amb0634 enoyl-CoA hydratase/carnithine racemase YP_001831754.1 KEGG: rle:pRL110406 putative 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding YP_001831755.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: atc:AGR_L_2647 probable enoyl-CoA hydratase YP_001831756.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xau:Xaut_2190 acyl-CoA dehydrogenase domain protein YP_001831757.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: azc:AZC_0575 methylmalonate-semialdehyde dehydrogenase YP_001831758.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_2194 transcriptional regulator, LysR family YP_001831759.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3524 short-chain dehydrogenase/reductase SDR YP_001831760.1 KEGG: bmu:Bmul_6011 hypothetical protein YP_001831761.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: gdi:GDI1197 D-2-hydroxyacid dehydrogensase YP_001831762.1 KEGG: gdi:GDI1198 putative 2-keto-4-pentenoate hydratase-like YP_001831763.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: csa:Csal_0272 transcriptional regulator, LacI family YP_001831764.1 KEGG: gdi:GDI3115 shikimate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_001831765.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: gdi:GDI1200 oxidoreductase protein YP_001831766.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ecc:c5022 putative transmembrane transport protein YP_001831767.1 PFAM: porin; KEGG: mex:Mext_3186 porin YP_001831768.1 KEGG: xau:Xaut_1019 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase YP_001831769.1 KEGG: reh:H16_A3602 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001831771.1 KEGG: xfa:XF1673 hypothetical protein YP_001831772.1 PFAM: protein of unknown function DUF264; KEGG: bvi:Bcep1808_1170 protein of unknown function DUF264 YP_001831773.1 KEGG: ngo:NGO0496 hypothetical protein, putative phage associated protein YP_001831774.1 KEGG: ngo:NGO0497 hypothetical protein, putative phage associated protein YP_001831775.1 KEGG: ngo:NGO0498 hypothetical protein, putative phage associated protein YP_001831777.1 KEGG: mag:amb1781 hypothetical protein YP_001831779.1 KEGG: aci:ACIAD2161 hypothetical protein YP_001831780.1 KEGG: aci:ACIAD2160 hypothetical protein YP_001831782.1 KEGG: aci:ACIAD2156 hypothetical protein; putative phage tail tape meausure protein YP_001831783.1 KEGG: aba:Acid345_4695 nuclease-related protein YP_001831785.1 KEGG: azo:azo2957 hypothetical protein YP_001831786.1 PFAM: Chromate transporter; KEGG: ana:all1110 chromate transport protein YP_001831787.1 PFAM: Chromate transporter; KEGG: ccr:CC_1097 chromate transporter, putative YP_001831788.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: mex:Mext_4656 DNA polymerase III chi subunit HolC YP_001831789.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: bja:blr4108 leucyl aminopeptidase YP_001831790.1 PFAM: permease YjgP/YjgQ family protein; KEGG: mex:Mext_3649 permease YjgP/YjgQ family protein YP_001831791.1 PFAM: Organic solvent tolerance protein; KEGG: mex:Mext_3648 organic solvent tolerance protein YP_001831792.1 KEGG: rpa:RPA3064 hypothetical protein YP_001831793.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: xau:Xaut_2833 dimethyladenosine transferase YP_001831794.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gdi:GDI0340 NADPH dehydrogenase YP_001831795.1 PFAM: membrane protein of uknown function UCP014873; KEGG: mex:Mext_1191 membrane protein of uknown function UCP014873 YP_001831796.1 PFAM: MgtC/SapB transporter; KEGG: nha:Nham_0456 MgtC/SapB transporter YP_001831797.1 TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mex:Mext_1044 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_001831798.1 KEGG: xau:Xaut_2732 putative exported protein of unknown function YP_001831799.1 PFAM: ribonuclease T2; KEGG: mex:Mext_0919 ribonuclease T2 YP_001831800.1 PFAM: protein of unknown function DUF519; KEGG: mlo:mlr7888 hypothetical protein YP_001831801.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rpd:RPD_1283 cold-shock protein, DNA-binding YP_001831802.1 KEGG: mex:Mext_0017 hypothetical protein YP_001831804.1 KEGG: rru:Rru_A0360 methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_001831805.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bra:BRADO6635 putative arsenate reductase (ArsC-like) YP_001831806.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_1983 hypothetical protein YP_001831807.1 PFAM: histidinol dehydrogenase; KEGG: rpb:RPB_4350 histidinol dehydrogenase YP_001831808.1 KEGG: nwi:Nwi_2333 hypothetical protein YP_001831809.1 KEGG: mex:Mext_2673 hypothetical protein YP_001831810.1 PFAM: NUDIX hydrolase; KEGG: bbt:BBta_6065 hypothetical protein YP_001831811.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_0473 ATPase YP_001831812.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpt:Bpet3984 transcriptional regulator, LysR-family YP_001831813.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bpt:Bpet3983 quinone oxidoreductase YP_001831814.1 KEGG: xau:Xaut_3460 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein YP_001831815.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_3459 binding-protein-dependent transport systems inner membrane component YP_001831816.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_3458 ABC transporter related YP_001831819.1 KEGG: bcs:BCAN_A1643 PAS domain S-box; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001831822.1 PFAM: protein of unknown function UPF0040; KEGG: azc:AZC_4547 MraZ protein YP_001831823.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: bja:bll6610 S-adenosyl-methyltransferase YP_001831824.1 KEGG: azc:AZC_4545 hypothetical protein YP_001831825.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: mex:Mext_4639 peptidoglycan glycosyltransferase YP_001831826.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rpc:RPC_2189 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001831827.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rpd:RPD_3398 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_001831828.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001831829.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001831830.1 PFAM: cell cycle protein; KEGG: mex:Mext_2940 cell cycle protein YP_001831831.1 KEGG: azc:AZC_4555 N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain YP_001831832.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001831833.1 KEGG: xau:Xaut_0324 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_001831834.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001831835.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: mex:Mext_2947 polypeptide-transport-associated domain protein FtsQ-type YP_001831836.1 PFAM: cell division protein FtsA; KEGG: mex:Mext_2948 cell division protein FtsA YP_001831837.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: xau:Xaut_0328 cell division protein FtsZ YP_001831838.1 KEGG: mex:Mext_2951 putative lipoprotein YP_001831839.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: bja:bll6593 DNA repair protein YP_001831840.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bxe:Bxe_B2942 hypothetical protein YP_001831841.1 PFAM: alpha/beta hydrolase fold; KEGG: pla:Plav_0555 alpha/beta hydrolase fold YP_001831844.1 KEGG: bcs:BCAN_A0546 hypothetical protein YP_001831845.1 KEGG: xau:Xaut_1762 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase YP_001831846.1 KEGG: rpa:RPA3316 possible chemotaxis CheB/CheR fusion protein; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; HWE histidine kinase; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001831847.1 SMART: response regulator receiver; KEGG: mex:Mext_0407 response regulator receiver YP_001831848.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpa:RPA0206 putative cytochrome c biogenesis protein, thiol:disulfide interchange protein YP_001831850.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: rpe:RPE_0313 heme exporter protein CcmC YP_001831851.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: rpa:RPA1068 glycine cleavage T protein (aminomethyl transferase) YP_001831852.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001831853.1 KEGG: bra:BRADO4333 hypothetical protein YP_001831854.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_4300 hypothetical protein YP_001831855.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_4299 NUDIX hydrolase YP_001831856.1 KEGG: azc:AZC_0487 hypothetical protein YP_001831857.1 PFAM: protein of unknown function DUF179; KEGG: rpe:RPE_0714 protein of unknown function DUF179 YP_001831858.1 KEGG: mex:Mext_2032 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001831859.1 PFAM: GCN5-related N-acetyltransferase; KEGG: oan:Oant_0597 GCN5-related N-acetyltransferase YP_001831860.1 PFAM: peptidase M16 domain protein; KEGG: azc:AZC_2240 mitochondrial processing peptidase-like protein YP_001831861.1 KEGG: xau:Xaut_3524 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_001831862.1 PFAM: Surfeit locus 1 family protein; KEGG: azc:AZC_2953 putative surfeit locus protein YP_001831863.1 PFAM: protein of unknown function DUF983; KEGG: rle:RL1028 putative transmembrane protein YP_001831864.1 PFAM: cytochrome c oxidase subunit III; KEGG: rpd:RPD_0819 cytochrome c oxidase, subunit III YP_001831865.1 PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: bra:BRADO6703 cytochrome c oxidase assembly protein YP_001831866.1 KEGG: xau:Xaut_4645 conserved protein CoxF YP_001831867.1 converts protoheme IX and farnesyl diphosphate to heme O YP_001831868.1 KEGG: oan:Oant_0582 cytochrome c oxidase subunit I type; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_001831869.1 KEGG: azc:AZC_2960 cytochrome c oxidase subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region YP_001831870.1 PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein YP_001831871.1 KEGG: azc:AZC_4244 hypothetical protein YP_001831872.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: azc:AZC_4245 glycine cleavage system T protein YP_001831873.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001831874.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_001831875.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_001831876.1 KEGG: psa:PST_1093 L-sorbosone dehydrogenase YP_001831877.1 KEGG: bja:bsr7045 hypothetical protein YP_001831878.1 KEGG: azc:AZC_0893 hypothetical protein YP_001831879.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: xau:Xaut_1976 H+transporting two-sector ATPase B/B' subunit YP_001831880.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mex:Mext_3173 H+transporting two-sector ATPase B/B' subunit YP_001831881.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: xau:Xaut_1978 H+transporting two-sector ATPase C subunit YP_001831882.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001831883.1 KEGG: mag:amb3992 ATP synthase protein I YP_001831884.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: xau:Xaut_1981 chromosome segregation protein SMC YP_001831885.1 PFAM: DSBA oxidoreductase; KEGG: mex:Mext_3177 DsbA oxidoreductase YP_001831886.1 PFAM: protein of unknown function DUF1159; KEGG: azc:AZC_0457 hypothetical protein YP_001831887.1 KEGG: azc:AZC_0456 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_001831889.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mex:Mext_3181 DNA methylase N-4/N-6 domain protein YP_001831890.1 KEGG: azc:AZC_2332 DAHP synthetase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II YP_001831891.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bbt:BBta_6127 putative extradiol ring-cleavage dioxygenase YP_001831892.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001831893.1 KEGG: nar:Saro_3091 hypothetical protein YP_001831894.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein YP_001831895.1 KEGG: gdi:GDI2237 hypothetical protein YP_001831896.1 KEGG: rpe:RPE_0755 DedA family YP_001831897.1 KEGG: bja:blr1340 hypothetical protein YP_001831898.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: mex:Mext_1640 radical SAM enzyme, Cfr family YP_001831899.1 PFAM: protein of unknown function DUF541; KEGG: rpc:RPC_0217 protein of unknown function DUF541 YP_001831900.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: xoo:XOO0606 XorII very-short-patch-repair endonuclease YP_001831902.1 KEGG: ter:Tery_0137 hypothetical protein YP_001831903.1 KEGG: sus:Acid_1680 hypothetical protein YP_001831904.1 PFAM: protein of unknown function DUF262; KEGG: pth:PTH_0153 hypothetical protein YP_001831905.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: esa:ESA_pESA2p06562 hypothetical protein YP_001831906.1 KEGG: rru:Rru_A1927 acetyl-CoA hydrolase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase YP_001831907.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: reu:Reut_C5986 NAD(P)H dehydrogenase (quinone):flavodoxin/nitric oxide synthase YP_001831908.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_001831909.1 PFAM: Abortive infection protein; KEGG: pcl:Pcal_0124 abortive infection protein YP_001831910.1 PFAM: protein of unknown function DUF1321; KEGG: mex:Mext_2662 protein of unknown function DUF1321 YP_001831911.1 KEGG: azc:AZC_2567 hypothetical protein YP_001831912.1 KEGG: atc:AGR_C_3716 hypothetical protein YP_001831913.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gdi:GDI2473 alcohol dehydrogenase YP_001831914.1 PFAM: Aldehyde Dehydrogenase_; KEGG: ppu:PP_2488 succinic-semialdehyde dehydrogenase, putative YP_001831915.1 PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: nwi:Nwi_2367 ribosomal L11 methyltransferase YP_001831916.1 PFAM: OmpW family protein; KEGG: xau:Xaut_1968 OmpW family protein YP_001831917.1 KEGG: mex:Mext_0401 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 YP_001831918.1 PFAM: Ham1 family protein; KEGG: mex:Mext_0402 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family YP_001831919.1 KEGG: rpd:RPD_2935 hypothetical protein YP_001831921.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein YP_001831923.1 KEGG: bra:BRADO1008 hypothetical protein YP_001831924.1 KEGG: bja:blr4318 hypothetical protein YP_001831926.1 PFAM: UvrD/REP helicase; KEGG: rpa:RPA3506 DNA helicase II YP_001831927.1 PFAM: aldo/keto reductase; KEGG: xau:Xaut_0990 aldo/keto reductase YP_001831930.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpl:BURPS1106A_1730 transcriptional regulator, LysR family YP_001831931.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gdi:GDI2842 putative NAD dependent epimerase/dehydratase protein YP_001831934.1 KEGG: mex:Mext_1948 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_001831935.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: maq:Maqu_1687 NAD-dependent epimerase/dehydratase YP_001831936.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: rpc:RPC_4304 PDZ/DHR/GLGF YP_001831938.1 PFAM: Gp37Gp68 family protein; KEGG: nfa:nfa39500 hypothetical protein YP_001831939.1 KEGG: rpe:RPE_2366 hypothetical protein YP_001831940.1 KEGG: gur:Gura_3491 GTPase or GTP-binding protein-like protein YP_001831941.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: rpa:RPA0951 nucleoside 2-deoxyribosyltransferase YP_001831942.1 PFAM: Aldose 1-epimerase; KEGG: mex:Mext_2623 aldose 1-epimerase YP_001831943.1 KEGG: gdi:GDI3845 hypothetical protein YP_001831944.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: mlo:mlr6508 methylenetetrahydrofolate dehydrogenase YP_001831945.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase YP_001831946.1 KEGG: mex:Mext_1606 hypothetical protein YP_001831947.1 PFAM: cytochrome oxidase assembly; KEGG: bja:bll4968 cytochrome oxidase assembly factor YP_001831948.1 PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_7850 putative HlyD-family secretion protein YP_001831949.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: bbt:BBta_7849 putative ABC transporter (protein fusion consisting of two ATP-binding domains and permease) YP_001831950.1 PFAM: ABC-2 type transporter; KEGG: bbt:BBta_7848 putative ABC transporter (permease protein) YP_001831951.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_001831952.1 TIGRFAM: dethiobiotin synthase; KEGG: gbe:GbCGDNIH1_0496 dethiobiotin synthetase YP_001831953.1 KEGG: ccr:CC_1576 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; aminotransferase class-III YP_001831954.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: gdi:GDI1919 putative adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001831956.1 PFAM: acyltransferase 3; KEGG: bcz:BCZK5150 probable membrane protein YP_001831958.1 KEGG: atc:AGR_C_19 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_001831959.1 KEGG: bbt:BBta_2168 hypothetical protein YP_001831960.1 KEGG: xau:Xaut_0101 hypothetical protein YP_001831961.1 KEGG: bra:BRADO5428 hypothetical protein YP_001831962.1 KEGG: rpa:RPA4433 endopeptidase Clp: ATP-binding subunit B, ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001831963.1 KEGG: mex:Mext_0953 hypothetical protein YP_001831964.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: bbt:BBta_7605 putative protein methyltransferase HemK modifies release factors RF-1 and RF-2 YP_001831965.1 molecular chaperone YP_001831966.1 KEGG: bja:bll0464 hypothetical protein YP_001831967.1 PFAM: protein of unknown function UPF0005; KEGG: azc:AZC_0959 hypothetical protein YP_001831968.1 PFAM: protein of unknown function DUF214; KEGG: bja:blr0461 probable ABC transporter permease protein YP_001831969.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_0285 ABC transporter related YP_001831970.1 PFAM: lipolytic protein G-D-S-L family; KEGG: mex:Mext_3994 lipolytic protein G-D-S-L family YP_001831971.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: bra:BRADO0401 putative 2'-5' RNA ligase YP_001831972.1 PFAM: cytochrome P450; KEGG: mex:Mext_2663 cytochrome P450 YP_001831974.1 PFAM: polysaccharide export protein; KEGG: har:HEAR0714 putative polysaccharide export protein YP_001831975.1 PFAM: glycosyl transferase group 1; KEGG: bra:BRADO7078 putative glycosyl transferase, group 1 family protein YP_001831976.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: pla:Plav_1906 non-specific protein-tyrosine kinase YP_001831977.1 PFAM: glycosyl transferase family 2; KEGG: bpd:BURPS668_A2618 glycosyl transferase, group 2 family protein YP_001831978.1 PFAM: glycosyl transferase group 1; KEGG: hau:Haur_4807 phosphatidylinositol alpha-mannosyltransferase YP_001831979.1 PFAM: glycosyl transferase group 1; KEGG: bmu:Bmul_4910 glycosyl transferase group 1 YP_001831980.1 PFAM: glycosyl transferase group 1; KEGG: amr:AM1_1894 glycosyl transferase, group 1 family protein YP_001831981.1 KEGG: ava:Ava_1124 hypothetical protein YP_001831982.1 KEGG: det:DET0108 endonuclease/exonuclease/phosphatase family protein YP_001831983.1 PFAM: glycosyl transferase family 2; KEGG: reh:H16_B0041 predicted glycosyltransferase YP_001831984.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pst:PSPTO_2149 pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component YP_001831985.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain YP_001831986.1 PFAM: Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: mes:Meso_2581 condensation domain YP_001831987.1 KEGG: bha:BH0727 hypothetical protein YP_001831988.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: mes:Meso_2583 4'-phosphopantetheinyl transferase YP_001831989.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: xau:Xaut_4749 aminopeptidase N YP_001831990.1 KEGG: bja:bll4707 hypothetical protein YP_001831991.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_1501 AMP-dependent synthetase and ligase YP_001831992.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rpd:RPD_2019 cation diffusion facilitator family transporter YP_001831993.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hha:Hhal_0152 glyoxalase/bleomycin resistance protein/dioxygenase YP_001831994.1 PFAM: Polyprenyl synthetase; KEGG: xau:Xaut_1373 polyprenyl synthetase YP_001831995.1 PFAM: cell wall hydrolase SleB; KEGG: mex:Mext_2889 cell wall hydrolase SleB YP_001831996.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mex:Mext_3111 tetratricopeptide TPR_2 repeat protein YP_001831997.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001831998.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_0746 TonB-dependent siderophore receptor YP_001831999.1 KEGG: nwi:Nwi_0880 hypothetical protein YP_001832000.1 KEGG: mes:Meso_1012 HpcH/HpaI aldolase YP_001832001.1 PFAM: NUDIX hydrolase; KEGG: acr:Acry_0324 NUDIX hydrolase YP_001832002.1 PFAM: ATP-NAD/AcoX kinase; KEGG: mex:Mext_0549 NAD(+) kinase YP_001832003.1 KEGG: bur:Bcep18194_C6733 hypothetical protein YP_001832004.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: ava:Ava_4847 glycoside hydrolase, family 3-like YP_001832005.1 PFAM: Bile acid:sodium symporter; KEGG: cak:Caul_0525 bile acid:sodium symporter YP_001832007.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001832008.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: azc:AZC_1145 carbamoyl-phosphate synthase large subunit YP_001832009.1 KEGG: mex:Mext_2468 hypothetical protein YP_001832010.1 KEGG: mex:Mext_4039 hypothetical protein YP_001832011.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: rpe:RPE_2325 transglutaminase family protein cysteine peptidase, BTLCP YP_001832012.1 PFAM: aldo/keto reductase; KEGG: pap:PSPA7_4242 probable oxidoreductase YP_001832013.1 KEGG: mex:Mext_4257 hypothetical protein YP_001832014.1 PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: gbe:GbCGDNIH1_0861 nucleoside permease NupC YP_001832015.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azc:AZC_4173 short-chain dehydrogenase YP_001832016.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_2296 phosphoglycolate phosphatase YP_001832017.1 KEGG: mex:Mext_2297 hypothetical protein YP_001832018.1 KEGG: rpe:RPE_1987 ribose 5-phosphate isomerase; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase YP_001832019.1 KEGG: azc:AZC_2357 hypothetical protein YP_001832020.1 TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rpb:RPB_3384 glutathione reductase YP_001832022.1 PFAM: regulatory protein MarR; KEGG: mex:Mext_4235 regulatory protein MarR YP_001832023.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_1377 peptidoglycan-binding domain 1 protein YP_001832024.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: xau:Xaut_4413 protein of unknown function DUF900 hydrolase family protein YP_001832025.1 PFAM: transglutaminase domain protein; KEGG: rle:RL1406 putative transglutaminase family protein YP_001832026.1 PFAM: PEBP family protein; KEGG: mex:Mext_0960 PEBP family protein YP_001832027.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001832028.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: azc:AZC_4491 phosphoenolpyruvate-protein phosphotransferase YP_001832029.1 KEGG: mex:Mext_0958 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_001832030.1 KEGG: rpb:RPB_3901 transglycosylase-associated protein YP_001832031.1 PFAM: protein of unknown function DUF339; KEGG: mex:Mext_4162 protein of unknown function DUF339 YP_001832032.1 KEGG: mex:Mext_4163 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001832034.1 KEGG: bte:BTH_I3136 hypothetical protein YP_001832035.1 PFAM: protein of unknown function DUF1275; KEGG: azc:AZC_4159 hypothetical protein YP_001832037.1 KEGG: dar:Daro_2929 hypothetical protein YP_001832038.1 PFAM: regulatory protein TetR; KEGG: gbe:GbCGDNIH1_1544 transcriptional regulator, TetR family YP_001832039.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: gbe:GbCGDNIH1_1542 acriflavin resistance plasma membrane protein YP_001832040.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gbe:GbCGDNIH1_1543 acriflavin resistance periplasmic protein YP_001832042.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: reh:H16_B0887 ABC-type transporter, periplasmic component: TauT family YP_001832043.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ava:Ava_4760 flavin oxidoreductase/NADH oxidase YP_001832044.1 KEGG: mlo:mlr7299 nitrilotriacetate monooxygenase component A YP_001832045.1 PFAM: cytochrome c class I; KEGG: noc:Noc_2145 L-sorbosone dehydrogenase YP_001832046.1 Catalyzes the conversion of citrate to isocitrate YP_001832047.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: gdi:GDI0902 alcohol dehydrogenase YP_001832048.1 KEGG: rpc:RPC_3285 hypothetical protein YP_001832049.1 KEGG: gox:GOX2170 transmembrane protein YP_001832050.1 PFAM: major facilitator superfamily MFS_1; KEGG: acr:Acry_0630 major facilitator superfamily MFS_1 YP_001832051.1 PFAM: aldo/keto reductase; KEGG: gdi:GDI1640 oxidoreductase YP_001832052.1 PFAM: glycosyl transferase family 2; KEGG: mex:Mext_0589 glycosyl transferase family 2 YP_001832053.1 PFAM: inositol monophosphatase; KEGG: mex:Mext_0895 inositol monophosphatase YP_001832054.1 KEGG: azc:AZC_2380 hypothetical protein YP_001832055.1 KEGG: xau:Xaut_1414 hypothetical protein YP_001832057.1 PFAM: autoinducer synthesis protein; KEGG: bbt:BBta_5196 autoinducer synthesis protein YP_001832058.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: dsh:Dshi_2852 transcriptional regulator, LuxR family YP_001832059.1 PFAM: ribonuclease HII/HIII; KEGG: sme:SMc00867 ribonuclease HII YP_001832060.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bmt:BSUIS_A0415 radical SAM domain protein YP_001832061.1 PFAM: monooxygenase FAD-binding; KEGG: nha:Nham_2584 monooxygenase, FAD-binding YP_001832062.1 KEGG: mes:Meso_1118 hypothetical protein YP_001832063.1 PFAM: alpha/beta hydrolase fold; KEGG: azc:AZC_3461 alpha/beta hydrolase fold protein YP_001832064.1 KEGG: rpa:RPA3429 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein YP_001832065.1 KEGG: rpc:RPC_3143 hypothetical protein YP_001832066.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rpe:RPE_3166 ornithine decarboxylase YP_001832067.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_0639 GCN5-related N-acetyltransferase YP_001832068.1 PFAM: protein of unknown function DUF1457; KEGG: mex:Mext_2259 protein of unknown function DUF1457 YP_001832069.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: mex:Mext_3659 ribonuclease, Rne/Rng family YP_001832071.1 PFAM: cell wall hydrolase/autolysin; KEGG: rpe:RPE_2978 N-acetylmuramoyl-L-alanine amidase YP_001832072.1 KEGG: mex:Mext_3662 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001832073.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cak:Caul_3346 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_001832074.1 PFAM: Erythromycin esterase; KEGG: mes:Meso_3528 erythromycin esterase YP_001832075.1 KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_001832076.1 PFAM: Rhomboid family protein; KEGG: xau:Xaut_2361 rhomboid family protein YP_001832077.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2516 ABC transporter-related protein YP_001832078.1 KEGG: mex:Mext_2247 hypothetical protein YP_001832079.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; helix-turn-helix domain protein; KEGG: azc:AZC_3102 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001832080.1 KEGG: bmt:BSUIS_B1014 hypothetical protein YP_001832081.1 PFAM: histone deacetylase superfamily; KEGG: xau:Xaut_1155 histone deacetylase superfamily YP_001832082.1 PFAM: metallophosphoesterase; KEGG: mlo:mll3894 hypothetical protein YP_001832084.1 KEGG: mex:Mext_2900 hypothetical protein YP_001832085.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: afw:Anae109_2819 quinone oxidoreductase putative YhdH/YhfP YP_001832086.1 KEGG: mlo:mlr7750 alginate lyase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_001832087.1 PFAM: helix-turn-helix HxlR type; KEGG: gox:GOX2595 hypothetical protein YP_001832088.1 PFAM: beta-lactamase domain protein; KEGG: mex:Mext_2901 beta-lactamase domain protein YP_001832089.1 PFAM: regulatory protein ArsR; KEGG: bja:bll5291 transcriptional regulatory protein YP_001832090.1 PFAM: Chloride channel core; KEGG: bra:BRADO3095 putative H(+)/Cl(-) exchange transporter YP_001832091.1 PFAM: phosphoribosyltransferase; KEGG: mes:Meso_3530 phosphoribosyltransferase YP_001832092.1 KEGG: mva:Mvan_1399 hypothetical protein YP_001832093.1 PFAM: protein of unknown function DUF72; KEGG: ret:RHE_CH00317 hypothetical protein YP_001832094.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gdi:GDI0232 flavin oxidoreductase YP_001832095.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B1606 transcriptional regulator, TetR family YP_001832096.1 KEGG: xau:Xaut_3567 hypothetical protein YP_001832097.1 KEGG: xau:Xaut_0417 hypothetical protein YP_001832098.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA1823 TonB dependent receptor YP_001832099.1 KEGG: rpd:RPD_0348 UspA YP_001832100.1 KEGG: bra:BRADO6018 conserved hypothetical protein; putative signal peptide YP_001832101.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cak:Caul_4334 transcriptional regulator, LysR family YP_001832102.1 PFAM: Pyrrolo-quinoline quinone; KEGG: dge:Dgeo_1149 pyrrolo-quinoline quinone YP_001832103.1 PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A3477 major facilitator superfamily MFS_1 YP_001832104.1 PFAM: alpha/beta hydrolase fold; KEGG: bvi:Bcep1808_4587 alpha/beta hydrolase fold YP_001832105.1 PFAM: MaoC domain protein dehydratase; KEGG: bja:blr0424 similar to monoamine oxidase regulatory protein YP_001832106.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: mlo:mlr6940 catalase/peroxidase YP_001832107.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: azc:AZC_4108 two component transcriptional regulator YP_001832108.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: azc:AZC_4107 multi-sensor hybrid histidine kinase YP_001832109.1 TIGRFAM: urea ABC transporter, urea binding protein; KEGG: azc:AZC_4106 amide-UreA binding protein precursor YP_001832110.1 TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: azc:AZC_4105 putative branched-chain amino acid transport system permease protein YP_001832111.1 TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: azc:AZC_4104 ABC transporter permease protein YP_001832112.1 TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: azc:AZC_4103 ABC transporter ATP-binding protein YP_001832113.1 KEGG: azc:AZC_4102 putative ABC transporter ATP-binding component; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase YP_001832114.1 PFAM: Acetamidase/Formamidase; KEGG: rpd:RPD_3859 formamidase YP_001832115.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: bra:BRADO6891 putative formamidase regulatory protein FmdB YP_001832116.1 KEGG: mfa:Mfla_0157 hypothetical protein YP_001832117.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sco:SCO6555 LysR-family transcriptional regulator YP_001832118.1 KEGG: bld:BLi03580 OxdC; TIGRFAM: bicupin, oxalate decarboxylase family; PFAM: Cupin domain protein; Cupin 2 conserved barrel domain protein YP_001832119.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2314 MFS permease YP_001832120.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_1079 transcriptional regulator YP_001832121.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: bja:bll3138 formate dehydrogenase subunit gamma YP_001832122.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: bja:bll3137 NADH dehydrogenase I chain F YP_001832123.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mex:Mext_4406 formate dehydrogenase, alpha subunit YP_001832124.1 KEGG: mex:Mext_4407 hypothetical protein YP_001832125.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; KEGG: bmu:Bmul_5398 molybdenum cofactor synthesis domain protein YP_001832126.1 KEGG: gdi:GDI0167 putative molybdopterin-guanine dinucleotide biosynthesis protein A YP_001832127.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: gdi:GDI1145 putative formate dehydrogenase accessory protein YP_001832128.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: noc:Noc_2767 glyoxalase/bleomycin resistance protein/dioxygenase YP_001832129.1 PFAM: protein of unknown function UPF0061; KEGG: rpe:RPE_3277 protein of unknown function UPF0061 YP_001832130.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: mex:Mext_0946 dihydrouridine synthase DuS YP_001832131.1 PFAM: protein of unknown function DUF815; KEGG: mlo:mlr1073 hypothetical protein YP_001832132.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: xau:Xaut_4308 preprotein translocase, YajC subunit YP_001832133.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: mex:Mext_4228 protein-export membrane protein SecD YP_001832134.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: bbt:BBta_4405 preprotein translocase subunit SecF YP_001832135.1 PFAM: protein of unknown function DUF498; KEGG: mex:Mext_4226 protein of unknown function DUF498 YP_001832136.1 KEGG: mex:Mext_4225 squalene/phytoene synthase YP_001832137.1 KEGG: rfr:Rfer_3382 hypothetical protein YP_001832138.