-- dump date 20140618_185103 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 380394000001 SEQ_END SEQ_END NC_011206.1 2885038 2885038 DR NC_011206.1; contig end 2885038..2885038 Acidithiobacillus ferrooxidans ATCC 53993 YP_002218470.1 CDS Lferr_0001 NC_011206.1 252 1610 D KEGG: hha:Hhal_1227 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 252..1610 Acidithiobacillus ferrooxidans ATCC 53993 6878909 YP_002218471.1 CDS Lferr_0002 NC_011206.1 1894 2991 D KEGG: pst:PSPTO_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1894..2991 Acidithiobacillus ferrooxidans ATCC 53993 6875951 YP_002218472.1 CDS Lferr_0003 NC_011206.1 2993 4045 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: aeh:Mlg_0003 DNA replication and repair protein RecF; DNA replication and repair protein RecF 2993..4045 Acidithiobacillus ferrooxidans ATCC 53993 6875952 YP_002218473.1 CDS Lferr_0004 NC_011206.1 4042 6447 D KEGG: lpc:LPC_0004 DNA gyrase, subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 4042..6447 Acidithiobacillus ferrooxidans ATCC 53993 6875953 YP_002218474.1 CDS Lferr_0005 NC_011206.1 6592 10098 D KEGG: noc:Noc_1583 hypothetical protein; hypothetical protein 6592..10098 Acidithiobacillus ferrooxidans ATCC 53993 6875954 YP_002218475.1 CDS Lferr_0006 NC_011206.1 10193 10705 D PFAM: Spore coat U domain protein; KEGG: gbe:GbCGDNIH1_1327 protein U precursor; Spore coat U domain-containing protein 10193..10705 Acidithiobacillus ferrooxidans ATCC 53993 6875955 YP_002218476.1 CDS Lferr_0007 NC_011206.1 10719 11462 D KEGG: gbe:GbCGDNIH1_1328 chaperone protein EcpD; chaperone protein EcpD 10719..11462 Acidithiobacillus ferrooxidans ATCC 53993 6875956 YP_002218477.1 CDS Lferr_0008 NC_011206.1 11449 13872 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: gbe:GbCGDNIH1_1329 outer membrane usher protein SefC; fimbrial biogenesis outer membrane usher protein 11449..13872 Acidithiobacillus ferrooxidans ATCC 53993 6875957 YP_002218478.1 CDS Lferr_0009 NC_011206.1 13869 14333 D PFAM: Spore coat U domain protein; KEGG: gbe:GbCGDNIH1_1330 hypothetical secreted protein; Spore coat U domain-containing protein 13869..14333 Acidithiobacillus ferrooxidans ATCC 53993 6875958 YP_002218479.1 CDS Lferr_0010 NC_011206.1 14356 14484 R PFAM: Septum formation topological specificity factor MinE; KEGG: bbr:BB4016 putative cell division topological specificity factor; Septum formation topological specificity factor MinE complement(14356..14484) Acidithiobacillus ferrooxidans ATCC 53993 6875959 YP_002218480.1 CDS Lferr_0011 NC_011206.1 14492 14926 R KEGG: gvi:glr1121 hypothetical protein; hypothetical protein complement(14492..14926) Acidithiobacillus ferrooxidans ATCC 53993 6875960 YP_002218481.1 CDS Lferr_0012 NC_011206.1 15259 15510 R TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: rfr:Rfer_0034 cell division topological specificity factor MinE; cell division topological specificity factor MinE complement(15259..15510) Acidithiobacillus ferrooxidans ATCC 53993 6875961 YP_002218482.1 CDS Lferr_0013 NC_011206.1 15512 16321 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cvi:CV_3376 septum site-determining protein MinD; septum site-determining protein MinD complement(15512..16321) Acidithiobacillus ferrooxidans ATCC 53993 6875962 YP_002218483.1 CDS Lferr_0014 NC_011206.1 16340 17071 R TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; Septum formation inhibitor MinC domain protein; KEGG: psa:PST_1425 septum site-determining protein MinC; septum site-determining protein MinC complement(16340..17071) Acidithiobacillus ferrooxidans ATCC 53993 6875963 YP_002218484.1 CDS Lferr_0015 NC_011206.1 17102 17428 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hha:Hhal_1658 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(17102..17428) Acidithiobacillus ferrooxidans ATCC 53993 6875964 YP_002218485.1 CDS Lferr_0016 NC_011206.1 17425 19980 R KEGG: mca:MCA2839 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I complement(17425..19980) Acidithiobacillus ferrooxidans ATCC 53993 6875965 YP_002218486.1 CDS Lferr_0017 NC_011206.1 19984 20424 R PFAM: protein of unknown function DUF494; KEGG: aeh:Mlg_2631 protein of unknown function DUF494; hypothetical protein complement(19984..20424) Acidithiobacillus ferrooxidans ATCC 53993 6875966 YP_002218487.1 CDS Lferr_0018 NC_011206.1 20434 21531 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: azo:azo0097 putative DNA processing protein DrpA; DNA protecting protein DprA complement(20434..21531) Acidithiobacillus ferrooxidans ATCC 53993 6875967 YP_002218488.1 CDS Lferr_0019 NC_011206.1 21528 22577 R PFAM: Peptidoglycan-binding LysM; KEGG: pau:PA14_00210 putative lysin domain; peptidoglycan-binding LysM complement(21528..22577) Acidithiobacillus ferrooxidans ATCC 53993 6875968 YP_002218489.1 CDS Lferr_0020 NC_011206.1 22660 23163 D KEGG: tbd:Tbd_0014 formylmethionine deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 22660..23163 Acidithiobacillus ferrooxidans ATCC 53993 6875969 YP_002218490.1 CDS Lferr_0021 NC_011206.1 23156 24097 D TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: aeh:Mlg_2627 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 23156..24097 Acidithiobacillus ferrooxidans ATCC 53993 6875970 YP_002218491.1 CDS Lferr_0022 NC_011206.1 24103 25398 D TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: pfl:PFL_0020 sun protein; sun protein 24103..25398 Acidithiobacillus ferrooxidans ATCC 53993 6875971 YP_002218492.1 CDS Lferr_0023 NC_011206.1 25389 25988 D KEGG: mca:MCA2846 hypothetical protein; hypothetical protein 25389..25988 Acidithiobacillus ferrooxidans ATCC 53993 6875972 YP_002218493.1 CDS Lferr_0024 NC_011206.1 25961 28171 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aeh:Mlg_2624 multi-sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 25961..28171 Acidithiobacillus ferrooxidans ATCC 53993 6875973 YP_002218494.1 CDS Lferr_0025 NC_011206.1 28193 29599 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; KEGG: mca:MCA2848 nitrogen regulation protein NtrX, putative; two component sigma-54 specific Fis family transcriptional regulator 28193..29599 Acidithiobacillus ferrooxidans ATCC 53993 6875974 YP_002218495.1 CDS Lferr_0026 NC_011206.1 29596 29793 D KEGG: amr:AM1_A0133 addiction module antitoxin, putative; hypothetical protein 29596..29793 Acidithiobacillus ferrooxidans ATCC 53993 6875975 YP_002218496.1 CDS Lferr_0027 NC_011206.1 29747 29914 D hypothetical protein 29747..29914 Acidithiobacillus ferrooxidans ATCC 53993 6875976 YP_002218497.1 CDS Lferr_0028 NC_011206.1 30028 31521 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mmw:Mmwyl1_4418 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 30028..31521 Acidithiobacillus ferrooxidans ATCC 53993 6875977 YP_002218498.1 CDS Lferr_0029 NC_011206.1 31563 32930 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU1320 sigma-54 dependent DNA-binding response regulator; two component sigma-54 specific Fis family transcriptional regulator 31563..32930 Acidithiobacillus ferrooxidans ATCC 53993 6875978 YP_002218499.1 CDS Lferr_0030 NC_011206.1 33353 34852 D PFAM: Pyrrolo-quinoline quinone; KEGG: sto:ST1164 hypothetical outer membrane protein; pyrrolo-quinoline quinone 33353..34852 Acidithiobacillus ferrooxidans ATCC 53993 6875979 YP_002218500.1 CDS Lferr_0031 NC_011206.1 34969 36327 D KEGG: tbd:Tbd_1838 hypothetical protein; hypothetical protein 34969..36327 Acidithiobacillus ferrooxidans ATCC 53993 6875980 YP_002218501.1 CDS Lferr_0032 NC_011206.1 36399 37754 R TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: noc:Noc_3086 tRNA modification GTPase TrmE; tRNA modification GTPase TrmE complement(36399..37754) Acidithiobacillus ferrooxidans ATCC 53993 6875981 YP_002218502.1 CDS Lferr_0033 NC_011206.1 37792 39378 R PFAM: 60 kDa inner membrane insertion protein; KEGG: noc:Noc_3087 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein complement(37792..39378) Acidithiobacillus ferrooxidans ATCC 53993 6875982 YP_002218503.1 CDS Lferr_0034 NC_011206.1 39394 39609 R PFAM: protein of unknown function DUF37; KEGG: mmw:Mmwyl1_3004 protein of unknown function DUF37; hypothetical protein complement(39394..39609) Acidithiobacillus ferrooxidans ATCC 53993 6875983 YP_002218504.1 CDS Lferr_0035 NC_011206.1 39606 39956 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: sfu:Sfum_2595 ribonuclease P protein component; ribonuclease P protein component complement(39606..39956) Acidithiobacillus ferrooxidans ATCC 53993 6875984 YP_002218505.1 CDS rpmH NC_011206.1 39961 40095 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(39961..40095) Acidithiobacillus ferrooxidans ATCC 53993 6875985 YP_002218506.1 CDS Lferr_0037 NC_011206.1 40166 41833 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(40166..41833) Acidithiobacillus ferrooxidans ATCC 53993 6875986 YP_002218507.1 CDS Lferr_0038 NC_011206.1 41931 42833 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gvi:glr3360 LysR family transcriptional regulatory protein; LysR family transcriptional regulator complement(41931..42833) Acidithiobacillus ferrooxidans ATCC 53993 6875987 YP_002218508.1 CDS Lferr_0039 NC_011206.1 42895 44007 R PFAM: secretion protein HlyD family protein; KEGG: bvi:Bcep1808_1470 secretion protein HlyD family protein; secretion protein HlyD family protein complement(42895..44007) Acidithiobacillus ferrooxidans ATCC 53993 6875988 YP_002218509.1 CDS Lferr_0040 NC_011206.1 43982 45427 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: kpn:KPN_02576 putative channel/filament proteins; NodT family RND efflux system, outer membrane lipoprotein complement(43982..45427) Acidithiobacillus ferrooxidans ATCC 53993 6875989 YP_002218510.1 CDS Lferr_0041 NC_011206.1 45417 47072 R PFAM: major facilitator superfamily MFS_1; KEGG: acr:Acry_2030 drug resistance transporter, EmrB/QacA subfamily; major facilitator superfamily protein complement(45417..47072) Acidithiobacillus ferrooxidans ATCC 53993 6875990 YP_002218511.1 CDS Lferr_0042 NC_011206.1 47544 48752 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: pfo:Pfl_1664 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 47544..48752 Acidithiobacillus ferrooxidans ATCC 53993 6875991 YP_002218512.1 CDS Lferr_0043 NC_011206.1 48792 49604 D KEGG: bur:Bcep18194_B0411 hypothetical protein; hypothetical protein 48792..49604 Acidithiobacillus ferrooxidans ATCC 53993 6875992 YP_002218513.1 CDS Lferr_0044 NC_011206.1 49629 50639 D KEGG: gox:GOX2657 putative sulfate-binding protein; sulfate-binding protein 49629..50639 Acidithiobacillus ferrooxidans ATCC 53993 6875993 YP_002218514.1 CDS Lferr_0045 NC_011206.1 50692 51774 D PFAM: TQO small subunit DoxD; DoxX family protein; KEGG: gox:GOX2658 putative terminal quinol oxidase, subunit DoxD; TQO small subunit DoxD 50692..51774 Acidithiobacillus ferrooxidans ATCC 53993 6875994 YP_002218515.1 CDS Lferr_0046 NC_011206.1 51872 52519 D SMART: Rhodanese domain protein; KEGG: sth:STH108 hypothetical protein; rhodanese domain-containing protein 51872..52519 Acidithiobacillus ferrooxidans ATCC 53993 6875995 YP_002218516.1 CDS Lferr_0047 NC_011206.1 52580 52981 D SMART: Rhodanese domain protein; KEGG: mac:MA2500 hypothetical protein; rhodanese domain-containing protein 52580..52981 Acidithiobacillus ferrooxidans ATCC 53993 6875996 YP_002218517.1 CDS Lferr_0048 NC_011206.1 53012 53530 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: reh:H16_A0306 peroxiredoxin; redoxin domain-containing protein complement(53012..53530) Acidithiobacillus ferrooxidans ATCC 53993 6875997 YP_002218518.1 CDS Lferr_0049 NC_011206.1 53603 54685 R PFAM: TQO small subunit DoxD; DoxX family protein; KEGG: gox:GOX2658 putative terminal quinol oxidase, subunit DoxD; TQO small subunit DoxD complement(53603..54685) Acidithiobacillus ferrooxidans ATCC 53993 6875998 YP_002218519.1 CDS Lferr_0050 NC_011206.1 54738 55751 R KEGG: gox:GOX2657 putative sulfate-binding protein; sulfate-binding protein complement(54738..55751) Acidithiobacillus ferrooxidans ATCC 53993 6875999 YP_002218520.1 CDS Lferr_0051 NC_011206.1 55773 56585 R KEGG: bam:Bamb_4603 hypothetical protein; hypothetical protein complement(55773..56585) Acidithiobacillus ferrooxidans ATCC 53993 6876000 YP_002218521.1 CDS Lferr_0052 NC_011206.1 56620 57090 R hypothetical protein complement(56620..57090) Acidithiobacillus ferrooxidans ATCC 53993 6876001 YP_002218522.1 CDS Lferr_0053 NC_011206.1 57137 