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme YP_001832139.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001832140.1 KEGG: mex:Mext_2327 hypothetical protein YP_001832141.1 PFAM: peptidase M16 domain protein; KEGG: azc:AZC_4242 putative protease precursor YP_001832142.1 PFAM: peptidase M16 domain protein; KEGG: bbt:BBta_1712 putative Zn-dependent protease YP_001832143.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: nwi:Nwi_2548 DNA mismatch repair protein YP_001832144.1 KEGG: oan:Oant_3962 hypothetical protein YP_001832145.1 KEGG: btr:Btr_0639 hypothetical protein; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase YP_001832146.1 KEGG: dre:573024 zgc:56152 YP_001832147.1 PFAM: helix-turn-helix HxlR type; transcriptional regulator PadR family protein; KEGG: bxe:Bxe_A1731 putative transcriptional regulator YP_001832148.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A1732 putative short-chain dehydrogenase/reductase SDR YP_001832149.1 PFAM: arsenate reductase and related; KEGG: cak:Caul_2487 arsenate reductase and related YP_001832150.1 PFAM: heat shock protein Hsp20; KEGG: mes:Meso_2276 heat shock protein HSP20 YP_001832151.1 KEGG: mex:Mext_1528 hypothetical protein YP_001832152.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: mmr:Mmar10_2449 3'(2'),5'-bisphosphate nucleotidase YP_001832153.1 PFAM: conserved hypothetical protein; KEGG: rpe:RPE_4288 uncharacterised conserved protein UCP033924 YP_001832154.1 KEGG: azc:AZC_1080 hypothetical protein YP_001832156.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: bja:blr5680 ribulose-phosphate 3-epimerase YP_001832157.1 KEGG: mlo:mll6729 hypothetical protein YP_001832158.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH03424 short chain dehydrogenase YP_001832159.1 PFAM: FAD linked oxidase domain protein; KEGG: bbt:BBta_7179 hypothetical protein YP_001832160.1 KEGG: ret:RHE_CH03426 hypothetical protein YP_001832161.1 PFAM: UbiA prenyltransferase; KEGG: ret:RHE_CH03427 putative integral membrane prenyltransferase protein YP_001832162.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: rru:Rru_A3564 histidinol-phosphate phosphatase YP_001832163.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: pla:Plav_1895 RfaE bifunctional protein YP_001832164.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: xau:Xaut_3549 mannose-6-phosphate isomerase YP_001832165.1 PFAM: polysaccharide export protein; KEGG: bra:BRADO2217 putative capsule polysaccharide export outer membrane protein precursor YP_001832166.1 TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bra:BRADO2232 putative UDP-glucose lipid carrier transferase; putative membrane protein YP_001832168.1 PFAM: class II aldolase/adducin family protein; KEGG: mex:Mext_4772 L-fuculose-phosphate aldolase YP_001832169.1 Catalyzes the deamination of dCTP to form dUTP YP_001832170.1 KEGG: xau:Xaut_0471 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001832171.1 PFAM: ApaG domain protein; KEGG: bja:bll1101 ApaG YP_001832172.1 TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mex:Mext_0369 acetylornithine deacetylase (ArgE) YP_001832173.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001832174.1 KEGG: rpc:RPC_0822 hypothetical protein YP_001832175.1 KEGG: rpc:RPC_0821 transcriptional modulator of MazE/toxin, MazF YP_001832176.1 KEGG: azc:AZC_0865 hypothetical protein YP_001832177.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: mex:Mext_2695 tRNA pseudouridine synthase B YP_001832178.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001832179.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001832180.1 PFAM: protein of unknown function DUF448; KEGG: rpa:RPA0437 hypothetical protein YP_001832181.1 KEGG: azc:AZC_0018 transcription termination factor; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH type 1 domain protein; NusA domain protein; SMART: KH domain protein YP_001832182.1 PFAM: protein of unknown function DUF150; KEGG: xau:Xaut_0296 protein of unknown function DUF150 YP_001832183.1 PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: rpb:RPB_0585 nitrogen-fixing NifU-like YP_001832184.1 PFAM: peptidase M22 glycoprotease; KEGG: azc:AZC_4704 glycoprotease YP_001832185.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll0798 putative acetyltransferase YP_001832186.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bpt:Bpet2481 bacterioferritin comigratory protein YP_001832187.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001832188.1 PFAM: PhoH family protein; KEGG: mex:Mext_3205 PhoH family protein YP_001832189.1 PFAM: protein of unknown function UPF0054; KEGG: mag:amb4465 predicted metal-dependent hydrolase YP_001832190.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: mex:Mext_3207 CBS domain containing protein YP_001832191.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mex:Mext_3208 apolipoprotein N-acyltransferase YP_001832193.1 PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_0013 putative transcriptional regulator YP_001832194.1 PFAM: S-adenosylmethionine synthetase; KEGG: azc:AZC_0014 S-adenosylmethionine synthetase YP_001832195.1 PFAM: putative methyltransferase; KEGG: mex:Mext_3307 tRNA (guanine-N(7)-)-methyltransferase YP_001832196.1 PFAM: glycosyl transferase family 2; KEGG: xau:Xaut_2382 glycosyl transferase family 2 YP_001832197.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_001832198.1 PFAM: phospholipase/Carboxylesterase; KEGG: dge:Dgeo_0941 phospholipase/carboxylesterase YP_001832199.1 PFAM: protein of unknown function DUF952; KEGG: mex:Mext_2107 protein of unknown function DUF952 YP_001832200.1 PFAM: dihydroorotate dehydrogenase; KEGG: rpc:RPC_0755 dihydroorotate dehydrogenase 2 YP_001832201.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: xau:Xaut_1467 MATE efflux family protein YP_001832202.1 KEGG: rpd:RPD_0792 hypothetical protein YP_001832203.1 PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: azc:AZC_0393 putative ATP dependent DNA ligase YP_001832204.1 KEGG: xau:Xaut_1471 putative mRNA 3-end processing factor YP_001832206.1 KEGG: gdi:GDI1327 hypothetical protein YP_001832207.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: rpe:RPE_0727 methyltransferase type 11 YP_001832208.1 PFAM: ABC-1 domain protein; KEGG: xau:Xaut_1153 ABC-1 domain protein YP_001832209.1 KEGG: gbe:GbCGDNIH1_1436 hypothetical cytosolic protein YP_001832210.1 PFAM: homospermidine synthase; KEGG: xau:Xaut_2138 homospermidine synthase YP_001832211.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr7760 hypothetical protein YP_001832212.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: azc:AZC_0333 ornithine decarboxylase YP_001832213.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_001832214.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mes:Meso_0956 GCN5-related N-acetyltransferase YP_001832215.1 PFAM: Creatininase; KEGG: mex:Mext_2133 creatininase YP_001832217.1 PFAM: low temperature requirement A; KEGG: oan:Oant_2126 low temperature requirement A YP_001832218.1 KEGG: pap:PSPA7_2235 hypothetical protein YP_001832219.1 KEGG: bxe:Bxe_B1808 hypothetical protein YP_001832220.1 PFAM: NMT1/THI5 like domain protein; KEGG: bbt:BBta_7482 putative ABC transporter, periplasmic binding protein YP_001832221.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oan:Oant_3870 ABC transporter related YP_001832222.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_0333 binding-protein-dependent transport systems inner membrane component YP_001832223.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: azc:AZC_4207 putative glycerate dehydrogenase YP_001832224.1 KEGG: mex:Mext_4353 hypothetical protein YP_001832225.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: azc:AZC_0511 regulatory protein YP_001832226.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpa:RPA0814 hypothetical protein YP_001832227.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001832228.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001832229.1 KEGG: ccr:CC_1593 potassium-transporting ATPase, C subunit; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit YP_001832230.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; KEGG: cak:Caul_2695 osmosensitive K+ channel signal transduction histidine kinase YP_001832231.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cak:Caul_2694 two component transcriptional regulator, winged helix family YP_001832232.1 KEGG: xom:XOO_3233 hypothetical protein YP_001832233.1 TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; transferase hexapeptide repeat containing protein; KEGG: mex:Mext_3972 non-ribosomal peptide synthetase YP_001832234.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO2151 enoyl-(acyl carrier protein) reductase YP_001832235.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_0228 RNA polymerase sigma factor, sigma-70 family YP_001832236.1 KEGG: bbr:BB1303 hypothetical protein YP_001832237.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: bra:BRADO2148 putative heat shock protein DnaJ YP_001832238.1 KEGG: mex:Mext_4294 hypothetical protein YP_001832239.1 KEGG: bcs:BCAN_A0421 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_001832242.1 PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: mex:Mext_1946 8-amino-7-oxononanoate synthase YP_001832244.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mex:Mext_1947 beta-ketoacyl synthase YP_001832246.1 PFAM: Glutathione S-transferase domain; KEGG: bra:BRADO1844 putative glutathione S-transferase YP_001832247.1 KEGG: gsu:GSU0709 hypothetical protein YP_001832248.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001832249.1 PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: ret:RHE_PF00140 hypothetical protein YP_001832250.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: aba:Acid345_4416 uracil-DNA glycosylase superfamily YP_001832251.1 KEGG: nha:Nham_3496 hypothetical protein YP_001832252.1 PFAM: O-methyltransferase family 2; regulatory protein ArsR; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: azc:AZC_4339 regulatory protein YP_001832253.1 KEGG: xau:Xaut_2831 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_001832254.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_001832255.1 PFAM: protein of unknown function UPF0047; KEGG: bmu:Bmul_5223 protein of unknown function UPF0047 YP_001832256.1 KEGG: hau:Haur_0109 hypothetical protein YP_001832257.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reu:Reut_B4504 short-chain dehydrogenase/reductase SDR YP_001832258.1 KEGG: xau:Xaut_0133 hypothetical protein YP_001832259.1 KEGG: xau:Xaut_2099 hypothetical protein YP_001832260.1 KEGG: azo:azo2957 hypothetical protein YP_001832261.1 PFAM: molybdopterin binding domain; KEGG: mex:Mext_0374 molybdopterin binding domain YP_001832262.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively YP_001832263.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: mex:Mext_3036 RNA polymerase-binding protein DksA YP_001832264.1 Converts isocitrate to alpha ketoglutarate YP_001832265.1 PFAM: metallophosphoesterase; KEGG: nha:Nham_3024 metallophosphoesterase YP_001832266.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bra:BRADO7056 putative exopolysaccharide biosynthesis protein YP_001832267.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: xau:Xaut_3105 methyltransferase type 11 YP_001832268.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: zmo:ZMO0113 para-aminobenzoate synthase component I YP_001832269.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mex:Mext_3906 glutamine amidotransferase of anthranilate synthase YP_001832270.1 PFAM: aminotransferase class IV; KEGG: mex:Mext_3905 aminotransferase class IV YP_001832271.1 PFAM: phosphoribosyltransferase; KEGG: nwi:Nwi_0385 phosphoribosyltransferase YP_001832272.1 KEGG: nha:Nham_1247 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_001832273.1 KEGG: rpa:RPA4156 3-oxoadipate CoA-transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_001832275.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nmu:Nmul_A1400 zinc-containing alcohol dehydrogenase superfamily YP_001832276.1 KEGG: azc:AZC_0594 HupT protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001832277.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: xau:Xaut_0343 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_001832278.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: azc:AZC_0596 HupV protein YP_001832279.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: azc:AZC_0597 hydrogenase maturation protein YP_001832280.1 KEGG: net:Neut_1100 hypothetical protein YP_001832281.1 KEGG: azc:AZC_0598 Ni-Fe hydrogenase small subunit protein; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein YP_001832282.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: azc:AZC_0599 hydrogenase large subunit protein YP_001832283.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: azc:AZC_0600 HupC protein YP_001832284.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: azc:AZC_0601 hydrogen uptake protein YP_001832285.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: xau:Xaut_2177 hydrogenase assembly chaperone HypC/HupF YP_001832286.1 PFAM: hydrogenase-1 expression HyaE; KEGG: azc:AZC_0603 hydrogenase expression/formation protein YP_001832287.1 PFAM: HupH hydrogenase expression protein; KEGG: xau:Xaut_2179 HupH hydrogenase expression protein YP_001832288.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: xau:Xaut_2180 rubredoxin-type Fe(Cys)4 protein YP_001832289.1 KEGG: xau:Xaut_2181 putative hydrogenase expression/formation protein HupK YP_001832290.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: xau:Xaut_2182 hydrogenase nickel insertion protein HypA YP_001832291.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: azc:AZC_0608 hydrogenase accessory protein YP_001832292.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: xau:Xaut_2184 two component, sigma54 specific, transcriptional regulator, fis family YP_001832293.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: azc:AZC_0610 hydrogenase expression/formation protein YP_001832294.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: azc:AZC_0611 hydrogenase formation protein YP_001832295.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: azc:AZC_0612 hydrogenase expression/formation protein YP_001832296.1 PFAM: phosphoesterase; KEGG: aba:Acid345_1521 phosphoesterase YP_001832297.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: zmo:ZMO1807 TonB-dependent receptor YP_001832298.1 KEGG: nha:Nham_1869 hypothetical protein YP_001832299.1 PFAM: acriflavin resistance protein; KEGG: xau:Xaut_1597 acriflavin resistance protein YP_001832300.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xau:Xaut_1596 efflux transporter, RND family, MFP subunit YP_001832301.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mca:MCA0263 fumarylacetoacetate hydrolase family protein YP_001832302.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: oan:Oant_0542 exodeoxyribonuclease VII, small subunit YP_001832303.1 KEGG: cak:Caul_5093 monooxygenase, NtaA/SnaA/SoxA family YP_001832304.1 KEGG: mex:Mext_4307 hypothetical protein YP_001832305.1 KEGG: ajs:Ajs_4230 metal dependent phosphohydrolase, HD region YP_001832306.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mca:MCA0262 ATPase, AAA family YP_001832307.1 KEGG: pla:Plav_0747 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_001832308.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: gur:Gura_0984 major facilitator superfamily MFS_1 YP_001832309.1 PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; KEGG: rle:pRL110232 putative transmembrane cyclic nucleotide-binding ion channel YP_001832310.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: rpc:RPC_0206 heme exporter protein CcmB YP_001832311.1 KEGG: rpa:RPA0203 heme exporter protein A (heme ABC transporter ATP-binding protein), cytochrome c biogenesis; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase YP_001832312.1 Catalyzes the conversion of citrate to isocitrate YP_001832313.1 KEGG: bbt:BBta_0340 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_001832314.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX2077 ferric siderophore receptor YP_001832316.1 KEGG: bpm:BURPS1710b_A1082 200 kDa antigen p200, putative YP_001832317.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: rpc:RPC_0237 aspartate-semialdehyde dehydrogenase YP_001832318.1 PFAM: carbonic anhydrase; KEGG: azc:AZC_2766 carbonic anhydrase YP_001832319.1 PFAM: HpcH/HpaI aldolase; KEGG: azc:AZC_3736 citrate lyase beta subunit YP_001832320.1 KEGG: rpd:RPD_0468 hypothetical protein YP_001832321.1 PFAM: HemY domain protein; KEGG: mex:Mext_0735 HemY domain protein YP_001832322.1 KEGG: rru:Rru_A2704 hypothetical protein YP_001832323.1 KEGG: nwi:Nwi_1075 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_001832324.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: mex:Mext_4375 peptide chain release factor 3 YP_001832325.1 KEGG: mlo:mll1046 cytochrome c oxidase subunit I YP_001832326.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: shn:Shewana3_3225 peptidase S10, serine carboxypeptidase YP_001832327.1 PFAM: OmpA/MotB domain protein; transport-associated; KEGG: bbt:BBta_0753 putative outer membrane protein with OmpA domain YP_001832328.1 KEGG: bra:BRADO2721 hypothetical protein; putative membrane protein; putative TolA family protein YP_001832329.1 PFAM: aldo/keto reductase; KEGG: sil:SPOA0345 oxidoreductase, aldo/keto reductase family YP_001832330.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sil:SPOA0344 transcriptional regulator, LysR family YP_001832332.1 PFAM: Pyrrolo-quinoline quinone; KEGG: dge:Dgeo_1149 pyrrolo-quinoline quinone YP_001832333.1 PFAM: Patatin; KEGG: rru:Rru_A1038 patatin YP_001832334.1 PFAM: protein of unknown function DUF378; KEGG: rsq:Rsph17025_0607 protein of unknown function DUF378 YP_001832335.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_001832336.1 PFAM: RDD domain containing protein; KEGG: sme:SMc01765 hypothetical protein YP_001832337.1 PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: mex:Mext_0840 peptidase M15D VanX D-ala-D-ala dipeptidase YP_001832338.1 KEGG: rrs:RoseRS_3992 hypothetical protein YP_001832339.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001832340.1 PFAM: TENA/THI-4 domain protein; KEGG: gdi:GDI2186 thiaminase-2 protein YP_001832341.1 PFAM: Glutathione S-transferase domain; KEGG: syn:slr0605 putative glutathione S-transferase YP_001832342.1 KEGG: rpc:RPC_3310 hypothetical protein YP_001832343.1 PFAM: response regulator receiver; KEGG: mex:Mext_0966 response regulator receiver YP_001832344.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rpa:RPA3132 response regulator PleD YP_001832345.1 PFAM: beta-lactamase; KEGG: bra:BRADO1130 putative penicillin binding protein YP_001832346.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001832347.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bja:blr4949 glutamine synthetase I YP_001832348.1 PFAM: nitrogen regulatory protein P-II; KEGG: mlo:mll0345 nitrogen regulatory protein P-II YP_001832349.1 KEGG: sus:Acid_7934 hypothetical protein YP_001832350.1 PFAM: Rhodanese domain protein; KEGG: xau:Xaut_4678 rhodanese domain protein YP_001832351.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xau:Xaut_4677 pyridoxal-5'-phosphate-dependent protein beta subunit YP_001832352.1 PFAM: Cold-shock protein DNA-binding; KEGG: noc:Noc_2438 sigma 54 modulation protein/ribosomal protein S30EA YP_001832353.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMc01175 putative oxidoreductase protein YP_001832354.1 KEGG: xau:Xaut_3391 hypothetical protein YP_001832355.1 KEGG: fre:Franean1_4104 putative monooxygenase, NtaA/SnaA/SoxA family YP_001832356.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001832357.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: rpa:RPA2726 putative riboflavin-specific deaminase / reductase YP_001832358.1 TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: rpb:RPB_2637 riboflavin synthase subunit alpha YP_001832359.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: cak:Caul_3138 Na+/H+ antiporter YP_001832360.1 PFAM: Amylo-alpha-16-glucosidase; KEGG: rpc:RPC_3211 amylo-alpha-1,6-glucosidase YP_001832361.1 PFAM: glycosyl transferase group 1; KEGG: bja:bll5217 probable glycosyl transferase YP_001832362.1 KEGG: bbt:BBta_1839 cell division protein FtsH (ATP-dependent zinc-metallo protease); TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001832363.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: mag:amb1849 probable cysteine desulfurase 1 YP_001832364.1 KEGG: chu:CHU_1814 hypothetical protein YP_001832365.1 PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A3517 major facilitator superfamily MFS_1 YP_001832366.1 PFAM: regulatory protein MarR; KEGG: rru:Rru_A3519 transcriptional regulator, MarR family YP_001832368.1 KEGG: mag:amb2048 hypothetical protein YP_001832369.1 KEGG: azc:AZC_2385 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_001832370.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: cak:Caul_4668 sodium/hydrogen exchanger YP_001832371.1 PFAM: NnrUfamily protein; KEGG: gdi:GDI0566 putative nitrate reductase protein YP_001832372.1 KEGG: nha:Nham_1076 hypothetical protein YP_001832373.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_001832374.1 KEGG: cak:Caul_1252 hypothetical protein YP_001832376.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xau:Xaut_1621 quinone oxidoreductase putative PIG3 YP_001832377.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: prw:PsycPRwf_0720 transcriptional regulator, AraC family YP_001832378.1 PFAM: isochorismatase hydrolase; KEGG: pfo:Pfl_5042 isochorismatase hydrolase YP_001832379.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_2844 TPR repeat YP_001832382.1 PFAM: Domain of unknown function DUF1863; KEGG: cbf:CLI_1847 hypothetical protein YP_001832383.1 PFAM: alpha/beta hydrolase fold; KEGG: pnu:Pnuc_1320 alpha/beta hydrolase fold YP_001832384.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: xau:Xaut_2944 protein of unknown function DUF306 MetA and HslJ YP_001832386.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001832387.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_3768 putative transcriptional regulator, TetR family YP_001832388.1 KEGG: mex:Mext_3769 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_001832389.1 PFAM: Protein of unknown function DUF1790; KEGG: mex:Mext_3770 protein of unknown function DUF1790 YP_001832390.1 PFAM: protein of unknown function DUF45; KEGG: mex:Mext_0593 protein of unknown function DUF45 YP_001832391.1 KEGG: mex:Mext_4284 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases YP_001832392.1 PFAM: K potassium transporter; KEGG: bja:blr3803 potassium uptake protein YP_001832393.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: bbt:BBta_7642 DNA mismatch repair protein YP_001832394.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: gdi:GDI2957 putative sulfate transporter YP_001832395.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: gfo:GFO_1743 carboxymuconolactone decarboxylase family protein-possibly antioxidant defence related YP_001832396.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001832397.1 PFAM: response regulator receiver; KEGG: ccr:CC_3015 response regulator YP_001832398.1 KEGG: gdi:GDI0705 hypothetical protein YP_001832399.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001832400.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_001832401.1 PFAM: Catalase domain protein; KEGG: mex:Mext_0230 catalase domain protein YP_001832402.1 PFAM: cytochrome B561; KEGG: mex:Mext_0231 cytochrome b561 YP_001832403.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001832404.1 PFAM: SWIB/MDM2 domain protein; KEGG: mex:Mext_3127 SWIB/MDM2 domain protein YP_001832405.1 PFAM: aldo/keto reductase; KEGG: afw:Anae109_1681 aldo/keto reductase YP_001832406.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: atc:AGR_pAT_564 short chain dehydrogenase YP_001832407.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH00344 probable transcriptional regulator protein, LysR family YP_001832408.1 PFAM: Rhodanese domain protein; regulatory protein ArsR; KEGG: bps:BPSS2118 ArsR family transcriptional regulator YP_001832409.1 KEGG: acr:Acry_3467 beta-lactamase domain protein YP_001832410.1 KEGG: mes:Meso_2278 hypothetical protein YP_001832411.1 KEGG: bur:Bcep18194_B0205 hypothetical protein YP_001832412.1 PFAM: thioesterase superfamily protein; KEGG: xau:Xaut_2128 thioesterase superfamily protein YP_001832413.1 PFAM: protein of unknown function DUF255; KEGG: xau:Xaut_1832 protein of unknown function DUF255 YP_001832414.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001832415.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001832416.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: xau:Xaut_1835 glucose inhibited division protein YP_001832417.1 KEGG: xau:Xaut_1732 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region YP_001832418.1 PFAM: protein of unknown function DUF74; KEGG: ter:Tery_3795 protein of unknown function DUF74 YP_001832419.1 KEGG: vei:Veis_4393 hypothetical protein YP_001832420.1 Essential for recycling GMP and indirectly, cGMP YP_001832421.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: xau:Xaut_3135 domain of unknown function DUF1732 YP_001832422.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: xau:Xaut_2324 phosphoribosylglycinamide formyltransferase YP_001832423.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001832424.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_3121 transcriptional regulator YP_001832426.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rpa:RPA3050 CDP-alcohol phosphatidyltransferase YP_001832427.1 PFAM: protein of unknown function UPF0118; KEGG: mes:Meso_1964 protein of unknown function UPF0118 YP_001832428.1 PFAM: Chromosomal replication initiator DnaA; KEGG: mex:Mext_2066 chromosomal replication initiator DnaA YP_001832429.1 KEGG: ccr:CC_1835 hypothetical protein YP_001832430.1 PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A0896 hypothetical protein YP_001832431.1 PFAM: protein of unknown function DUF938; KEGG: mca:MCA0911 hypothetical protein YP_001832432.1 PFAM: Amidase; KEGG: cak:Caul_3620 amidase YP_001832433.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gdi:GDI0323 putative glyoxalase YP_001832434.1 KEGG: gdi:GDI0324 hypothetical protein YP_001832435.1 PFAM: cytochrome B561; KEGG: bpt:Bpet1668 cytochrome b561 family protein YP_001832436.1 PFAM: protein of unknown function DUF540; KEGG: mex:Mext_0573 protein of unknown function DUF540 YP_001832437.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: bbt:BBta_0224 hypothetical protein YP_001832439.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bpt:Bpet3236 2-haloalkanoic acid dehalogenase YP_001832440.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: rpd:RPD_3620 CrcB protein YP_001832441.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bja:bll5366 putative ribosomal large subunit pseudouridine synthase C YP_001832442.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_0280 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_001832443.1 PFAM: ATP12 ATPase; KEGG: rpb:RPB_2337 ATP12 ATPase YP_001832444.1 PFAM: glutathione peroxidase; KEGG: spe:Spro_2152 glutathione peroxidase YP_001832445.1 PFAM: GCN5-related N-acetyltransferase; KEGG: oan:Oant_2212 GCN5-related N-acetyltransferase YP_001832446.1 PFAM: carboxyl transferase; KEGG: ret:RHE_CH02232 propionyl-CoA carboxylase beta chain protein YP_001832447.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: azc:AZC_1774 propionyl-coenzyme A carboxylase alpha polypeptide YP_001832448.1 KEGG: afm:AFUA_5G00480 exoinulinase InuD; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32 YP_001832449.1 catalyzes branch migration in Holliday junction intermediates YP_001832450.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001832451.1 PFAM: acylphosphatase; KEGG: nha:Nham_2164 acylphosphatase YP_001832452.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:blr2811 hypothetical protein YP_001832454.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pla:Plav_2581 RNA methyltransferase, TrmH family, group 1 YP_001832455.1 KEGG: mex:Mext_3217 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_001832456.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: xau:Xaut_1843 riboflavin biosynthesis protein RibF YP_001832457.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nwi:Nwi_2539 HAD-superfamily subfamily IIA hydrolase YP_001832458.1 KEGG: rpb:RPB_4107 hypothetical protein YP_001832459.1 PFAM: Rhodanese domain protein; KEGG: bra:BRADO3192 putative sulfurtransferase (rhodanese) YP_001832460.1 KEGG: scl:sce6240 hypothetical protein YP_001832461.1 KEGG: amr:AM1_2247 hypothetical protein YP_001832462.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: eba:ebA6753 hypothetical protein YP_001832463.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azc:AZC_0877 general substrate transporter YP_001832464.1 PFAM: protein of unknown function DUF461; KEGG: xau:Xaut_0418 protein of unknown function DUF461 YP_001832465.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: azc:AZC_0878 RNA methyltransferase YP_001832466.1 PFAM: GAF domain protein; HWE histidine kinase; KEGG: mex:Mext_3300 PAS sensor protein YP_001832467.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: mex:Mext_1096 acetyl-CoA carboxylase, biotin carboxylase YP_001832468.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: mex:Mext_1095 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001832470.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: azc:AZC_0881 putative translocation complex protein YP_001832471.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: mex:Mext_3997 transcription termination/antitermination factor NusG YP_001832472.1 binds directly to 23S ribosomal RNA YP_001832473.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001832474.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001832475.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001832476.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001832477.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001832478.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001832479.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001832480.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001832481.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001832482.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001832483.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001832484.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001832485.1 PFAM: Ribosomal protein L25/L23; KEGG: rpd:RPD_3182 50S ribosomal protein L23 YP_001832486.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001832487.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001832488.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001832489.1 KEGG: bja:bll5394 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein YP_001832490.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001832491.1 PFAM: ribosomal protein L29; KEGG: mex:Mext_2170 ribosomal protein L29 YP_001832492.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001832493.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001832494.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001832495.1 PFAM: ribosomal protein L5; KEGG: xau:Xaut_4786 ribosomal protein L5 YP_001832496.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001832497.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001832498.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001832499.1 binds 5S rRNA along with protein L5 and L25 YP_001832500.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001832501.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001832502.1 late assembly protein YP_001832503.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: azc:AZC_2534 preprotein translocase SecY subunit YP_001832504.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001832505.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mlo:mlr1674 hypothetical protein YP_001832506.1 KEGG: bcs:BCAN_A0053 hypothetical protein YP_001832507.1 PFAM: ribosomal protein L13; KEGG: azc:AZC_2190 ribosomal protein L13 YP_001832508.1 forms a direct contact with the tRNA during translation YP_001832509.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_001832510.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mlo:mlr0937 poly-beta-hydroxybutyrate synthase YP_001832512.1 PFAM: phosphoribosylglycinamide synthetase; KEGG: rpe:RPE_4612 phosphoribosylamine--glycine ligase YP_001832513.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: xau:Xaut_2101 activator of HSP90 ATPase 1 family protein YP_001832514.1 KEGG: xau:Xaut_1139 hypothetical protein YP_001832515.1 PFAM: isochorismatase hydrolase; KEGG: hau:Haur_3125 isochorismatase hydrolase YP_001832516.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001832517.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_001832518.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: xau:Xaut_3138 ribonuclease D YP_001832519.1 PFAM: Invasion associated locus B family protein; KEGG: mmw:Mmwyl1_0483 invasion associated locus B family protein YP_001832521.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bja:bll7313 RND efflux membrane fusion protein YP_001832522.1 PFAM: acriflavin resistance protein; KEGG: bja:bll7312 AcrB/AcrD/AcrF family protein YP_001832523.1 PFAM: YCII-related; KEGG: shm:Shewmr7_2107 YCII-related YP_001832524.1 PFAM: Citrate transporter; KEGG: azc:AZC_1305 putative H+/gluconate symporter YP_001832525.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mex:Mext_4005 aspartyl-tRNA synthetase YP_001832527.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: mes:Meso_1193 putative phage repressor YP_001832528.1 PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_4754 secretion protein HlyD family protein YP_001832529.1 PFAM: protein of unknown function DUF1656; KEGG: pfl:PFL_4603 hypothetical protein YP_001832530.1 KEGG: mex:Mext_4756 fusaric acid resistance protein conserved region YP_001832531.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpc:RPC_2496 exodeoxyribonuclease III (xth) YP_001832532.1 KEGG: bbt:BBta_7186 putative membrane protein of unknown function YP_001832533.1 KEGG: bbt:BBta_7186 putative membrane protein of unknown function YP_001832534.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mex:Mext_3901 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family YP_001832535.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rru:Rru_A3272 protein of unknown function DUF6, transmembrane YP_001832536.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: mlo:mll7814 quinone reductase YP_001832537.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mlo:mlr7815 transcriptional regulator YP_001832538.1 KEGG: azc:AZC_1710 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_001832539.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001832540.1 PFAM: ComEC/Rec2-related protein; KEGG: mex:Mext_4682 ComEC/Rec2-related protein YP_001832541.1 KEGG: bcs:BCAN_A1554 hypothetical protein YP_001832542.1 PFAM: glutamine amidotransferase class-I; KEGG: rru:Rru_A3512 glutamine amidotransferase YP_001832543.1 PFAM: Phosphoglycerate mutase; KEGG: ret:RHE_PF00323 putative phosphoglycerate mutase protein YP_001832544.1 PFAM: transcriptional regulator PadR family protein; KEGG: gdi:GDI0892 putative transcriptional regulator, PadR-like family YP_001832545.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: bmt:BSUIS_A1189 indole-3-glycerol phosphate synthase YP_001832546.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: mlo:mlr0616 molybdenum cofactor biosynthesis protein C YP_001832547.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: mex:Mext_4674 molybdenum cofactor synthesis domain protein YP_001832548.1 Represses a number of genes involved in the response to DNA damage YP_001832551.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ppd:Ppro_2287 cobyrinic acid a,c-diamide synthase YP_001832552.1 PFAM: RelA/SpoT domain protein; KEGG: ppd:Ppro_2286 RelA/SpoT domain protein YP_001832553.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ppr:PBPRA1334 hypothetical protein YP_001832554.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rpa:RPA1907 hypothetical protein YP_001832555.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ent:Ent638_2291 transcriptional regulator, LysR family YP_001832556.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_2144 major facilitator superfamily MFS_1 YP_001832558.1 KEGG: bxe:Bxe_B0588 hypothetical protein YP_001832559.1 PFAM: protein of unknown function DUF692; KEGG: bxe:Bxe_B0587 hypothetical protein YP_001832560.1 KEGG: bxe:Bxe_B0585 hypothetical protein YP_001832561.1 PFAM: DoxX family protein; KEGG: bxe:Bxe_B0584 hypothetical protein YP_001832562.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: nha:Nham_4645 sigma-24 (FecI-like) YP_001832563.1 KEGG: nha:Nham_4644 hypothetical protein YP_001832564.1 PFAM: beta-lactamase; KEGG: gbe:GbCGDNIH1_1173 beta-lactamase YP_001832565.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_1311 putative transcriptional regulator YP_001832566.1 KEGG: azc:AZC_1312 hypothetical protein YP_001832568.1 KEGG: bra:BRADO6401 hypothetical protein YP_001832569.1 KEGG: smd:Smed_5100 hypothetical protein YP_001832570.1 PFAM: RES domain protein; KEGG: mlo:mll9650 hypothetical protein YP_001832571.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: nwi:Nwi_2276 Fe-S oxidoreductase YP_001832572.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001832573.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: xau:Xaut_4377 glutamine amidotransferase of anthranilate synthase YP_001832574.1 KEGG: pde:Pden_1711 hypothetical protein YP_001832575.1 PFAM: Choloylglycine hydrolase; KEGG: oan:Oant_1703 penicillin amidase YP_001832576.1 KEGG: azc:AZC_2208 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like YP_001832577.1 KEGG: rpc:RPC_2468 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001832578.1 PFAM: triosephosphate isomerase; KEGG: nwi:Nwi_1835 triosephosphate isomerase YP_001832579.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: mex:Mext_4662 preprotein translocase, SecG subunit YP_001832580.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001832581.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2638 transcriptional regulator, LysR family YP_001832582.1 KEGG: bch:Bcen2424_5410 hypothetical protein YP_001832583.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr7057 putative oxidoreductase YP_001832584.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_CH02989 hypothetical protein YP_001832585.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc3334 probable transcription regulator protein YP_001832587.1 TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I; KEGG: bbt:BBta_4472 7-cyano-7-deazaguanine reductase YP_001832589.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_001832590.1 PFAM: regulatory protein TetR; KEGG: bbt:BBta_5351 putative transcriptional regulatory protein, TetR family YP_001832591.1 PFAM: Lytic transglycosylase catalytic; KEGG: rpc:RPC_2909 lytic transglycosylase, catalytic YP_001832592.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001832593.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: smd:Smed_1211 short-chain dehydrogenase/reductase SDR YP_001832594.1 KEGG: ret:RHE_CH02036 hypothetical protein YP_001832595.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH02037 short chain dehydrogenase YP_001832596.1 PFAM: protein of unknown function DUF336; KEGG: ret:RHE_CH02038 hypothetical protein YP_001832597.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_CH02039 probable transcriptional regulator protein, AraC family YP_001832598.1 PFAM: ThiJ/PfpI domain protein; KEGG: acr:Acry_0492 ThiJ/PfpI domain protein YP_001832599.1 PFAM: protein of unknown function DUF1348; KEGG: bmu:Bmul_5318 protein of unknown function DUF1348 YP_001832600.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH02414 probable epoxide hydrolase protein YP_001832601.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_3671 alcohol dehydrogenase, zinc-binding domain protein YP_001832602.1 PFAM: regulatory protein TetR; KEGG: bam:Bamb_3672 transcriptional regulator, TetR family YP_001832603.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: esa:ESA_01962 hypothetical protein YP_001832604.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: esa:ESA_01963 hypothetical protein YP_001832605.1 PFAM: Protein of unknown function DUF1778; KEGG: rpa:RPA3583 hypothetical protein YP_001832606.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpa:RPA1804 hypothetical protein YP_001832607.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpa:RPA1805 transcriptional regulator, LysR family YP_001832608.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: sus:Acid_6732 NAD-dependent epimerase/dehydratase YP_001832609.1 SMART: helix-turn-helix domain protein; KEGG: bmu:Bmul_1288 transcriptional regulator, XRE family YP_001832610.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: hch:HCH_03333 acyl carrier protein phosphodiesterase YP_001832611.1 KEGG: sal:Sala_0092 hypothetical protein YP_001832612.1 PFAM: helix-turn-helix HxlR type; KEGG: fre:Franean1_4812 transcriptional regulator, HxlR family YP_001832613.1 KEGG: cme:CMK267C hypothetical protein Pfam: DUF1640 HTH_10 PROSITE: GLY_RICH YP_001832614.1 KEGG: aor:AO090023000157 predicted protein Pfam: SGL YP_001832615.1 KEGG: ana:all0351 unknown protein YP_001832616.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: mva:Mvan_0928 carboxymuconolactone decarboxylase YP_001832617.1 PFAM: regulatory protein MarR; KEGG: mxa:MXAN_1760 transcriptional regulator, MarR family YP_001832618.1 PFAM: protein of unknown function DUF1044; KEGG: mex:Mext_1502 protein of unknown function DUF1044 YP_001832619.1 SMART: helix-turn-helix domain protein; KEGG: mex:Mext_1503 putative DNA-binding protein YP_001832620.1 KEGG: noc:Noc_1294 hypothetical protein YP_001832621.1 KEGG: xcb:XC_2635 hypothetical protein YP_001832622.1 KEGG: mag:amb1133 hypothetical protein YP_001832623.1 KEGG: bps:BPSL0770 hypothetical protein YP_001832624.1 PFAM: heat shock protein DnaJ domain protein; KEGG: xau:Xaut_2284 heat shock protein DnaJ domain protein YP_001832625.1 KEGG: bra:BRADO0256 putative alkaline phosphatase (PhoD); putative signal peptide YP_001832626.1 PFAM: Septum formation initiator; KEGG: mex:Mext_2785 septum formation initiator YP_001832627.1 KEGG: smd:Smed_1076 dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component YP_001832628.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_001832629.1 KEGG: ret:RHE_CH01935 dihydrolipoamide acetyltransferase protein; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_001832630.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001832631.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001832632.1 PFAM: RES domain protein; KEGG: reh:H16_B1263 hypothetical membrane protein YP_001832633.1 PFAM: conserved hypothetical protein; KEGG: acr:Acry_3436 hypothetical protein YP_001832634.1 PFAM: cyclase/dehydrase; KEGG: mex:Mext_2800 cyclase/dehydrase YP_001832635.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_0831 hypothetical protein YP_001832636.1 PFAM: CinA domain protein; KEGG: mmr:Mmar10_1438 CinA domain protein YP_001832637.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ava:Ava_3671 haloacid dehalogenase-like hydrolase YP_001832638.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: nha:Nham_1834 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001832639.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: rpe:RPE_2756 putative TIM-barrel protein, nifR3 family YP_001832640.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: xau:Xaut_4400 signal transduction histidine kinase, nitrogen specific, NtrB YP_001832641.1 KEGG: xau:Xaut_4399 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001832642.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: mex:Mext_2822 PAS sensor protein YP_001832643.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: mex:Mext_2823 sigma-54 factor interaction domain-containing protein YP_001832644.1 PFAM: Chromate transporter; KEGG: reu:Reut_A2355 chromate transporter YP_001832645.1 PFAM: Chromate transporter; KEGG: rso:RSc0980 probable transmembrane protein YP_001832646.1 PFAM: aminotransferase class IV; KEGG: mes:Meso_1614 aminotransferase, class IV YP_001832647.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: xau:Xaut_4393 RNA chaperone Hfq YP_001832648.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: mex:Mext_0068 GTP-binding protein HflX YP_001832649.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: xau:Xaut_4391 MazG family protein YP_001832650.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: xau:Xaut_0192 putative cold-shock DNA-binding domain protein YP_001832651.1 PFAM: Transketolase central region; KEGG: mlo:mlr9539 pyruvate dehydrogenase E1 component homolog YP_001832652.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: mlo:mll9538 transcriptional regulator homolog YP_001832653.1 KEGG: bpt:Bpet4207 ABC transporter ATP-binding protein; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_001832654.1 KEGG: azc:AZC_2264 metal-dependent hydrolase YP_001832655.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: mlo:mll0418 hypothetical protein YP_001832656.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); KEGG: bov:BOV_0962 methionyl-tRNA synthetase YP_001832657.1 KEGG: azc:AZC_2174 putative DNA polymerase III delta prime subunit YP_001832658.1 PFAM: thymidylate kinase; KEGG: xau:Xaut_4325 dTMP kinase YP_001832659.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: mex:Mext_2917 serine-type D-Ala-D-Ala carboxypeptidase YP_001832660.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: bcs:BCAN_A1007 rare lipoprotein A YP_001832661.1 KEGG: mca:MCA2292 hypothetical protein YP_001832663.1 KEGG: bvi:Bcep1808_7672 hypothetical protein YP_001832664.1 KEGG: bxe:Bxe_A0211 hypothetical protein YP_001832665.1 KEGG: bxe:Bxe_A0212 hypothetical protein YP_001832666.1 KEGG: bxe:Bxe_A0213 hypothetical protein YP_001832667.1 PFAM: thymidylate synthase; KEGG: bxe:Bxe_A0214 putative thymidylate synthase YP_001832668.1 KEGG: swi:Swit_4942 hypothetical protein YP_001832669.1 KEGG: swi:Swit_4943 hypothetical protein YP_001832670.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: rle:RL1232 putative AraC family transcriptional regulator YP_001832671.1 PFAM: ETC complex I subunit conserved region; KEGG: mex:Mext_3134 ETC complex I subunit conserved region YP_001832672.1 PFAM: protein of unknown function DUF192; KEGG: mex:Mext_3008 protein of unknown function DUF192 YP_001832673.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mex:Mext_3007 cold-shock protein DNA-binding YP_001832674.1 PFAM: Silent information regulator protein Sir2; KEGG: azc:AZC_1935 silent information regulator protein YP_001832675.1 thiamine-pyrophosphate requiring enzyme YP_001832676.1 KEGG: ftn:FTN_0894 GDSL-like lipolytic enzyme YP_001832677.1 KEGG: ftn:FTN_0894 GDSL-like lipolytic enzyme YP_001832678.1 PFAM: Carbamoyltransferase; KEGG: mag:amb0035 predicted carbamoyl transferase YP_001832679.1 KEGG: mag:amb0034 hypothetical protein YP_001832680.1 KEGG: mag:amb0033 hypothetical protein YP_001832681.1 PFAM: histidine biosynthesis protein; Indole-3-glycerol phosphate synthase; KEGG: xau:Xaut_4302 indole-3-glycerol-phosphate synthase YP_001832682.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: cak:Caul_2872 superoxide dismutase copper/zinc binding YP_001832683.1 KEGG: azc:AZC_2831 hypothetical protein YP_001832684.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: azc:AZC_1851 RecJ exonuclease YP_001832685.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_3329 ErfK/YbiS/YcfS/YnhG family protein YP_001832686.1 KEGG: rle:pRL70138 putative insertion sequence transposase-like protein YP_001832687.1 phosphorylates nucleosides or dinucleosides to make UMP or CMP as part of the pyrimidine salvage pathway YP_001832688.1 PFAM: Ppx/GppA phosphatase; KEGG: azc:AZC_3665 Ppx/GppA phosphatase YP_001832689.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001832690.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bja:bll3178 transcriptional regulatory protein YP_001832691.1 TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: bja:blr3179 probable alanine dehydrogenase oxidoreductase protein YP_001832692.1 PFAM: nitroreductase; KEGG: gbe:GbCGDNIH1_0027 nitroreductase family protein YP_001832693.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rru:Rru_A3400 thiosulphate-binding protein YP_001832694.1 PFAM: protein of unknown function DUF37; KEGG: azc:AZC_0945 unknown function protein YP_001832695.1 PFAM: MltA-interacting MipA family protein; KEGG: xau:Xaut_1031 MltA-interacting MipA family protein YP_001832696.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: rpc:RPC_3115 nitrogen-fixing NifU-like YP_001832697.1 PFAM: GTP cyclohydrolase I; KEGG: mex:Mext_2265 GTP cyclohydrolase I YP_001832700.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: mex:Mext_2264 phosphoribosyl-AMP cyclohydrolase YP_001832701.1 PFAM: CBS domain containing protein; KEGG: mex:Mext_2262 CBS domain containing protein YP_001832702.1 KEGG: rpe:RPE_2658 prepilin-type cleavage/methylation-like protein YP_001832703.1 KEGG: rpe:RPE_2659 prepilin-type cleavage/methylation-like protein YP_001832704.1 KEGG: rpe:RPE_2660 putative general secretion pathway protein H precursor YP_001832705.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rpe:RPE_2661 general secretion pathway protein G YP_001832706.1 PFAM: type II secretion system protein; KEGG: rpe:RPE_2662 type II secretion system protein YP_001832707.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: rpe:RPE_2663 type II secretion system protein E YP_001832708.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rpe:RPE_2669 general secretion pathway protein D YP_001832709.1 PFAM: peptidase A24A prepilin type IV; KEGG: rpe:RPE_2668 general secretion pathway protein O YP_001832710.1 KEGG: rpe:RPE_2667 hypothetical protein YP_001832711.1 PFAM: Fimbrial assembly family protein; KEGG: rpe:RPE_2666 fimbrial assembly family protein YP_001832712.1 KEGG: rpe:RPE_2665 hypothetical protein YP_001832713.1 KEGG: bja:bll6012 hypothetical protein YP_001832714.1 PFAM: isochorismatase hydrolase; KEGG: bbt:BBta_2415 nicotinamidase/pyrazinamidase YP_001832715.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: mlo:mlr2187 hypothetical protein YP_001832716.1 PFAM: acyltransferase 3; KEGG: nar:Saro_1166 acyltransferase 3 YP_001832717.1 KEGG: rpe:RPE_2550 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001832718.1 KEGG: nve:NEMVE_v1g246176 predicted protein Pfam: RRM_1 PROSITE: GLY_RICH RRM YP_001832720.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_1116 ABC transporter related YP_001832721.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB1525 putative ABC transport system, integral membrane protein YP_001832722.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A1003 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_001832723.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bja:blr4446 ABC transporter amino acid-binding protein YP_001832724.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; GLUG domain protein; KEGG: nha:Nham_0943 filamentous haemagglutinin-like YP_001832725.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mex:Mext_4252 cystathionine beta-lyase YP_001832727.1 PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_1598 phosphinothricin N-acetyltransferase YP_001832728.1 KEGG: azc:AZC_1039 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001832729.1 KEGG: bra:BRADO4711 hypothetical protein YP_001832731.1 PFAM: protein of unknown function DUF983; KEGG: smd:Smed_1973 protein of unknown function DUF983 YP_001832732.1 TIGRFAM: acid phosphatase; PFAM: phosphoesterase; KEGG: rle:pRL110285 putative acid phosphatase YP_001832733.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: bte:BTH_I2670 di-haem cytochrome c peroxidase family protein YP_001832734.1 PFAM: Patatin; KEGG: bja:bll7964 hypothetical protein YP_001832735.1 PFAM: glycoside hydrolase family 25; KEGG: mex:Mext_3899 glycoside hydrolase family 25 YP_001832736.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_1269 binding-protein-dependent transport systems inner membrane component YP_001832737.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_1270 ABC transporter related YP_001832738.1 PFAM: glycosyl transferase family 2; KEGG: mac:MA2170 glycosyltransferase YP_001832739.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: bja:bll5251 putative transporter transmembrane protein YP_001832740.1 PFAM: polysaccharide deacetylase; KEGG: azc:AZC_2836 polysaccharide deacetylase YP_001832741.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: rpa:RPA3169 lipoyltransferase YP_001832743.1 PFAM: regulatory protein MarR; KEGG: nwi:Nwi_2885 transcriptional regulatory protein, MarR family YP_001832744.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMc04054 hypothetical protein YP_001832745.1 KEGG: bra:BRADO6543 conserved hypothetical protein; putative signal peptide YP_001832746.1 PFAM: protein of unknown function UPF0153; KEGG: rpd:RPD_1955 hypothetical protein YP_001832747.1 KEGG: mex:Mext_0928 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001832748.1 KEGG: sit:TM1040_0419 hypothetical protein YP_001832749.1 PFAM: GCN5-related N-acetyltransferase; KEGG: oan:Oant_1615 GCN5-related N-acetyltransferase YP_001832750.1 KEGG: rle:RL0945 putative 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_001832751.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rle:pRL70183 hypothetical protein YP_001832752.1 PFAM: protein of unknown function DUF1214; KEGG: nha:Nham_1402 protein of unknown function DUF1214 YP_001832753.1 KEGG: mex:Mext_0926 hypothetical protein YP_001832755.1 KEGG: mex:Mext_4416 hypothetical protein YP_001832756.1 PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: mex:Mext_4415 protein of unknown function DUF853 NPT hydrolase putative YP_001832757.1 PFAM: phosphate transporter; KEGG: bra:BRADO6359 putative low-affinity inorganic phosphate transport protein (PiT family) YP_001832758.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpa:RPA1859 hypothetical protein YP_001832759.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: rpc:RPC_1779 multi-sensor signal transduction histidine kinase YP_001832761.1 PFAM: Fe-S metabolism associated SufE; KEGG: nha:Nham_2625 Fe-S metabolism associated SufE YP_001832762.1 PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator YP_001832763.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: pla:Plav_0845 methionine-R-sulfoxide reductase YP_001832764.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: xau:Xaut_2839 oligopeptidase B YP_001832765.1 KEGG: azc:AZC_3052 hypothetical protein YP_001832766.1 PFAM: manganese and iron superoxide dismutase; KEGG: xau:Xaut_3319 superoxide dismutase YP_001832767.1 PFAM: YdjC family protein; KEGG: azo:azo0748 cellobiose phosphorylase YP_001832768.1 KEGG: nwi:Nwi_3052 transcriptional regulatory protein, TetR family YP_001832769.1 PFAM: regulatory protein TetR; KEGG: nwi:Nwi_3052 transcriptional regulatory protein, TetR family YP_001832770.1 PFAM: glycosyl transferase family 2; KEGG: syn:sll0501 putative glycosyl transferase YP_001832771.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: mex:Mext_3297 integral membrane protein MviN YP_001832772.1 KEGG: son:SO_A0168 ISSo9, nucleotidyltransferase domain protein YP_001832773.1 PFAM: protein of unknown function DUF86; KEGG: mfa:Mfla_2451 protein of unknown function DUF86 YP_001832774.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: mex:Mext_0414 formate--tetrahydrofolate ligase YP_001832775.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: oan:Oant_0136 peptidase M20 YP_001832776.1 PFAM: protein of unknown function DUF1491; KEGG: rpe:RPE_1874 protein of unknown function DUF1491 YP_001832777.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: ret:RHE_CH00450 hypothetical protein YP_001832778.1 PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: nwi:Nwi_2241 peptidase C15, pyroglutamyl peptidase I YP_001832779.1 KEGG: mpt:Mpe_A2419 MxaD protein YP_001832780.1 PFAM: aminotransferase class I and II; KEGG: mex:Mext_3658 aminotransferase class I and II YP_001832781.1 PFAM: DSBA oxidoreductase; KEGG: bja:bll4294 outer membrane protein YP_001832782.1 KEGG: bra:BRADO3597 hypothetical protein YP_001832783.1 PFAM: amino acid permease-associated region; KEGG: rpc:RPC_1838 amino acid permease-associated region YP_001832784.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: nha:Nham_0613 amine oxidase YP_001832785.1 PFAM: protein of unknown function DUF482; KEGG: azc:AZC_2321 hypothetical protein YP_001832786.1 PFAM: histidine triad (HIT) protein; KEGG: xau:Xaut_3536 histidine triad (HIT) protein YP_001832787.1 KEGG: mex:Mext_4802 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001832788.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: xau:Xaut_4537 ATP-dependent Clp protease adaptor protein ClpS YP_001832789.1 KEGG: mlo:mll0665 hypothetical protein YP_001832790.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: bra:BRADO4549 putative D-alanyl-D-alanine carboxypeptidase (peptidase S11)(dd-carboxypeptidase) YP_001832791.1 PFAM: heat shock protein DnaJ domain protein; KEGG: rpe:RPE_3408 heat shock protein DnaJ domain protein YP_001832792.1 PFAM: Glutathione S-transferase domain; KEGG: rru:Rru_A3193 glutathione S-transferase-like YP_001832793.1 PFAM: protein of unknown function DUF218; KEGG: bra:BRADO4236 hypothetical protein YP_001832794.1 PFAM: protein of unknown function DUF329; KEGG: xau:Xaut_2724 protein of unknown function DUF329 YP_001832795.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bbt:BBta_0900 Maf-like protein YP_001832796.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001832797.1 PFAM: O-methyltransferase family 3; KEGG: bwe:BcerKBAB4_1827 O-methyltransferase family 3 YP_001832798.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mex:Mext_4739 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001832799.1 KEGG: bja:blr3796 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase-related YP_001832800.1 KEGG: bbt:BBta_6628 hypothetical protein YP_001832801.1 PFAM: helix-turn-helix domain protein; KEGG: mex:Mext_2943 putative phage-related transcriptional regulator YP_001832802.1 KEGG: zmo:ZMO0744 hypothetical protein YP_001832803.1 PFAM: amino acid permease-associated region; KEGG: mbn:Mboo_1999 amino acid permease-associated region YP_001832805.1 KEGG: mca:MCA1026 hypothetical protein YP_001832806.1 PFAM: heat shock protein DnaJ domain protein; KEGG: mlo:mll4676 contains weak similarity to thioredoxin reductase YP_001832807.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: rru:Rru_A2869 exopolysaccharide synthesis, ExoD YP_001832809.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: drm:Dred_1995 sulphate transporter YP_001832810.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: nha:Nham_3560 thiosulphate-binding protein YP_001832811.1 PFAM: E1-E2 ATPase-associated domain protein; KEGG: mca:MCA1911 heavy metal translocating P-type ATPase YP_001832812.1 PFAM: OsmC family protein; KEGG: acr:Acry_2755 OsmC family protein YP_001832813.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: rpd:RPD_0593 aspartate/glutamate/uridylate kinase YP_001832814.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: rpd:RPD_0592 aspartate/glutamate/uridylate kinase YP_001832815.1 PFAM: E1-E2 ATPase-associated domain protein; KEGG: mca:MCA1911 heavy metal translocating P-type ATPase YP_001832816.1 PFAM: ribonuclease T2; KEGG: rru:Rru_A3450 ribonuclease T2 YP_001832817.1 KEGG: bbt:BBta_2494 putative exported protein of unknown function YP_001832818.1 KEGG: bja:bll5766 hypothetical protein YP_001832821.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: smd:Smed_4342 cell division topological specificity factor MinE YP_001832822.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: acr:Acry_1991 septum site-determining protein MinD YP_001832823.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: bmb:BruAb2_0860 septum formation inhibitor YP_001832824.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: bte:BTH_II2298 flavin reductase domain protein YP_001832825.1 PFAM: major facilitator superfamily MFS_1; KEGG: bte:BTH_I1400 major facilitator family transporter YP_001832826.1 KEGG: nar:Saro_2521 protein of unknown function DUF1476 YP_001832827.1 KEGG: bbt:BBta_2219 hypothetical protein YP_001832828.1 KEGG: azc:AZC_3998 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_001832829.1 KEGG: bbt:BBta_2974 hypothetical protein YP_001832830.1 KEGG: bbt:BBta_1762 putative exported protein of unknown function YP_001832831.1 KEGG: mex:Mext_2878 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Helix-hairpin-helix DNA-binding class 1 YP_001832832.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mex:Mext_2877 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001832833.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: mex:Mext_2876 molybdopterin converting factor, subunit 1 YP_001832834.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: mlo:mlr7915 molybdopterin converting factor, subunit 2 YP_001832835.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: xau:Xaut_4224 surface antigen (D15) YP_001832836.1 PFAM: protein of unknown function DUF490; KEGG: xau:Xaut_4225 protein of unknown function DUF490 YP_001832837.1 KEGG: pla:Plav_0662 putative DNA topology modulation protein FlaR YP_001832838.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mag:amb0238 transcriptional regulator YP_001832839.1 PFAM: putative sugar-binding domain protein; KEGG: atc:AGR_L_843 operon regulator YP_001832840.1 PFAM: MOFRL domain protein; KEGG: gbe:GbCGDNIH1_0364 glycerate dehydrogenase YP_001832841.1 PFAM: lipolytic protein G-D-S-L family; KEGG: ava:Ava_3904 lipolytic enzyme, G-D-S-L YP_001832842.1 TIGRFAM: valyl-tRNA synthetase; KEGG: mex:Mext_4694 valyl-tRNA synthetase YP_001832843.1 KEGG: nwi:Nwi_1435 hypothetical protein YP_001832844.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mex:Mext_4696 type I secretion outer membrane protein, TolC family YP_001832845.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; KEGG: xau:Xaut_4234 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001832847.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll6511 acetyltransferase YP_001832848.1 PFAM: dihydrofolate reductase region; KEGG: xau:Xaut_1420 dihydrofolate reductase YP_001832849.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: rpa:RPA3491 putative protease subunit HflK YP_001832850.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: xau:Xaut_1663 HflC protein YP_001832851.1 KEGG: gdi:GDI3686 hypothetical protein YP_001832852.1 KEGG: mex:Mext_2656 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001832853.1 PFAM: Patatin; KEGG: bam:Bamb_5833 patatin YP_001832854.1 PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_PE00049 adenylate cyclase protein YP_001832856.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001832857.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: azc:AZC_2312 chaperonin YP_001832858.1 PFAM: histone family protein DNA-binding protein; KEGG: xau:Xaut_4386 integration host factor, alpha subunit YP_001832859.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: mex:Mext_4485 ABC transporter domain protein YP_001832860.1 KEGG: rpd:RPD_2521 hypothetical protein YP_001832861.1 PFAM: ABC-2 type transporter; KEGG: mex:Mext_0566 ABC-2 type transporter YP_001832862.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: mex:Mext_0565 ABC transporter related YP_001832863.1 PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_0564 secretion protein HlyD family protein YP_001832864.1 KEGG: rpa:RPA4109 hypothetical protein YP_001832865.1 PFAM: regulatory protein TetR; KEGG: rpa:RPA2189 possible transcriptional regulator, TetR family YP_001832866.1 KEGG: rpa:RPA3831 hypothetical protein YP_001832867.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azc:AZC_2866 enoyl-CoA hydratase YP_001832868.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: azc:AZC_0931 putative 2-nitropropane dioxygenase YP_001832869.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: mag:amb4437 dehydrogenase YP_001832870.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: mag:amb3229 electron transfer flavoprotein YP_001832871.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dar:Daro_1211 electron transfer flavoprotein beta-subunit YP_001832872.1 PFAM: thioesterase superfamily protein; KEGG: rru:Rru_A1307 thioesterase superfamily YP_001832873.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rru:Rru_A1308 acyl-CoA dehydrogenase YP_001832874.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rru:Rru_A1309 acetoacetyl-CoA reductase YP_001832875.1 KEGG: rru:Rru_A1310 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001832876.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rru:Rru_A1312 AMP-dependent synthetase and ligase YP_001832877.