57919 R hypothetical protein complement(57137..57919) Acidithiobacillus ferrooxidans ATCC 53993 6876002 YP_002218523.1 CDS Lferr_0054 NC_011206.1 57923 58981 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: nis:NIS_0041 hypothetical protein; hypothetical protein complement(57923..58981) Acidithiobacillus ferrooxidans ATCC 53993 6876003 YP_002218524.1 CDS Lferr_0055 NC_011206.1 59118 59774 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: reh:H16_A3413 putative transporter; multiple antibiotic resistance (MarC)-like protein complement(59118..59774) Acidithiobacillus ferrooxidans ATCC 53993 6876004 YP_002218525.1 CDS Lferr_0056 NC_011206.1 59886 60143 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: aeh:Mlg_0229 putative regulatory protein, FmdB family; FmdB family regulatory protein 59886..60143 Acidithiobacillus ferrooxidans ATCC 53993 6876005 YP_002218526.1 CDS Lferr_0057 NC_011206.1 60227 62017 D TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: net:Neut_0616 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 60227..62017 Acidithiobacillus ferrooxidans ATCC 53993 6876006 YP_002218527.1 CDS Lferr_0058 NC_011206.1 62103 63200 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 62103..63200 Acidithiobacillus ferrooxidans ATCC 53993 6876007 YP_002218528.1 CDS Lferr_0059 NC_011206.1 63209 63820 D PFAM: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_2382 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 63209..63820 Acidithiobacillus ferrooxidans ATCC 53993 6876008 YP_002218529.1 CDS Lferr_0060 NC_011206.1 63900 64652 D PFAM: protein of unknown function DUF28; KEGG: gur:Gura_1416 hypothetical protein; hypothetical protein 63900..64652 Acidithiobacillus ferrooxidans ATCC 53993 6876009 YP_002218530.1 CDS ruvC NC_011206.1 64678 65235 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; holliday junction resolvase 64678..65235 Acidithiobacillus ferrooxidans ATCC 53993 6876010 YP_002218531.1 CDS ruvA NC_011206.1 65264 65845 D plays an essential role in ATP-dependent branch migration of the Holliday junction; holliday junction DNA helicase RuvA 65264..65845 Acidithiobacillus ferrooxidans ATCC 53993 6876011 YP_002218532.1 CDS Lferr_0063 NC_011206.1 65888 66910 D KEGG: xcv:XCV3277 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Holliday junction DNA helicase RuvB 65888..66910 Acidithiobacillus ferrooxidans ATCC 53993 6876012 YP_002218533.1 CDS Lferr_0064 NC_011206.1 66900 67322 D TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: mca:MCA1224 thioesterase family protein; tol-pal system-associated acyl-CoA thioesterase 66900..67322 Acidithiobacillus ferrooxidans ATCC 53993 6876013 YP_002218534.1 CDS Lferr_0065 NC_011206.1 67329 68030 D TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bxe:Bxe_A3917 biopolymer transport proteins, MotA/TolQ/ExbB family; protein TolQ 67329..68030 Acidithiobacillus ferrooxidans ATCC 53993 6876014 YP_002218535.1 CDS Lferr_0066 NC_011206.1 68027 68437 D TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: abo:ABO_0756 biopolymer transport protein TolR; protein TolR 68027..68437 Acidithiobacillus ferrooxidans ATCC 53993 6876015 YP_002218536.1 CDS Lferr_0067 NC_011206.1 68434 69387 D TIGRFAM: TonB family protein; protein TolA; KEGG: bpt:Bpet0659 colicin exporter; protein TolA 68434..69387 Acidithiobacillus ferrooxidans ATCC 53993 6876016 YP_002218537.1 CDS Lferr_0068 NC_011206.1 69380 70648 D TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller; KEGG: mca:MCA1229 translocation protein TolB; Tol-Pal system beta propeller repeat-containing protein TolB 69380..70648 Acidithiobacillus ferrooxidans ATCC 53993 6876017 YP_002218538.1 CDS Lferr_0069 NC_011206.1 70690 71379 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: tbd:Tbd_2202 ExsB ATPase; exsB protein complement(70690..71379) Acidithiobacillus ferrooxidans ATCC 53993 6876018 YP_002218539.1 CDS Lferr_0070 NC_011206.1 71382 72026 R PFAM: Radical SAM domain protein; KEGG: noc:Noc_0148 radical SAM domain protein; radical SAM protein complement(71382..72026) Acidithiobacillus ferrooxidans ATCC 53993 6876019 YP_002218540.1 CDS Lferr_0071 NC_011206.1 72026 72844 R TIGRFAM: tol-pal system protein YbgF; KEGG: yen:YE2930 hypothetical protein; tol-pal system protein YbgF complement(72026..72844) Acidithiobacillus ferrooxidans ATCC 53993 6876020 YP_002218541.1 CDS Lferr_0072 NC_011206.1 72865 73443 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: swi:Swit_2132 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein complement(72865..73443) Acidithiobacillus ferrooxidans ATCC 53993 6876021 YP_002218542.1 CDS Lferr_0073 NC_011206.1 73504 73800 D hypothetical protein 73504..73800 Acidithiobacillus ferrooxidans ATCC 53993 6876022 YP_002218543.1 CDS Lferr_0074 NC_011206.1 73778 73978 D KEGG: rpb:RPB_2525 hypothetical protein; hypothetical protein 73778..73978 Acidithiobacillus ferrooxidans ATCC 53993 6876023 YP_002218544.1 CDS Lferr_0075 NC_011206.1 74064 75482 R KEGG: stm:STM2082 undecaprenol-phosphate galactosephosphotransferase/O-antigen transferase; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP complement(74064..75482) Acidithiobacillus ferrooxidans ATCC 53993 6876024 YP_002218545.1 CDS Lferr_0076 NC_011206.1 75701 76525 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: mtp:Mthe_0945 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein 75701..76525 Acidithiobacillus ferrooxidans ATCC 53993 6876025 YP_002218546.1 CDS Lferr_0077 NC_011206.1 76601 76972 D PFAM: regulatory protein MarR; KEGG: lbl:LBL_1164 transcriptional regulator; marR family transcriptional regulator 76601..76972 Acidithiobacillus ferrooxidans ATCC 53993 6876026 YP_002218547.1 CDS Lferr_0078 NC_011206.1 77057 77167 D hypothetical protein 77057..77167 Acidithiobacillus ferrooxidans ATCC 53993 6876027 YP_002218548.1 CDS Lferr_0079 NC_011206.1 77164 78663 D PFAM: polysaccharide biosynthesis protein; KEGG: bpm:BURPS1710b_A0753 polysaccharide biosynthesis family protein; polysaccharide biosynthesis protein 77164..78663 Acidithiobacillus ferrooxidans ATCC 53993 6876028 YP_002218549.1 CDS Lferr_0080 NC_011206.1 78653 79714 D PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_2177 methylase involved in ubiquinone/menaquinone biosynthesis-like; type 11 methyltransferase 78653..79714 Acidithiobacillus ferrooxidans ATCC 53993 6876029 YP_002218550.1 CDS Lferr_0081 NC_011206.1 79738 80760 D PFAM: glycosyl transferase family 2; KEGG: plt:Plut_0770 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 79738..80760 Acidithiobacillus ferrooxidans ATCC 53993 6876030 YP_002218551.1 CDS Lferr_0082 NC_011206.1 80757 81968 D PFAM: glycosyl transferase group 1; KEGG: plt:Plut_0772 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 80757..81968 Acidithiobacillus ferrooxidans ATCC 53993 6876031 YP_002218552.1 CDS Lferr_0083 NC_011206.1 81984 83264 D KEGG: psa:PST_1755 hypothetical protein; hypothetical protein 81984..83264 Acidithiobacillus ferrooxidans ATCC 53993 6876032 YP_002218553.1 CDS Lferr_0084 NC_011206.1 83271 84311 D PFAM: glycosyl transferase group 1; KEGG: dge:Dgeo_0347 glycosyl transferase, group 1; group 1 glycosyl transferase 83271..84311 Acidithiobacillus ferrooxidans ATCC 53993 6876033 YP_002218554.1 CDS Lferr_0085 NC_011206.1 84379 85305 D PFAM: glycosyl transferase family 2; KEGG: pfl:PFL_4219 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 84379..85305 Acidithiobacillus ferrooxidans ATCC 53993 6876034 YP_002218555.1 CDS Lferr_0086 NC_011206.1 85298 85666 D KEGG: drm:Dred_3127 glycosyl transferase, group 1; group 1 glycosyl transferase 85298..85666 Acidithiobacillus ferrooxidans ATCC 53993 6876035 YP_002218556.1 CDS Lferr_0087 NC_011206.1 86406 86627 D KEGG: dol:Dole_1901 prevent-host-death family protein; prevent-host-death family protein 86406..86627 Acidithiobacillus ferrooxidans ATCC 53993 6876037 YP_002218557.1 CDS Lferr_0088 NC_011206.1 86627 87040 D KEGG: sfu:Sfum_0407 hypothetical protein; hypothetical protein 86627..87040 Acidithiobacillus ferrooxidans ATCC 53993 6876038 YP_002218558.1 CDS Lferr_0089 NC_011206.1 87037 87327 D KEGG: bth:BT_2327 hypothetical protein; hypothetical protein 87037..87327 Acidithiobacillus ferrooxidans ATCC 53993 6876039 YP_002218559.1 CDS Lferr_0090 NC_011206.1 87493 87768 D PFAM: plasmid maintenance system killer; KEGG: rpa:RPA2283 putative proteic killer suppression protein (plasmid Rts1); plasmid maintenance system killer protein 87493..87768 Acidithiobacillus ferrooxidans ATCC 53993 6876040 YP_002218560.1 CDS Lferr_0091 NC_011206.1 87784 88101 D TIGRFAM: addiction module antidote protein, HigA family; KEGG: rpc:RPC_4745 putative plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein 87784..88101 Acidithiobacillus ferrooxidans ATCC 53993 6876041 YP_002218561.1 CDS Lferr_0092 NC_011206.1 88077 88229 R hypothetical protein complement(88077..88229) Acidithiobacillus ferrooxidans ATCC 53993 6876042 YP_002218562.1 CDS Lferr_0093 NC_011206.1 88395 88502 R hypothetical protein complement(88395..88502) Acidithiobacillus ferrooxidans ATCC 53993 6876043 YP_002218563.1 CDS Lferr_0094 NC_011206.1 88715 89878 D PFAM: filamentation induced by cAMP protein Fic; KEGG: mca:MCA0835 fic family protein; filamentation induced by cAMP protein fic 88715..89878 Acidithiobacillus ferrooxidans ATCC 53993 6876044 YP_002218564.1 CDS Lferr_0096 NC_011206.1 90438 90680 R TIGRFAM: prevent-host-death family protein; KEGG: reh:H16_A3382 antitoxin of toxin-antitoxin stability system; prevent-host-death family protein complement(90438..90680) Acidithiobacillus ferrooxidans ATCC 53993 6876046 YP_002218565.1 CDS Lferr_0097 NC_011206.1 90764 90937 R PFAM: Proto-chlorophyllide reductase 57 kD subunit; KEGG: gvi:glr0215 light-independent protochlorophyllide reductase subunit B; proto-chlorophyllide reductase 57 kD subunit complement(90764..90937) Acidithiobacillus ferrooxidans ATCC 53993 6876047 YP_002218566.1 CDS Lferr_0098 NC_011206.1 91048 91476 R KEGG: eba:ebD76 hypothetical protein; hypothetical protein complement(91048..91476) Acidithiobacillus ferrooxidans ATCC 53993 6876048 YP_002218567.1 CDS Lferr_0099 NC_011206.1 91479 91910 R KEGG: eba:ebD75 hypothetical protein; hypothetical protein complement(91479..91910) Acidithiobacillus ferrooxidans ATCC 53993 6876049 YP_002218568.1 CDS Lferr_0100 NC_011206.1 92056 94248 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; DoxX family protein; KEGG: lpp:lpp0727 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(92056..94248) Acidithiobacillus ferrooxidans ATCC 53993 6876050 YP_002218569.1 CDS Lferr_0101 NC_011206.1 94434 94880 D KEGG: ppf:Pput_3153 amidase; hypothetical protein 94434..94880 Acidithiobacillus ferrooxidans ATCC 53993 6876051 YP_002218570.1 CDS Lferr_0102 NC_011206.1 94887 95972 R PFAM: secretion protein HlyD family protein; KEGG: gur:Gura_1295 secretion protein HlyD family protein; secretion protein HlyD family protein complement(94887..95972) Acidithiobacillus ferrooxidans ATCC 53993 6876052 YP_002218571.1 CDS Lferr_0103 NC_011206.1 95962 96654 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_1294 ABC transporter related; ABC transporter-like protein complement(95962..96654) Acidithiobacillus ferrooxidans ATCC 53993 6876053 YP_002218572.1 CDS Lferr_0104 NC_011206.1 96656 97792 R PFAM: protein of unknown function DUF214; KEGG: gur:Gura_1293 protein of unknown function DUF214; hypothetical protein complement(96656..97792) Acidithiobacillus ferrooxidans ATCC 53993 6876054 YP_002218573.1 CDS Lferr_0105 NC_011206.1 98125 98361 D hypothetical protein 98125..98361 Acidithiobacillus ferrooxidans ATCC 53993 6876055 YP_002218574.1 CDS Lferr_0106 NC_011206.1 98398 99663 R KEGG: acr:Acry_1405 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein complement(98398..99663) Acidithiobacillus ferrooxidans ATCC 53993 6876056 YP_002218575.1 CDS Lferr_0107 NC_011206.1 99750 101051 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cps:CPS_4596 osmolarity sensor protein; integral membrane sensor signal transduction histidine kinase complement(99750..101051) Acidithiobacillus ferrooxidans ATCC 53993 6876057 YP_002218576.1 CDS Lferr_0108 NC_011206.1 101054 101758 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: asa:ASA_4091 two-component system osmolarity response regulator OmpR; winged helix family two component transcriptional regulator complement(101054..101758) Acidithiobacillus ferrooxidans ATCC 53993 6876058 YP_002218577.1 CDS Lferr_0109 NC_011206.1 101985 103544 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pfl:PFL_3615 ABC-type export system, outer membrane channel protein; NodT family RND efflux system, outer membrane lipoprotein 101985..103544 Acidithiobacillus ferrooxidans ATCC 53993 6876059 YP_002218578.1 CDS Lferr_0110 NC_011206.1 103541 104623 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: noc:Noc_0200 secretion protein HlyD; RND family efflux transporter MFP subunit 103541..104623 Acidithiobacillus ferrooxidans ATCC 53993 6876060 YP_002218579.1 CDS Lferr_0111 NC_011206.1 104641 107727 D PFAM: acriflavin resistance protein; KEGG: noc:Noc_0201 acriflavin resistance protein; acriflavin resistance protein 104641..107727 Acidithiobacillus ferrooxidans ATCC 53993 6876061 YP_002218580.1 CDS Lferr_0112 NC_011206.1 107804 107965 D KEGG: bur:Bcep18194_A5683 hypothetical protein; hypothetical protein 107804..107965 Acidithiobacillus ferrooxidans ATCC 53993 6876062 YP_002218581.1 CDS Lferr_0113 NC_011206.1 108222 108758 D PFAM: protein of unknown function DUF924; KEGG: vpa:VPA0111 hypothetical protein; hypothetical protein 108222..108758 Acidithiobacillus ferrooxidans ATCC 53993 6876063 YP_002218582.1 CDS Lferr_0114 NC_011206.1 109071 110090 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: aau:AAur_4145 putative lipase/esterase protein; Alpha/beta hydrolase fold-3 domain-containing protein 109071..110090 Acidithiobacillus ferrooxidans ATCC 53993 6876064 YP_002218583.1 CDS Lferr_0115 NC_011206.1 110110 111546 D PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: ppr:PBPRA2462 hypothetical protein; hypothetical protein 110110..111546 Acidithiobacillus ferrooxidans ATCC 53993 6876065 YP_002218584.1 CDS Lferr_0116 NC_011206.1 111568 111804 D hypothetical protein 111568..111804 Acidithiobacillus ferrooxidans ATCC 53993 6876066 YP_002218585.1 CDS Lferr_0117 NC_011206.1 112309 113193 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: zmo:ZMO0137 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 112309..113193 Acidithiobacillus ferrooxidans ATCC 53993 6876067 YP_002218586.1 CDS Lferr_0118 NC_011206.1 113529 113843 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(113529..113843) Acidithiobacillus ferrooxidans ATCC 53993 6876068 YP_002218587.1 CDS Lferr_0119 NC_011206.1 113965 115284 R KEGG: sma:SAV256 transposase; hypothetical protein complement(113965..115284) Acidithiobacillus ferrooxidans ATCC 53993 6876069 YP_002218588.1 CDS Lferr_0120 NC_011206.1 115525 116220 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dsh:Dshi_2521 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 115525..116220 Acidithiobacillus ferrooxidans ATCC 53993 6876070 YP_002218589.1 CDS Lferr_0121 NC_011206.1 116310 116516 D KEGG: swi:Swit_3731 hypothetical protein; hypothetical protein 116310..116516 Acidithiobacillus ferrooxidans ATCC 53993 6876071 YP_002218590.1 CDS Lferr_0122 NC_011206.1 116816 117169 D KEGG: rme:Rmet_1060 protein of unknown function DUF455; hypothetical protein 116816..117169 Acidithiobacillus ferrooxidans ATCC 53993 6876072 YP_002218591.1 CDS Lferr_0123 NC_011206.1 117162 118169 D KEGG: abo:ABO_2059 glycoprotease family protein; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 117162..118169 Acidithiobacillus ferrooxidans ATCC 53993 6876073 YP_002218592.1 CDS Lferr_0124 NC_011206.1 118169 118696 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: aae:aq_2197 hypothetical protein; hypothetical protein 118169..118696 Acidithiobacillus ferrooxidans ATCC 53993 6876074 YP_002218593.1 CDS Lferr_0125 NC_011206.1 118703 119299 R PFAM: protein of unknown function DUF205; KEGG: noc:Noc_0040 protein of unknown function DUF205; hypothetical protein complement(118703..119299) Acidithiobacillus ferrooxidans ATCC 53993 6876075 YP_002218594.1 CDS Lferr_0126 NC_011206.1 119372 119731 D TIGRFAM: dihydroneopterin aldolase; KEGG: sde:Sde_0723 dihydroneopterin aldolase; dihydroneopterin aldolase 119372..119731 Acidithiobacillus ferrooxidans ATCC 53993 6876076 YP_002218595.1 CDS rimO NC_011206.1 119749 121077 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(119749..121077) Acidithiobacillus ferrooxidans ATCC 53993 6876077 YP_002218596.1 CDS Lferr_0128 NC_011206.1 121095 122675 D PFAM: Resolvase domain; Recombinase; KEGG: pst:PSPTO_4018 hypothetical protein; Resolvase domain 121095..122675 Acidithiobacillus ferrooxidans ATCC 53993 6876078 YP_002218597.1 CDS Lferr_0129 NC_011206.1 122703 122993 R KEGG: pst:PSPTO_4011 hypothetical protein; hypothetical protein complement(122703..122993) Acidithiobacillus ferrooxidans ATCC 53993 6876079 YP_002218598.1 CDS Lferr_0130 NC_011206.1 122990 123085 R hypothetical protein complement(122990..123085) Acidithiobacillus ferrooxidans ATCC 53993 6876080 YP_002218599.1 CDS Lferr_0131 NC_011206.1 123085 123309 R hypothetical protein complement(123085..123309) Acidithiobacillus ferrooxidans ATCC 53993 6876081 YP_002218600.1 CDS Lferr_0132 NC_011206.1 123504 123794 D KEGG: apj:APJL_0499 hypothetical protein; hypothetical protein 123504..123794 Acidithiobacillus ferrooxidans ATCC 53993 6876082 YP_002218601.1 CDS Lferr_0133 NC_011206.1 123791 124138 D KEGG: apj:APJL_0498 hypothetical protein; hypothetical protein 123791..124138 Acidithiobacillus ferrooxidans ATCC 53993 6876083 YP_002218602.1 CDS Lferr_0134 NC_011206.1 124221 124679 R PFAM: helix-turn-helix domain protein; KEGG: ecw:EcE24377A_2252 putative transcriptional regulator DicA; XRE family transcriptional regulator complement(124221..124679) Acidithiobacillus ferrooxidans ATCC 53993 6876084 YP_002218603.1 CDS Lferr_0135 NC_011206.1 124730 124861 R hypothetical protein complement(124730..124861) Acidithiobacillus ferrooxidans ATCC 53993 6876085 YP_002218604.1 CDS Lferr_0136 NC_011206.1 125101 126162 D KEGG: nha:Nham_3348 hypothetical protein; hypothetical protein 125101..126162 Acidithiobacillus ferrooxidans ATCC 53993 6876086 YP_002218605.1 CDS Lferr_0137 NC_011206.1 126173 127027 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bpl:BURPS1106A_1434 DNA replication protein DnaC, putative; IstB domain-containing ATP-binding protein 126173..127027 Acidithiobacillus ferrooxidans ATCC 53993 6876087 YP_002218606.1 CDS Lferr_0138 NC_011206.1 127024 128220 D KEGG: dre:567929 similar to Apoptotic chromatin condensation inducer in the nucleus (Acinus); hypothetical protein 127024..128220 Acidithiobacillus ferrooxidans ATCC 53993 6876088 YP_002218607.1 CDS Lferr_0139 NC_011206.1 128217 129107 D PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cau:Caur_0075 D12 class N6 adenine-specific DNA methyltransferase; D12 class N6 adenine-specific DNA methyltransferase 128217..129107 Acidithiobacillus ferrooxidans ATCC 53993 6876089 YP_002218608.1 CDS Lferr_0140 NC_011206.1 129170 129664 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: net:Neut_2461 single-strand binding protein; ssDNA-binding protein 129170..129664 Acidithiobacillus ferrooxidans ATCC 53993 6876090 YP_002218609.1 CDS Lferr_0141 NC_011206.1 130607 131815 R KEGG: psa:PST_1472 hypothetical protein; hypothetical protein complement(130607..131815) Acidithiobacillus ferrooxidans ATCC 53993 6876091 YP_002218610.1 CDS Lferr_0142 NC_011206.1 131809 133446 R KEGG: bca:BCE_0186 hypothetical protein; hypothetical protein complement(131809..133446) Acidithiobacillus ferrooxidans ATCC 53993 6876092 YP_002218611.1 CDS Lferr_0143 NC_011206.1 133473 135074 R KEGG: ava:Ava_3495 Tn7-like transposition protein D; hypothetical protein complement(133473..135074) Acidithiobacillus ferrooxidans ATCC 53993 6876093 YP_002218612.1 CDS Lferr_0144 NC_011206.1 135071 136750 R KEGG: cth:Cthe_1115 Tn7-like transposition protein C; Tn7-like transposition protein C complement(135071..136750) Acidithiobacillus ferrooxidans ATCC 53993 6876094 YP_002218613.1 CDS Lferr_0145 NC_011206.1 136991 137407 R KEGG: ajs:Ajs_2731 transposase family protein; transposase family protein complement(136991..137407) Acidithiobacillus ferrooxidans ATCC 53993 6876095 YP_002218614.1 CDS Lferr_0146 NC_011206.1 137517 138020 R KEGG: pna:Pnap_4483 hypothetical protein; hypothetical protein complement(137517..138020) Acidithiobacillus ferrooxidans ATCC 53993 6876096 YP_002218615.1 CDS Lferr_0147 NC_011206.1 138282 138935 D PFAM: regulatory protein TetR; KEGG: hch:HCH_01739 transcriptional regulator; TetR family transcriptional regulator 138282..138935 Acidithiobacillus ferrooxidans ATCC 53993 6876097 YP_002218616.1 CDS Lferr_0148 NC_011206.1 138928 139215 D hypothetical protein 138928..139215 Acidithiobacillus ferrooxidans ATCC 53993 6876098 YP_002218617.1 CDS Lferr_0149 NC_011206.1 139270 140589 D KEGG: sma:SAV256 transposase; hypothetical protein 139270..140589 Acidithiobacillus ferrooxidans ATCC 53993 6876099 YP_002218618.1 CDS Lferr_0150 NC_011206.1 140711 141025 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 140711..141025 Acidithiobacillus ferrooxidans ATCC 53993 6876100 YP_002218619.1 CDS Lferr_0151 NC_011206.1 141169 141801 D KEGG: sil:SPOA0342 hypothetical protein; hypothetical protein 141169..141801 Acidithiobacillus ferrooxidans ATCC 53993 6876101 YP_002218620.1 CDS Lferr_0152 NC_011206.1 141847 143166 D PFAM: amine oxidase; KEGG: cte:CT1357 hypothetical protein; amine oxidase 141847..143166 Acidithiobacillus ferrooxidans ATCC 53993 6876102 YP_002218621.1 CDS Lferr_0153 NC_011206.1 143186 144202 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: hau:Haur_1207 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 143186..144202 Acidithiobacillus ferrooxidans ATCC 53993 6876103 YP_002218622.1 CDS Lferr_0154 NC_011206.1 144897 146084 R PFAM: Carbohydrate-selective porin OprB; KEGG: mex:Mext_1384 carbohydrate-selective porin OprB; carbohydrate-selective porin OprB complement(144897..146084) Acidithiobacillus ferrooxidans ATCC 53993 6876104 YP_002218623.1 CDS Lferr_0155 NC_011206.1 146114 146818 R PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter; MgtC/SapB transporter complement(146114..146818) Acidithiobacillus ferrooxidans ATCC 53993 6876105 YP_002218624.1 CDS Lferr_0156 NC_011206.1 146835 147035 R KEGG: acr:Acry_3565 hypothetical protein; hypothetical protein complement(146835..147035) Acidithiobacillus ferrooxidans ATCC 53993 6876106 YP_002218625.1 CDS Lferr_0157 NC_011206.1 147046 148416 R KEGG: acr:Acry_3564 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein complement(147046..148416) Acidithiobacillus ferrooxidans ATCC 53993 6876107 YP_002218626.1 CDS Lferr_0158 NC_011206.1 148603 148905 D hypothetical protein 148603..148905 Acidithiobacillus ferrooxidans ATCC 53993 6876108 YP_002218627.1 CDS Lferr_0159 NC_011206.1 148974 149381 R TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: mca:MCA1339 mercuric resistance operon regulatory protein; merR family transcriptional regulator complement(148974..149381) Acidithiobacillus ferrooxidans ATCC 53993 6876109 YP_002218628.1 CDS Lferr_0160 NC_011206.1 149482 149919 D PFAM: MerC mercury resistance protein; KEGG: sfr:Sfri_3489 MerC mercury resistance protein; mercury transport protein MerC 149482..149919 Acidithiobacillus ferrooxidans ATCC 53993 6876110 YP_002218629.1 CDS Lferr_0161 NC_011206.1 149933 151354 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: ajs:Ajs_1298 mercuric reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 149933..151354 Acidithiobacillus ferrooxidans ATCC 53993 6876111 YP_002218630.1 CDS Lferr_0162 NC_011206.1 151506 152192 R PFAM: Heavy metal transport/detoxification protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_1298 mercuric reductase; heavy metal transport/detoxification protein complement(151506..152192) Acidithiobacillus ferrooxidans ATCC 53993 6876112 YP_002218631.1 CDS Lferr_0163 NC_011206.1 152206 152643 R PFAM: MerC mercury resistance protein; KEGG: sfr:Sfri_3489 MerC mercury resistance protein; mercury transport protein MerC complement(152206..152643) Acidithiobacillus ferrooxidans ATCC 53993 6876113 YP_002218632.1 CDS Lferr_0164 NC_011206.1 152744 153151 D TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: ajs:Ajs_1301 putative transcriptional regulator, MerR family; merR family transcriptional regulator 152744..153151 Acidithiobacillus ferrooxidans ATCC 53993 6876114 YP_002218633.1 CDS Lferr_0165 NC_011206.1 153522 154436 R PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: mxa:MXAN_0456 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase GroES domain-containing protein complement(153522..154436) Acidithiobacillus ferrooxidans ATCC 53993 6876115 YP_002218634.1 CDS Lferr_0167 NC_011206.1 155529 157553 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: tbd:Tbd_2740 heavy metal translocating P-type ATPase; copper-translocating P-type ATPase complement(155529..157553) Acidithiobacillus ferrooxidans ATCC 53993 6876117 YP_002218635.1 CDS Lferr_0168 NC_011206.1 157841 158104 R KEGG: tbd:Tbd_2741 hypothetical protein; hypothetical protein complement(157841..158104) Acidithiobacillus ferrooxidans ATCC 53993 6876118 YP_002218636.1 CDS Lferr_0170 NC_011206.1 159251 160561 D PFAM: outer membrane efflux protein; KEGG: mca:MCA2262 outer membrane heavy metal efflux protein; outer membrane efflux protein 159251..160561 Acidithiobacillus ferrooxidans ATCC 53993 6876120 YP_002218637.1 CDS Lferr_0171 NC_011206.1 160558 161874 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: hch:HCH_03019 membrane-fusion protein; RND family efflux transporter MFP subunit 160558..161874 Acidithiobacillus ferrooxidans ATCC 53993 6876121 YP_002218638.1 CDS Lferr_0172 NC_011206.1 161867 164977 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: lpc:LPC_2243 cation efflux system protein CusA; CzcA family heavy metal efflux pump 161867..164977 Acidithiobacillus ferrooxidans ATCC 53993 6876122 YP_002218639.1 CDS Lferr_0173 NC_011206.1 165003 165749 D PFAM: cytochrome B561; KEGG: tbd:Tbd_0139 cytochrome b, putative; cytochrome B561 165003..165749 Acidithiobacillus ferrooxidans ATCC 53993 6876123 YP_002218640.1 CDS Lferr_0174 NC_011206.1 165878 166240 D KEGG: tbd:Tbd_1332 hypothetical protein; hypothetical protein 165878..166240 Acidithiobacillus ferrooxidans ATCC 53993 6876124 YP_002218641.1 CDS Lferr_0175 NC_011206.1 166355 166663 D hypothetical protein 166355..166663 Acidithiobacillus ferrooxidans ATCC 53993 6876125 YP_002218642.1 CDS Lferr_0176 NC_011206.1 166806 166982 R KEGG: eba:ebA3777 transposase; transposase complement(166806..166982) Acidithiobacillus ferrooxidans ATCC 53993 6876126 YP_002218643.1 CDS Lferr_0177 NC_011206.1 167196 168023 D KEGG: lpn:lpg1465 hypothetical protein; hypothetical protein 167196..168023 Acidithiobacillus ferrooxidans ATCC 53993 6876127 YP_002218644.1 CDS Lferr_0178 NC_011206.1 168476 168706 D hypothetical protein 168476..168706 Acidithiobacillus ferrooxidans ATCC 53993 6876128 YP_002218645.1 CDS Lferr_0179 NC_011206.1 168756 168959 D hypothetical protein 168756..168959 Acidithiobacillus ferrooxidans ATCC 53993 6876129 YP_002218646.1 CDS Lferr_0180 NC_011206.1 169230 169700 D KEGG: psa:PST_0673 ISPsy14, transposase; ISPsy14, transposase 169230..169700 Acidithiobacillus ferrooxidans ATCC 53993 6876130 YP_002218647.1 CDS Lferr_0181 NC_011206.1 169876 171033 D PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region; integrase catalytic subunit 169876..171033 Acidithiobacillus ferrooxidans ATCC 53993 6876131 YP_002218648.1 CDS Lferr_0182 NC_011206.1 171179 171448 D PFAM: helix-turn-helix domain protein; KEGG: vei:Veis_4348 hypothetical protein; XRE family transcriptional regulator 171179..171448 Acidithiobacillus ferrooxidans ATCC 53993 6876132 YP_002218649.1 CDS Lferr_0183 NC_011206.1 171700 174798 R PFAM: acriflavin resistance protein; KEGG: bte:BTH_II1184 heavy metal efflux pump CzcA, putative; acriflavin resistance protein complement(171700..174798) Acidithiobacillus ferrooxidans ATCC 53993 6876133 YP_002218650.1 CDS Lferr_0184 NC_011206.1 174839 175966 R KEGG: mfa:Mfla_1631 hypothetical protein; hypothetical protein complement(174839..175966) Acidithiobacillus ferrooxidans ATCC 53993 6876134 YP_002218651.1 CDS Lferr_0185 NC_011206.1 175963 177420 R PFAM: outer membrane efflux protein; KEGG: bte:BTH_II1186 divalent cation resistant determinant protein C, putative; outer membrane efflux protein complement(175963..177420) Acidithiobacillus ferrooxidans ATCC 53993 6876135 YP_002218652.1 CDS Lferr_0186 NC_011206.1 177420 179432 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: hau:Haur_3281 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(177420..179432) Acidithiobacillus ferrooxidans ATCC 53993 6876136 YP_002218653.1 CDS Lferr_0187 NC_011206.1 179462 179845 R PFAM: regulatory protein ArsR; KEGG: dar:Daro_2281 regulatory protein, ArsR; arsR family transcriptional regulator complement(179462..179845) Acidithiobacillus ferrooxidans ATCC 53993 6876137 YP_002218654.1 CDS Lferr_0188 NC_011206.1 180170 181318 D PFAM: aminotransferase class V; KEGG: sth:STH641 cysteine desulfurase; class V aminotransferase 180170..181318 Acidithiobacillus ferrooxidans ATCC 53993 6876138 YP_002218655.1 CDS Lferr_0189 NC_011206.1 181318 181959 D PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aeh:Mlg_0626 methyltransferase type 11; type 11 methyltransferase 181318..181959 Acidithiobacillus ferrooxidans ATCC 53993 6876139 YP_002218656.1 CDS Lferr_0190 NC_011206.1 182109 182792 R KEGG: eca:ECA3377 glutaredoxin 2; glutaredoxin complement(182109..182792) Acidithiobacillus ferrooxidans ATCC 53993 6876140 YP_002218657.1 CDS Lferr_0191 NC_011206.1 182923 183297 D PFAM: regulatory protein ArsR; KEGG: dar:Daro_0687 regulatory protein, ArsR; arsR family transcriptional regulator 182923..183297 Acidithiobacillus ferrooxidans ATCC 53993 6876141 YP_002218658.1 CDS Lferr_0192 NC_011206.1 183288 183533 D KEGG: aau:AAur_pTC10229 hypothetical protein; hypothetical protein 183288..183533 Acidithiobacillus ferrooxidans ATCC 53993 6876142 YP_002218659.1 CDS Lferr_0193 NC_011206.1 183550 184158 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mlo:mll2162 hypothetical protein; type 11 methyltransferase 183550..184158 Acidithiobacillus ferrooxidans ATCC 53993 6876143 YP_002218660.1 CDS Lferr_0194 NC_011206.1 184233 184730 D KEGG: nph:NP4404A hypothetical protein; hypothetical protein 184233..184730 Acidithiobacillus ferrooxidans ATCC 53993 6876144 YP_002218661.1 CDS Lferr_0195 NC_011206.1 184835 186019 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vok:COSY_0750 sulfide-quinone reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 184835..186019 Acidithiobacillus ferrooxidans ATCC 53993 6876145 YP_002218662.1 CDS Lferr_0196 NC_011206.1 186312 187421 R PFAM: transposase IS4 family protein; KEGG: bvi:Bcep1808_6138 transposase, IS4 family protein; transposase IS4 family protein complement(186312..187421) Acidithiobacillus ferrooxidans ATCC 53993 6876146 YP_002218663.1 CDS Lferr_0197 NC_011206.1 187640 187849 R KEGG: rrs:RoseRS_1945 hypothetical protein; hypothetical protein complement(187640..187849) Acidithiobacillus ferrooxidans ATCC 53993 6876147 YP_002218664.1 CDS Lferr_0198 NC_011206.1 187846 188259 R KEGG: rrs:RoseRS_1944 hypothetical protein; hypothetical protein complement(187846..188259) Acidithiobacillus ferrooxidans ATCC 53993 6876148 YP_002218665.1 CDS Lferr_0199 NC_011206.1 188597 188971 R KEGG: tbd:Tbd_1332 hypothetical protein; hypothetical protein complement(188597..188971) Acidithiobacillus ferrooxidans ATCC 53993 6876149 YP_002218666.1 CDS Lferr_0200 NC_011206.1 189317 190834 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmn:PMN2A_1233 TPR repeat; hypothetical protein complement(189317..190834) Acidithiobacillus ferrooxidans ATCC 53993 6876150 YP_002218667.1 CDS Lferr_0201 NC_011206.1 191343 191657 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(191343..191657) Acidithiobacillus ferrooxidans ATCC 53993 6876151 YP_002218668.1 CDS Lferr_0202 NC_011206.1 191779 193098 R KEGG: sma:SAV256 transposase; hypothetical protein complement(191779..193098) Acidithiobacillus ferrooxidans ATCC 53993 6876152 YP_002218669.1 CDS Lferr_0203 NC_011206.1 193249 194439 R KEGG: mrd:Mrad2831_2268 hypothetical protein; hypothetical protein complement(193249..194439) Acidithiobacillus ferrooxidans ATCC 53993 6876153 YP_002218670.1 CDS Lferr_0204 NC_011206.1 194699 195004 D KEGG: gur:Gura_0895 protein of unknown function DUF214; hypothetical protein 194699..195004 Acidithiobacillus ferrooxidans ATCC 53993 6876154 YP_002218671.1 CDS Lferr_0205 NC_011206.1 194997 195698 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU0678 ABC transporter, ATP-binding protein; ABC transporter-like protein 194997..195698 Acidithiobacillus ferrooxidans ATCC 53993 6876155 YP_002218672.1 CDS Lferr_0206 NC_011206.1 195688 196191 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mfa:Mfla_0475 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin domain-containing protein 195688..196191 Acidithiobacillus ferrooxidans ATCC 53993 6876156 YP_002218673.1 CDS Lferr_0207 NC_011206.1 196205 196660 D KEGG: dar:Daro_2623 thioredoxin:cytochrome c biogenesis protein transmembrane region; thioredoxin:cytochrome c biogenesis protein transmembrane region 196205..196660 Acidithiobacillus ferrooxidans ATCC 53993 6876157 YP_002218674.1 CDS Lferr_0208 NC_011206.1 196917 197318 D PFAM: regulatory protein ArsR; KEGG: mja:MJ1325 cadmium resistance protein; arsR family transcriptional regulator 196917..197318 Acidithiobacillus ferrooxidans ATCC 53993 6876158 YP_002218675.1 CDS Lferr_0209 NC_011206.1 197318 199225 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: lpn:lpg1010 cadmium efflux ATPase; heavy metal translocating P-type ATPase 197318..199225 Acidithiobacillus ferrooxidans ATCC 53993 6876159 YP_002218676.1 CDS Lferr_0210 NC_011206.1 199264 199656 D PFAM: protein of unknown function DUF302; KEGG: lpp:lpp2368 hypothetical protein; hypothetical protein 199264..199656 Acidithiobacillus ferrooxidans ATCC 53993 6876160 YP_002218677.1 CDS Lferr_0211 NC_011206.1 199712 199951 D KEGG: tbd:Tbd_0648 hypothetical protein; hypothetical protein 199712..199951 Acidithiobacillus ferrooxidans ATCC 53993 6876161 YP_002218678.1 CDS Lferr_0213 NC_011206.1 201226 201552 D KEGG: azo:azo0363 putative ferredoxin 2Fe-2S protein; putative ferredoxin 2Fe-2S protein 201226..201552 Acidithiobacillus ferrooxidans ATCC 53993 6876163 YP_002218679.1 CDS Lferr_0214 NC_011206.1 201687 202172 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bmu:Bmul_0131 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein 201687..202172 Acidithiobacillus ferrooxidans ATCC 53993 6876164 YP_002218680.1 CDS Lferr_0215 NC_011206.1 202263 203846 D PFAM: Integrase catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit 202263..203846 Acidithiobacillus ferrooxidans ATCC 53993 6876165 YP_002218681.1 CDS Lferr_0216 NC_011206.1 203843 204613 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pna:Pnap_2464 IstB domain protein ATP-binding protein; IstB domain-containing ATP-binding protein 203843..204613 Acidithiobacillus ferrooxidans ATCC 53993 6876166 YP_002218682.1 CDS Lferr_0217 NC_011206.1 204704 205024 D KEGG: tbd:Tbd_1194 hypothetical protein; hypothetical protein 204704..205024 Acidithiobacillus ferrooxidans ATCC 53993 6876167 YP_002218683.1 CDS Lferr_0218 NC_011206.1 205275 205529 R hypothetical protein complement(205275..205529) Acidithiobacillus ferrooxidans ATCC 53993 6876168 YP_002218684.1 CDS Lferr_0219 NC_011206.1 205567 206013 R KEGG: dol:Dole_0430 hypothetical protein; hypothetical protein complement(205567..206013) Acidithiobacillus ferrooxidans ATCC 53993 6876169 YP_002218685.1 CDS Lferr_0220 NC_011206.1 206171 206533 D KEGG: eba:p2A255 transposion helper protein, ATP-binding protein; hypothetical protein 206171..206533 Acidithiobacillus ferrooxidans ATCC 53993 6876170 YP_002218686.1 CDS Lferr_0221 NC_011206.1 206554 208740 R KEGG: bca:BCE_0183 Tn7-like transposition protein B; Tn7-like transposition protein B complement(206554..208740) Acidithiobacillus ferrooxidans ATCC 53993 6876171 YP_002218687.1 CDS Lferr_0222 NC_011206.1 208744 209589 R PFAM: TnsA endonuclease; KEGG: hau:Haur_3949 TnsA endonuclease; TnsA endonuclease complement(208744..209589) Acidithiobacillus ferrooxidans ATCC 53993 6876172 YP_002218688.1 CDS Lferr_0223 NC_011206.1 209714 210067 R KEGG: pap:PSPA7_6043 hypothetical protein; hypothetical protein complement(209714..210067) Acidithiobacillus ferrooxidans ATCC 53993 6876173 YP_002218689.1 CDS Lferr_0224 NC_011206.1 210058 210462 R KEGG: neu:NE2100 hypothetical protein; hypothetical protein complement(210058..210462) Acidithiobacillus ferrooxidans ATCC 53993 6876174 YP_002218690.1 CDS Lferr_0225 NC_011206.1 210455 211240 R KEGG: tde:TDE1618 hypothetical protein; hypothetical protein complement(210455..211240) Acidithiobacillus ferrooxidans ATCC 53993 6876175 