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: rru:Rru_A1313 membrane protein involved in aromatic hydrocarbon degradation YP_001832878.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pau:PA14_37400 putative transcriptional regulator, AraC family YP_001832879.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pca:Pcar_1081 oxidoreductase, putative short-chain alcohol dehydrogenase YP_001832880.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: rle:RL2355 putative carboxymuconolactone decarboxylase YP_001832881.1 PFAM: acyltransferase 3; KEGG: cak:Caul_3692 acyltransferase 3 YP_001832882.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: xau:Xaut_3342 Rieske (2Fe-2S) domain protein YP_001832883.1 KEGG: dre:552915 dynein, axonemal, heavy polypeptide 9 like YP_001832884.1 PFAM: aldo/keto reductase; KEGG: xau:Xaut_3336 aldo/keto reductase YP_001832885.1 PFAM: protein of unknown function DUF1311; KEGG: mes:Meso_2486 protein of unknown function DUF1311 YP_001832886.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_4367 amine oxidase YP_001832887.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_2420 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_001832888.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_3337 transcriptional regulator, LysR family YP_001832889.1 KEGG: scl:sce2280 hypothetical WD-repeat protein alr2800 YP_001832890.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: rle:RL3363 putative mannose-6-phosphate isomerase YP_001832891.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001832892.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: bja:blr7524 ATP phosphoribosyltransferase regulatory subunit YP_001832893.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001832894.1 KEGG: atc:AGR_C_4127 hypothetical protein YP_001832895.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cak:Caul_0933 DEAD/DEAH box helicase domain protein YP_001832896.1 KEGG: azo:azo1501 hypothetical protein YP_001832897.1 PFAM: protein of unknown function UPF0153; KEGG: mca:MCA0219 hypothetical protein YP_001832898.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: hne:HNE_1522 alkylated DNA repair protein AlkB YP_001832899.1 PFAM: protein of unknown function DUF1467; KEGG: bja:bsl4900 hypothetical protein YP_001832900.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_2647 ErfK/YbiS/YcfS/YnhG family protein YP_001832901.1 PFAM: protein of unknown function DUF971; KEGG: bcs:BCAN_A0971 protein of unknown function DUF971 YP_001832902.1 KEGG: xau:Xaut_1387 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001832903.1 KEGG: bcs:BCAN_A0058 nucleotide-binding protein-like protein YP_001832904.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00118 probable amino acid ABC transporter, substrate-binding protein YP_001832905.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpb:RPB_3394 3-hydroxyisobutyrate dehydrogenase YP_001832906.1 KEGG: mex:Mext_4236 hypothetical protein YP_001832907.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mex:Mext_4237 enoyl-CoA hydratase/isomerase YP_001832908.1 PFAM: Domain of unknown function DUF1849; KEGG: mex:Mext_4720 domain of unknown function DUF1849 YP_001832909.1 PFAM: Endoribonuclease L-PSP; KEGG: mex:Mext_4070 endoribonuclease L-PSP YP_001832910.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: mex:Mext_4069 glycerophosphoryl diester phosphodiesterase YP_001832911.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: dps:DP2330 similar to indole-3-pyruvate decarboxylase YP_001832912.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1064 ABC transporter related YP_001832913.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rpc:RPC_2428 lipoprotein releasing system, transmembrane protein, LolC/E family YP_001832914.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001832915.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: acr:Acry_2590 methyl-accepting chemotaxis sensory transducer YP_001832917.1 PFAM: glycosyl transferase family 28; KEGG: gvi:glr3757 probable glucosyltransferase YP_001832918.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: rpd:RPD_2618 D-fructose-6-phosphate amidotransferase YP_001832919.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: xau:Xaut_4419 nucleotidyl transferase YP_001832921.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_001832922.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_001832923.1 KEGG: lpf:lpl2472 hypothetical protein YP_001832924.1 PFAM: cytochrome P450; KEGG: atc:AGR_C_2890 cytochrome P450 hydroxylase YP_001832925.1 PFAM: Ion transport 2 domain protein; KEGG: ppd:Ppro_0413 ion transport 2 domain protein YP_001832926.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001832927.1 KEGG: mes:Meso_0149 hypothetical protein YP_001832928.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001832930.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: xau:Xaut_4163 hemolysin A YP_001832931.1 KEGG: xau:Xaut_4164 putative RNA methyltransferase YP_001832932.1 KEGG: rsq:Rsph17025_4208 hypothetical protein YP_001832933.1 KEGG: mex:Mext_2318 hypothetical protein YP_001832934.1 KEGG: cph:Cpha266_2437 hypothetical protein YP_001832935.1 PFAM: nitroreductase; KEGG: bbt:BBta_5206 hypothetical protein YP_001832936.1 KEGG: rpa:RPA3602 hypothetical protein YP_001832937.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bbt:BBta_3039 putative succinate-semialdehyde dehydrogenase YP_001832939.1 KEGG: cpv:cgd8_1100 NRAP like nucleolar RNA associated protein YP_001832940.1 PFAM: Glutathione S-transferase domain; KEGG: gdi:GDI2774 putative glutathionine S-transferase YP_001832941.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr1899 short chain dehydrogenase YP_001832942.1 PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_B0550 putative hydrolase, alpha/beta fold family YP_001832943.1 PFAM: regulatory protein MarR; KEGG: mlo:mlr1898 probable transcriptional regulator YP_001832944.1 PFAM: NmrA family protein; KEGG: mlo:mlr1895 hypothetical protein YP_001832945.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_C1385 transcriptional regulator, AraC family YP_001832946.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_C1384 short-chain dehydrogenase/reductase SDR YP_001832947.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: bja:blr4890 hypothetical protein YP_001832948.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gdi:GDI3852 putative transcriptional regulator, LysR family YP_001832949.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bxe:Bxe_B1269 putative NADH-flavin oxidoreductase / NADH oxidase YP_001832950.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_B1273 putative oxidoreductase YP_001832951.1 KEGG: oan:Oant_3233 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_001832952.1 KEGG: bte:BTH_I1762 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756 YP_001832953.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: fre:Franean1_2518 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_001832954.1 PFAM: RimK domain protein ATP-grasp; KEGG: ade:Adeh_2122 hypothetical protein YP_001832956.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xau:Xaut_3834 redoxin domain protein YP_001832957.1 PFAM: Methyltransferase type 11; KEGG: mag:amb2283 hypothetical protein YP_001832958.1 PFAM: Cephalosporin hydroxylase; KEGG: syw:SYNW0087 hypothetical protein YP_001832959.1 PFAM: TonB-dependent receptor; KEGG: pfl:PFL_0213 TonB dependent receptor, putative YP_001832960.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: smd:Smed_5653 acyl-CoA dehydrogenase type 2 domain YP_001832961.1 KEGG: bbt:BBta_4836 hypothetical protein YP_001832962.1 KEGG: bbt:BBta_4857 nitrilotriacetate monooxygenase component A YP_001832963.1 KEGG: xau:Xaut_2769 hypothetical protein YP_001832964.1 KEGG: bxe:Bxe_A2175 putative nitrilotriacetate monooxygenase component A, NtaA/SnaA/SoxA/DszA family YP_001832965.1 PFAM: nitroreductase; KEGG: cau:Caur_3170 nitroreductase YP_001832966.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: smd:Smed_5663 acyl-CoA dehydrogenase type 2 domain YP_001832967.1 PFAM: Luciferase-like monooxygenase; KEGG: atc:AGR_L_2763 hypothetical protein YP_001832968.1 KEGG: bvi:Bcep1808_6885 hypothetical protein YP_001832969.1 PFAM: Patatin; KEGG: bja:blr2776 putative patatin-like phospholipase YP_001832971.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: ret:RHE_CH00633 putative potassium-efflux system protein YP_001832972.1 PFAM: UspA domain protein; KEGG: mfa:Mfla_2660 UspA YP_001832973.1 KEGG: bpd:BURPS668_3911 hypothetical protein YP_001832975.1 KEGG: xau:Xaut_0099 hypothetical protein YP_001832976.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: azc:AZC_2814 putative exopolysaccharide regulatory protein YP_001832977.1 KEGG: nwi:Nwi_0986 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001832978.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bba:Bd0664 similar to lipase LipA YP_001832979.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mex:Mext_3273 UDP-glucose 4-epimerase YP_001832980.1 KEGG: pha:PSHAa1036 hypothetical protein ; membrane protein YP_001832981.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001832982.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001832983.1 KEGG: rpb:RPB_2602 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_001832984.1 PFAM: Lytic transglycosylase catalytic; KEGG: mex:Mext_3190 lytic transglycosylase catalytic YP_001832985.1 PFAM: alpha/beta hydrolase fold; KEGG: xau:Xaut_1013 alpha/beta hydrolase fold YP_001832986.1 PFAM: porin; KEGG: mex:Mext_3186 porin YP_001832987.1 KEGG: mex:Mext_2011 hypothetical protein YP_001832988.1 KEGG: osa:4326983 Os01g0329300 YP_001832989.1 KEGG: xcc:XCC2874 hypothetical protein YP_001832990.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: mex:Mext_3064 glutamyl-tRNA(Gln) amidotransferase, B subunit YP_001832991.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001832992.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: nha:Nham_2277 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001832993.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: smd:Smed_1240 multiple antibiotic resistance (MarC)-related protein YP_001832994.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: reh:H16_A0049 putative protein-S-isoprenylcysteine methyltransferase YP_001832995.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; PAS fold-3 domain protein; KEGG: pla:Plav_1935 integral membrane sensor signal transduction histidine kinase YP_001832996.1 PFAM: response regulator receiver; KEGG: scl:sce5166 two component response regulator YP_001832997.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mag:amb2850 signal transduction histidine kinase YP_001832998.1 PFAM: malate synthase; KEGG: aeh:Mlg_1646 malate synthase G YP_001833000.1 PFAM: regulatory protein ArsR; KEGG: stp:Strop_3509 regulatory protein, ArsR YP_001833002.1 KEGG: bch:Bcen2424_5421 hypothetical protein YP_001833003.1 KEGG: pol:Bpro_0110 hypothetical protein YP_001833004.1 PFAM: carbonic anhydrase; KEGG: noc:Noc_1341 carbonic anhydrase YP_001833005.1 PFAM: regulatory protein TetR; KEGG: kra:Krad_0136 transcriptional regulator, TetR family YP_001833006.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: scl:sce1557 hypothetical protein YP_001833007.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; KEGG: ppr:PBPRB0014 hypothetical acyltransferase family protein YP_001833008.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001833009.1 KEGG: afw:Anae109_0029 major facilitator superfamily MFS_1 YP_001833010.1 PFAM: alpha/beta hydrolase fold; KEGG: lpf:lpl0291 hypothetical protein YP_001833011.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_001833012.1 PFAM: FAD linked oxidase domain protein; KEGG: swi:Swit_0991 D-lactate dehydrogenase (cytochrome) YP_001833013.1 PFAM: FAD linked oxidase domain protein; KEGG: mes:Meso_0363 FAD linked oxidase-like YP_001833014.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rsp:RSP_1018 glycolate oxidase iron-sulfur subunit YP_001833015.1 PFAM: protein of unknown function DUF535; KEGG: esa:ESA_02461 hypothetical protein YP_001833016.1 PFAM: TOBE domain protein; KEGG: rpa:RPA4719 molybdo-pterin binding protein YP_001833017.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001833018.1 PFAM: ferredoxin; KEGG: pna:Pnap_1587 ferredoxin YP_001833019.1 KEGG: amr:AM1_B0141 hypothetical protein YP_001833021.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pla:Plav_0645 CMP/dCMP deaminase zinc-binding YP_001833022.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_3504 putative ABC multidrug transporter, fused ATPase and permease domains YP_001833023.1 PFAM: Peptidoglycan-binding LysM; KEGG: bbt:BBta_3954 hypothetical protein YP_001833024.1 PFAM: conserved hypothetical protein; KEGG: rpa:RPA2004 hypothetical protein YP_001833025.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA3293 hypothetical protein YP_001833026.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: bbt:BBta_3501 putative alpha-isopropylmalate/homocitrate synthase family transferase YP_001833027.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_2088 GCN5-related N-acetyltransferase YP_001833028.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001833029.1 KEGG: rpb:RPB_4438 SpoVT/AbrB-like YP_001833030.1 KEGG: tpe:Tpen_0017 nucleoside 2-deoxyribosyltransferase YP_001833031.1 KEGG: tcx:Tcr_0335 hypothetical protein YP_001833033.1 PFAM: Choloylglycine hydrolase; KEGG: dac:Daci_3467 choloylglycine hydrolase YP_001833034.1 PFAM: Fmu (Sun) domain protein; KEGG: azc:AZC_3702 putative RNA methyltransferase YP_001833035.1 PFAM: protein of unknown function DUF1123; KEGG: nha:Nham_2544 protein of unknown function DUF1123 YP_001833036.1 KEGG: rpb:RPB_3193 inositol-5-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_001833037.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: azc:AZC_3371 putative multidrug efflux protein YP_001833038.1 PFAM: UspA domain protein; KEGG: bxe:Bxe_A3827 putative universal stress protein YP_001833039.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: mex:Mext_3432 ribosomal RNA methyltransferase RrmJ/FtsJ YP_001833040.1 PFAM: Ppx/GppA phosphatase; KEGG: mex:Mext_3433 Ppx/GppA phosphatase YP_001833041.1 KEGG: azc:AZC_3364 hypothetical protein YP_001833042.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_0912 ATP-binding region ATPase domain protein YP_001833043.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: bbt:BBta_5174 putative peptidase S10, serine carboxypeptidase YP_001833044.1 KEGG: mca:MCA0267 hypothetical protein YP_001833045.1 stationary phase protein that binds TrpR repressor YP_001833046.1 PFAM: YceI family protein; KEGG: gdi:GDI1483 hypothetical protein YP_001833047.1 PFAM: cytochrome B561; KEGG: gdi:GDI1482 putative cytochrome b561 YP_001833048.1 PFAM: YceI family protein; KEGG: gdi:GDI1481 hypothetical protein YP_001833049.1 PFAM: Pirin domain protein; KEGG: gdi:GDI0848 hypothetical protein YP_001833050.1 converts acetoacetate to acetone and carbon dioxide YP_001833051.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gdi:GDI1147 pyridine nucleotide-disulphide oxidoreductase YP_001833052.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mex:Mext_3838 peroxiredoxin YP_001833053.1 PFAM: beta-lactamase domain protein; KEGG: sme:SMc00276 hypothetical protein YP_001833054.1 PFAM: regulatory protein ArsR; KEGG: bov:BOV_A0396 transcriptional regulator, ArsR family YP_001833055.1 PFAM: protein of unknown function DUF81; KEGG: oan:Oant_4660 protein of unknown function DUF81 YP_001833056.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001833057.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpd:RPD_1639 tetratricopeptide TPR_2 YP_001833058.1 PFAM: sulfatase; KEGG: bja:bll5074 putative arylsulfatase YP_001833060.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001833061.1 KEGG: bbt:BBta_5892 hypothetical protein YP_001833062.1 PFAM: leucyl/phenylalanyl-tRNA--protein transferase; KEGG: xau:Xaut_3496 leucyltransferase YP_001833063.1 KEGG: mex:Mext_1100 conserved hypothetical protein YP_001833064.1 PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: nwi:Nwi_1760 NADH-ubiquinone oxidoreductase YP_001833065.1 PFAM: LrgA family protein; KEGG: bja:blr1347 hypothetical protein YP_001833066.1 PFAM: LrgB family protein; KEGG: reu:Reut_A2795 LrgB-like protein YP_001833067.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001833068.1 PFAM: peptidase S16 lon domain protein; KEGG: bbt:BBta_3560 putative ATP-dependent protease La YP_001833070.1 KEGG: scl:sce7776 two-component hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001833071.1 PFAM: Glutathione S-transferase domain; KEGG: reu:Reut_A0763 glutathione S-transferase, N-terminal YP_001833072.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mpt:Mpe_A1565 hypothetical protein YP_001833073.1 PFAM: response regulator receiver; Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: hau:Haur_4511 Glu/Leu/Phe/Val dehydrogenase YP_001833074.1 KEGG: rha:RHA1_ro00070 hypothetical protein YP_001833075.1 PFAM: Glutathione S-transferase domain; KEGG: pol:Bpro_3007 glutathione S-transferase-like YP_001833076.1 PFAM: amidinotransferase; KEGG: nwi:Nwi_2321 amidinotransferase YP_001833077.1 PFAM: small multidrug resistance protein; KEGG: nha:Nham_1679 small multidrug resistance protein YP_001833078.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: gdi:GDI0166 putative molybdopterin-guanine dinucleotide biosynthesis protein B YP_001833079.1 KEGG: cyb:CYB_0037 nitrate ABC transporter, ATP-binding protein NtrC YP_001833080.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: pat:Patl_2529 response regulator receiver and ANTAR domain protein YP_001833081.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; KEGG: mfa:Mfla_0317 molybdopterin oxidoreductase YP_001833082.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; nitrite reductase [NAD(P)H], small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ppf:Pput_4015 nitrite reductase (NAD(P)H), large subunit YP_001833083.1 PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA1213 nitrate transporter YP_001833084.1 PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gdi:GDI0493 putative flavohemoprotein YP_001833085.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein; KEGG: gdi:GDI0494 putative transcriptional regulator YP_001833086.1 KEGG: rpd:RPD_0591 DNA helicase, putative YP_001833088.1 KEGG: rsh:Rsph17029_2609 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase YP_001833089.1 PFAM: methyltransferase small; KEGG: xau:Xaut_1375 methyltransferase small YP_001833090.1 KEGG: bra:BRADO0368 hypothetical protein YP_001833091.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001833092.1 KEGG: mex:Mext_4423 hypothetical protein YP_001833093.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bja:bsr5907 probable transcriptional regulator YP_001833095.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: rpc:RPC_1524 multi-sensor hybrid histidine kinase YP_001833097.1 KEGG: mex:Mext_2609 hypothetical protein YP_001833098.1 KEGG: xau:Xaut_1697 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein YP_001833099.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: azc:AZC_1024 acetyl-CoA carboxylase carboxyl transferase beta subunit YP_001833100.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001833102.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001833103.1 PFAM: regulatory protein LuxR; KEGG: rle:pRL100454 putative transcriptional regulator YP_001833104.1 PFAM: regulatory protein LuxR; KEGG: bur:Bcep18194_B1619 transcriptional regulator, LuxR family YP_001833105.1 PFAM: regulatory protein LuxR; KEGG: rpb:RPB_2794 transcriptional regulator, LuxR family YP_001833106.1 PFAM: OsmC family protein; KEGG: cak:Caul_5086 OsmC family protein YP_001833107.1 KEGG: bra:BRADO5888 hypothetical protein YP_001833108.1 PFAM: MgtC/SapB transporter; KEGG: bja:bll7766 hypothetical protein YP_001833109.1 KEGG: gdi:GDI0596 hypothetical protein YP_001833110.1 KEGG: xau:Xaut_0561 hypothetical protein YP_001833111.1 KEGG: xau:Xaut_0560 GCN5-related N-acetyltransferase YP_001833112.1 KEGG: xau:Xaut_0559 adenylate kinase-like protein YP_001833113.1 KEGG: cak:Caul_1163 protein of unknown function DUF437 YP_001833114.1 KEGG: xau:Xaut_0558 hypothetical protein YP_001833115.1 PFAM: carbonic anhydrase; KEGG: rpb:RPB_4620 carbonic anhydrase YP_001833116.1 KEGG: gdi:GDI2313 putative ABC-type Fe3+ transport system periplasmic component YP_001833117.1 PFAM: transport system permease protein; KEGG: gdi:GDI2312 putative ABC-type Fe3+ transport system permease component YP_001833118.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gdi:GDI2311 putative ABC-type Fe3+ transport system ATP-binding component YP_001833119.1 PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_0023 major facilitator superfamily MFS_1 YP_001833120.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: xau:Xaut_2308 major facilitator superfamily MFS_1 YP_001833121.1 KEGG: rpb:RPB_1508 hypothetical protein YP_001833122.1 KEGG: mex:Mext_0959 ubiquinone biosynthesis O-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12 YP_001833125.1 KEGG: eba:ebA3304 hypoxanthine-guanine phosphoribosyltransferase YP_001833126.1 PFAM: polysaccharide biosynthesis protein; KEGG: ppr:PBPRA2684 hypothetical protein YP_001833127.1 PFAM: FAD linked oxidase domain protein; KEGG: rpd:RPD_1246 FAD linked oxidase-like YP_001833128.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2291 cyclopropane-fatty-acyl-phospholipid synthase YP_001833129.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: pol:Bpro_0509 4-oxalocrotonate tautomerase YP_001833130.1 KEGG: bxe:Bxe_C0750 Mn2+/Fe2+ transporter, NRAMP family YP_001833131.1 KEGG: bte:BTH_II1873 levanase; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32 YP_001833132.1 PFAM: glycoside hydrolase family 68; KEGG: bch:Bcen2424_4270 levansucrase YP_001833133.1 PFAM: protein of unknown function DUF159; KEGG: rpd:RPD_1245 protein of unknown function DUF159 YP_001833134.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: mex:Mext_4105 SUA5/YciO/YrdC/YwlC family protein YP_001833135.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gdi:GDI3796 putative outer membrane protein YP_001833136.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gbe:GbCGDNIH1_1723 multidrug resistance protein B YP_001833137.1 PFAM: secretion protein HlyD family protein; KEGG: gbe:GbCGDNIH1_1724 multidrug resistance protein A YP_001833138.1 PFAM: regulatory protein TetR; KEGG: mca:MCA2256 transcriptional regulator, TetR family YP_001833139.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: xau:Xaut_2373 phage SPO1 DNA polymerase-related protein YP_001833140.1 KEGG: xau:Xaut_3321 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_001833142.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pst:PSPTO_2607 TonB-dependent siderophore receptor, putative YP_001833143.1 KEGG: bch:Bcen2424_4026 ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein YP_001833144.1 KEGG: azc:AZC_3122 PAS protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001833145.1 PFAM: regulatory protein LysR; TOBE domain protein; KEGG: rpd:RPD_2476 ModE molybdate transport repressor domain YP_001833147.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001833148.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001833150.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001833151.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001833152.1 KEGG: xau:Xaut_4771 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001833153.1 PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mlo:mlr0329 recombination factor protein RarA YP_001833154.1 PFAM: alpha/beta hydrolase fold; KEGG: bmn:BMA10247_0277 hydrolase, alpha/beta fold family YP_001833155.1 PFAM: fatty acid hydroxylase; KEGG: afm:AFUA_6G00740 conserved hypothetical protein YP_001833156.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001833157.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rpc:RPC_3189 transcriptional regulator, Crp/Fnr family YP_001833158.1 KEGG: gdi:GDI3488 hypothetical protein YP_001833159.1 PFAM: glycosyl transferase family 2; KEGG: sak:SAK_1253 capsular polysaccharide biosynthesis protein CpsJ YP_001833161.1 KEGG: gbe:GbCGDNIH1_0645 pyridine nucleotide-disulfide oxidoreductase family YP_001833162.1 PFAM: Luciferase-like monooxygenase; KEGG: xau:Xaut_1213 alkanesulfonate monooxygenase YP_001833163.1 KEGG: bbt:BBta_3195 putative luciferase-like protein, putative alkanesulfonate monooxygenase YP_001833164.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pap:PSPA7_2915 hypothetical protein YP_001833165.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mex:Mext_3664 acyl-CoA dehydrogenase type 2 domain YP_001833166.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: mex:Mext_2235 regulatory protein AsnC/Lrp family YP_001833167.1 KEGG: azc:AZC_0167 hypothetical protein YP_001833168.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_2775 ABC transporter related YP_001833169.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_1168 binding-protein-dependent transport systems inner membrane component YP_001833171.1 KEGG: bbt:BBta_2963 putative membrane transporter YP_001833172.1 KEGG: rpa:RPA4573 hypothetical protein YP_001833173.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_001833174.1 KEGG: xau:Xaut_0236 hypothetical protein YP_001833175.1 PFAM: DinB family protein; KEGG: oan:Oant_2595 DinB family protein YP_001833176.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_0951 transcriptional regulator, LysR family YP_001833177.1 KEGG: bja:bll4696 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_001833178.1 KEGG: cvi:CV_0172 poly (3-hydroxybutyrate) depolymerase YP_001833179.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mes:Meso_1397 single-strand binding protein YP_001833180.1 PFAM: Heparinase II/III family protein; KEGG: xau:Xaut_0039 heparinase II/III family protein YP_001833181.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: xau:Xaut_0038 sun protein YP_001833182.1 PFAM: protein of unknown function DUF1674; KEGG: xau:Xaut_1806 protein of unknown function DUF1674 YP_001833183.1 PFAM: TonB-dependent receptor plug; KEGG: sat:SYN_01058 TonB dependent receptor family YP_001833184.1 PFAM: periplasmic binding protein; KEGG: sfu:Sfum_3702 periplasmic binding protein YP_001833185.1 KEGG: sat:SYN_00840 hypothetical cytosolic protein YP_001833186.1 KEGG: mex:Mext_4786 membrane protein involved in the export of O-antigen and teichoic acid-like protein YP_001833187.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rle:RL1132 putative transmembrane protein YP_001833188.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: sme:SMa1052 hypothetical protein YP_001833189.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: smd:Smed_4324 GntR domain protein YP_001833190.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: acr:Acry_2399 NAD-dependent epimerase/dehydratase YP_001833191.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4374 major facilitator family transporter YP_001833192.1 PFAM: class II aldolase/adducin family protein; KEGG: xau:Xaut_1030 class II aldolase/adducin family protein YP_001833193.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xau:Xaut_1029 periplasmic binding protein/LacI transcriptional regulator YP_001833194.1 PFAM: major facilitator superfamily MFS_1; KEGG: xau:Xaut_1028 major facilitator superfamily MFS_1 YP_001833195.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bbt:BBta_2897 putative dehydrogenase, NAD(P)-binding domain YP_001833196.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: xau:Xaut_1026 hydroxypyruvate isomerase YP_001833197.1 PFAM: type III effector Hrp-dependent outers; KEGG: bja:blr2930 hypothetical protein YP_001833198.1 PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll1281 hypothetical protein YP_001833199.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A4867 transcriptional regulator, LysR family YP_001833200.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sme:SMb20210 putative oxidoreductase protein YP_001833201.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: ret:RHE_PF00539 probable dioxygenase protein YP_001833202.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_0454 TonB-dependent outer membrane receptor for cobalamin and Fe transport YP_001833203.1 KEGG: fre:Franean1_3545 hypothetical protein YP_001833204.1 KEGG: ret:RHE_CH02620 hypothetical protein YP_001833205.1 PFAM: protein of unknown function DUF336; KEGG: bbt:BBta_5732 hypothetical protein YP_001833206.1 KEGG: gdi:GDI0683 hypothetical protein YP_001833207.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sme:SMa2355 DNA polymerase IV YP_001833208.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: cak:Caul_2971 poly-beta-hydroxybutyrate polymerase domain protein YP_001833209.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: xau:Xaut_0368 PHB de-polymerase domain protein YP_001833210.1 KEGG: rpe:RPE_0575 hypothetical protein YP_001833211.1 PFAM: protein of unknown function LppY and LpqO; KEGG: aba:Acid345_3442 protein of unknown function LppY and LpqO YP_001833212.1 KEGG: rle:RL4555 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein YP_001833214.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: msm:MSMEG_5680 glyoxalase family protein YP_001833215.1 KEGG: cak:Caul_3766 hypothetical protein YP_001833216.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001833217.1 KEGG: mex:Mext_1623 glycosyl transferase group 1 YP_001833218.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: azc:AZC_4444 translation initiation factor 3 YP_001833219.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mes:Meso_3582 thioredoxin YP_001833220.1 KEGG: psb:Psyr_3318 hypothetical protein YP_001833221.1 PFAM: secretion protein HlyD family protein; KEGG: mca:MCA1810 hypothetical protein YP_001833222.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eli:ELI_11040 ABC transporter, ATP-binding protein YP_001833223.1 PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease protein, putative YP_001833224.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_4103 regulatory protein TetR YP_001833225.1 PFAM: Pirin domain protein; KEGG: cak:Caul_0818 pirin domain protein YP_001833227.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pde:Pden_4239 methylated-DNA--protein-cysteine methyltransferase YP_001833228.1 PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A0872 putative transport transmembrane protein YP_001833229.1 PFAM: protein of unknown function DUF336; KEGG: gox:GOX0922 hypothetical protein YP_001833230.1 KEGG: gdi:GDI0861 putative major royal jelly-like protein YP_001833232.1 KEGG: xac:XAC2169 methyl-accepting chemotaxis protein YP_001833233.1 PFAM: acyltransferase 3; KEGG: gur:Gura_0699 acyltransferase 3 YP_001833234.1 KEGG: gdi:GDI0612 putative 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type I; PFAM: dehydroquinase class I YP_001833235.1 KEGG: mex:Mext_3096 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit YP_001833236.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azc:AZC_2087 putative MFS dicarboxylate transporter YP_001833238.1 KEGG: atc:AGR_L_1520 hypothetical protein YP_001833240.1 KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein YP_001833241.1 KEGG: dre:799000 hypothetical protein LOC799000 YP_001833242.1 KEGG: kra:Krad_4676 hypothetical protein YP_001833244.1 KEGG: sme:SMc01448 hypothetical protein YP_001833245.1 TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: swi:Swit_2241 arsenate resistance ArsH YP_001833246.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: oan:Oant_3198 arsenical-resistance protein YP_001833247.1 PFAM: arsenate reductase and related; KEGG: smd:Smed_5055 arsenate reductase YP_001833248.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rpc:RPC_0618 protein tyrosine phosphatase YP_001833249.1 SMART: regulatory protein ArsR; KEGG: rpc:RPC_0619 putative transcriptional regulator, ArsR family YP_001833250.1 KEGG: rpc:RPC_2461 ATPase, E1-E2 type; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein YP_001833251.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: bbt:BBta_5570 putative membrane protein of unknown function YP_001833252.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: mlo:mll2704 probable acid phosphatase YP_001833253.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rpa:RPA0156 TonB like protein YP_001833254.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gbe:GbCGDNIH1_1104 TolR protein YP_001833255.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpa:RPA0154 possible MotA/TolQ/ExbB proton channel family YP_001833256.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: zmo:ZMO1807 TonB-dependent receptor YP_001833257.1 PFAM: protein of unknown function DUF81; KEGG: mfa:Mfla_1552 protein of unknown function DUF81 YP_001833258.1 PFAM: acyltransferase 3; KEGG: bxe:Bxe_B0486 hypothetical protein YP_001833260.1 PFAM: outer membrane efflux protein; KEGG: gdi:GDI1515 putative type I secretion outer membrane protein, TolC YP_001833261.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gdi:GDI1514 putative resistence protein YP_001833262.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: gdi:GDI1513 putative heavy-metal ion transporter YP_001833263.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gdi:GDI1512 putative two component response regulator YP_001833264.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gdi:GDI1511 putative sensor histidine kinase YP_001833265.1 PFAM: Carbohydrate-selective porin OprB; KEGG: zmo:ZMO0064 carbohydrate-selective porin YP_001833266.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001833267.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: shn:Shewana3_3575 CutA1 divalent ion tolerance protein YP_001833268.1 PFAM: creatinase; peptidase M24; KEGG: rpd:RPD_3379 peptidase M24 YP_001833271.1 PFAM: Radical SAM domain protein; KEGG: sus:Acid_4134 radical SAM domain protein YP_001833272.1 KEGG: smd:Smed_4170 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_001833273.1 PFAM: thiazole biosynthesis family protein; KEGG: oan:Oant_0282 thiazole biosynthesis family protein YP_001833274.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: rde:RD1_0748 thiamine biosynthesis protein ThiS, putative YP_001833275.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll5793 thiamine biosynthesis oxidoreductase ThiO YP_001833276.1 PFAM: Glutathione S-transferase domain; KEGG: mag:amb0787 glutathione S-transferase YP_001833277.1 KEGG: spc:Sputcn32_3843 hypothetical protein YP_001833279.1 KEGG: spc:Sputcn32_3840 hypothetical protein YP_001833280.1 KEGG: mlo:mll5084 hypothetical protein YP_001833281.1 KEGG: bcs:BCAN_A0546 hypothetical protein YP_001833282.1 PFAM: protein of unknown function DUF344; KEGG: mgm:Mmc1_0146 protein of unknown function DUF344 YP_001833283.1 TIGRFAM: double-strand break repair protein AddB; KEGG: mex:Mext_4439 double-strand break repair protein AddB YP_001833284.1 TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: pla:Plav_0138 double-strand break repair helicase AddA YP_001833285.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: mex:Mext_4442 thioredoxin YP_001833286.1 PFAM: Radical SAM domain protein; KEGG: bpe:BP2659 hypothetical protein YP_001833287.1 TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mlo:mll8751 hypothetical protein YP_001833288.1 PFAM: regulatory protein TetR; KEGG: bxe:Bxe_B2672 transcriptional regulator, TetR family YP_001833289.1 PFAM: isochorismatase hydrolase; KEGG: zmo:ZMO1887 isochorismatase YP_001833290.1 TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: zmo:ZMO1886 putative transport protein YP_001833291.1 KEGG: mex:Mext_2418 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001833292.1 KEGG: mex:Mext_2417 ATP-dependent Clp protease, ATP-binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: AAA ATPase central domain protein; zinc finger C4 domain protein; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001833293.1 PFAM: peptidase S14 ClpP; KEGG: bcs:BCAN_A1128 ATP-dependent Clp protease proteolytic subunit YP_001833294.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001833295.1 PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: mex:Mext_2414 multicopper oxidase type 3 YP_001833296.1 PFAM: Putative ParB-like nuclease; KEGG: bbt:BBta_3524 hypothetical protein YP_001833297.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: azc:AZC_3546 hypothetical protein YP_001833298.1 PFAM: lipolytic protein G-D-S-L family; KEGG: mex:Mext_0988 hypothetical protein YP_001833299.1 KEGG: mex:Mext_0989 OpgC protein YP_001833300.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: rpc:RPC_2388 protein of unknown function UPF0031 YP_001833301.1 TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: rpa:RPA2669 hypothetical protein YP_001833302.1 PFAM: Invasion associated locus B family protein; KEGG: mex:Mext_3384 invasion associated locus B family protein YP_001833303.1 PFAM: extracellular solute-binding protein family 5; KEGG: bov:BOV_A0542 peptide ABC transporter, periplasmic peptide-binding protein YP_001833304.1 PFAM: DSBA oxidoreductase; KEGG: mlo:mlr0515 similar to FrnE protein YP_001833305.1 PFAM: alpha/beta hydrolase fold; PHB de-polymerase domain protein; KEGG: bvi:Bcep1808_5356 PHB de-polymerase domain protein YP_001833306.1 KEGG: rle:RL1717 putative lactoylglutathione lyase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001833307.1 KEGG: mex:Mext_4794 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_001833308.1 PFAM: methylmalonyl-CoA mutase; KEGG: bbt:BBta_3023 methylmalonyl-CoA mutase small subunit (MCM-beta) YP_001833309.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pde:Pden_5103 poly-beta-hydroxybutyrate polymerase domain protein YP_001833310.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: azc:AZC_2420 phosphate acetyl/butyryltransferase family protein YP_001833311.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4377 magnesium-translocating P-type ATPase YP_001833312.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: noc:Noc_2717 putative phosphoketolase YP_001833313.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: bcs:BCAN_B0923 RNA binding S1 domain protein YP_001833314.1 PFAM: sulfatase; KEGG: xau:Xaut_2420 sulfatase YP_001833316.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: gdi:GDI0682 putative transcriptional regulator, GntR family YP_001833317.1 PFAM: MOFRL domain protein; KEGG: gbe:GbCGDNIH1_0364 glycerate dehydrogenase YP_001833318.1 PFAM: major facilitator superfamily MFS_1; KEGG: gdi:GDI0681 putative glucarate transporter YP_001833319.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: gdi:GDI0680 putative acyl-CoA transferase YP_001833320.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gdi:GDI0679 putative 3-hydroxybutyryl-CoA dehydratase YP_001833321.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bch:Bcen2424_4927 antibiotic biosynthesis monooxygenase YP_001833322.1 PFAM: regulatory protein MarR; KEGG: rru:Rru_A1441 transcriptional regulator, MarR family YP_001833323.1 KEGG: nar:Saro_3404 hypothetical protein YP_001833324.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: atc:AGR_L_281 hypothetical protein YP_001833325.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: smd:Smed_4035 GAF modulated sigma54 specific transcriptional regulator, fis family YP_001833326.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; KEGG: cko:CKO_01537 hypothetical protein YP_001833327.1 PFAM: UspA domain protein; KEGG: nha:Nham_1935 UspA YP_001833328.1 KEGG: mlo:mll6593 hypothetical protein YP_001833329.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rpb:RPB_3686 cytochrome c biogenesis protein, transmembrane region YP_001833330.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001833331.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001833332.1 TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein; KEGG: bra:BRADO5823 ATP-dependent DNA ligase YP_001833333.1 TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: xau:Xaut_4365 DNA ligase D YP_001833334.1 KEGG: mex:Mext_1412 hypothetical protein YP_001833335.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpa:RPA1915 two-component transcriptional regulator FeuP, winged helix family YP_001833336.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mex:Mext_1409 ATP-binding region ATPase domain protein YP_001833337.1 KEGG: azc:AZC_1132 cytochrome c-type biogenesis protein; TIGRFAM: cytochrome c-type biogenesis protein CcmI; PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001833338.1 PFAM: CcmE/CycJ protein; KEGG: azc:AZC_1133 cytochrome c-type biogenesis protein YP_001833339.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: rpd:RPD_2003 cytochrome c-type biogenesis protein CcmF YP_001833340.1 PFAM: cytochrome C biogenesis protein; KEGG: rpb:RPB_3447 cytochrome c biogenesis protein YP_001833341.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rle:RL3183 putative transmembrane protein YP_001833342.1 KEGG: rpe:RPE_1939 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001833343.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_0329 response regulator receiver YP_001833344.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mex:Mext_0328 ATP-binding region ATPase domain protein YP_001833345.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: mex:Mext_0326 (glutamate--ammonia-ligase) adenylyltransferase YP_001833346.1 KEGG: mxa:MXAN_5387 hypothetical protein YP_001833347.1 PFAM: sodium:dicarboxylate symporter; KEGG: bra:BRADO2301 C4-dicarboxylate transport protein YP_001833348.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: xau:Xaut_4315 excinuclease ABC, A subunit YP_001833349.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_001833351.1 KEGG: azc:AZC_1792 hypothetical protein YP_001833352.1 PFAM: protein of unknown function DUF1328; KEGG: atc:AGR_L_805 hypothetical protein YP_001833353.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: mex:Mext_0897 4-hydroxybenzoate polyprenyl transferase YP_001833354.1 KEGG: xau:Xaut_1487 hypothetical protein YP_001833355.1 PFAM: protein of unknown function DUF558; KEGG: mex:Mext_0899 protein of unknown function DUF558 YP_001833356.1 KEGG: rpe:RPE_2414 hypothetical protein YP_001833357.1 KEGG: xau:Xaut_4204 glutamate--cysteine ligase; TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GCS2 YP_001833358.1 KEGG: mlo:mll6900 hypothetical protein YP_001833359.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: azc:AZC_2963 multi antimicrobial extrusion protein YP_001833361.1 PFAM: SNARE associated Golgi protein; KEGG: mex:Mext_4503 SNARE associated Golgi protein YP_001833362.1 PFAM: SNARE associated Golgi protein; KEGG: mex:Mext_4503 SNARE associated Golgi protein YP_001833363.1 KEGG: bcs:BCAN_A0113 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001833364.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A3402 sulfate ABC transporter, permease protein CysW YP_001833365.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00258 probable sulfate uptake ABC transporter, permease protein YP_001833366.1 KEGG: bmt:BSUIS_A0181 hypothetical protein YP_001833367.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: oan:Oant_0190 sulfite reductase (ferredoxin) YP_001833368.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sil:SPO2635 phosphoadenosine phosphosulfate reductase YP_001833369.1 PFAM: conserved hypothetical protein; KEGG: ccr:CC_1120 hypothetical protein YP_001833370.1 PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: xau:Xaut_1265 protein of unknown function zinc metallopeptidase putative YP_001833371.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pfo:Pfl_3712 cupin region YP_001833372.1 KEGG: ana:all2748 hypothetical protein YP_001833373.1 PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein YP_001833374.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_3561 putative acetyltransferase YP_001833375.1 KEGG: pla:Plav_1991 hypothetical protein YP_001833376.1 PFAM: regulatory protein TetR; KEGG: nwi:Nwi_3052 transcriptional regulatory protein, TetR family YP_001833377.1 KEGG: nwi:Nwi_3052 transcriptional regulatory protein, TetR family YP_001833380.1 KEGG: rci:LRC395 hypothetical protein YP_001833381.1 PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein YP_001833382.1 KEGG: mex:Mext_1008 hypothetical protein YP_001833383.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cak:Caul_0180 GCN5-related N-acetyltransferase YP_001833384.1 KEGG: bja:bll2513 hypothetical protein YP_001833385.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: xau:Xaut_2101 activator of HSP90 ATPase 1 family protein YP_001833386.1 PFAM: HupE/UreJ protein; KEGG: xau:Xaut_2188 HupE/UreJ protein YP_001833387.1 KEGG: mex:Mext_3635 molybdate ABC transporter, ATPase subunit; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase YP_001833388.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_3633 molybdate ABC transporter, inner membrane subunit YP_001833389.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_C_4642 molybdate-binding periplasmic protein YP_001833390.1 PFAM: type IV pilus assembly PilZ; KEGG: bmf:BAB2_1083 hypothetical protein YP_001833391.1 PFAM: protein of unknown function DUF892; KEGG: xau:Xaut_3218 protein of unknown function DUF892 YP_001833392.1 PFAM: CsbD family protein; KEGG: rpa:RPA4217 hypothetical protein YP_001833394.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: mag:amb1842 beta-glucosidase-related glycosidase YP_001833396.1 PFAM: porin; KEGG: oan:Oant_0133 porin YP_001833397.1 KEGG: azc:AZC_1254 putative 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001833398.1 PFAM: aminodeoxychorismate lyase; KEGG: mex:Mext_0560 aminodeoxychorismate lyase YP_001833399.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: xau:Xaut_3133 beta-ketoacyl synthase YP_001833400.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: mes:Meso_1767 acyl carrier protein YP_001833401.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: rpc:RPC_2300 3-oxoacyl-(acyl-carrier-protein) reductase YP_001833402.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: rpd:RPD_2983 malonyl CoA-acyl carrier protein transacylase YP_001833403.1 KEGG: bbt:BBta_7578 hypothetical protein YP_001833404.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc3069 putative transporter transmembrane protein YP_001833405.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001833406.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001833407.1 KEGG: rpd:RPD_2987 hypothetical protein YP_001833408.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001833409.1 KEGG: mex:Mext_3938 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase YP_001833410.1 KEGG: mex:Mext_3937 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_001833411.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001833412.1 PFAM: Colicin V production protein; KEGG: rpd:RPD_2996 colicin V production protein YP_001833413.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001833414.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_3931 short-chain dehydrogenase/reductase SDR YP_001833415.1 PFAM: AAA-4 family protein; KEGG: scl:sce6624 hypothetical protein YP_001833416.1 KEGG: fal:FRAAL3987 putative ATP/GTP-binding protein YP_001833417.1 KEGG: atc:AGR_L_450 hypothetical protein YP_001833419.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001833420.1 KEGG: rpe:RPE_3347 hypothetical protein YP_001833421.1 PFAM: regulatory protein MarR; KEGG: bja:blr3851 transcriptional regulatory protein YP_001833422.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: azc:AZC_1076 hypothetical protein YP_001833423.1 PFAM: protein of unknown function DUF1656; KEGG: rme:Rmet_4792 protein of unknown function DUF1656 YP_001833424.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bov:BOV_A0706 HlyD family secretion protein YP_001833426.1 KEGG: bra:BRADO1841 hypothetical protein YP_001833427.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: nha:Nham_1234 aquaporin Z YP_001833428.1 PFAM: periplasmic binding protein; KEGG: sfu:Sfum_3702 periplasmic binding protein YP_001833429.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gvi:glr0349 ferrichrome-iron receptor YP_001833430.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nha:Nham_0955 ABC transporter related YP_001833431.1 PFAM: transport system permease protein; KEGG: nha:Nham_0954 transport system permease protein YP_001833432.1 PFAM: periplasmic binding protein; KEGG: sfu:Sfum_3702 periplasmic binding protein YP_001833433.1 KEGG: mca:MCA1565 protozoan/cyanobacterial globin family protein YP_001833434.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bmu:Bmul_1768 antibiotic biosynthesis monooxygenase YP_001833435.1 PFAM: ribonuclease H; KEGG: azc:AZC_1466 ribonuclease H YP_001833436.1 KEGG: xau:Xaut_2356 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase YP_001833437.1 KEGG: mex:Mext_3071 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_001833438.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001833439.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bra:BRADO3995 peptidyl prolyl cis-trans isomerase (rotamase B) YP_001833440.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH03365 probable short-chain alcohol dehydrogenase protein YP_001833441.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mlr4907 transcriptional regulator (AraC/XylS family) YP_001833442.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bte:BTH_II0209 ribose ABC transporter, periplasmic ribose-binding protein YP_001833443.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mlo:mlr4915 xylitol (sorbitol) dehydrogenase YP_001833444.1 PFAM: protein of unknown function DUF336; KEGG: cak:Caul_1764 protein of unknown function DUF336 YP_001833445.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mex:Mext_4570 peptidyl-prolyl cis-trans isomerase cyclophilin type YP_001833446.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001833447.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbt:BBta_5550 putative thioredoxin reductase, FAD/NAD(P)-binding YP_001833448.1 PFAM: ferredoxin; KEGG: rpa:RPA3956 ferredoxin YP_001833449.1 PFAM: Hpt domain protein; KEGG: sme:SMc00191 hypothetical protein YP_001833450.1 KEGG: rpa:RPA3958 hypothetical protein YP_001833451.1 KEGG: acr:Acry_0749 hypothetical protein YP_001833452.1 PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: mex:Mext_0941 N-acetylmuramoyl-L-alanine amidase family 2 YP_001833453.1 KEGG: bbt:BBta_2161 hypothetical protein YP_001833456.1 PFAM: regulatory protein TetR; KEGG: acr:Acry_3101 transcriptional regulator, TetR family YP_001833457.1 PFAM: Glutathione S-transferase domain; KEGG: mag:amb2655 glutathione S-transferase YP_001833458.1 PFAM: Glutathione S-transferase domain; KEGG: acr:Acry_3099 glutathione S-transferase, N-terminal domain YP_001833460.1 KEGG: dra:DR_1169 hypothetical protein YP_001833461.1 KEGG: pca:Pcar_0522 ATPase, AAA superfamily YP_001833463.1 KEGG: azc:AZC_1023 hypothetical protein YP_001833464.1 PFAM: Na+/solute symporter; KEGG: bja:bll5890 monocarboxylic acid permease YP_001833465.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02834 probable acetyltransferase protein YP_001833466.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bbt:BBta_3302 putative aliphatic sulfonates-binding protein precursor (SsuA protein) YP_001833467.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bja:blr0943 hypothetical protein YP_001833468.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001833470.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: cak:Caul_4624 adenylate cyclase YP_001833471.1 KEGG: aba:Acid345_1413 hypothetical protein YP_001833473.1 KEGG: nwi:Nwi_0593 hypothetical protein YP_001833475.1 KEGG: gdi:GDI1241 putative sugar-proton symporter; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1 YP_001833476.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: azc:AZC_2390 pseudouridine synthase YP_001833477.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pnu:Pnuc_1328 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_001833478.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: xau:Xaut_3093 putative methyltransferase YP_001833479.1 KEGG: bra:BRADO1847 hypothetical protein YP_001833480.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bra:BRADO4157 putative TonB dependent receptor YP_001833481.1 KEGG: rpb:RPB_3553 hypothetical protein YP_001833482.1 PFAM: electron transport protein SCO1/SenC; KEGG: mes:Meso_1992 electron transport protein SCO1/SenC YP_001833483.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mex:Mext_1070 beta-lactamase domain protein YP_001833484.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: mes:Meso_1036 biotin--acetyl-CoA-carboxylase ligase YP_001833485.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bra:BRADO4171 NADH dehydrogenase subunit N YP_001833486.1 KEGG: xau:Xaut_4621 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001833487.1 KEGG: mex:Mext_1074 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_001833488.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: smd:Smed_0900 NADH-ubiquinone oxidoreductase chain 4L YP_001833489.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: nwi:Nwi_1878 NADH dehydrogenase subunit J YP_001833490.1 Catalyzes the transfer of electrons from NADH to quinone YP_001833491.1 Catalyzes the transfer of electrons from NADH to quinone YP_001833492.1 Catalyzes the transfer of electrons from NADH to quinone YP_001833493.1 KEGG: rpc:RPC_2139 hypothetical protein YP_001833494.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_001833495.1 KEGG: xau:Xaut_4629 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_001833496.1 KEGG: xau:Xaut_4630 NADH dehydrogenase I, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa YP_001833497.1 KEGG: xau:Xaut_4631 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_001833498.1 KEGG: mex:Mext_1084 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_001833499.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: mex:Mext_1085 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_001833500.1 KEGG: bbt:BBta_5203 hypothetical protein YP_001833501.1 KEGG: bra:BRADO5430 hypothetical protein YP_001833502.1 KEGG: bra:BRADO5401 conserved hypothetical protein (TPR repeat) YP_001833503.1 KEGG: mex:Mext_2601 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_001833504.1 KEGG: mex:Mext_0531 hypothetical protein YP_001833505.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001833506.1 PFAM: protein of unknown function DUF1328; KEGG: mes:Meso_3110 protein of unknown function DUF1328 YP_001833507.1 KEGG: azc:AZC_1593 hypothetical protein YP_001833508.1 PFAM: Phosphoglycerate mutase; KEGG: azc:AZC_1661 phosphohistidine phosphatase YP_001833509.1 KEGG: mex:Mext_4626 hypothetical protein YP_001833510.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: rpc:RPC_4270 protein of unknown function DUF463, YcjX-like protein YP_001833511.1 PFAM: conserved hypothetical protein; KEGG: mes:Meso_1416 conserved hypothetical protein 1620 YP_001833512.1 PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_3072 transcriptional regulator, XRE family YP_001833513.1 KEGG: rpc:RPC_3073 plasmid stabilization system YP_001833514.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: dac:Daci_3048 Mg2 transporter protein CorA family protein YP_001833515.1 KEGG: rpe:RPE_3533 hypothetical protein YP_001833516.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001833517.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: rpe:RPE_2189 acetolactate synthase, small subunit YP_001833518.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: xau:Xaut_1488 acetolactate synthase, large subunit, biosynthetic type YP_001833519.1 PFAM: helix-turn-helix domain protein; KEGG: btr:Btr_0553 hypothetical protein YP_001833521.1 KEGG: oan:Oant_1534 hypothetical protein YP_001833522.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: amr:AM1_1199 thiopurine S-methyltransferase, putative YP_001833523.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sme:SMc00385 hypothetical protein YP_001833524.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present YP_001833525.1 TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: nwi:Nwi_1912 putative manganese transport protein MntH YP_001833526.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_4267 ABC transporter related YP_001833527.1 KEGG: gox:GOX0651 hypothetical protein YP_001833528.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bcs:BCAN_B0712 thioredoxin peroxidase 2 YP_001833529.1 TIGRFAM: alkylhydroperoxidase, AhpD family; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rpe:RPE_4514 alkylhydroperoxidase, AhpD family YP_001833530.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xfa:XF1532 oxidative stress transcriptional regulator YP_001833531.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001833532.1 PFAM: inositol monophosphatase; KEGG: saq:Sare_0440 inositol monophosphatase YP_001833533.1 PFAM: major facilitator superfamily MFS_1; KEGG: sus:Acid_4766 major facilitator superfamily MFS_1 YP_001833534.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_3195 ABC transporter related YP_001833535.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpe:RPE_3194 binding-protein-dependent transport systems inner membrane component YP_001833536.1 KEGG: rpe:RPE_3192 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3 YP_001833537.1 PFAM: CBS domain containing protein; KEGG: mes:Meso_2788 CBS domain containing protein YP_001833538.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: mex:Mext_2275 GTP-binding protein Era YP_001833539.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: xau:Xaut_3881 ribonuclease III YP_001833540.1 KEGG: mex:Mext_2273 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001833541.1 KEGG: sme:SMc02654 4'-phosphopantetheinyl transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase YP_001833542.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001833543.1 KEGG: mex:Mext_3196 RelA/SpoT family protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001833544.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001833545.1 PFAM: protein of unknown function DUF88; KEGG: mex:Mext_3193 protein of unknown function DUF88 YP_001833546.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: nha:Nham_2258 uracil-DNA glycosylase superfamily YP_001833547.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: xau:Xaut_4353 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family YP_001833548.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:bll5081 putative multidrug resistance protein YP_001833549.1 KEGG: nha:Nham_0878 hypothetical protein YP_001833550.1 KEGG: bja:blr3456 hypothetical protein YP_001833551.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: bch:Bcen2424_4872 phosphate acetyltransferase YP_001833552.1 PFAM: peptidase M48 Ste24p; KEGG: mfa:Mfla_1474 STE24 endopeptidase YP_001833553.1 PFAM: NLPA lipoprotein; KEGG: bmu:Bmul_3391 NlpA lipoprotein YP_001833554.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_3692 putative ABC transporter permease protein YP_001833555.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_3691 ABC transporter ATP-binding protein YP_001833557.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: atc:AGR_L_830 mannitol 2-dehydrogenase (MDH) YP_001833558.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: atc:AGR_L_3278 ATP-binding transport protein SmoK (POLK) YP_001833559.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4216 putative mannitol transmembrane permease component of ABC transporter YP_001833560.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4217 putative mannitol transmembrane permease component of ABC transporter YP_001833561.1 PFAM: extracellular solute-binding protein family 1; KEGG: rle:RL4218 putative mannitol-binding component of ABC transporter YP_001833562.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: ret:RHE_CH03649 xylulokinase protein YP_001833563.1 PFAM: AIG2 family protein; KEGG: cyb:CYB_1529 hypothetical protein YP_001833564.1 TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; KEGG: ret:RHE_CH00244 hypothetical protein YP_001833566.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: cak:Caul_2635 transglutaminase domain protein YP_001833567.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rpa:RPA3754 transglutaminase-like domain YP_001833568.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpc:RPC_1679 transcriptional regulator, LysR family YP_001833569.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: pfo:Pfl_1664 C4-dicarboxylate transporter/malic acid transport protein YP_001833570.1 SMART: helix-turn-helix domain protein; KEGG: bja:bll6346 hypothetical protein YP_001833571.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rle:pRL110297 hydrogenase 4 subunit B YP_001833572.1 KEGG: azc:AZC_4359 NADH dehydrogenase YP_001833573.1 KEGG: bja:blr6341 hypothetical protein YP_001833574.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rle:pRL110294 hydrogenase 4 subunit F YP_001833575.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: rle:pRL110293 putative formate hydrogenlyase subunit 5 precursor YP_001833576.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: xau:Xaut_0171 NADH ubiquinone oxidoreductase 20 kDa subunit YP_001833577.1 PFAM: integrase family protein; KEGG: xau:Xaut_4792 integrase family protein YP_001833578.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: oan:Oant_0293 periplasmic binding protein/LacI transcriptional regulator YP_001833579.1 PFAM: PfkB domain protein; KEGG: oan:Oant_0289 PfkB domain protein YP_001833580.1 PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: oan:Oant_0288 tagatose-6-phosphate kinase YP_001833581.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bra:BRADO3430 putative haloacid dehalogenase-like hydrolase family protein YP_001833582.1 KEGG: gdi:GDI1241 putative sugar-proton symporter; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1 YP_001833583.1 KEGG: ret:RHE_CH02644 hypothetical protein YP_001833584.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ret:RHE_CH02643 ferredoxin reductase protein YP_001833585.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH02642 rhizopine ABC transporter, substrate-binding protein YP_001833586.1 TIGRFAM: Rieske [2Fe-2S] domain protein, MocE subfamily; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sme:SMa2053 MocE-like protein YP_001833587.1 PFAM: fatty acid hydroxylase; KEGG: ret:RHE_CH02640 probable desaturase protein YP_001833588.1 PFAM: regulatory protein LacI; KEGG: sme:SMa2049 putative LacI-family transcription regulator YP_001833589.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbt:BBta_5967 putative transcriptional regulatory protein AraC/XylS family YP_001833590.1 KEGG: pha:PSHAb0115 putative enzyme protein YP_001833591.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gvi:glr4425 glutathione dependent formaldehyde dehydrogenase YP_001833592.1 KEGG: bmu:Bmul_0694 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase YP_001833593.1 KEGG: bbt:BBta_4248 hypothetical protein YP_001833594.1 KEGG: pde:Pden_1062 flavin reductase domain protein, FMN-binding YP_001833595.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gox:GOX2105 transcriptional regulator YP_001833596.1 PFAM: major facilitator superfamily MFS_1; KEGG: gox:GOX2104 putative transport protein YP_001833597.1 PFAM: secretion protein HlyD family protein; KEGG: gdi:GDI0236 putative secretion protein, HlyD-family YP_001833598.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gdi:GDI0997 putative outer membrane protein OprJ YP_001833599.1 PFAM: transcriptional regulator PadR family protein; KEGG: rru:Rru_A3441 transcriptional regulator, PadR-like family YP_001833600.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001833601.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gvi:gll1228 probable short-chain dehydrogenase YP_001833602.1 Hsp31 stabilizes early unfolding protein intermediates under severe heat stress YP_001833603.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: pfo:Pfl_2247 transcriptional regulator, LuxR family YP_001833604.1 KEGG: reh:H16_B1343 short-chain dehydrogenase of various substrate specificities YP_001833605.1 PFAM: Na+/Picotransporter; KEGG: sil:SPO0209 Na/Pi-cotransporter family protein YP_001833606.1 PFAM: conserved hypothetical protein; KEGG: ccr:CC_1036 hypothetical protein YP_001833607.1 KEGG: mpt:Mpe_A0156 hypothetical protein YP_001833608.1 KEGG: gdi:GDI0537 hypothetical protein YP_001833609.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: oih:OB3053 UDP-glucose 4-epimerase YP_001833610.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_0960 iron (III) ABC transporter, ATP-binding protein YP_001833611.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sun:SUN_0959 iron (III) ABC transporter, permease YP_001833612.1 PFAM: extracellular solute-binding protein family 1; KEGG: sun:SUN_0958 iron (III) ABC transporter, substrate-binding protein YP_001833613.1 KEGG: pol:Bpro_2501 hypothetical protein YP_001833614.