YP_002218691.1 CDS Lferr_0226 NC_011206.1 211285 213567 R PFAM: type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: cch:Cag_0810 DEAD/DEAH box helicase-like; type III restriction protein res subunit complement(211285..213567) Acidithiobacillus ferrooxidans ATCC 53993 6876176 YP_002218692.1 CDS Lferr_0227 NC_011206.1 213578 214765 R PFAM: restriction modification system DNA specificity domain; KEGG: cch:Cag_1122 restriction endonuclease S subunits-like; restriction modification system DNA specificity protein complement(213578..214765) Acidithiobacillus ferrooxidans ATCC 53993 6876177 YP_002218693.1 CDS Lferr_0228 NC_011206.1 214762 216216 R PFAM: N-6 DNA methylase; KEGG: cch:Cag_0807 DNA-methyltransferase, type I restriction-modification enzyme subunit M; N-6 DNA methylase complement(214762..216216) Acidithiobacillus ferrooxidans ATCC 53993 6876178 YP_002218694.1 CDS Lferr_0229 NC_011206.1 216318 216692 R PFAM: PilT protein domain protein; KEGG: gur:Gura_3863 PilT protein domain protein; PilT protein domain-containing protein complement(216318..216692) Acidithiobacillus ferrooxidans ATCC 53993 6876179 YP_002218695.1 CDS Lferr_0230 NC_011206.1 216689 216886 R KEGG: bur:Bcep18194_B0330 hypothetical protein; hypothetical protein complement(216689..216886) Acidithiobacillus ferrooxidans ATCC 53993 6876180 YP_002218696.1 CDS Lferr_0231 NC_011206.1 217281 217469 R hypothetical protein complement(217281..217469) Acidithiobacillus ferrooxidans ATCC 53993 6876181 YP_002218697.1 CDS Lferr_0232 NC_011206.1 217862 218302 D SMART: phospholipid/glycerol acyltransferase; KEGG: spt:SPA2875 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; phospholipid/glycerol acyltransferase 217862..218302 Acidithiobacillus ferrooxidans ATCC 53993 6876182 YP_002218698.1 CDS Lferr_0233 NC_011206.1 218478 219050 R KEGG: mca:MCA2638 hypothetical protein; hypothetical protein complement(218478..219050) Acidithiobacillus ferrooxidans ATCC 53993 6876183 YP_002218699.1 CDS Lferr_0234 NC_011206.1 219051 219515 R TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: mca:MCA2639 hypothetical protein; excisionase family DNA-binding domain-containing protein complement(219051..219515) Acidithiobacillus ferrooxidans ATCC 53993 6876184 YP_002218700.1 CDS Lferr_0235 NC_011206.1 219948 225098 D PFAM: domain of unknown function DUF1738; KEGG: net:Neut_2602 hypothetical protein; hypothetical protein 219948..225098 Acidithiobacillus ferrooxidans ATCC 53993 6876185 YP_002218701.1 CDS Lferr_0236 NC_011206.1 225160 225798 D hypothetical protein 225160..225798 Acidithiobacillus ferrooxidans ATCC 53993 6876186 YP_002218702.1 CDS Lferr_0237 NC_011206.1 225806 226345 D hypothetical protein 225806..226345 Acidithiobacillus ferrooxidans ATCC 53993 6876187 YP_002218703.1 CDS Lferr_0238 NC_011206.1 226342 226620 D hypothetical protein 226342..226620 Acidithiobacillus ferrooxidans ATCC 53993 6876188 YP_002218704.1 CDS Lferr_0239 NC_011206.1 226631 227005 D hypothetical protein 226631..227005 Acidithiobacillus ferrooxidans ATCC 53993 6876189 YP_002218705.1 CDS Lferr_0240 NC_011206.1 226995 228848 D KEGG: cph:Cpha266_2600 hypothetical protein; hypothetical protein 226995..228848 Acidithiobacillus ferrooxidans ATCC 53993 6876190 YP_002218706.1 CDS Lferr_0241 NC_011206.1 228913 229755 D hypothetical protein 228913..229755 Acidithiobacillus ferrooxidans ATCC 53993 6876191 YP_002218707.1 CDS Lferr_0242 NC_011206.1 229752 231332 D KEGG: rpc:RPC_3904 hypothetical protein; Type IV secretory pathway VirD2 pilin (relaxase)-like protein 229752..231332 Acidithiobacillus ferrooxidans ATCC 53993 6876192 YP_002218708.1 CDS Lferr_0243 NC_011206.1 231404 231856 D hypothetical protein 231404..231856 Acidithiobacillus ferrooxidans ATCC 53993 6876193 YP_002218709.1 CDS Lferr_0244 NC_011206.1 231853 232821 D TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: net:Neut_2555 type II secretion system protein E; P-type conjugative transfer ATPase TrbB 231853..232821 Acidithiobacillus ferrooxidans ATCC 53993 6876194 YP_002218710.1 CDS Lferr_0245 NC_011206.1 232898 233284 D PFAM: Conjugal transfer protein TrbC; KEGG: bcs:BCAN_B0369 P-type conjugative transfer protein TrbL; conjugal transfer protein TrbC 232898..233284 Acidithiobacillus ferrooxidans ATCC 53993 6876195 YP_002218711.1 CDS Lferr_0246 NC_011206.1 233288 233665 D KEGG: pna:Pnap_2502 conjugal transfer TrbD family protein; hypothetical protein 233288..233665 Acidithiobacillus ferrooxidans ATCC 53993 6876196 YP_002218712.1 CDS Lferr_0247 NC_011206.1 233665 236187 D PFAM: CagE TrbE VirB component of type IV transporter system; SMART: AAA ATPase; KEGG: smd:Smed_5379 type IV secretion/conjugal transfer ATPase, VirB4 family; V transporter system protein CagE/TrbE/VirB 233665..236187 Acidithiobacillus ferrooxidans ATCC 53993 6876197 YP_002218713.1 CDS Lferr_0248 NC_011206.1 236184 237347 D hypothetical protein 236184..237347 Acidithiobacillus ferrooxidans ATCC 53993 6876198 YP_002218714.1 CDS Lferr_0249 NC_011206.1 237429 238169 D TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: bms:BRA0368 TrbJ protein; P-type conjugative transfer protein TrbJ 237429..238169 Acidithiobacillus ferrooxidans ATCC 53993 6876199 YP_002218715.1 CDS Lferr_0250 NC_011206.1 238181 238435 D hypothetical protein 238181..238435 Acidithiobacillus ferrooxidans ATCC 53993 6876200 YP_002218716.1 CDS Lferr_0251 NC_011206.1 238449 240140 D TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: aav:Aave_0395 TrbL/VirB6 plasmid conjugal transfer protein; P-type conjugative transfer protein TrbL 238449..240140 Acidithiobacillus ferrooxidans ATCC 53993 6876201 YP_002218717.1 CDS Lferr_0252 NC_011206.1 240217 240615 D hypothetical protein 240217..240615 Acidithiobacillus ferrooxidans ATCC 53993 6876202 YP_002218718.1 CDS Lferr_0253 NC_011206.1 240612 240953 D PFAM: protein of unknown function DUF167; KEGG: tbd:Tbd_2620 hypothetical protein; hypothetical protein 240612..240953 Acidithiobacillus ferrooxidans ATCC 53993 6876203 YP_002218719.1 CDS Lferr_0254 NC_011206.1 241275 242114 D KEGG: tcx:Tcr_0366 TIR; TIR (Toll-Interleukin 1-resistance) domain-containing protein-like protein 241275..242114 Acidithiobacillus ferrooxidans ATCC 53993 6876204 YP_002218720.1 CDS Lferr_0255 NC_011206.1 242238 243125 R hypothetical protein complement(242238..243125) Acidithiobacillus ferrooxidans ATCC 53993 6876205 YP_002218721.1 CDS Lferr_0256 NC_011206.1 243472 244140 D KEGG: nha:Nham_4562 conjugal transfer protein; conjugal transfer protein 243472..244140 Acidithiobacillus ferrooxidans ATCC 53993 6876206 YP_002218722.1 CDS Lferr_0257 NC_011206.1 244153 245253 D PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pna:Pnap_2510 conjugal transfer protein TrbG/VirB9/CagX; conjugal transfer protein TrbG/VirB9/CagX 244153..245253 Acidithiobacillus ferrooxidans ATCC 53993 6876207 YP_002218723.1 CDS Lferr_0258 NC_011206.1 245255 246265 D KEGG: cak:Caul_2034 P-type conjugative transfer protein TrbG; hypothetical protein 245255..246265 Acidithiobacillus ferrooxidans ATCC 53993 6876208 YP_002218724.1 CDS Lferr_0259 NC_011206.1 246268 247677 D PFAM: conjugation TrbI family protein; KEGG: nha:Nham_4559 conjugation TrbI-like protein; conjugation TrbI family protein 246268..247677 Acidithiobacillus ferrooxidans ATCC 53993 6876209 YP_002218725.1 CDS Lferr_0260 NC_011206.1 247688 247990 D hypothetical protein 247688..247990 Acidithiobacillus ferrooxidans ATCC 53993 6876210 YP_002218726.1 CDS Lferr_0261 NC_011206.1 247987 248664 D PFAM: Lytic transglycosylase catalytic; KEGG: acr:Acry_3520 lytic transglycosylase, catalytic; Lytic transglycosylase 247987..248664 Acidithiobacillus ferrooxidans ATCC 53993 6876211 YP_002218727.1 CDS Lferr_0262 NC_011206.1 248675 251104 D PFAM: TRAG family protein; KEGG: eba:p2B19 conjugal transfer protein TraG; TRAG family protein 248675..251104 Acidithiobacillus ferrooxidans ATCC 53993 6876212 YP_002218728.1 CDS Lferr_0263 NC_011206.1 251433 251621 D KEGG: vei:Veis_4340 hypothetical protein; hypothetical protein 251433..251621 Acidithiobacillus ferrooxidans ATCC 53993 6876213 YP_002218729.1 CDS Lferr_0264 NC_011206.1 251621 251917 D PFAM: plasmid stabilization system; KEGG: vei:Veis_4341 plasmid stabilization system; plasmid stabilization system 251621..251917 Acidithiobacillus ferrooxidans ATCC 53993 6876214 YP_002218730.1 CDS Lferr_0266 NC_011206.1 253330 254967 R PFAM: transposase IS66; KEGG: bte:BTH_I1449 TnpC protein; transposase IS66 complement(253330..254967) Acidithiobacillus ferrooxidans ATCC 53993 6876216 YP_002218731.1 CDS Lferr_0267 NC_011206.1 255017 255364 R PFAM: IS66 Orf2 family protein; KEGG: bte:BTH_I2736 TnpB protein; IS66 Orf2 family protein complement(255017..255364) Acidithiobacillus ferrooxidans ATCC 53993 6876217 YP_002218732.1 CDS Lferr_0268 NC_011206.1 255355 255687 R KEGG: bpt:Bpet1150 hypothetical protein; hypothetical protein complement(255355..255687) Acidithiobacillus ferrooxidans ATCC 53993 6876218 YP_002218733.1 CDS Lferr_0270 NC_011206.1 257291 258190 R KEGG: tvo:TVN0813 predicted phospholipase D; phospholipase D complement(257291..258190) Acidithiobacillus ferrooxidans ATCC 53993 6876220 YP_002218734.1 CDS Lferr_0271 NC_011206.1 258518 258775 R hypothetical protein complement(258518..258775) Acidithiobacillus ferrooxidans ATCC 53993 6876221 YP_002218735.1 CDS Lferr_0272 NC_011206.1 258859 260097 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sth:STH3332 ParBc, ParB-like nuclease domain; parB-like partition protein complement(258859..260097) Acidithiobacillus ferrooxidans ATCC 53993 6876222 YP_002218736.1 CDS Lferr_0273 NC_011206.1 260099 260869 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xfa:XFa0060 plasmid replication protein; cobyrinic acid ac-diamide synthase complement(260099..260869) Acidithiobacillus ferrooxidans ATCC 53993 6876223 YP_002218737.1 CDS Lferr_0274 NC_011206.1 260872 261267 R hypothetical protein complement(260872..261267) Acidithiobacillus ferrooxidans ATCC 53993 6876224 YP_002218738.1 CDS Lferr_0275 NC_011206.1 261316 261627 R hypothetical protein complement(261316..261627) Acidithiobacillus ferrooxidans ATCC 53993 6876225 YP_002218739.1 CDS Lferr_0276 NC_011206.1 261781 262371 R KEGG: gdi:GDI0110 putative conjugal transfer protein TraF; Type IV secretory pathway protease TraF-like protein complement(261781..262371) Acidithiobacillus ferrooxidans ATCC 53993 6876226 YP_002218740.1 CDS Lferr_0277 NC_011206.1 262343 262555 R hypothetical protein complement(262343..262555) Acidithiobacillus ferrooxidans ATCC 53993 6876227 YP_002218741.1 CDS Lferr_0279 NC_011206.1 262844 264202 R PFAM: TraB family protein; KEGG: nha:Nham_4542 TraB; conjugal transfer protein TraB complement(262844..264202) Acidithiobacillus ferrooxidans ATCC 53993 6876229 YP_002218742.1 CDS Lferr_0280 NC_011206.1 264199 264792 R KEGG: dac:Daci_5760 phosphate acetyltransferase; hypothetical protein complement(264199..264792) Acidithiobacillus ferrooxidans ATCC 53993 6876230 YP_002218743.1 CDS Lferr_0282 NC_011206.1 265276 265572 D TIGRFAM: addiction module antidote protein; KEGG: rru:Rru_A0456 predicted transcriptional regulator; transcriptional regulator 265276..265572 Acidithiobacillus ferrooxidans ATCC 53993 6876232 YP_002218744.1 CDS Lferr_0283 NC_011206.1 266349 268403 R KEGG: eba:p2B17 TraE protein (DNA topoisomerase); TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase III complement(266349..268403) Acidithiobacillus ferrooxidans ATCC 53993 6876233 YP_002218745.1 CDS Lferr_0284 NC_011206.1 268616 268861 R hypothetical protein complement(268616..268861) Acidithiobacillus ferrooxidans ATCC 53993 6876234 YP_002218746.1 CDS Lferr_0285 NC_011206.1 268864 269637 R SMART: protein phosphatase 2C domain protein; KEGG: hmo:HM1_2137 protein serine/threonine phosphatase, putative; protein serine/threonine phosphatase complement(268864..269637) Acidithiobacillus ferrooxidans ATCC 53993 6876235 YP_002218747.1 CDS Lferr_0286 NC_011206.1 270086 270589 D hypothetical protein 270086..270589 Acidithiobacillus ferrooxidans ATCC 53993 6876236 YP_002218748.1 CDS Lferr_0287 NC_011206.1 270589 272049 D KEGG: mca:MCA1608 hypothetical protein; hypothetical protein 270589..272049 Acidithiobacillus ferrooxidans ATCC 53993 6876237 YP_002218749.1 CDS Lferr_0288 NC_011206.1 272042 273073 D KEGG: psa:PST_3457 transcriptional factor MdcH; transcriptional factor MdcH 272042..273073 Acidithiobacillus ferrooxidans ATCC 53993 6876238 YP_002218750.1 CDS Lferr_0289 NC_011206.1 273095 273844 D PFAM: protein of unknown function DUF262; KEGG: bra:BRADO6127 hypothetical protein; hypothetical protein 273095..273844 Acidithiobacillus ferrooxidans ATCC 53993 6876239 YP_002218751.1 CDS Lferr_0290 NC_011206.1 273853 275316 D hypothetical protein 273853..275316 Acidithiobacillus ferrooxidans ATCC 53993 6876240 YP_002218752.1 CDS Lferr_0291 NC_011206.1 275638 276117 D KEGG: mem:Memar_2486 hypothetical protein; hypothetical protein 275638..276117 Acidithiobacillus ferrooxidans ATCC 53993 6876241 YP_002218753.1 CDS Lferr_0292 NC_011206.1 276869 277819 D KEGG: stm:STM3845 putative inner membrane protein; hypothetical protein 276869..277819 Acidithiobacillus ferrooxidans ATCC 53993 6876242 YP_002218754.1 CDS Lferr_0293 NC_011206.1 277816 278763 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: mmw:Mmwyl1_2428 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 277816..278763 Acidithiobacillus ferrooxidans ATCC 53993 6876243 YP_002218755.1 CDS Lferr_0294 NC_011206.1 278957 281278 D KEGG: bxe:Bxe_A1800 predicted ATP-dependent endonuclease, OLD family; ATP-dependent endonuclease, OLD family 278957..281278 Acidithiobacillus ferrooxidans ATCC 53993 6876244 YP_002218756.1 CDS Lferr_0295 NC_011206.1 281275 283164 D KEGG: bxe:Bxe_A1801 hypothetical protein; hypothetical protein 281275..283164 Acidithiobacillus ferrooxidans ATCC 53993 6876245 YP_002218757.1 CDS Lferr_0296 NC_011206.1 283488 283793 R hypothetical protein complement(283488..283793) Acidithiobacillus ferrooxidans ATCC 53993 6876246 YP_002218758.1 CDS Lferr_0297 NC_011206.1 283968 284141 D hypothetical protein 283968..284141 Acidithiobacillus ferrooxidans ATCC 53993 6876247 YP_002218759.1 CDS Lferr_0298 NC_011206.1 284128 284658 D hypothetical protein 284128..284658 Acidithiobacillus ferrooxidans ATCC 53993 6876248 YP_002218760.1 CDS Lferr_0299 NC_011206.1 284755 285138 R PFAM: nitrogen-fixing NifU domain protein; KEGG: dol:Dole_0085 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein complement(284755..285138) Acidithiobacillus ferrooxidans ATCC 53993 6876249 YP_002218761.1 CDS Lferr_0300 NC_011206.1 285144 285884 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eba:ebA3368 pteridine reductase; short-chain dehydrogenase/reductase SDR complement(285144..285884) Acidithiobacillus ferrooxidans ATCC 53993 6876250 YP_002218762.1 CDS Lferr_0301 NC_011206.1 285894 287021 D PFAM: protein of unknown function DUF185; KEGG: tbd:Tbd_2702 hypothetical protein; hypothetical protein 285894..287021 Acidithiobacillus ferrooxidans ATCC 53993 6876251 YP_002218763.1 CDS Lferr_0302 NC_011206.1 287124 288059 R KEGG: dge:Dgeo_0583 membrane protein; hypothetical protein complement(287124..288059) Acidithiobacillus ferrooxidans ATCC 53993 6876252 YP_002218764.1 CDS Lferr_0303 NC_011206.1 288537 289856 D KEGG: sma:SAV256 transposase; hypothetical protein 288537..289856 Acidithiobacillus ferrooxidans ATCC 53993 6876253 YP_002218765.1 CDS Lferr_0304 NC_011206.1 289978 290292 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 289978..290292 Acidithiobacillus ferrooxidans ATCC 53993 6876254 YP_002218766.1 CDS Lferr_0305 NC_011206.1 290591 291982 R KEGG: pfo:Pfl_1813 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(290591..291982) Acidithiobacillus ferrooxidans ATCC 53993 6876255 YP_002218767.1 CDS Lferr_0306 NC_011206.1 292020 292952 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mca:MCA2261 transcriptional regulator MetR; LysR family transcriptional regulator complement(292020..292952) Acidithiobacillus ferrooxidans ATCC 53993 6876256 YP_002218768.1 CDS Lferr_0307 NC_011206.1 293188 294030 D KEGG: acr:Acry_0114 hypothetical protein; hypothetical protein 293188..294030 Acidithiobacillus ferrooxidans ATCC 53993 6876257 YP_002218769.1 CDS Lferr_0308 NC_011206.1 294198 294512 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(294198..294512) Acidithiobacillus ferrooxidans ATCC 53993 6876258 YP_002218770.1 CDS Lferr_0309 NC_011206.1 294634 295953 R KEGG: sma:SAV256 transposase; hypothetical protein complement(294634..295953) Acidithiobacillus ferrooxidans ATCC 53993 6876259 YP_002218771.1 CDS Lferr_0310 NC_011206.1 296038 296586 D KEGG: acr:Acry_0114 hypothetical protein; hypothetical protein 296038..296586 Acidithiobacillus ferrooxidans ATCC 53993 6876260 YP_002218772.1 CDS Lferr_0311 NC_011206.1 296660 297790 R TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: aeh:Mlg_2792 lipopolysaccharide heptosyltransferase II; lipopolysaccharide heptosyltransferase II complement(296660..297790) Acidithiobacillus ferrooxidans ATCC 53993 6876261 YP_002218773.1 CDS Lferr_0312 NC_011206.1 297792 298556 R KEGG: olu:OSTLU_40884 predicted protein; hypothetical protein complement(297792..298556) Acidithiobacillus ferrooxidans ATCC 53993 6876262 YP_002218774.1 CDS Lferr_0313 NC_011206.1 298560 299945 R PFAM: FAD linked oxidase domain protein; KEGG: tbd:Tbd_1998 oxidoreductase, FAD-binding; FAD linked oxidase domain-containing protein complement(298560..299945) Acidithiobacillus ferrooxidans ATCC 53993 6876263 YP_002218775.1 CDS Lferr_0314 NC_011206.1 299942 301018 R TIGRFAM: phosphoheptose isomerase; cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: sugar isomerase (SIS); cytidylyltransferase; KEGG: reh:H16_A3578 sedoheptulose 7-phosphate isomerase; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(299942..301018) Acidithiobacillus ferrooxidans ATCC 53993 6876264 YP_002218776.1 CDS Lferr_0315 NC_011206.1 301015 301380 R PFAM: protein of unknown function UPF0102; KEGG: ppg:PputGB1_4524 protein of unknown function UPF0102; hypothetical protein complement(301015..301380) Acidithiobacillus ferrooxidans ATCC 53993 6876265 YP_002218777.1 CDS Lferr_0316 NC_011206.1 301384 303222 R KEGG: noc:Noc_0356 LppC putative lipoprotein; lipoprotein-like protein complement(301384..303222) Acidithiobacillus ferrooxidans ATCC 53993 6876266 YP_002218778.1 CDS Lferr_0317 NC_011206.1 303292 304167 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: eba:ebA1457 conserved hypothetical protein, predicted methyltransferase; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 303292..304167 Acidithiobacillus ferrooxidans ATCC 53993 6876267 YP_002218779.1 CDS Lferr_0318 NC_011206.1 304564 304680 R hypothetical protein complement(304564..304680) Acidithiobacillus ferrooxidans ATCC 53993 6876269 YP_002218780.1 CDS Lferr_0319 NC_011206.1 304697 304942 R KEGG: dol:Dole_3056 hypothetical protein; hypothetical protein complement(304697..304942) Acidithiobacillus ferrooxidans ATCC 53993 6876270 YP_002218781.1 CDS Lferr_0320 NC_011206.1 305214 305723 R hypothetical protein complement(305214..305723) Acidithiobacillus ferrooxidans ATCC 53993 6876271 YP_002218782.1 CDS Lferr_0321 NC_011206.1 305753 306547 R KEGG: eba:ebA4197 putative transferase; transferase complement(305753..306547) Acidithiobacillus ferrooxidans ATCC 53993 6876272 YP_002218783.1 CDS Lferr_0322 NC_011206.1 306662 307060 R PFAM: Rhodanese domain protein; KEGG: tbd:Tbd_0235 rhodanese-like protein; rhodanese domain-containing protein complement(306662..307060) Acidithiobacillus ferrooxidans ATCC 53993 6876273 YP_002218784.1 CDS Lferr_0323 NC_011206.1 307229 307432 R hypothetical protein complement(307229..307432) Acidithiobacillus ferrooxidans ATCC 53993 6876274 YP_002218785.1 CDS Lferr_0324 NC_011206.1 307443 308282 R SMART: AAA ATPase; KEGG: bxe:Bxe_C0709 putative ATPase; ATPase AAA complement(307443..308282) Acidithiobacillus ferrooxidans ATCC 53993 6876275 YP_002218786.1 CDS Lferr_0325 NC_011206.1 308286 308813 R KEGG: bxe:Bxe_C0710 putative integrase; integrase complement(308286..308813) Acidithiobacillus ferrooxidans ATCC 53993 6876276 YP_002218787.1 CDS Lferr_0326 NC_011206.1 309036 310280 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pol:Bpro_0711 phage integrase; integrase family protein 309036..310280 Acidithiobacillus ferrooxidans ATCC 53993 6876277 YP_002218788.1 CDS Lferr_0327 NC_011206.1 310277 311218 D PFAM: integrase family protein; KEGG: pol:Bpro_0712 phage integrase; integrase family protein 310277..311218 Acidithiobacillus ferrooxidans ATCC 53993 6876278 YP_002218789.1 CDS Lferr_0328 NC_011206.1 311211 312209 D PFAM: integrase family protein; KEGG: pol:Bpro_0713 phage integrase; integrase family protein 311211..312209 Acidithiobacillus ferrooxidans ATCC 53993 6876279 YP_002218790.1 CDS Lferr_0329 NC_011206.1 312284 313144 R KEGG: rme:Rmet_6335 integrase, catalytic region; integrase catalytic subunit complement(312284..313144) Acidithiobacillus ferrooxidans ATCC 53993 6876280 YP_002218791.1 CDS Lferr_0330 NC_011206.1 313278 313826 R KEGG: bxe:Bxe_C0711 hypothetical protein; hypothetical protein complement(313278..313826) Acidithiobacillus ferrooxidans ATCC 53993 6876281 YP_002218792.1 CDS Lferr_0331 NC_011206.1 313968 314345 R PFAM: protein of unknown function DUF423; KEGG: noc:Noc_2079 protein of unknown function DUF423; hypothetical protein complement(313968..314345) Acidithiobacillus ferrooxidans ATCC 53993 6876282 YP_002218793.1 CDS Lferr_0332 NC_011206.1 314534 315226 D PFAM: protein of unknown function DUF125 transmembrane; KEGG: har:HEAR1441 conserved hypothetical protein, putative membrane protein; hypothetical protein 314534..315226 Acidithiobacillus ferrooxidans ATCC 53993 6876283 YP_002218794.1 CDS Lferr_0333 NC_011206.1 315478 316134 D PFAM: major intrinsic protein; KEGG: bca:BCE_A0165 MIP family channel protein; major intrinsic protein 315478..316134 Acidithiobacillus ferrooxidans ATCC 53993 6876284 YP_002218795.1 CDS Lferr_0334 NC_011206.1 316302 316907 D PFAM: Phosphoglycerate mutase; KEGG: sma:SAV5245 mutase; phosphoglycerate mutase 316302..316907 Acidithiobacillus ferrooxidans ATCC 53993 6876285 YP_002218796.1 CDS Lferr_0335 NC_011206.1 316938 317774 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(316938..317774) Acidithiobacillus ferrooxidans ATCC 53993 6876286 YP_002218797.1 CDS Lferr_0336 NC_011206.1 317890 318291 R TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: lbl:LBL_4244 adenosylmethionine decarboxylase; S-adenosylmethionine decarboxylase complement(317890..318291) Acidithiobacillus ferrooxidans ATCC 53993 6876287 YP_002218798.1 CDS Lferr_0337 NC_011206.1 318611 319435 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_2223 ABC transporter related; ABC transporter-like protein 318611..319435 Acidithiobacillus ferrooxidans ATCC 53993 6876288 YP_002218799.1 CDS Lferr_0338 NC_011206.1 319438 320220 D PFAM: protein of unknown function DUF140; KEGG: nmu:Nmul_A2748 protein of unknown function DUF140; hypothetical protein 319438..320220 Acidithiobacillus ferrooxidans ATCC 53993 6876289 YP_002218800.1 CDS Lferr_0339 NC_011206.1 320235 320693 D PFAM: Mammalian cell entry related domain protein; KEGG: rme:Rmet_3257 mammalian cell entry related; mammalian cell entry domain-containing protein 320235..320693 Acidithiobacillus ferrooxidans ATCC 53993 6876290 YP_002218801.1 CDS Lferr_0340 NC_011206.1 320710 321348 D PFAM: toluene tolerance family protein; KEGG: eba:ebA2206 putative toluene tolerance protein; toluene tolerance family protein 320710..321348 Acidithiobacillus ferrooxidans ATCC 53993 6876291 YP_002218802.1 CDS Lferr_0341 NC_011206.1 321345 321662 D KEGG: spe:Spro_4356 anti-sigma-factor antagonist; hypothetical protein 321345..321662 Acidithiobacillus ferrooxidans ATCC 53993 6876292 YP_002218803.1 CDS Lferr_0342 NC_011206.1 321655 322575 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA1306 ATP-binding ABC transporter protein; ABC transporter-like protein 321655..322575 Acidithiobacillus ferrooxidans ATCC 53993 6876293 YP_002218804.1 CDS Lferr_0343 NC_011206.1 322578 322841 D PFAM: RNA-binding S4 domain protein; KEGG: sth:STH3229 hypothetical protein; RNA-binding S4 domain-containing protein 322578..322841 Acidithiobacillus ferrooxidans ATCC 53993 6876294 YP_002218805.1 CDS Lferr_0344 NC_011206.1 322838 323839 D KEGG: eba:ebA1139 pyridoxal phosphate biosynthesis protein; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 322838..323839 Acidithiobacillus ferrooxidans ATCC 53993 6876295 YP_002218806.1 CDS Lferr_0345 NC_011206.1 323866 324420 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: xac:XAC2564 hypothetical protein; HNH endonuclease complement(323866..324420) Acidithiobacillus ferrooxidans ATCC 53993 6876296 YP_002218807.1 CDS Lferr_0346 NC_011206.1 324483 325289 D TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: aeh:Mlg_0267 dimethyladenosine transferase; dimethyladenosine transferase 324483..325289 Acidithiobacillus ferrooxidans ATCC 53993 6876297 YP_002218808.1 CDS Lferr_0347 NC_011206.1 325286 325753 D KEGG: hau:Haur_1465 protein of unknown function DUF1790; hypothetical protein 325286..325753 Acidithiobacillus ferrooxidans ATCC 53993 6876298 YP_002218809.1 CDS Lferr_0348 NC_011206.1 325719 326552 R PFAM: Sporulation domain protein; KEGG: cvi:CV_3999 hypothetical protein; sporulation domain-containing protein complement(325719..326552) Acidithiobacillus ferrooxidans ATCC 53993 6876299 YP_002218810.1 CDS argS NC_011206.1 326560 328299 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(326560..328299) Acidithiobacillus ferrooxidans ATCC 53993 6876300 YP_002218811.1 CDS Lferr_0350 NC_011206.1 328439 330001 R PFAM: major facilitator superfamily MFS_1; KEGG: acr:Acry_2030 drug resistance transporter, EmrB/QacA subfamily; major facilitator superfamily protein complement(328439..330001) Acidithiobacillus ferrooxidans ATCC 53993 6876301 YP_002218812.1 CDS Lferr_0351 NC_011206.1 330092 330985 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB4177 putative transcriptional regulator; LysR family transcriptional regulator 330092..330985 Acidithiobacillus ferrooxidans ATCC 53993 6876302 YP_002218813.1 CDS Lferr_0352 NC_011206.1 331001 331912 R TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; PFAM: methyltransferase small; Methyltransferase type 12; KEGG: noc:Noc_2934 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; protein-(glutamine-N5) methyltransferase, 50S ribosomal protein L3-specific complement(331001..331912) Acidithiobacillus ferrooxidans ATCC 53993 6876303 YP_002218814.1 CDS Lferr_0353 NC_011206.1 331913 332680 R KEGG: mth:MTH212 exodeoxyribonuclease; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(331913..332680) Acidithiobacillus ferrooxidans ATCC 53993 6876304 YP_002218815.1 CDS Lferr_0354 NC_011206.1 332687 332971 R hypothetical protein complement(332687..332971) Acidithiobacillus ferrooxidans ATCC 53993 6876305 YP_002218816.1 CDS Lferr_0355 NC_011206.1 332992 333849 R PFAM: protein of unknown function DUF519; KEGG: mag:amb0584 protein involved in catabolism of external DNA; hypothetical protein complement(332992..333849) Acidithiobacillus ferrooxidans ATCC 53993 6876306 YP_002218817.1 CDS Lferr_0356 NC_011206.1 333941 334543 D PFAM: Glutathione S-transferase domain; KEGG: cvi:CV_3306 probable glutathione S-transferase; glutathione S-transferase domain 333941..334543 Acidithiobacillus ferrooxidans ATCC 53993 6876307 YP_002218818.1 CDS Lferr_0357 NC_011206.1 334549 335322 D TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: lpn:lpg0649 exodeoxyribonuclease III; exodeoxyribonuclease III Xth 334549..335322 Acidithiobacillus ferrooxidans ATCC 53993 6876308 YP_002218819.1 CDS Lferr_0358 NC_011206.1 335319 336332 D PFAM: ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase; ferrochelatase 335319..336332 Acidithiobacillus ferrooxidans ATCC 53993 6876309 YP_002218820.1 CDS Lferr_0359 NC_011206.1 336400 336888 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pfo:Pfl_0882 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 336400..336888 Acidithiobacillus ferrooxidans ATCC 53993 6876310 YP_002218821.1 CDS anmK NC_011206.1 336955 338118 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 336955..338118 Acidithiobacillus ferrooxidans ATCC 53993 6876311 YP_002218822.1 CDS Lferr_0361 NC_011206.1 338099 338995 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: gsu:GSU1490 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 338099..338995 Acidithiobacillus ferrooxidans ATCC 53993 6876312 YP_002218823.1 CDS Lferr_0362 NC_011206.1 338965 340674 D KEGG: aeh:Mlg_2079 type IV-A pilus assembly ATPase PilB; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; type IV-A pilus assembly ATPase PilB 338965..340674 Acidithiobacillus ferrooxidans ATCC 53993 6876313 YP_002218824.1 CDS Lferr_0363 NC_011206.1 340814 342406 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xft:PD1929 two-component system, sensor protein; signal transduction histidine kinase, nitrogen specific, NtrB 340814..342406 Acidithiobacillus ferrooxidans ATCC 53993 6876314 YP_002218825.1 CDS Lferr_0364 NC_011206.1 342399 343754 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pmy:Pmen_0965 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma-54 specific Fis family transcriptional regulator 342399..343754 Acidithiobacillus ferrooxidans ATCC 53993 6876315 YP_002218826.1 CDS Lferr_0365 NC_011206.1 343751 344551 D PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: ppw:PputW619_4538 prepilin peptidase; peptidase A24A domain-containing protein 343751..344551 Acidithiobacillus ferrooxidans ATCC 53993 6876316 YP_002218827.1 CDS Lferr_0366 NC_011206.1 344552 345166 D KEGG: reh:H16_A3258 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 344552..345166 Acidithiobacillus ferrooxidans ATCC 53993 6876317 YP_002218828.1 CDS Lferr_0367 NC_011206.1 345285 346037 D PFAM: protein of unknown function DUF1342; KEGG: pat:Patl_3340 hypothetical protein; hypothetical protein 345285..346037 Acidithiobacillus ferrooxidans ATCC 53993 6876318 YP_002218829.1 CDS Lferr_0368 NC_011206.1 346068 347087 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 346068..347087 Acidithiobacillus ferrooxidans ATCC 53993 6876319 YP_002218830.1 CDS Lferr_0369 NC_011206.1 347282 347707 D PFAM: Stringent starvation protein B; KEGG: psa:PST_1067 stringent starvation protein B; stringent starvation protein B 347282..347707 Acidithiobacillus ferrooxidans ATCC 53993 6876320 YP_002218831.1 CDS Lferr_0370 NC_011206.1 347719 348369 D PFAM: Lytic transglycosylase catalytic; KEGG: sat:SYN_02783 soluble lytic murein transglycosylase; Lytic transglycosylase 347719..348369 Acidithiobacillus ferrooxidans ATCC 53993 6876321 YP_002218832.1 CDS Lferr_0371 NC_011206.1 348351 348593 R PFAM: helix-turn-helix Fis-type; KEGG: rme:Rmet_0428 DNA-binding protein fis; Fis family transcriptional regulator complement(348351..348593) Acidithiobacillus ferrooxidans ATCC 53993 6876322 YP_002218833.1 CDS Lferr_0372 NC_011206.1 348605 349237 R TIGRFAM: MJ0042 family finger-like protein; KEGG: cvi:CV_0983 probable transmembrane protein; hypothetical protein complement(348605..349237) Acidithiobacillus ferrooxidans ATCC 53993 6876323 YP_002218834.1 CDS Lferr_0373 NC_011206.1 349240 350118 R TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: putative RNA methylase; ribosomal L11 methyltransferase; KEGG: psa:PST_3275 ribosomal protein L11 methyltransferase; 50S ribosomal protein L11 methyltransferase complement(349240..350118) Acidithiobacillus ferrooxidans ATCC 53993 6876324 YP_002218835.1 CDS Lferr_0374 NC_011206.1 350115 351461 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: mms:mma_2972 biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase complement(350115..351461) Acidithiobacillus ferrooxidans ATCC 53993 6876325 YP_002218836.1 CDS Lferr_0375 NC_011206.1 351463 351933 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: nmu:Nmul_A2753 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(351463..351933) Acidithiobacillus ferrooxidans ATCC 53993 6876326 YP_002218837.1 CDS Lferr_0376 NC_011206.1 351953 352414 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(351953..352414) Acidithiobacillus ferrooxidans ATCC 53993 6876327 YP_002218838.1 CDS Lferr_0377 NC_011206.1 352582 352959 R PFAM: helix-turn-helix HxlR type; KEGG: sse:Ssed_2189 transcriptional regulator, HxlR family; HxlR family transcriptional regulator complement(352582..352959) Acidithiobacillus ferrooxidans ATCC 53993 6876328 YP_002218839.1 CDS Lferr_0378 NC_011206.1 353296 354153 D KEGG: har:HEAR2925 Conserved hypothetical protein. putative conserved domain; hypothetical protein 353296..354153 Acidithiobacillus ferrooxidans ATCC 53993 6876329 YP_002218840.1 CDS Lferr_0379 NC_011206.1 354275 355438 R TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: hch:HCH_05877 cell division protein FtsZ; cell division protein FtsZ complement(354275..355438) Acidithiobacillus ferrooxidans ATCC 53993 6876330 YP_002218841.1 CDS Lferr_0380 NC_011206.1 355497 356765 R PFAM: cell division protein FtsA; KEGG: psa:PST_1086 cell division protein FtsA; cell division protein FtsA complement(355497..356765) Acidithiobacillus ferrooxidans ATCC 53993 6876331 YP_002218842.1 CDS Lferr_0381 NC_011206.1 356796 357638 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: xac:XAC0782 cell division protein; polypeptide-transport-associated domain-containing protein complement(356796..357638) Acidithiobacillus ferrooxidans ATCC 53993 6876332 YP_002218843.1 CDS Lferr_0382 NC_011206.1 357631 358557 R KEGG: eba:ebA1442 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase complement(357631..358557) Acidithiobacillus ferrooxidans ATCC 53993 6876333 YP_002218844.1 CDS murB NC_011206.1 358550 359437 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(358550..359437) Acidithiobacillus ferrooxidans ATCC 53993 6876334 YP_002218845.1 CDS Lferr_0384 NC_011206.1 359434 360828 R TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aeh:Mlg_2192 UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase complement(359434..360828) Acidithiobacillus ferrooxidans ATCC 53993 6876335 YP_002218846.1 CDS Lferr_0385 NC_011206.1 360821 361903 R KEGG: noc:Noc_2861 N-acetylglucosaminyltransferase, MurG; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase complement(360821..361903) Acidithiobacillus ferrooxidans ATCC 53993 6876336 YP_002218847.1 CDS Lferr_0386 NC_011206.1 361896 363068 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: nmu:Nmul_A2495 cell cycle protein; cell division protein FtsW complement(361896..363068) Acidithiobacillus ferrooxidans ATCC 53993 6876337 YP_002218848.1 CDS Lferr_0387 NC_011206.1 363065 364411 R TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aeh:Mlg_2195 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(363065..364411) Acidithiobacillus ferrooxidans ATCC 53993 6876338 YP_002218849.1 CDS mraY NC_011206.1 364413 365495 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(364413..365495) Acidithiobacillus ferrooxidans ATCC 53993 6876339 YP_002218850.1 CDS Lferr_0389 NC_011206.1 365495 366847 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aeh:Mlg_2197 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase complement(365495..366847) Acidithiobacillus ferrooxidans ATCC 53993 6876340 YP_002218851.1 CDS Lferr_0390 NC_011206.1 366844 368295 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cvi:CV_4348 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase complement(366844..368295) Acidithiobacillus ferrooxidans ATCC 53993 6876341 YP_002218852.1 CDS Lferr_0391 NC_011206.1 368282 370066 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: psa:PST_1076 penicillin-binding protein 3; peptidoglycan glycosyltransferase complement(368282..370066) Acidithiobacillus ferrooxidans ATCC 53993 6876342 YP_002218853.1 CDS Lferr_0392 NC_011206.1 370063 370326 R PFAM: cell division protein FtsL; KEGG: azo:azo0877 putative cell division protein FtsL; cell division protein FtsL complement(370063..370326) Acidithiobacillus ferrooxidans ATCC 53993 6876343 YP_002218854.1 CDS mraW NC_011206.1 370316 371281 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: tbd:Tbd_0111 methyltransferase; S-adenosyl-methyltransferase MraW complement(370316..371281) Acidithiobacillus ferrooxidans ATCC 53993 6876344 YP_002218855.1 CDS Lferr_0394 NC_011206.1 371278 371733 R TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: aeh:Mlg_2202 MraZ protein; MraZ protein complement(371278..371733) Acidithiobacillus ferrooxidans ATCC 53993 6876345 YP_002218856.1 CDS Lferr_0395 NC_011206.1 372549 372815 D hypothetical protein 372549..372815 Acidithiobacillus ferrooxidans ATCC 53993 6876347 YP_002218857.1 CDS Lferr_0396 NC_011206.1 372760 374130 R PFAM: Polynucleotide adenylyltransferase region; KEGG: rrs:RoseRS_1930 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; polynucleotide adenylyltransferase complement(372760..374130) Acidithiobacillus ferrooxidans ATCC 53993 6876348 YP_002218858.1 CDS Lferr_0397 NC_011206.1 374136 375878 R PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_2060 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(374136..375878) Acidithiobacillus