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: sme:SMc00808 putative chromate transport protein YP_001833615.1 KEGG: dvu:DVUA0094 ChrB protein YP_001833616.1 KEGG: bch:Bcen2424_5953 hypothetical protein YP_001833617.1 KEGG: nha:Nham_1872 hypothetical protein YP_001833618.1 KEGG: rme:Rmet_6198 hypothetical protein YP_001833619.1 PFAM: protein of unknown function LppY and LpqO; KEGG: aba:Acid345_3442 protein of unknown function LppY and LpqO YP_001833620.1 PFAM: manganese and iron superoxide dismutase; KEGG: bja:bll7559 probable Fe/Mn superoxide dismutase YP_001833621.1 PFAM: amino acid permease-associated region; KEGG: sen:SACE_3292 amino acid permease-associated region YP_001833622.1 KEGG: rpe:RPE_0575 hypothetical protein YP_001833623.1 KEGG: ret:RHE_PE00215 putative nickel ABC transporter, permease protein YP_001833624.1 PFAM: MaoC domain protein dehydratase; KEGG: ypi:YpsIP31758_2157 MaoC domain protein YP_001833625.1 PFAM: HpcH/HpaI aldolase; KEGG: yps:YPTB1926 putative citrate lyase beta chain YP_001833626.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_5395 major facilitator superfamily MFS_1 YP_001833627.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bcs:BCAN_B0166 L-carnitine dehydratase/bile acid-inducible protein F YP_001833628.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_3598 LysR substrate-binding YP_001833629.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rle:pRL90096 hypothetical protein YP_001833630.1 PFAM: PilT protein domain protein; KEGG: sme:SMa0453 Yle homolog, A. tumefaciens YP_001833631.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3423 transcriptional regulator, LysR family YP_001833632.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: bpt:Bpet3651 putative malate dehydrogenase YP_001833633.1 PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4805 major facilitator superfamily MFS_1 YP_001833634.1 KEGG: bld:BLi04142 YkgB YP_001833635.1 PFAM: porin; KEGG: mex:Mext_3186 porin YP_001833636.1 Converts isocitrate to alpha ketoglutarate YP_001833637.1 PFAM: extracellular solute-binding protein family 5; KEGG: atc:AGR_L_2772 probable oligopeptide binding protein AppA YP_001833638.1 PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_2585 putative ABC transporter, substrate binding subunit YP_001833639.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2660 ABC transporter permease protein YP_001833640.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2661 ABC transporter permease protein YP_001833641.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_2524 putative acyl-CoA dehydrogenase YP_001833642.1 PFAM: Rhodanese domain protein; KEGG: bbt:BBta_2586 putative thiosulfate sulfurtransferase YP_001833643.1 KEGG: sme:SMa2081 probable ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001833644.1 KEGG: azc:AZC_2663 oligopeptide/dipeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001833645.1 PFAM: TonB-dependent receptor; KEGG: pfl:PFL_0213 TonB dependent receptor, putative YP_001833646.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pae:PA2335 probable TonB-dependent receptor YP_001833647.1 KEGG: mms:mma_0258 nitrilotriacetate monooxygenase component A YP_001833648.1 KEGG: nwi:Nwi_2917 integrase, catalytic region YP_001833649.1 PFAM: regulatory protein TetR; KEGG: mlo:mlr5353 transcriptional regulator YP_001833651.1 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP. YP_001833652.1 PFAM: acriflavin resistance protein; KEGG: ret:RHE_CH00528 probable cation/multidrug efflux transport protein YP_001833653.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sme:SMa1885 putative membrane efflux protein YP_001833654.1 PFAM: regulatory protein TetR; KEGG: sme:SMa1887 putative transcriptional regulator YP_001833655.1 PFAM: alpha/beta hydrolase fold; KEGG: ath:AT4G36530 hydrolase, alpha/beta fold family protein YP_001833656.1 KEGG: pcr:Pcryo_1252 hypothetical protein YP_001833657.1 KEGG: bra:BRADO4277 nitrilotriacetate monooxygenase component A (NtA monooxygenase component A) (NtA-MO A) YP_001833658.1 PFAM: aldo/keto reductase; KEGG: azc:AZC_2664 putative oxido-reductase YP_001833659.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rle:pRL110607 putative transposase family protein YP_001833660.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: mlo:mlr5805 cytochrome c peroxidase YP_001833661.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1718 major facilitator superfamily (MFS) transporter YP_001833662.1 KEGG: bxe:Bxe_A1720 hypothetical protein YP_001833663.1 KEGG: bxe:Bxe_A1719 hypothetical protein YP_001833664.1 KEGG: bxe:Bxe_A1722 predicted metal-dependent hydrolase YP_001833665.1 PFAM: regulatory protein MerR; KEGG: cak:Caul_0483 DNA binding domain protein, excisionase family YP_001833666.1 PFAM: protein of unknown function DUF1302; KEGG: cvi:CV_2103 hypothetical protein YP_001833667.1 KEGG: rle:pRL70138 putative insertion sequence transposase-like protein YP_001833668.1 KEGG: sil:SPO1864 hypothetical protein YP_001833669.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_1284 short-chain dehydrogenase/reductase SDR YP_001833670.1 KEGG: xau:Xaut_1285 heme oxygenase family YP_001833671.1 PFAM: AMP-dependent synthetase and ligase; KEGG: xau:Xaut_1286 AMP-dependent synthetase and ligase YP_001833672.1 KEGG: xau:Xaut_1287 hypothetical protein YP_001833673.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_4997 DNA-binding response regulator YP_001833674.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_4996 sensor histidine kinase YP_001833676.1 PFAM: VacJ family lipoprotein; KEGG: ppg:PputGB1_1970 VacJ family lipoprotein YP_001833677.1 KEGG: mex:Mext_2011 hypothetical protein YP_001833678.1 KEGG: xau:Xaut_1283 tetratricopeptide TPR_2 repeat protein YP_001833679.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: xau:Xaut_1282 methyltransferase type 11 YP_001833680.1 KEGG: bur:Bcep18194_A5701 hypothetical protein YP_001833681.1 KEGG: psa:PST_1628 hypothetical protein YP_001833682.1 KEGG: xau:Xaut_1283 tetratricopeptide TPR_2 repeat protein YP_001833683.1 PFAM: aminotransferase class-III; KEGG: sus:Acid_1357 aminotransferase class-III YP_001833684.1 PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: aba:Acid345_3105 chalcone and stilbene synthases-like YP_001833685.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; KEGG: sus:Acid_1355 monooxygenase, FAD-binding YP_001833686.1 KEGG: bcs:BCAN_A0546 hypothetical protein YP_001833688.1 KEGG: bte:BTH_I2760 hypothetical protein YP_001833689.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A1769 transcriptional regulator, AraC family YP_001833690.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: bch:Bcen2424_4647 transcriptional regulator, AraC family YP_001833691.1 PFAM: aldo/keto reductase; KEGG: bur:Bcep18194_C7134 aldo/keto reductase YP_001833692.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bxe:Bxe_A1770 putative dyhydroflavanol-4-reductase YP_001833693.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bxe:Bxe_A1771 putative nucleoside-diphosphate-sugar epimerase YP_001833694.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: bxe:Bxe_A1772 putative esterase YP_001833695.1 KEGG: sil:SPO2406 ISSpo6, transposase orf A YP_001833696.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mpt:Mpe_A3662 putative AraC-type DNA-binding domain-containing protein YP_001833697.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: mag:amb4454 L-lactate dehydrogenase and related alpha-hydroxy acid dehydrogenase YP_001833698.1 PFAM: ThiJ/PfpI domain protein; KEGG: vvy:VV0154 hypothetical protein YP_001833699.1 PFAM: Luciferase-like monooxygenase; KEGG: swi:Swit_4260 luciferase family protein YP_001833700.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: bte:BTH_II2298 flavin reductase domain protein YP_001833701.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bpt:Bpet3943 2-hydroxyhepta-2,4-diene-1,7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase YP_001833702.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: rle:RL2726 putative riboflavin biosynthesis protein YP_001833703.1 KEGG: xau:Xaut_1352 extracellular ligand-binding receptor YP_001833704.1 KEGG: xau:Xaut_4179 hypothetical protein YP_001833705.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eba:ebA303 alcohol dehydrogenase YP_001833706.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4134 major facilitator superfamily MFS_1 YP_001833707.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pmy:Pmen_3209 transcriptional regulator, LysR family YP_001833708.1 PFAM: peptidase M10A and M12B matrixin and adamalysin; SMART: peptidase metallopeptidase; KEGG: bvi:Bcep1808_6083 peptidase M10A and M12B, matrixin and adamalysin YP_001833709.1 KEGG: mex:Mext_1948 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_001833710.1 PFAM: regulatory protein LysR; TOBE domain protein; KEGG: azc:AZC_1791 molybdenum-binding protein YP_001833712.1 KEGG: nwi:Nwi_1075 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_001833713.1 PFAM: glycoside hydrolase family 10; glycosyl transferase group 1; KEGG: syf:Synpcc7942_1400 endo-1,4-beta-xylanase YP_001833714.1 KEGG: bja:bll2362 succinoglycan biosynthesis transport protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_001833715.1 PFAM: glycosyl transferase group 1; KEGG: gvi:gll2195 probable glycosyl transferase YP_001833716.1 KEGG: mgm:Mmc1_1231 hypothetical protein YP_001833717.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: jan:Jann_4258 glycosyl transferase, WecB/TagA/CpsF family YP_001833718.1 PFAM: glycosyl transferase group 1; KEGG: cak:Caul_2119 glycosyl transferase group 1 YP_001833719.1 PFAM: acyltransferase 3; KEGG: mmr:Mmar10_0197 acyltransferase 3 YP_001833720.1 PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_2481 polysaccharide biosynthesis protein YP_001833721.1 PFAM: acyltransferase 3; KEGG: psa:PST_2375 predicted membrane protein YP_001833722.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ccr:CC_2378 NAD-dependent epimerase/dehydratase family protein YP_001833723.1 KEGG: mlo:mll2088 hypothetical protein YP_001833724.1 KEGG: rpa:RPA3354 hypothetical protein YP_001833726.1 PFAM: integrase family protein; KEGG: oan:Oant_0882 phage integrase family protein YP_001833727.1 PFAM: YcfA family protein; KEGG: nha:Nham_0566 YcfA-like YP_001833728.1 PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0150; KEGG: nha:Nham_0567 protein of unknown function UPF0150 YP_001833732.1 KEGG: nar:Saro_2712 hypothetical protein YP_001833733.1 PFAM: N-6 DNA methylase; KEGG: dno:DNO_0223 type I restriction-modification system, M subunit YP_001833734.1 PFAM: restriction modification system DNA specificity domain; KEGG: saq:Sare_2852 restriction endonuclease S subunits-like protein YP_001833735.1 KEGG: sbm:Shew185_2197 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases YP_001833736.1 PFAM: protein of unknown function DUF45; KEGG: mma:MM_2291 zinc metalloprotease YP_001833737.1 KEGG: ret:RHE_PD00007 hypothetical protein YP_001833738.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PD00006 probable ATPase (ATP-binding) protein YP_001833740.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: spe:Spro_2413 heavy metal translocating P-type ATPase YP_001833741.1 PFAM: protein of unknown function DUF1234; KEGG: mex:Mext_1786 protein of unknown function DUF1234 YP_001833742.1 KEGG: lbl:LBL_1518 hypothetical protein YP_001833743.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: mex:Mext_0996 adenylosuccinate lyase YP_001833744.1 PFAM: peptidase S58 DmpA; KEGG: rpa:RPA3813 peptidase family T4 YP_001833745.1 PFAM: Lytic transglycosylase catalytic; KEGG: sme:SMc03045 hypothetical protein YP_001833746.1 KEGG: dpo:Dpse_GA17283 GA17283-PA YP_001833747.1 KEGG: mex:Mext_0632 putative chemotaxis protein precursor YP_001833748.1 PFAM: OmpA/MotB domain protein; KEGG: bja:bll6862 flagellar motor protein MotB YP_001833749.1 KEGG: bja:bll6863 hypothetical protein YP_001833750.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001833751.1 PFAM: flagellin domain protein; KEGG: ret:RHE_CH00669 flagellin C protein YP_001833752.1 PFAM: Rhodanese domain protein; KEGG: bja:bll7966 putative thiosulfate sulfurtransferase YP_001833753.1 PFAM: Luciferase-like monooxygenase; KEGG: swi:Swit_2509 alkanesulfonate monooxygenase YP_001833754.1 PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO4286 hypothetical protein YP_001833755.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Patatin; KEGG: xau:Xaut_4913 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001833756.1 converts acetoacetate to acetone and carbon dioxide YP_001833757.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_1887 3-hydroxybutyrate dehydrogenase YP_001833758.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: mex:Mext_0910 cobalamin 5'-phosphate synthase YP_001833759.1 KEGG: rpc:RPC_1349 hypothetical protein YP_001833760.1 PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: mex:Mext_4231 peptidase M23B YP_001833761.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: rpe:RPE_2705 protein-L-isoaspartate O-methyltransferase YP_001833762.1 KEGG: mex:Mext_4233 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_001833763.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001833764.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: bja:bll4749 sec-independent protein translocase protein YP_001833765.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: xau:Xaut_4406 twin-arginine translocation protein, TatB subunit YP_001833766.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_001833767.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: xau:Xaut_4303 putative regulatory protein, FmdB family YP_001833768.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rpd:RPD_2791 chromosome segregation and condensation protein ScpB YP_001833769.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: rpe:RPE_2694 chromosome segregation and condensation protein ScpA YP_001833770.1 PFAM: Sporulation domain protein; KEGG: mex:Mext_3397 sporulation domain protein YP_001833771.1 KEGG: nha:Nham_1758 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase YP_001833772.1 KEGG: mex:Mext_3393 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001833773.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azc:AZC_2808 HesB protein YP_001833774.1 KEGG: mex:Mext_3391 hypothetical protein YP_001833778.1 KEGG: bra:BRADO2754 dihydroxyacid dehydratase (DAD); TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_001833779.1 KEGG: mex:Mext_1120 hypothetical protein YP_001833780.1 KEGG: ret:RHE_CH01335 hypothetical protein YP_001833781.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001833782.1 KEGG: amr:AM1_E0108 hypothetical protein YP_001833784.1 KEGG: xau:Xaut_3172 hypothetical protein YP_001833785.1 KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein YP_001833786.1 KEGG: ngo:NGO0508 hypothetical protein, putative phage associated protein YP_001833787.1 PFAM: conserved hypothetical protein; KEGG: ngo:NGO0507 hypothetical protein, putative phage associated protein YP_001833788.1 KEGG: ngo:NGO0506 hypothetical protein, putative phage associated protein YP_001833789.1 KEGG: rsq:Rsph17025_3714 hypothetical protein YP_001833790.1 KEGG: xau:Xaut_0128 hypothetical protein YP_001833791.1 PFAM: protein of unknown function DUF763; KEGG: bpt:Bpet1643 hypothetical protein YP_001833792.1 PFAM: protein of unknown function DUF343; KEGG: mex:Mext_2253 protein of unknown function DUF343 YP_001833793.1 PFAM: acyl-CoA thioesterase; KEGG: nwi:Nwi_0078 acyl-CoA thioesterase YP_001833794.1 PFAM: nitrogen regulatory protein P-II; KEGG: bja:blr0612 nitrogen regulatory protein PII YP_001833795.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: mex:Mext_2099 ammonium transporter YP_001833796.1 PFAM: phosphoglucose isomerase (PGI); KEGG: smd:Smed_0109 glucose-6-phosphate isomerase YP_001833797.1 KEGG: nha:Nham_2267 tetratricopeptide TPR_2 YP_001833798.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mex:Mext_1234 phosphocarrier, HPr family YP_001833799.1 PFAM: PTS system fructose subfamily IIA component; KEGG: mex:Mext_1235 PTS system fructose subfamily IIA component YP_001833800.1 KEGG: mex:Mext_1236 HPr kinase YP_001833801.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: azc:AZC_4066 histidine kinase YP_001833802.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpa:RPA0358 two-component transcriptional regulator ChvI, winged helix family YP_001833803.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mex:Mext_1239 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_001833804.1 PFAM: Citrate transporter; KEGG: mlo:mlr4884 hypothetical protein YP_001833805.1 KEGG: azc:AZC_4464 DNA polymerase A; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2 YP_001833806.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bbt:BBta_1795 hypothetical protein YP_001833807.1 PFAM: Lytic transglycosylase catalytic; KEGG: sme:SMc01850 hypothetical protein YP_001833808.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: atc:AGR_C_4790 succinate dehydrogenase iron-sulfur protein subunit YP_001833809.1 KEGG: rpe:RPE_0513 hypothetical protein YP_001833810.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001833811.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: bme:BMEI0160 succinate dehydrogenase hydrophobic membrane anchor protein YP_001833812.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: nwi:Nwi_2798 succinate dehydrogenase, cytochrome b subunit YP_001833813.1 PFAM: phospholipase/Carboxylesterase; KEGG: bbt:BBta_3217 hypothetical protein YP_001833814.1 KEGG: dar:Daro_2929 hypothetical protein YP_001833815.1 KEGG: nha:Nham_0883 hypothetical protein YP_001833816.1 KEGG: nha:Nham_0882 hypothetical protein YP_001833817.1 PFAM: Domain of unknown function DUF1929; KEGG: bps:BPSL1707 putative exported oxidase YP_001833818.1 PFAM: glycosyl transferase group 1; KEGG: rde:RD1_3845 glycosyl transferase, group 1 family protein YP_001833819.1 KEGG: sil:SPO0036 hypothetical protein YP_001833820.1 PFAM: glycoside hydrolase family 5; KEGG: amr:AM1_1890 hypothetical protein YP_001833821.1 KEGG: cno:NT01CX_1531 hypothetical protein YP_001833822.1 KEGG: bja:bll2363 hypothetical protein YP_001833823.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bja:bll2362 succinoglycan biosynthesis transport protein YP_001833824.1 KEGG: rsp:RSP_2396 hypothetical protein YP_001833825.1 KEGG: xau:Xaut_3565 polysaccharide biosynthesis protein YP_001833826.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bmt:BSUIS_A0575 oxidoreductase domain protein YP_001833827.1 PFAM: regulatory protein LacI; KEGG: rle:pRL110623 putative transcriptional regulator YP_001833828.1 PFAM: fatty acid desaturase; KEGG: mlo:mlr4998 putative hydrocarbon oxygenase MocD YP_001833829.1 TIGRFAM: Rieske [2Fe-2S] domain protein, MocE subfamily; PFAM: Rieske [2Fe-2S] domain protein; KEGG: smd:Smed_5006 Rieske (2Fe-2S) domain protein, MocE subfamily YP_001833830.1 PFAM: aldo/keto reductase; KEGG: sus:Acid_5923 aldo/keto reductase YP_001833831.1 KEGG: lmo:lmo1968 hypothetical protein YP_001833832.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: atc:AGR_L_2900 putative rhizopine-binding protein precursor YP_001833833.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:RL1417 putative IolH myo-inositol catabolism protein YP_001833834.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit YP_001833835.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_001833836.1 KEGG: bxe:Bxe_A1881 putative H(+)-transporting ATP synthase, gene 1 protein YP_001833837.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_001833838.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_001833839.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: bxe:Bxe_C0044 H+-transporting two-sector ATPase, B/B' subunit YP_001833840.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit YP_001833841.1 PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: bxe:Bxe_C0042 H+-transporting two-sector ATPase, gamma subunit YP_001833842.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_5828 short-chain dehydrogenase/reductase SDR YP_001833843.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: smd:Smed_5829 transcriptional regulator, LysR family YP_001833844.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:RL3225 putative LysR family transcriptional regulator YP_001833845.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rle:RL3226 hypothetical protein YP_001833846.1 PFAM: beta-lactamase domain protein; KEGG: atc:AGR_L_1113 hypothetical protein YP_001833847.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: sme:SMb20864 hypothetical protein YP_001833848.1 PFAM: MscS Mechanosensitive ion channel; KEGG: smd:Smed_5823 MscS mechanosensitive ion channel YP_001833849.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bpt:Bpet3860 probable RF2 family protein YP_001833850.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: xau:Xaut_1982 thioredoxin YP_001833851.1 PFAM: peptidase S16 lon domain protein; KEGG: mex:Mext_2252 peptidase S16 lon domain protein YP_001833853.1 PFAM: PilT protein domain protein; KEGG: rpc:RPC_4151 PilT protein-like YP_001833854.1 KEGG: bxe:Bxe_B1881 plasmid stability protein YP_001833856.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bra:BRADO4942 hypothetical protein; putative CbxX/CfqX family protein (N-term) and peptidase (C-term) YP_001833858.1 KEGG: nha:Nham_3767 hypothetical protein YP_001833859.1 KEGG: acr:Acry_3293 nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein YP_001833860.1 KEGG: nha:Nham_3765 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001833861.1 PFAM: Protein of unknown function DUF1810; KEGG: rru:Rru_A3158 hypothetical protein YP_001833862.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: oan:Oant_4217 chemotaxis MotA protein YP_001833863.1 PFAM: flagellar motor switch protein FliM; KEGG: azc:AZC_0643 flagellar motor switch protein YP_001833864.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: bja:bll6879 probable flagellar motor switch protein YP_001833865.1 PFAM: flagellar motor switch protein FliG; KEGG: azc:AZC_0640 flagellar motor switch protein YP_001833866.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_001833867.1 PFAM: protein of unknown function DUF1217; KEGG: bov:BOV_A0118 hypothetical protein YP_001833868.1 KEGG: rpe:RPE_1147 flagellar basal body rod protein YP_001833869.1 involved in type III protein export during flagellum assembly YP_001833870.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain YP_001833871.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sen:SACE_3360 arginase/agmatinase/formiminoglutamase YP_001833872.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mpt:Mpe_A2115 putative bifunctional arginase/ornithine aminotransferase YP_001833873.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pde:Pden_4957 putative transcriptional regulator, AsnC family YP_001833874.1 KEGG: pfl:PFL_4129 hypothetical protein YP_001833875.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bte:BTH_I2817 oxidoreductase, short-chain dehydrogenase/reductase family YP_001833876.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_L_999 hypothetical protein YP_001833877.1 KEGG: tcr:510807.10 mucin TcMUCII, putative Pfam: Mucin PROSITE: THR_RICH YP_001833878.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mca:MCA1911 heavy metal translocating P-type ATPase YP_001833879.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_001833880.1 PFAM: inner-membrane translocator; KEGG: smd:Smed_4266 monosaccharide-transporting ATPase YP_001833881.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb20713 putative sugar uptake ABC transporter ATP-binding protein YP_001833882.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20712 putative rhizopine uptake ABC transporter periplasmic solute-binding protein precursor YP_001833883.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rsh:Rsph17029_2906 oxidoreductase domain protein YP_001833884.1 PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: bra:BRADO0446 conserved hypothetical protein; putative xylose isomerase-like YP_001833885.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: acr:Acry_2330 oxidoreductase domain protein YP_001833886.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: acr:Acry_2329 inositol 2-dehydrogenase YP_001833887.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: acr:Acry_2328 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001833888.1 PFAM: HpcH/HpaI aldolase; KEGG: acr:Acry_2327 HpcH/HpaI aldolase YP_001833889.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pub:SAR11_0766 succinate-semialdehyde dehydrogenase (NAD(P)) YP_001833890.1 PFAM: protein of unknown function DUF81; KEGG: xau:Xaut_0652 protein of unknown function DUF81 YP_001833891.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: acr:Acry_2326 transcriptional regulator, RpiR family YP_001833892.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ppr:PBPRB0462 hypothetical acetolactate synthase, IolD YP_001833893.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: acr:Acry_2325 xylose isomerase domain protein TIM barrel YP_001833894.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: acr:Acry_2324 short-chain dehydrogenase/reductase SDR YP_001833895.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bra:BRADO1392 ABC transporter; periplasmic subunit, putative sugar-binding protein YP_001833896.1 PFAM: Carbohydrate-selective porin OprB; KEGG: rso:RSp1632 putative porin B precursor outer (glucose porin) transmembrane protein YP_001833897.1 KEGG: bja:bll5176 hypothetical protein YP_001833898.1 PFAM: chromosome segregation and condensation protein ScpB; KEGG: nha:Nham_4583 putative transcriptional regulator YP_001833899.1 PFAM: protein of unknown function DUF1403; KEGG: nha:Nham_4582 protein of unknown function DUF1403 YP_001833900.1 TIGRFAM: conserved hypothetical membrane protein; KEGG: mex:Mext_1457 hypothetical protein YP_001833901.1 KEGG: mex:Mext_1458 protein of unknown function DUF58 YP_001833902.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: azc:AZC_3509 putative methanol dehydrogenase regulator YP_001833903.1 PFAM: protein of unknown function DUF1285; KEGG: bja:blr2466 hypothetical protein YP_001833904.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: azc:AZC_3505 putative poly(A) polymerase YP_001833905.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: mca:MCA0225 Rieske 2Fe-2S family protein YP_001833906.1 KEGG: azc:AZC_1519 putative macrocin-O-methyltransferase domain protein YP_001833907.1 PFAM: acyltransferase 3; KEGG: mxa:MXAN_3238 acyltransferase family protein YP_001833908.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ccr:CC_3525 ferredoxin reductase YP_001833909.1 PFAM: protein of unknown function DUF779; KEGG: gbe:GbCGDNIH1_1023 hypothetical protein YP_001833910.1 PFAM: Aldehyde Dehydrogenase_; KEGG: gbe:GbCGDNIH1_1022 aldehyde dehydrogenase YP_001833911.1 KEGG: nha:Nham_2723 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_001833912.1 TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like YP_001833913.1 KEGG: pen:PSEEN4434 hypothetical protein YP_001833914.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: xau:Xaut_1067 peptidase S8 and S53 subtilisin kexin sedolisin YP_001833915.1 KEGG: gvi:gll4244 unknown protein YP_001833916.1 KEGG: reh:H16_A3602 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001833917.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bmu:Bmul_5161 aldehyde dehydrogenase YP_001833918.1 PFAM: Carbohydrate-selective porin OprB; KEGG: psb:Psyr_1117 carbohydrate-selective porin OprB YP_001833919.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:bll5782 ABC transporter sugar-binding protein YP_001833920.1 PFAM: inner-membrane translocator; KEGG: pin:Ping_2807 inner-membrane translocator YP_001833921.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpd:BURPS668_A0286 ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, ATP-binding protein YP_001833922.1 PFAM: ROK family protein; KEGG: rle:RL0488 putative ROK family transcriptional regulator YP_001833923.1 PFAM: RbsD or FucU transport; KEGG: xau:Xaut_2417 RbsD or FucU transport YP_001833924.1 PFAM: PfkB domain protein; KEGG: xau:Xaut_2416 PfkB domain protein YP_001833925.1 KEGG: azc:AZC_3629 glucose-6-phosphate dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_001833926.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_001833927.1 KEGG: xau:Xaut_1019 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase YP_001833928.1 KEGG: pnu:Pnuc_1366 hypothetical protein YP_001833929.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_001833930.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: bbt:BBta_2068 2-dehydro-3-deoxygalactonokinase YP_001833931.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: jan:Jann_3839 transcriptional regulator, IclR family YP_001833932.1 PFAM: major facilitator superfamily MFS_1; KEGG: rle:pRL110019 putative transmembrane transporter YP_001833933.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_001833934.1 PFAM: PfkB domain protein; KEGG: bra:BRADO1805 ketodeoxygluconokinase YP_001833935.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_3855 efflux transporter, RND family, MFP subunit YP_001833936.1 PFAM: acriflavin resistance protein; KEGG: mex:Mext_3856 acriflavin resistance protein YP_001833937.1 PFAM: protein of unknown function YGGT; KEGG: azc:AZC_3317 hypothetical protein YP_001833938.1 PFAM: regulatory protein TetR; KEGG: atc:AGR_C_478 hypothetical protein YP_001833939.1 KEGG: atc:AGR_C_479 hypothetical protein YP_001833940.1 PFAM: transposase IS3/IS911 family protein; KEGG: acr:Acry_3414 transposase IS3/IS911 family protein YP_001833941.1 PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: rpb:RPB_2557 transcriptional regulator, TetR family YP_001833942.1 KEGG: xau:Xaut_4923 hypothetical protein YP_001833943.1 KEGG: rpe:RPE_3838 hypothetical protein YP_001833944.1 KEGG: rpe:RPE_3839 hypothetical protein YP_001833945.1 PFAM: membrane protein of uknown function UCP014873; KEGG: smd:Smed_0077 membrane protein of uknown function UCP014873 YP_001833946.1 KEGG: ckl:CKL_2871 hypothetical protein YP_001833947.1 KEGG: xau:Xaut_0788 hypothetical protein YP_001833948.1 KEGG: xau:Xaut_0787 hypothetical protein YP_001833949.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mms:mma_1860 oxidoreductase, short chain dehydrogenase/reductase family YP_001833950.1 PFAM: regulatory protein TetR; KEGG: bam:Bamb_3672 transcriptional regulator, TetR family YP_001833951.1 PFAM: Prophage CP4-57 regulatory; KEGG: mes:Meso_0497 phage transcriptional regulator, AlpA YP_001833952.1 TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; ExsB family protein; KEGG: atc:AGR_C_480 GMP synthase (glutamine-hydrolysing) YP_001833953.1 TIGRFAM: methyltransferase FkbM family; KEGG: mex:Mext_0376 methyltransferase FkbM family YP_001833954.1 KEGG: pla:Plav_2600 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_001833955.1 PFAM: DNA repair protein RadC; KEGG: rpc:RPC_0575 DNA repair protein RadC YP_001833956.1 PFAM: EAL domain protein; KEGG: azc:AZC_4658 conserved putative membrane protein YP_001833957.1 PFAM: Usg family protein; KEGG: bja:bsl5624 hypothetical protein YP_001833958.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: bbt:BBta_5312 hypothetical protein YP_001833959.1 KEGG: rpc:RPC_1636 xanthine dehydrogenase accessory factor YP_001833960.1 PFAM: protein of unknown function DUF182; KEGG: mex:Mext_1055 protein of unknown function DUF182 YP_001833961.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: reu:Reut_A1692 alpha/beta hydrolase YP_001833962.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: cya:CYA_2030 TonB family protein YP_001833963.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bms:BR0700 short chain dehydrogenase YP_001833964.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bmb:BruAb2_1006 ubiquinone/menaquinone biosynthesis methyltransferase YP_001833965.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: nha:Nham_0050 2-polyprenylphenol 6-hydroxylase YP_001833966.1 KEGG: bur:Bcep18194_B1796 hypothetical protein YP_001833967.1 KEGG: pla:Plav_3656 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_001833968.1 KEGG: xau:Xaut_0077 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_001833969.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: azc:AZC_0708 putative transcriptional regulator YP_001833971.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: xau:Xaut_2034 PTS IIA-like nitrogen-regulatory protein PtsN YP_001833972.1 PFAM: Glucokinase; KEGG: smd:Smed_3369 glucokinase YP_001833973.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: bmb:BruAb1_0967 FumB, fumarate hydratase, class I YP_001833974.1 PFAM: protein of unknown function DUF949; KEGG: xau:Xaut_0510 protein of unknown function DUF949 YP_001833975.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001833976.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bbt:BBta_5973 isoquinoline 1-oxidoreductase beta subunit YP_001833977.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bbt:BBta_5972 isoquinoline 1-oxidoreductase alpha subunit YP_001833978.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bja:blr4455 putative outer-membrane immunogenic protein precursor YP_001833979.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpd:RPD_2569 secretion protein HlyD YP_001833980.1 PFAM: acriflavin resistance protein; KEGG: rpc:RPC_2559 acriflavin resistance protein YP_001833981.1 PFAM: acriflavin resistance protein; KEGG: rpc:RPC_2560 acriflavin resistance protein YP_001833982.1 PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: xau:Xaut_3512 ferric reductase domain protein transmembrane component domain YP_001833983.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: azc:AZC_1017 phosphoribosylanthranilate isomerase YP_001833984.1 KEGG: xau:Xaut_2218 hypothetical protein YP_001833985.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: rpc:RPC_0395 integration host factor subunit beta YP_001833986.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: azc:AZC_3717 peptidase S49 protein YP_001833987.1 PFAM: NUDIX hydrolase; KEGG: xau:Xaut_2145 NUDIX hydrolase YP_001833988.1 KEGG: mex:Mext_2287 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001833989.1 PFAM: Peptidase M23; KEGG: bja:blr0433 hypothetical protein YP_001833990.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001833991.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: mlo:mll4005 hypothetical protein YP_001833992.1 KEGG: bja:blr3152 HSP70 family molecular chaperone YP_001833993.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001833994.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rpd:RPD_4002 TonB-like YP_001833995.1 KEGG: xau:Xaut_1111 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_001833996.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_2126 hypothetical protein YP_001833997.1 KEGG: lic:LIC12825 hypothetical protein YP_001833998.1 KEGG: rha:RHA1_ro00612 hypothetical protein YP_001833999.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5221 transcriptional regulator, AraC family YP_001834000.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bbt:BBta_3743 putative glycerophosphoryl diester phosphodiesterase YP_001834001.1 PFAM: protein of unknown function UPF0074; regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: bja:blr7860 hypothetical protein YP_001834002.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pfo:Pfl_3712 cupin region YP_001834003.1 KEGG: nfa:nfa53680 putative methylated-DNA:protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_001834004.1 KEGG: pla:Plav_1985 hypothetical protein YP_001834005.1 KEGG: rpb:RPB_2974 hypothetical protein YP_001834006.1 PFAM: regulatory protein MarR; KEGG: gdi:GDI0347 putative transcriptional regulator, family MarR YP_001834007.1 PFAM: isochorismatase hydrolase; KEGG: gdi:GDI0348 isochorismatase hydrolase YP_001834008.1 KEGG: bxe:Bxe_A1711 hypothetical protein YP_001834009.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bam:Bamb_3727 major facilitator superfamily MFS_1 YP_001834010.1 KEGG: bcs:BCAN_A0546 hypothetical protein YP_001834011.1 PFAM: ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bra:BRADO0452 putative bifunctional protein: class I glutamine amidotransferase-like (N-terminal), transcriptional regulator protein AraC/XylS family (C-terminal) YP_001834012.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_5206 short-chain dehydrogenase/reductase SDR YP_001834013.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN2135 carboxymuconolactone decarboxylase YP_001834014.1 KEGG: bbt:BBta_3039 putative succinate-semialdehyde dehydrogenase YP_001834015.1 KEGG: reh:H16_B1352 insecticidal toxin complex protein YP_001834017.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gdi:GDI0260 putative NADPH quinone oxidoreductase protein YP_001834018.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B3081 transcriptional regulator, LysR family YP_001834019.1 PFAM: aldo/keto reductase; KEGG: psp:PSPPH_1746 oxidoreductase, aldo/keto reductase family YP_001834020.1 PFAM: beta-lactamase domain protein; KEGG: rru:Rru_A0028 beta-lactamase-like YP_001834021.1 KEGG: rru:Rru_A0029 hypothetical protein YP_001834022.1 KEGG: rru:Rru_A0030 hypothetical protein YP_001834023.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rru:Rru_A0031 transcriptional regulator, LysR family YP_001834024.1 PFAM: extracellular solute-binding protein family 1; KEGG: azo:azo3835 putative regulatory lipoprotein YP_001834025.1 PFAM: protein of unknown function DUF1111; KEGG: pen:PSEEN2346 hypothetical protein YP_001834026.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA0153 possible outer membrane receptor for Fe transport YP_001834027.1 KEGG: bcs:BCAN_A0546 hypothetical protein YP_001834028.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: sal:Sala_2525 transcriptional regulator, LuxR family YP_001834029.1 PFAM: autoinducer synthesis protein; KEGG: sal:Sala_2589 autoinducer synthesis protein YP_001834030.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: sal:Sala_2590 phytanoyl-CoA dioxygenase YP_001834031.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: swi:Swit_5012 regulatory protein, LuxR YP_001834032.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: plu:plu0930 hypothetical protein YP_001834033.1 KEGG: bpe:BP2856 hypothetical protein YP_001834034.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpe:BP2857 putative LysR-family transcriptional regulator YP_001834035.1 PFAM: regulatory protein TetR; KEGG: ava:Ava_1596 transcriptional regulator, TetR family YP_001834036.1 KEGG: bmu:Bmul_4384 hypothetical protein YP_001834038.1 PFAM: protein of unknown function DUF892; KEGG: azc:AZC_2285 hypothetical protein YP_001834039.1 KEGG: gdi:GDI1519 hypothetical protein YP_001834040.1 PFAM: isochorismatase hydrolase; KEGG: mex:Mext_0062 isochorismatase hydrolase YP_001834041.1 PFAM: Inorganic pyrophosphatase; KEGG: sus:Acid_3034 inorganic pyrophosphatase YP_001834042.1 PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_5011 putative alpha/beta hydrolase YP_001834043.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_1014 short-chain dehydrogenase/reductase SDR YP_001834044.1 KEGG: rpd:RPD_3215 hypothetical protein YP_001834045.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rle:pRL110421 putative oxidoreductase/stress-related protein YP_001834046.1 KEGG: mma:MM_0228 hypothetical protein YP_001834047.1 KEGG: bta:789503 similar to mucin 5 YP_001834048.1 PFAM: protein of unknown function UPF0118; KEGG: gox:GOX0988 hypothetical protein YP_001834050.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bra:BRADO3245 putative two-component system sensor protein YP_001834051.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bra:BRADO3244 putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator YP_001834052.1 KEGG: bra:BRADO3242 hypothetical protein YP_001834054.1 PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: mex:Mext_3966 arsenical pump membrane protein YP_001834055.1 KEGG: gbe:GbCGDNIH1_1401 hypothetical membrane spanning protein YP_001834056.1 PFAM: major facilitator superfamily MFS_1; KEGG: bra:BRADO3241 major facilitator superfamily (MFS) transporter YP_001834057.1 KEGG: acr:Acry_3597 transposase and inactivated derivatives-like protein YP_001834058.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mva:Mvan_3906 GCN5-related N-acetyltransferase YP_001834059.1 PFAM: Patatin; KEGG: xau:Xaut_1886 patatin YP_001834060.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_6971 D-beta-hydroxybutyrate dehydrogenase YP_001834061.1 KEGG: nha:Nham_0618 putative ferric uptake regulator, FUR family YP_001834062.1 KEGG: ajs:Ajs_3068 hypothetical protein YP_001834063.1 PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: sma:SAV101 polyketide synthase YP_001834064.1 PFAM: glycosyl transferase family 20; KEGG: rle:RL0503 putative trehalose-6-phosphate synthase,glycosyltransferase YP_001834065.1 KEGG: mex:Mext_2713 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001834066.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: swi:Swit_5251 histidine kinase YP_001834068.1 KEGG: ade:Adeh_2750 3-oxoacyl-[acyl-carrier-protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_001834069.1 PFAM: UspA domain protein; KEGG: mex:Mext_1765 UspA domain protein YP_001834070.1 PFAM: PRC-barrel domain protein; KEGG: xau:Xaut_4137 PRC-barrel domain protein YP_001834071.1 PFAM: heat shock protein Hsp20; KEGG: mex:Mext_4556 heat shock protein HSP20 YP_001834072.1 PFAM: transcription activator effector binding; KEGG: bra:BRADO0382 conserved hypothetical protein; putative secreted protein YP_001834073.1 KEGG: bch:Bcen2424_5289 hypothetical protein YP_001834074.1 KEGG: azc:AZC_1536 hypothetical protein YP_001834075.1 PFAM: protein of unknown function DUF983; KEGG: pla:Plav_2829 protein of unknown function DUF983 YP_001834076.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_4418 major facilitator superfamily MFS_1 YP_001834077.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001834078.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: mex:Mext_1051 DNA repair protein RecO YP_001834079.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: azc:AZC_1999 quinone oxidoreductase YP_001834080.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rpb:RPB_4433 threonine aldolase YP_001834082.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin) YP_001834083.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_001834084.1 PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2884 glycosyl transferase, family 2 YP_001834086.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mex:Mext_1893 cold-shock protein DNA-binding YP_001834087.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nha:Nham_0696 phosphatidylethanolamine N-methyltransferase YP_001834088.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001834089.1 PFAM: protein of unknown function DUF1153; KEGG: rpe:RPE_0964 protein of unknown function DUF1153 YP_001834090.1 KEGG: mex:Mext_0821 hypothetical protein YP_001834091.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: rpc:RPC_3720 leucyl aminopeptidase YP_001834092.1 PFAM: NLP/P60 protein; KEGG: mex:Mext_0858 NLP/P60 protein YP_001834093.1 PFAM: ribosomal protein L35; KEGG: bbt:BBta_0216 50S ribosomal protein L35 YP_001834094.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001834095.1 KEGG: afm:AFUA_1G10012 conserved hypothetical protein YP_001834096.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: cak:Caul_2070 carbohydrate kinase, thermoresistant glucokinase family YP_001834097.1 KEGG: rpe:RPE_0224 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001834098.1 binds the polymerase to DNA and acts as a sliding clamp YP_001834099.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pau:PA14_58210 putative RplA family protein YP_001834100.1 KEGG: oan:Oant_1728 hypothetical protein YP_001834101.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: oan:Oant_1727 methyltransferase type 12 YP_001834102.1 PFAM: protein of unknown function DUF403; KEGG: bra:BRADO2904 hypothetical protein YP_001834103.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpd:RPD_2240 protein of unknown function DUF404 YP_001834105.1 PFAM: beta-Ig-H3/fasciclin; KEGG: mex:Mext_3627 beta-Ig-H3/fasciclin YP_001834106.1 PFAM: protein of unknown function DUF459; KEGG: mex:Mext_3271 protein of unknown function DUF459 YP_001834107.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_1194 ErfK/YbiS/YcfS/YnhG precursor YP_001834108.1 PFAM: DoxX family protein; KEGG: gdi:GDI1220 hypothetical protein YP_001834109.1 KEGG: azc:AZC_3903 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001834110.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; GLUG domain protein; KEGG: nha:Nham_0725 filamentous haemagglutinin-like YP_001834111.1 PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: nha:Nham_0727 hemolysin activation/secretion protein-like YP_001834112.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: nha:Nham_0728 MotA/TolQ/ExbB proton channel YP_001834113.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xau:Xaut_2279 biopolymer transport protein ExbD/TolR YP_001834114.1 TIGRFAM: TonB family protein; KEGG: nha:Nham_0730 TonB-like YP_001834115.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpc:RPC_2987 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001834116.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpe:RPE_2672 tetratricopeptide TPR_2 repeat protein YP_001834117.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: rpe:RPE_0764 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_001834118.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rpe:RPE_2669 general secretion pathway protein D YP_001834119.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bja:blr6437 gluconolactonase precursor YP_001834120.1 PFAM: Carbohydrate-selective porin OprB; KEGG: rso:RSp1632 putative porin B precursor outer (glucose porin) transmembrane protein YP_001834121.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bra:BRADO1392 ABC transporter; periplasmic subunit, putative sugar-binding protein YP_001834122.1 PFAM: inner-membrane translocator; KEGG: bra:BRADO1819 putative L-arabinose transport system permease protein AraH YP_001834123.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr3209 sugar ABC transporter ATP-binding protein YP_001834124.1 KEGG: bbt:BBta_2137 multiple sugar-binding periplasmic receptor ChvE precursor YP_001834125.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bbt:BBta_2136 putative gluconolactonase YP_001834126.1 PFAM: Aldose 1-epimerase; KEGG: xau:Xaut_1020 aldose 1-epimerase YP_001834127.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bja:blr3205 dehydrogenase YP_001834128.1 PFAM: Aldehyde Dehydrogenase_; KEGG: rso:RS05368 probable ketoglutarate semialdehyde dehydrogenase protein YP_001834129.1 PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4924 major facilitator superfamily MFS_1 YP_001834130.1 PFAM: dihydrodipicolinate synthetase; KEGG: xau:Xaut_1021 dihydrodipicolinate synthetase YP_001834131.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_001834132.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bra:BRADO1811 putative transcriptional regulatory protein, GntR family YP_001834133.1 KEGG: bja:blr3200 ABC transporter sugar-binding protein YP_001834134.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bbt:BBta_4871 putative ferrodoxin YP_001834135.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbt:BBta_3287 putative oxidoreductase (AsfA-like), putative L-aspartate oxidase YP_001834136.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: fre:Franean1_2520 taurine dioxygenase YP_001834137.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: swi:Swit_2508 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein YP_001834138.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_0213 TonB dependent receptor, putative YP_001834139.1 PFAM: protein of unknown function DUF938; KEGG: bam:Bamb_3284 protein of unknown function DUF938 YP_001834140.1 PFAM: HWE histidine kinase; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: mex:Mext_3300 PAS sensor protein YP_001834141.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr7329 putative multidrug resistance protein YP_001834142.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_0993 hydrophobe/amphiphile efflux-1 HAE1 YP_001834143.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: psa:PST_3772 membrane-bound lytic murein transglycosylase, putative YP_001834145.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: azc:AZC_2763 pyruvate phosphate dikinase YP_001834146.1 KEGG: bbt:BBta_2339 hypothetical protein YP_001834147.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: bja:bll7291 transcriptional regulatory protein YP_001834148.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mex:Mext_0886 cold-shock protein DNA-binding YP_001834149.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dsh:Dshi_0827 cytidine deaminase YP_001834150.1 KEGG: rru:Rru_A3018 hypothetical protein YP_001834151.1 KEGG: azc:AZC_4179 hypothetical protein YP_001834152.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rpa:RPA4748 3-hydroxybutyryl-CoA dehydrogenase YP_001834153.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: azc:AZC_0369 HNH endonuclease YP_001834154.1 KEGG: bur:Bcep18194_B0123 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756 YP_001834156.1 KEGG: mes:Meso_3567 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein YP_001834157.1 KEGG: bja:bll0688 hypothetical protein YP_001834159.1 KEGG: mex:Mext_3937 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_001834160.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: pfo:Pfl_4503 FxsA YP_001834161.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: mex:Mext_1560 import inner membrane translocase subunit Tim44 YP_001834162.1 PFAM: MltA domain protein; 3D domain protein; KEGG: azc:AZC_4601 membrane-bound lytic murein transglycosylase YP_001834163.1 PFAM: Smr protein/MutS2; KEGG: rpc:RPC_0301 Smr protein/MutS2 YP_001834164.1 PFAM: helix-turn-helix domain protein; KEGG: rle:RL0011 putative transcriptional regulator YP_001834165.1 PFAM: protein of unknown function DUF1025; KEGG: mex:Mext_2340 protein of unknown function DUF1025 YP_001834166.1 SMART: WD-40 repeat protein; KEGG: mex:Mext_2336 WD-40 repeat protein YP_001834167.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: atc:AGR_C_3401 conserved hypothetical protein NMB0773 YP_001834168.1 PFAM: BolA family protein; KEGG: azc:AZC_2232 BolA-like protein YP_001834169.1 TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bra:BRADO2785 phosphoribosylformylglycinamidine synthase II YP_001834170.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001834171.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: rpd:RPD_1748 phosphoribosylformylglycinamidine synthase subunit PurS YP_001834172.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001834173.1 PFAM: protein of unknown function DUF1476; KEGG: pla:Plav_2590 protein of unknown function DUF1476 YP_001834174.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bbt:BBta_0401 site-specific tyrosine recombinase XerC YP_001834175.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001834176.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_001834177.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_001834178.1 PFAM: DoxX family protein; KEGG: azc:AZC_3487 DoxX family protein YP_001834179.1 KEGG: azc:AZC_3486 hypothetical protein YP_001834180.1 PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: azc:AZC_3485 hypothetical protein YP_001834181.1 KEGG: bbt:BBta_3391 hypothetical protein YP_001834182.1 KEGG: azc:AZC_3484 hypothetical protein YP_001834183.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001834184.1 PFAM: protein of unknown function DUF1109; KEGG: rpe:RPE_1945 protein of unknown function DUF1109 YP_001834185.1 PFAM: RNA-binding S4 domain protein; KEGG: mes:Meso_3377 RNA-binding S4 YP_001834186.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rpa:RPA0489 ferredoxin II YP_001834188.1 PFAM: transcription factor CarD; KEGG: rpc:RPC_0548 transcriptional regulator, CarD family YP_001834189.1 KEGG: rpb:RPB_3347 phosphoserine phosphatase SerB:HAD-superfamily hydrolase subfamily IB, PSPase-like; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_001834190.1 PFAM: LamB/YcsF family protein; KEGG: rpa:RPA2681 hypothetical protein YP_001834191.1 PFAM: Allophanate hydrolase subunit 1; KEGG: azc:AZC_4073 putative allophanate hydrolase subunit 1 YP_001834192.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: xau:Xaut_1495 UreA amidolyase related protein YP_001834193.1 KEGG: bvi:Bcep1808_3111 flagellar basal body P-ring biosynthesis protein FlgA YP_001834194.1 KEGG: nha:Nham_2175 hypothetical protein YP_001834195.1 KEGG: nve:NEMVE_v1g222393 hypothetical protein Pfam: 7tm_1 OPT DUF486 ThiG ABC2_membrane PMT Coat_X Voltage_CLC DUF81 BPD_transp_2 DUF125 PROSITE: G_PROTEIN_RECEP_F1_1 HEXAPEP_TRANSFERASES ALA_RICH GLY_RICH VAL_RICH G_PROTEIN_RECEP_F1_2 YP_001834196.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: mex:Mext_0003 DNA replication and repair protein RecF YP_001834197.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_0845 GCN5-related N-acetyltransferase YP_001834199.1 PFAM: ferredoxin; KEGG: mca:MCA0232 ferredoxin, 2Fe-2S YP_001834200.1 KEGG: mex:Mext_0048 hypothetical protein YP_001834201.1 KEGG: rpa:RPA0919 ABC transporter, ATP-binding protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001834202.1 TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: bxe:Bxe_B0022 hypothetical protein YP_001834203.1 TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: bja:blr3001 hypothetical protein YP_001834204.1 TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: bpd:BURPS668_A3277 squalene/phytoene synthase family protein YP_001834205.1 TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_1943 squalene-associated FAD-dependent desaturase YP_001834206.1 KEGG: mex:Mext_1944 squalene-hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase YP_001834207.1 KEGG: bma:BMAA2099 hypothetical protein YP_001834208.1 TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein; KEGG: reh:H16_B2170 predicted Fe-S oxidoreductase YP_001834209.1 TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: rpd:RPD_3569 hypothetical protein YP_001834210.1 PFAM: peptidase M48 Ste24p; KEGG: azc:AZC_3720 putative peptidase M48 protein YP_001834211.1 PFAM: nuclease (SNase domain protein); KEGG: bja:blr0145 hypothetical protein YP_001834212.1 KEGG: oan:Oant_0883 hypothetical protein YP_001834215.1 PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: pna:Pnap_4720 hypothetical protein YP_001834216.1 KEGG: nwi:Nwi_1486 RecA-family ATPase YP_001834219.1 KEGG: mxa:MXAN_1429 response regulator receiver domain/DnaJ domain protein YP_001834220.1 KEGG: azc:AZC_2164 hypothetical protein YP_001834221.1 KEGG: vha:VIBHAR_01981 hypothetical protein YP_001834222.1 KEGG: oan:Oant_1534 hypothetical protein YP_001834223.1 PFAM: helix-turn-helix domain protein; KEGG: mex:Mext_1487 helix-turn-helix domain protein YP_001834224.1 KEGG: btr:Btr_0514 hypothetical protein YP_001834225.1 KEGG: azc:AZC_4142 hypothetical protein YP_001834226.1 KEGG: rpc:RPC_1461 hypothetical protein YP_001834231.1 KEGG: rle:pRL110239 hypothetical protein YP_001834232.1 KEGG: mlo:mlr4044 hypothetical protein YP_001834233.1 KEGG: xau:Xaut_3424 hypothetical protein YP_001834238.1 KEGG: oan:Oant_0882 phage integrase family protein YP_001834241.1 KEGG: mex:Mext_4027 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_001834242.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001834243.1 KEGG: mex:Mext_2688 putative membrane protein of unknown function YP_001834244.1 PFAM: protein of unknown function DUF344; KEGG: bcs:BCAN_A0303 protein of unknown function DUF344 YP_001834245.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xau:Xaut_0196 histidine kinase YP_001834246.1 KEGG: xau:Xaut_1830 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_001834247.1 KEGG: bja:blr0640 DNA polymerase III epsilon chain; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_001834248.1 KEGG: cel:F53H1.4 F53H1.4c YP_001834249.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_001834250.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein YP_001834251.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: bbt:BBta_1705 putative oxidoreductase, GMC family YP_001834252.1 KEGG: oan:Oant_0061 hypothetical protein YP_001834253.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: acr:Acry_1387 glyoxalase/bleomycin resistance protein/dioxygenase YP_001834254.1 PFAM: cytochrome c class I; KEGG: azc:AZC_0960 cytochrome c YP_001834255.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: nar:Saro_3315 transport-associated YP_001834256.1 KEGG: pde:Pden_3781 hypothetical protein YP_001834257.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: bja:bll5071 mechanosensitive channel homolog YP_001834258.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001834259.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_001834260.1 KEGG: aba:Acid345_1413 hypothetical protein YP_001834261.1 KEGG: aba:Acid345_1413 hypothetical protein YP_001834262.1 KEGG: gdi:GDI1670 hypothetical protein YP_001834263.1 KEGG: rpb:RPB_3326 hypothetical protein YP_001834264.1 PFAM: aminotransferase class-III; KEGG: rpe:RPE_1819 aminotransferase class-III YP_001834265.1 PFAM: inositol monophosphatase; KEGG: mlo:mlr3921 extragenic suppressor protein SuhB YP_001834266.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001834267.1 PFAM: protein of unknown function DUF55; KEGG: azc:AZC_0265 hypothetical protein YP_001834268.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001834269.1 KEGG: oan:Oant_3315 L-2-amino-thiazoline-4-carboxylic acid hydrolase YP_001834270.1 PFAM: SCP-like extracellular; KEGG: xau:Xaut_2095 SCP-like extracellular YP_001834271.1 PFAM: MscS Mechanosensitive ion channel; KEGG: mex:Mext_4833 MscS mechanosensitive ion channel YP_001834272.1 KEGG: sme:SMc00355 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_001834273.1 PFAM: tRNA synthetase class II (D K and N); KEGG: sme:SMc00356 putative lysyl-tRNA synthetase protein YP_001834274.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001834275.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN3999 threonine dehydratase YP_001834276.1 KEGG: azc:AZC_0441 hypothetical protein YP_001834277.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rsh:Rsph17029_3841 3-demethylubiquinone-9 3-methyltransferase YP_001834278.1 PFAM: protein of unknown function DUF1428; KEGG: sal:Sala_0015 protein of unknown function DUF1428 YP_001834279.1 PFAM: helix-turn-helix HxlR type; KEGG: oan:Oant_2549 transcriptional regulator, HxlR family YP_001834280.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rpe:RPE_2748 type I secretion outer membrane protein, TolC family YP_001834281.1 PFAM: N-formylglutamate amidohydrolase; KEGG: mex:Mext_2748 N-formylglutamate amidohydrolase YP_001834282.1 PFAM: protein of unknown function DUF1036; KEGG: azc:AZC_0444 hypothetical protein YP_001834283.1 KEGG: ret:RHE_CH03667 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase YP_001834284.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_4428 PAS sensor protein YP_001834285.1 KEGG: pla:Plav_0060 hypothetical protein YP_001834286.1 KEGG: bja:bll1466 hypothetical protein YP_001834288.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media YP_001834289.1 KEGG: rpe:RPE_1750 hypothetical protein YP_001834290.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mes:Meso_3107 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001834291.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: mex:Mext_2664 fumarate hydratase, class II YP_001834292.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001834293.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO0281 putative short chain dehydrogenase/reductase family member YP_001834294.1 PFAM: protein of unknown function DUF1332; KEGG: bbt:BBta_0275 hypothetical protein YP_001834296.1 KEGG: mex:Mext_1630 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_001834297.1 PFAM: HI0933 family protein; KEGG: nha:Nham_2553 HI0933-like protein YP_001834298.1 PFAM: protein of unknown function DUF1465; KEGG: nwi:Nwi_2748 protein of unknown function DUF1465 YP_001834299.1 PFAM: ribonuclease BN; KEGG: xau:Xaut_0308 putative ribonuclease BN YP_001834300.1 PFAM: protein of unknown function DUF195; KEGG: azc:AZC_0799 RmuC family protein YP_001834302.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpa:RPA3835 hypothetical protein YP_001834303.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: mex:Mext_1478 preprotein translocase, SecA subunit YP_001834304.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: xau:Xaut_3112 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001834305.1 KEGG: gox:GOX0013 hypothetical protein YP_001834306.1 PFAM: protein of unknown function DUF488; KEGG: mlo:mll7394 hypothetical protein YP_001834307.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: mex:Mext_0413 peptidyl-dipeptidase DCP YP_001834308.1 PFAM: UreE urease accessory domain protein; KEGG: bra:BRADO1043 urease accessory protein UreE YP_001834309.1 PFAM: Urease accessory protein UreF; KEGG: mex:Mext_3014 urease accessory protein UreF YP_001834310.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: mex:Mext_3013 urease accessory protein UreG YP_001834311.1 KEGG: mex:Mext_3140 hypothetical protein YP_001834312.1 PFAM: Secreted repeat of unknown function; KEGG: tbd:Tbd_1655 probable transmembrane protein YP_001834313.1 KEGG: pla:Plav_2197 hypothetical protein YP_001834314.1 PFAM: protein of unknown function DUF323; KEGG: pla:Plav_2198 protein of unknown function DUF323 YP_001834315.1 KEGG: gsu:GSU2811 cytochrome c Hsc YP_001834316.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gdi:GDI1358 transcriptional regulator protein YP_001834317.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: mex:Mext_4247 electron-transferring-flavoprotein dehydrogenase YP_001834318.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: xau:Xaut_0624 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_001834319.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xau:Xaut_0623 acyl-CoA dehydrogenase domain protein YP_001834320.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: sal:Sala_0178 electron transfer flavoprotein beta-subunit YP_001834321.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: oan:Oant_1012 electron transfer flavoprotein alpha subunit YP_001834322.1 KEGG: rru:Rru_A1383 acetate CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_001834323.1 KEGG: rru:Rru_A1382 butyrate-acetoacetate CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_001834324.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr7857 putative 3-hydroxybutyryl-CoA dehydratase YP_001834325.1 KEGG: ddi:DDBDRAFT_0167791 hypothetical protein YP_001834326.1 KEGG: gox:GOX2647 hydroxyacylglutathione hydrolase YP_001834327.1 KEGG: bbt:BBta_7127 hypothetical protein YP_001834328.1 KEGG: bra:BRADO0926 hypothetical protein containing two histidine-rich domains; putative signal peptide YP_001834329.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rpa:RPA3752 transglutaminase-like domain YP_001834330.1 PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: cak:Caul_2638 protein of unknown function DUF404 YP_001834331.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: aae:aq_061 molybdenum cofactor biosynthesis MOG YP_001834332.1 TIGRFAM: addiction module antidote protein, HigA family; KEGG: rpc:RPC_3187 plasmid maintenance system antidote protein, XRE family YP_001834333.1 PFAM: Extracellular ligand-binding receptor; KEGG: nha:Nham_0148 extracellular ligand-binding receptor YP_001834334.1 KEGG: scl:sce2908 cell division membrane protein YP_001834335.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: xau:Xaut_1267 cytochrome d ubiquinol oxidase, subunit II YP_001834336.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: mes:Meso_4066 cytochrome bd ubiquinol oxidase, subunit I YP_001834339.1 PFAM: protein of unknown function DUF1127; KEGG: oan:Oant_2332 protein of unknown function DUF1127 YP_001834340.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sal:Sala_1395 glucose/galactose transporter YP_001834341.1 KEGG: xau:Xaut_4319 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase YP_001834342.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: fre:Franean1_7058 shikimate dehydrogenase substrate binding domain protein YP_001834343.1 PFAM: ROK family protein; KEGG: sil:SPO0860 xylose repressor, putative YP_001834344.1 KEGG: mex:Mext_0614 GatB/YqeY YP_001834345.1 KEGG: dol:Dole_1084 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_001834346.1 KEGG: rpb:RPB_4132 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein YP_001834347.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_001834348.1 KEGG: nha:Nham_4014 ISSpo6, transposase orf A YP_001834349.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bra:BRADO3956 putative two-component system histidine kinase YP_001834350.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mlo:mll4419 two-component response regulator YP_001834351.1 KEGG: bja:blr7618 hypothetical protein YP_001834353.1 TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA4387 possible ferrichrome-iron receptor YP_001834354.1 KEGG: bja:bll2452 hypothetical protein YP_001834355.1 KEGG: azc:AZC_1764 urease beta subunit; TIGRFAM: urease, beta subunit; urease, gamma subunit; PFAM: Urease beta subunit; Urease gamma subunit region YP_001834356.1 PFAM: Urease accessory protein UreD; KEGG: xau:Xaut_4154 urease accessory protein UreD YP_001834357.1 PFAM: protein of unknown function DUF1178; KEGG: bja:blr0212 hypothetical protein YP_001834358.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 2; KEGG: pla:Plav_1737 glutaredoxin 3 YP_001834359.1 KEGG: sme:SMc02769 hypothetical protein YP_001834360.1 PFAM: Extensin family protein; KEGG: azc:AZC_4252 putative uncharacterized protein YP_001834361.1 PFAM: Glutathione S-transferase domain; KEGG: mex:Mext_2386 glutathione S-transferase domain YP_001834362.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: mes:Meso_3598 domain of unknown function DUF1730 YP_001834363.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: bja:blr6839 hypothetical protein YP_001834364.1 KEGG: nmu:Nmul_A0298 hypothetical protein YP_001834365.1 KEGG: gdi:GDI0218 hypothetical protein YP_001834366.1 KEGG: gdi:GDI0217 putative 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_001834367.1 TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; KEGG: xau:Xaut_1799 coenzyme PQQ biosynthesis protein E YP_001834368.1 PFAM: coenzyme PQQ synthesis D; KEGG: rpa:RPA1949 pyrroloquinoline quinone biosynthesis protein D YP_001834369.1 Required in the synthesis of PPQ, but its exact function is unknown YP_001834370.1 TIGRFAM: coenzyme PQQ biosynthesis protein B; KEGG: mex:Mext_1819 coenzyme PQQ biosynthesis protein B YP_001834371.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mlo:mll4552 intracellular PHB depolymerase YP_001834372.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_0595 ATP-binding region ATPase domain protein YP_001834373.1 PFAM: response regulator receiver; KEGG: mex:Mext_0596 response regulator receiver YP_001834374.1 PFAM: ribosomal protein L34; KEGG: rpe:RPE_0642 ribosomal protein L34 YP_001834375.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: mex:Mext_2352 ribonuclease P protein component YP_001834376.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: azc:AZC_4053 60 kDa inner membrane protein YP_001834377.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001834378.1 TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: xau:Xaut_0013 acetylglutamate kinase YP_001834379.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_2341 pyrimidine 5'-nucleotidase YP_001834380.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: pla:Plav_0267 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_001834381.1 KEGG: hau:Haur_5091 hypothetical protein YP_001834382.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA3846 GCN5-related N-acetyltransferase YP_001834383.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: bja:bll3023 hypothetical protein YP_001834384.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_001834386.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: csa:Csal_0179 peroxidase YP_001834387.1 PFAM: aldo/keto reductase; KEGG: mex:Mext_3852 aldo/keto reductase YP_001834388.1 PFAM: cyclase family protein; KEGG: art:Arth_3556 cyclase family protein YP_001834389.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: spe:Spro_3095 succinic semialdehyde dehydrogenase YP_001834390.1 KEGG: rpc:RPC_0801 hypothetical protein YP_001834391.1 PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_6939 hypothetical protein YP_001834393.1 PFAM: beta-lactamase domain protein; KEGG: atc:AGR_C_4888 hypothetical protein YP_001834394.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function YP_001834396.1 KEGG: gbe:GbCGDNIH1_1600 hypothetical protein YP_001834397.1 KEGG: rpa:RPA0245 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001834398.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001834399.1 Essential for efficient processing of 16S rRNA YP_001834400.1 KEGG: mex:Mext_0658 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_001834402.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: bja:bll1421 prephenate dehydratase YP_001834403.1 PFAM: cytochrome c class I; KEGG: mex:Mext_0341 cytochrome c class I YP_001834404.1 PFAM: extracellular solute-binding protein family 5; KEGG: azc:AZC_0134 putative ABC transporter solute-binding protein precursor YP_001834405.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_7053 putative oligopeptide transport protein (ABC superfamily, membrane) YP_001834406.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_2515 binding-protein-dependent transport systems inner membrane component YP_001834407.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1933 ABC transporter related YP_001834408.1 PFAM: protein of unknown function DUF423; KEGG: mlo:mll8379 hypothetical protein YP_001834409.1 PFAM: response regulator receiver; KEGG: ccr:CC_3015 response regulator YP_001834411.1 PFAM: AsmA family protein; KEGG: rpa:RPA4157 possible AsmA protein, assembly of outer membrane proteins YP_001834412.1 TIGRFAM: lytic murein transglycosylase; KEGG: bbt:BBta_4395 putative exported protein of unknown function with transglycolase YP_001834413.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cak:Caul_3605 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_001834414.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: cak:Caul_3606 (2Fe-2S)-binding domain protein YP_001834415.1 PFAM: cytochrome c class I; KEGG: cak:Caul_3607 gluconate 2-dehydrogenase (acceptor) YP_001834417.1 KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein YP_001834419.1 KEGG: lbl:LBL_0298 lipoprotein releasing system, LolE permease component YP_001834420.1 PFAM: protein of unknown function DUF847; KEGG: mlo:mlr8547 hypothetical protein YP_001834423.1 PFAM: regulatory protein MerR; KEGG: atu:Atu1181 hypothetical protein YP_001834424.1 TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: azc:AZC_2293 integration host factor alpha subunit YP_001834425.1 KEGG: mex:Mext_2054 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_001834426.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: atc:AGR_C_2176 fatty acid/phospholipid synthesis protein PlsX YP_001834427.1 KEGG: xau:Xaut_4383 hypothetical protein YP_001834428.1 KEGG: mex:Mext_2051 ubiquinol-cytochrome c chaperone YP_001834429.1 PFAM: SmpA/OmlA domain protein; KEGG: rpa:RPA2737 hypothetical protein YP_001834430.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: tbr:Tb10.70.3610 hypothetical protein YP_001834431.1 PFAM: glycoside hydrolase 15-related; KEGG: bxe:Bxe_A3307 hypothetical protein YP_001834432.1 KEGG: bja:blr4624 hypothetical protein YP_001834433.1 PFAM: transcriptional regulator domain protein; KEGG: rle:RL0727 putative two-component regulator transcriptional regulatory protein YP_001834434.1 KEGG: zmo:ZMO1458 hypothetical protein YP_001834435.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: gdi:GDI0172 pyruvate decarboxylase YP_001834436.1 PFAM: major facilitator superfamily MFS_1; KEGG: zmo:ZMO1457 MFS permease YP_001834437.1 KEGG: azc:AZC_0964 hypothetical protein YP_001834438.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: azo:azo1225 sigma-54 dependent transcriptional regulator YP_001834439.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_001834440.1 KEGG: azo:azo1222 phenol 2-monooxygenase YP_001834441.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: bbt:BBta_3632 putative methane/phenol/toluene monooxygenase (A subunit, beta chain) YP_001834442.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: azo:azo1220 conserved hypothetical aromatic/alkene monooxygenase, subunit gamma YP_001834443.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: bja:blr3677 putative monooxygenase component YP_001834444.1 KEGG: mex:Mext_0403 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001834445.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pde:Pden_3135 arsenate reductase YP_001834446.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: rpd:RPD_4144 OmpA/MotB YP_001834448.1 PFAM: protein of unknown function UPF0187; KEGG: xcc:XCC3288 hypothetical protein YP_001834450.1 PFAM: diaminopimelate epimerase; KEGG: mex:Mext_2720 diaminopimelate epimerase YP_001834451.1 KEGG: azc:AZC_3709 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001834452.1 KEGG: mex:Mext_2511 hypothetical protein YP_001834453.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mex:Mext_2512 tyrosine recombinase XerD YP_001834454.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rpa:RPA4780 periplasmic phosphate-binding protein, (PBP) YP_001834455.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll3722 phosphate ABC transporter, permease protein (PstC) YP_001834456.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll3720 phosphate transport system permease protein PstA YP_001834457.1 KEGG: rpb:RPB_0779 phosphate transport system permease protein 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001834458.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: mex:Mext_4717 phosphate transport system regulatory protein PhoU YP_001834459.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xau:Xaut_0202 two component transcriptional regulator, winged helix family YP_001834460.1 KEGG: gbe:GbCGDNIH1_1127 hypothetical protein YP_001834461.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mex:Mext_2677 mandelate racemase/muconate lactonizing protein YP_001834462.1 KEGG: mex:Mext_2380 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein YP_001834463.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_001834464.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001834465.1 KEGG: nwi:Nwi_2008 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase YP_001834466.1 PFAM: protein of unknown function DUF205; KEGG: rpb:RPB_2422 hypothetical protein YP_001834467.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: mex:Mext_3315 DNA protecting protein DprA YP_001834468.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_3230 GCN5-related N-acetyltransferase YP_001834469.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: mex:Mext_4784 Mg2 transporter protein CorA family protein YP_001834470.1 PFAM: PRC-barrel domain protein; KEGG: mlo:mll3685 hypothetical protein YP_001834471.1 required for 70S ribosome assembly YP_001834472.1 KEGG: mex:Mext_3229 cobalt chelatase, pCobT subunit; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A YP_001834473.1 KEGG: nwi:Nwi_0403 cobalt chelatase, pCobS small subunit; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities AAA_5 YP_001834474.1 PFAM: heat shock protein DnaJ domain protein; KEGG: mex:Mext_3231 heat shock protein DnaJ domain protein YP_001834475.1 PFAM: BolA family protein; KEGG: azc:AZC_3676 hypothetical protein YP_001834476.1 KEGG: rpc:RPC_2525 TRAP transporter solute receptor, TAXI family YP_001834477.1 PFAM: glycoside hydrolase 15-related; Glucodextranase N; KEGG: sen:SACE_6308 glucan 1,4-alpha-glucosidase YP_001834478.1 PFAM: FMN-binding domain protein; KEGG: rso:RSc0610 putative signal peptide protein YP_001834479.1 PFAM: ApbE family lipoprotein; KEGG: rso:RSc0611 probable thiamine biosynthesis lipoprotein ApbE precursor transmembrane YP_001834480.1 KEGG: rso:RSc0612 probable transmembrane protein YP_001834481.1 KEGG: pnu:Pnuc_0361 conserved hypothetical secreted protein YP_001834482.1 PFAM: AMP-dependent synthetase and ligase; Leucine-rich repeat 2 protein; KEGG: jan:Jann_1256 AMP-dependent synthetase and ligase YP_001834483.1 KEGG: rpd:RPD_0857 hypothetical protein YP_001834484.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_001834485.1 KEGG: xau:Xaut_3113 hypothetical protein YP_001834486.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: mlo:mll0250 transcription regulator YP_001834488.1 PFAM: metallophosphoesterase; KEGG: mex:Mext_2972 metallophosphoesterase YP_001834489.1 PFAM: Rubrerythrin; protein of unknown function DUF125 transmembrane; KEGG: bja:blr7895 hypothetical protein YP_001834490.1 PFAM: NUDIX hydrolase; KEGG: nha:Nham_3259 NUDIX hydrolase YP_001834491.1 KEGG: swi:Swit_3661 hypothetical protein YP_001834492.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gox:GOX0394 two component sensor histidine kinase YP_001834493.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gdi:GDI3420 two component transcriptional regulator YP_001834494.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: mex:Mext_2751 protein of unknown function DUF882 YP_001834496.1 KEGG: bbr:BB1818 hypothetical protein YP_001834497.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent YP_001834498.1 KEGG: ehi:22.t00027 villin-related protein YP_001834500.1 PFAM: band 7 protein; KEGG: mbn:Mboo_1173 band 7 protein YP_001834501.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: swi:Swit_4667 prevent-host-death family protein YP_001834502.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hne:HNE_1468 transcriptional regulator, LysR family YP_001834503.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_001834504.1 KEGG: pfo:Pfl_2359 3-isopropylmalate dehydratase small subunit region; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_001834505.1 PFAM: alpha/beta hydrolase fold; KEGG: sec:SC0377 putative hydrolase or acyltransferase YP_001834506.1 PFAM: sodium:dicarboxylate symporter; KEGG: psp:PSPPH_1577 C4-dicarboxylate transport protein 3 YP_001834507.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: oan:Oant_4151 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001834508.1 PFAM: extracellular solute-binding protein family 5; KEGG: mex:Mext_4272 extracellular solute-binding protein family 5 YP_001834509.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_4273 binding-protein-dependent transport systems inner membrane component YP_001834510.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_4274 binding-protein-dependent transport systems inner membrane component YP_001834511.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: csa:Csal_3002 ABC transporter related YP_001834512.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: azc:AZC_0501 fructose-bisphosphate aldolase YP_001834513.1 PFAM: phosphoglycerate kinase; KEGG: rpd:RPD_4314 phosphoglycerate kinase YP_001834514.1 KEGG: xau:Xaut_3075 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001834515.1 KEGG: rpc:RPC_4765 hypothetical protein YP_001834516.1 PFAM: protein of unknown function DUF710; KEGG: azc:AZC_0507 hypothetical protein YP_001834517.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rpa:RPA4454 antifreeze protein, type I:5-formyltetrahydrofolate cyclo-ligase YP_001834518.1 PFAM: metallophosphoesterase; KEGG: mex:Mext_2362 metallophosphoesterase YP_001834519.1 PFAM: copper resistance protein CopC; KEGG: bbt:BBta_p0115 copper resistance protein C YP_001834520.1 PFAM: copper resistance D domain protein; KEGG: rpd:RPD_4272 copper resistance D YP_001834521.1 KEGG: mex:Mext_1456 hypothetical protein YP_001834522.1 PFAM: ferrochelatase; KEGG: xau:Xaut_2814 ferrochelatase YP_001834523.1 PFAM: thioesterase superfamily protein; KEGG: xau:Xaut_1411 thioesterase superfamily protein YP_001834524.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: mex:Mext_1472 5'-nucleotidase YP_001834526.1 PFAM: protein of unknown function DUF477; KEGG: mlo:mll4125 hypothetical protein YP_001834527.1 PFAM: protein of unknown function DUF477; KEGG: mex:Mext_2019 protein of unknown function DUF477 YP_001834528.1 PFAM: LemA family protein; KEGG: azc:AZC_2562 LemA protein YP_001834529.1 PFAM: protein of unknown function DUF1223; KEGG: bbt:BBta_0383 putative exported protein of unknown function YP_001834530.1 KEGG: azc:AZC_0753 hypothetical protein YP_001834531.1 PFAM: major intrinsic protein; KEGG: gdi:GDI0872 putative aquaporin YP_001834533.1 PFAM: Beta-ketoacyl synthase; KEGG: rru:Rru_A0045 beta-ketoacyl synthase YP_001834534.1 KEGG: rru:Rru_A0044 acyl carrier protein YP_001834535.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: azc:AZC_1703 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase YP_001834536.1 PFAM: major facilitator superfamily MFS_1; KEGG: azc:AZC_1860 putative membrane transport protein YP_001834537.1 KEGG: rru:Rru_A0089 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases YP_001834538.1 KEGG: nha:Nham_2821 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_001834539.1 catalyzes the formation of oxaloacetate from L-aspartate YP_001834540.1 KEGG: nha:Nham_2819 quinolinate synthetase; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A YP_001834541.1 KEGG: nha:Nham_2818 hypothetical protein YP_001834542.1 PFAM: protein of unknown function UPF0102; KEGG: mex:Mext_0406 protein of unknown function UPF0102 YP_001834543.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mex:Mext_0405 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_001834544.1 PFAM: Mammalian cell entry related domain protein; KEGG: nha:Nham_1923 mammalian cell entry related YP_001834545.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_2214 ATP-binding component of ABC transporter YP_001834546.1 PFAM: protein of unknown function DUF140; KEGG: nha:Nham_1921 protein of unknown function DUF140 YP_001834547.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xau:Xaut_3546 dTDP-4-dehydrorhamnose reductase YP_001834548.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rpb:RPB_1562 dTDP-glucose 4,6-dehydratase YP_001834549.1 KEGG: xau:Xaut_3548 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001834550.1 KEGG: rpe:RPE_3364 hypothetical protein YP_001834551.1 KEGG: mex:Mext_0674 conserved hypothetical protein; putative deoxyribonuclease YP_001834552.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bra:BRADO4908 putative cobalamin synthesis protein CobW YP_001834553.1 KEGG: bra:BRADO4907 cobaltochelatase; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase YP_001834554.1 TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: bbt:BBta_3145 putative precorrin-3B synthase (CobG) YP_001834555.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: bvi:Bcep1808_1609 precorrin-8X methylmutase YP_001834556.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mex:Mext_1436 precorrin-2 C20-methyltransferase YP_001834557.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rpe:RPE_2223 precorrin-3B C17-methyltransferase YP_001834558.1 KEGG: rpa:RPA2087 cobalt-precorrin-6x reductase; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK YP_001834559.1 KEGG: xau:Xaut_3280 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001834560.1 KEGG: bbt:BBta_3151 putative CobE protein YP_001834561.1 KEGG: bbt:BBta_3152 precorrin-4 C(11)-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001834562.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: rpe:RPE_2126 filamentation induced by cAMP protein Fic YP_001834563.1 TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: bra:BRADO4898 cobalt-precorrin-6A synthase YP_001834564.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_001834565.1 PFAM: pseudouridine synthase; KEGG: rpc:RPC_0213 pseudouridine synthase YP_001834567.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: mex:Mext_2371 Sel1 domain protein repeat-containing protein YP_001834568.1 PFAM: thiamine monophosphate synthase; KEGG: rpe:RPE_4721 thiamine monophosphate synthase YP_001834569.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mex:Mext_4201 regulatory protein GntR HTH YP_001834570.1 PFAM: aminotransferase class V; KEGG: mex:Mext_4200 aminotransferase class V YP_001834571.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll6038 hypothetical transport protein YP_001834572.1 PFAM: PilT protein domain protein; KEGG: rru:Rru_A1709 PilT protein-like YP_001834573.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rru:Rru_A1710 prevent-host-death protein YP_001834574.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rle:RL2334 putative AraC family transcriptional regulator YP_001834575.1 KEGG: rle:RL2333 hypothetical protein YP_001834576.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: azc:AZC_4070 periplasmic sensor signal transduction histidine kinase YP_001834577.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: mex:Mext_0615 carbamoyl-phosphate synthase, small subunit YP_001834578.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: azc:AZC_1143 putative methyltransferase YP_001834579.1 PFAM: protein of unknown function DUF152; KEGG: rpd:RPD_3877 protein of unknown function DUF152 YP_001834580.1 PFAM: protein of unknown function DUF185; KEGG: azc:AZC_3983 hypothetical protein YP_001834581.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001834582.1 PFAM: protein of unknown function DUF526; KEGG: mlo:mll2675 hypothetical protein YP_001834584.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: mex:Mext_2759 NAD(P)(+) transhydrogenase (AB-specific) YP_001834585.1 KEGG: azc:AZC_0431 putative NAD(P) transhydrogenase subunit alpha part 2 transmembrane protein YP_001834586.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: xau:Xaut_1950 NAD(P)(+) transhydrogenase (AB-specific) YP_001834588.1 KEGG: pna:Pnap_3987 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane YP_001834590.1 KEGG: reh:H16_B1863 cysteine dioxygenase type I YP_001834591.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001834592.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xau:Xaut_2558 two component transcriptional regulator, winged helix family YP_001834593.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpa:RPA4367 sensor histidine kinase YP_001834594.1 PFAM: SirA family protein; KEGG: xau:Xaut_4368 SirA family protein YP_001834595.1 PFAM: Luciferase-like monooxygenase; KEGG: xau:Xaut_3263 luciferase family protein YP_001834596.1 KEGG: bbt:BBta_4144 hypothetical protein YP_001834597.1 FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_001834598.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_001834599.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_001834600.1 acts as an activator or flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_001834601.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella YP_001834602.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_001834603.1 the hook connects flagellar basal body to the flagellar filament YP_001834604.1 PFAM: Carbohydrate-selective porin OprB; KEGG: zmo:ZMO0064 carbohydrate-selective porin YP_001834605.1 KEGG: mex:Mext_1590 conserved hypothetical protein YP_001834606.1 PFAM: ChaC family protein; AIG2 family protein; KEGG: rpe:RPE_4828 ChaC family protein YP_001834607.1 KEGG: mex:Mext_1589 hypothetical protein YP_001834608.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rpc:RPC_4864 phospholipid/glycerol acyltransferase YP_001834609.1 PFAM: helix-turn-helix domain protein; KEGG: cak:Caul_2278 transcriptional regulator, XRE family YP_001834612.1 PFAM: Catalase domain protein; KEGG: bra:BRADO1380 catalase, homologous to the protein SrpA precursor YP_001834613.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001834614.1 PFAM: conserved hypothetical protein; KEGG: rpd:RPD_0427 conserved hypothetical protein 701 YP_001834615.1 KEGG: nha:Nham_2936 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_001834616.1 PFAM: protein of unknown function DUF299; KEGG: mex:Mext_1493 protein of unknown function DUF299 YP_001834617.1 PFAM: Maf family protein; KEGG: nha:Nham_0113 maf protein YP_001834618.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: bbt:BBta_1809 shikimate dehydrogenase YP_001834619.1 KEGG: xau:Xaut_2332 ferredoxin, 2Fe-2S (AaFd4) YP_001834620.1 PFAM: amine oxidase; KEGG: mca:MCA2837 amine oxidase family, flavin-containing protein YP_001834621.1 PFAM: Luciferase-like monooxygenase; KEGG: bra:BRADO3786 conserved hypothetical protein, putative luciferase-alpha subunit YP_001834622.1 PFAM: dihydroneopterin aldolase; KEGG: gbe:GbCGDNIH1_0762 dihydroneopterin aldolase YP_001834623.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mex:Mext_1805 transcriptional coactivator/pterin dehydratase YP_001834624.1 PFAM: protein of unknown function DUF167; KEGG: pde:Pden_2174 protein of unknown function DUF167 YP_001834625.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: mex:Mext_4125 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_001834626.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001834627.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001834628.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: csa:Csal_0960 6-phosphogluconate dehydrogenase, NAD-binding YP_001834629.1 KEGG: ret:RHE_CH00657 hypothetical conserved membrane protein YP_001834630.1 KEGG: bja:bll6847 hypothetical protein YP_001834631.1 KEGG: mex:Mext_0694 hypothetical protein YP_001834632.1 KEGG: ret:RHE_CH00689 hypothetical protein YP_001834633.1 membrane protein involved in the flagellar export apparatus YP_001834634.1 KEGG: bja:bll6850 flagellar biosynthesis protein FliR YP_001834636.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_3869 short-chain dehydrogenase/reductase SDR YP_001834637.1 KEGG: mex:Mext_4396 hypothetical protein YP_001834638.1 KEGG: mms:mma_1043 transcriptional regulator, AraC family YP_001834639.1 KEGG: mms:mma_1044 hypothetical protein YP_001834640.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1436 ABC transporter, duplicated ATPase domains YP_001834641.1 PFAM: cobalbumin biosynthesis protein; KEGG: nar:Saro_0322 cobalbumin biosynthesis enzyme YP_001834642.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: xau:Xaut_4724 protein of unknown function DUF955 YP_001834643.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: dac:Daci_2921 two component transcriptional regulator, LuxR family YP_001834644.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_001834646.1 PFAM: AFG1-family ATPase; KEGG: mex:Mext_0934 AFG1-family ATPase YP_001834647.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_1642 regulatory protein TetR YP_001834648.1 TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: mex:Mext_1643 malate dehydrogenase, NAD-dependent YP_001834649.1 KEGG: bbt:BBta_0393 succinyl-CoA synthetase subunit beta; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein YP_001834650.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: azc:AZC_4014 succinyl-CoA ligase alpha subunit YP_001834651.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_001834652.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: azc:AZC_4011 dihydrolipoamide succinyltransferase YP_001834653.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: rpc:RPC_0183 dihydrolipoamide dehydrogenase YP_001834654.1 PFAM: SpoVT/AbrB domain protein; KEGG: aav:Aave_0579 transcriptional regulator/antitoxin, MazE YP_001834655.1 PFAM: PilT protein domain protein; KEGG: rso:RSc3055 hypothetical protein YP_001834656.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: azc:AZC_0903 serine protease YP_001834657.1 PFAM: regulatory protein RecX; KEGG: gbe:GbCGDNIH1_2275 regulatory protein RecX YP_001834658.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpe:RPE_4843 redoxin domain protein YP_001834659.1 KEGG: rfr:Rfer_3735 twin-arginine translocation pathway signal; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756 YP_001834660.1 PFAM: membrane protein of uknown function UCP014873; KEGG: mlo:mlr6724 hypothetical protein YP_001834661.1 PFAM: protein of unknown function UPF0118; KEGG: mlo:mlr6726 hypothetical protein YP_001834662.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cak:Caul_5142 methyl-accepting chemotaxis sensory transducer YP_001834663.1 KEGG: acr:Acry_2706 hypothetical protein YP_001834664.1 PFAM: response regulator receiver; KEGG: acr:Acry_2707 response regulator receiver protein YP_001834665.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: atc:AGR_C_912 chemotaxis protein YP_001834666.1 PFAM: CheW domain protein; KEGG: acr:Acry_2709 putative CheW protein YP_001834667.1 PFAM: MCP methyltransferase CheR-type; KEGG: acr:Acry_2710 protein-glutamate O-methyltransferase YP_001834668.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_001834669.1 PFAM: response regulator receiver; KEGG: cak:Caul_0283 response regulator receiver protein YP_001834670.1 stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: acr:Acry_2713 CheD, stimulates methylation of MCP proteins YP_001834671.1 KEGG: acr:Acry_2714 hypothetical protein YP_001834672.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: mes:Meso_3918 phospholipid/glycerol acyltransferase YP_001834673.1 KEGG: mex:Mext_4417 hypothetical protein YP_001834674.1 KEGG: mex:Mext_1754 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_001834675.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: mex:Mext_1632 UBA/ThiF-type NAD/FAD binding protein YP_001834676.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001834677.1 TIGRFAM: tol-pal system protein YbgF; KEGG: mex:Mext_4842 tol-pal system protein YbgF YP_001834678.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: bja:bll7147 hypothetical protein YP_001834679.1 KEGG: azc:AZC_0528 FtsH peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001834680.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: acr:Acry_1741 pyrrolo-quinoline quinone YP_001834681.1 PFAM: cytochrome c class I; SMART: extracellular solute-binding protein family 3; KEGG: bam:Bamb_6161 cytochrome c, class I YP_001834682.1 PFAM: alpha/beta hydrolase fold; KEGG: xau:Xaut_2819 alpha/beta hydrolase fold YP_001834683.1 TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: xau:Xaut_2818 histidinol-phosphate phosphatase, putative YP_001834684.1 PFAM: N-formylglutamate amidohydrolase; KEGG: bbt:BBta_1390 putative N-formylglutamate amidohydrolase YP_001834685.1 PFAM: response regulator receiver; KEGG: mex:Mext_3276 response regulator receiver YP_001834686.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: pap:PSPA7_4208 probable transglycolase YP_001834687.1 PFAM: short chain fatty acid transporter; KEGG: reu:Reut_B5759 short chain fatty acid transporter YP_001834688.1 KEGG: mex:Mext_0627 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_001834689.1 PFAM: flagellar basal body-associated protein FliL; KEGG: rpe:RPE_1163 flagellar basal body-associated protein FliL YP_001834690.1 PFAM: flagellar L-ring protein; KEGG: rpc:RPC_1101 flagellar basal body L-ring protein YP_001834691.1 KEGG: rpc:RPC_1100 hypothetical protein YP_001834692.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella YP_001834693.1 KEGG: azc:AZC_0633 flagellar basal-body P-ring formation protein YP_001834694.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella YP_001834695.1 PFAM: flagellar hook-basal body complex protein FliE; KEGG: mex:Mext_0620 flagellar hook-basal body complex protein FliE YP_001834696.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_001834697.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella YP_001834698.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nha:Nham_1928 alcohol dehydrogenase, zinc-binding YP_001834699.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: rpc:RPC_0523 NUDIX hydrolase YP_001834700.1 KEGG: nwi:Nwi_0388 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_001834701.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: rpc:RPC_0371 esterase, PHB depolymerase YP_001834702.1 KEGG: gdi:GDI0639 hypothetical protein YP_001834703.1 PFAM: electron transport protein SCO1/SenC; KEGG: mex:Mext_3224 electron transport protein SCO1/SenC YP_001834704.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: azc:AZC_0565 putative CobW protein YP_001834705.1 PFAM: aldo/keto reductase; KEGG: gox:GOX1598 putative oxidoreductase YP_001834706.1 KEGG: eba:ebB252 hypothetical protein YP_001834707.1 KEGG: xau:Xaut_4140 hypothetical protein YP_001834708.1 PFAM: GcrA cell cycle regulator; KEGG: xau:Xaut_1217 GcrA cell cycle regulator YP_001834709.1 PFAM: protein of unknown function DUF140; KEGG: mex:Mext_0891 protein of unknown function DUF140 YP_001834710.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_0892 ABC transporter related YP_001834711.1 PFAM: Mammalian cell entry related domain protein; KEGG: mex:Mext_0893 mammalian cell entry related domain protein YP_001834712.1 PFAM: protein of unknown function DUF330; KEGG: mex:Mext_0894 protein of unknown function DUF330 YP_001834713.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rpd:RPD_0482 cation diffusion facilitator family transporter YP_001834714.1 KEGG: mex:Mext_0714 ceramide glucosyltransferase YP_001834715.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001834716.1 KEGG: xau:Xaut_4721 hypothetical protein YP_001834717.1 PFAM: CreA family protein; KEGG: nwi:Nwi_1583 CreA