ferrooxidans ATCC 53993 6876349 YP_002218859.1 CDS Lferr_0398 NC_011206.1 375880 376500 R PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: cvi:CV_4005 stringent starvation protein A; glutathione S-transferase domain complement(375880..376500) Acidithiobacillus ferrooxidans ATCC 53993 6876350 YP_002218860.1 CDS Lferr_0399 NC_011206.1 376790 377704 D PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: hha:Hhal_2084 UDP-3-0-acyl N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 376790..377704 Acidithiobacillus ferrooxidans ATCC 53993 6876351 YP_002218861.1 CDS Lferr_0400 NC_011206.1 377644 378156 R hypothetical protein complement(377644..378156) Acidithiobacillus ferrooxidans ATCC 53993 6876352 YP_002218862.1 CDS Lferr_0401 NC_011206.1 378209 380953 D TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: noc:Noc_2851 SecA protein; preprotein translocase subunit SecA 378209..380953 Acidithiobacillus ferrooxidans ATCC 53993 6876353 YP_002218863.1 CDS Lferr_0402 NC_011206.1 380963 382189 D KEGG: reh:H16_A3263 N-acetylglutamate synthase; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 380963..382189 Acidithiobacillus ferrooxidans ATCC 53993 6876354 YP_002218864.1 CDS Lferr_0403 NC_011206.1 382189 383178 D TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: tbd:Tbd_0027 hypothetical protein; mutator MutT protein 382189..383178 Acidithiobacillus ferrooxidans ATCC 53993 6876355 YP_002218865.1 CDS Lferr_0404 NC_011206.1 383179 384141 D PFAM: glycosyl transferase family 2; KEGG: afw:Anae109_4198 glycosyl transferase family 2; family 2 glycosyl transferase 383179..384141 Acidithiobacillus ferrooxidans ATCC 53993 6876356 YP_002218866.1 CDS Lferr_0405 NC_011206.1 384138 384854 D PFAM: polysaccharide deacetylase; KEGG: xfa:XF0878 hypothetical protein; polysaccharide deacetylase 384138..384854 Acidithiobacillus ferrooxidans ATCC 53993 6876357 YP_002218867.1 CDS Lferr_0406 NC_011206.1 384851 385930 D PFAM: glycosyl transferase group 1; KEGG: xfm:Xfasm12_1970 lipopolysaccharide biosynthesis protein; group 1 glycosyl transferase 384851..385930 Acidithiobacillus ferrooxidans ATCC 53993 6876358 YP_002218868.1 CDS Lferr_0407 NC_011206.1 386185 387576 D PFAM: glycosyl transferase family 39; KEGG: aae:aq_1236 hypothetical protein; glycosyl transferase 386185..387576 Acidithiobacillus ferrooxidans ATCC 53993 6876359 YP_002218869.1 CDS Lferr_0408 NC_011206.1 387654 388877 D PFAM: O-antigen polymerase; KEGG: bcm:Bcenmc03_2333 O-antigen polymerase; O-antigen polymerase 387654..388877 Acidithiobacillus ferrooxidans ATCC 53993 6876360 YP_002218870.1 CDS Lferr_0409 NC_011206.1 388926 389873 D PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_0463 glycosyl transferase family 2; family 2 glycosyl transferase 388926..389873 Acidithiobacillus ferrooxidans ATCC 53993 6876361 YP_002218871.1 CDS Lferr_0410 NC_011206.1 389898 390671 D PFAM: glycosyl transferase family 2; KEGG: cvi:CV_0228 probable beta-1,4-glucosyltransferase; family 2 glycosyl transferase 389898..390671 Acidithiobacillus ferrooxidans ATCC 53993 6876362 YP_002218872.1 CDS Lferr_0411 NC_011206.1 390671 391723 D TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: psp:PSPPH_0511 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I 390671..391723 Acidithiobacillus ferrooxidans ATCC 53993 6876363 YP_002218873.1 CDS Lferr_0412 NC_011206.1 391720 392400 D KEGG: mmr:Mmar10_0635 hypothetical protein; protein tyrosine/serine phosphatase 391720..392400 Acidithiobacillus ferrooxidans ATCC 53993 6876364 YP_002218874.1 CDS Lferr_0413 NC_011206.1 392397 393650 D PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: psa:PST_3818 3-deoxy-D-manno-octulosonic-acid transferase; three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 392397..393650 Acidithiobacillus ferrooxidans ATCC 53993 6876365 YP_002218875.1 CDS Lferr_0414 NC_011206.1 393656 394564 R PFAM: lipid A biosynthesis acyltransferase; KEGG: maq:Maqu_0793 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase complement(393656..394564) Acidithiobacillus ferrooxidans ATCC 53993 6876366 YP_002218876.1 CDS Lferr_0415 NC_011206.1 394665 395822 R PFAM: aminotransferase class I and II; KEGG: bld:BLi03326 PatB; class I/II aminotransferase complement(394665..395822) Acidithiobacillus ferrooxidans ATCC 53993 6876367 YP_002218877.1 CDS Lferr_0416 NC_011206.1 395819 397927 R PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: net:Neut_0838 protein of unknown function DUF323; hypothetical protein complement(395819..397927) Acidithiobacillus ferrooxidans ATCC 53993 6876368 YP_002218878.1 CDS Lferr_0417 NC_011206.1 397971 398486 R TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: spe:Spro_4812 RNA methyltransferase, TrmH family, group 2; TrmH family RNA methyltransferase complement(397971..398486) Acidithiobacillus ferrooxidans ATCC 53993 6876369 YP_002218879.1 CDS Lferr_0418 NC_011206.1 398497 399210 R KEGG: noc:Noc_2102 competence protein F; competence protein F complement(398497..399210) Acidithiobacillus ferrooxidans ATCC 53993 6876370 YP_002218880.1 CDS Lferr_0419 NC_011206.1 399322 400491 D KEGG: aeh:Mlg_2435 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase 399322..400491 Acidithiobacillus ferrooxidans ATCC 53993 6876371 YP_002218881.1 CDS Lferr_0420 NC_011206.1 400488 401252 D TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: tbd:Tbd_0321 BioH; bioH protein 400488..401252 Acidithiobacillus ferrooxidans ATCC 53993 6876372 YP_002218882.1 CDS Lferr_0421 NC_011206.1 401249 402127 D TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aeh:Mlg_2433 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC 401249..402127 Acidithiobacillus ferrooxidans ATCC 53993 6876373 YP_002218883.1 CDS Lferr_0422 NC_011206.1 402124 402828 D TIGRFAM: dethiobiotin synthase; KEGG: dar:Daro_2900 dethiobiotin synthase; dethiobiotin synthase 402124..402828 Acidithiobacillus ferrooxidans ATCC 53993 6876374 YP_002218884.1 CDS Lferr_0423 NC_011206.1 402942 403838 D PFAM: peptidase M48 Ste24p; KEGG: nme:NMB0822 heat shock protein HtpX; peptidase M48 Ste24p 402942..403838 Acidithiobacillus ferrooxidans ATCC 53993 6876375 YP_002218885.1 CDS Lferr_0424 NC_011206.1 403891 404610 D KEGG: tbd:Tbd_2043 leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 403891..404610 Acidithiobacillus ferrooxidans ATCC 53993 6876376 YP_002218886.1 CDS Lferr_0425 NC_011206.1 404613 405323 D PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: dar:Daro_1195 arginyl-tRNA-protein transferase; arginyltransferase 404613..405323 Acidithiobacillus ferrooxidans ATCC 53993 6876377 YP_002218887.1 CDS Lferr_0426 NC_011206.1 405320 406099 D PFAM: conserved hypothetical protein; KEGG: tte:TTE0321 predicted permease; hypothetical protein 405320..406099 Acidithiobacillus ferrooxidans ATCC 53993 6876378 YP_002218888.1 CDS Lferr_0427 NC_011206.1 406106 406711 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 406106..406711 Acidithiobacillus ferrooxidans ATCC 53993 6876379 YP_002218889.1 CDS Lferr_0428 NC_011206.1 406787 407803 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nmu:Nmul_A2686 oxidoreductase FAD/NAD(P)-binding; oxidoreductase FAD/NAD(P)-binding domain-containing protein 406787..407803 Acidithiobacillus ferrooxidans ATCC 53993 6876380 YP_002218890.1 CDS Lferr_0429 NC_011206.1 407866 408234 D KEGG: lma:LmjF23.0640 hypothetical protein, conserved Pfam: TolA OAD_gamma MAP7 Staph_haemo PROSITE: ARG_RICH GLU_RICH; hypothetical protein 407866..408234 Acidithiobacillus ferrooxidans ATCC 53993 6876381 YP_002218891.1 CDS Lferr_0430 NC_011206.1 408323 408562 R KEGG: sil:SPO0961 hypothetical protein; hypothetical protein complement(408323..408562) Acidithiobacillus ferrooxidans ATCC 53993 6876382 YP_002218892.1 CDS Lferr_0431 NC_011206.1 408627 409565 R KEGG: bur:Bcep18194_C6769 hypothetical protein; hypothetical protein complement(408627..409565) Acidithiobacillus ferrooxidans ATCC 53993 6876383 YP_002218893.1 CDS Lferr_0432 NC_011206.1 409756 410400 D PFAM: regulatory protein TetR; KEGG: noc:Noc_0199 regulatory protein, TetR family; TetR family transcriptional regulator 409756..410400 Acidithiobacillus ferrooxidans ATCC 53993 6876384 YP_002218894.1 CDS Lferr_0433 NC_011206.1 410397 411269 D KEGG: aeh:Mlg_0084 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 410397..411269 Acidithiobacillus ferrooxidans ATCC 53993 6876385 YP_002218895.1 CDS Lferr_0434 NC_011206.1 411352 412365 R PFAM: secretion protein HlyD family protein; KEGG: fph:Fphi_1408 membrane fusion protein; secretion protein HlyD family protein complement(411352..412365) Acidithiobacillus ferrooxidans ATCC 53993 6876386 YP_002218896.1 CDS Lferr_0435 NC_011206.1 412602 413168 D KEGG: noc:Noc_1000 hypothetical protein; hypothetical protein 412602..413168 Acidithiobacillus ferrooxidans ATCC 53993 6876387 YP_002218897.1 CDS Lferr_0436 NC_011206.1 413215 414165 R KEGG: noc:Noc_2101 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(413215..414165) Acidithiobacillus ferrooxidans ATCC 53993 6876388 YP_002218898.1 CDS Lferr_0437 NC_011206.1 414162 414512 R PFAM: protein of unknown function DUF167; KEGG: pfo:Pfl_5322 hypothetical protein; hypothetical protein complement(414162..414512) Acidithiobacillus ferrooxidans ATCC 53993 6876389 YP_002218899.1 CDS Lferr_0438 NC_011206.1 414537 414815 R PFAM: protein of unknown function YGGT; KEGG: abo:ABO_2667 YGGT family protein, putative; hypothetical protein complement(414537..414815) Acidithiobacillus ferrooxidans ATCC 53993 6876390 YP_002218900.1 CDS Lferr_0439 NC_011206.1 414812 415639 R KEGG: aeh:Mlg_0340 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(414812..415639) Acidithiobacillus ferrooxidans ATCC 53993 6876391 YP_002218901.1 CDS Lferr_0440 NC_011206.1 415636 416304 R PFAM: alanine racemase domain protein; KEGG: csa:Csal_3054 protein of unknown function UPF0001; alanine racemase domain-containing protein complement(415636..416304) Acidithiobacillus ferrooxidans ATCC 53993 6876392 YP_002218902.1 CDS Lferr_0441 NC_011206.1 416406 417455 D KEGG: azo:azo3468 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 416406..417455 Acidithiobacillus ferrooxidans ATCC 53993 6876393 YP_002218903.1 CDS Lferr_0442 NC_011206.1 417465 418595 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: azo:azo3469 twitching motility protein; twitching motility protein 417465..418595 Acidithiobacillus ferrooxidans ATCC 53993 6876394 YP_002218904.1 CDS Lferr_0443 NC_011206.1 418601 419749 D TIGRFAM: hopene-associated glycosyltransferase HpnB; PFAM: glycosyl transferase family 2; KEGG: rru:Rru_A0064 squalene-phytoene synthase; hopene-associated glycosyltransferase HpnB 418601..419749 Acidithiobacillus ferrooxidans ATCC 53993 6876395 YP_002218905.1 CDS Lferr_0444 NC_011206.1 419809 420936 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vok:COSY_0750 sulfide-quinone reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(419809..420936) Acidithiobacillus ferrooxidans ATCC 53993 6876396 YP_002218906.1 CDS Lferr_0445 NC_011206.1 421061 421678 R KEGG: rba:RB11231 hypothetical protein; hypothetical protein complement(421061..421678) Acidithiobacillus ferrooxidans ATCC 53993 6876397 YP_002218907.1 CDS Lferr_0446 NC_011206.1 421691 422380 R PFAM: beta-lactamase domain protein; KEGG: noc:Noc_2007 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(421691..422380) Acidithiobacillus ferrooxidans ATCC 53993 6876398 YP_002218908.1 CDS Lferr_0447 NC_011206.1 422521 423222 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: hha:Hhal_0917 putative transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator complement(422521..423222) Acidithiobacillus ferrooxidans ATCC 53993 6876399 YP_002218909.1 CDS Lferr_0448 NC_011206.1 423219 423911 R KEGG: xfa:XF0784 tRNA (guanine-N(7))-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(423219..423911) Acidithiobacillus ferrooxidans ATCC 53993 6876400 YP_002218910.1 CDS Lferr_0449 NC_011206.1 423949 424446 D KEGG: mfa:Mfla_2215 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 423949..424446 Acidithiobacillus ferrooxidans ATCC 53993 6876401 YP_002218911.1 CDS Lferr_0450 NC_011206.1 424443 425576 D KEGG: tbd:Tbd_2662 phosphoribosylaminoimidazole carboxylase ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase ATPase subunit 424443..425576 Acidithiobacillus ferrooxidans ATCC 53993 6876402 YP_002218912.1 CDS Lferr_0451 NC_011206.1 425610 426146 R KEGG: cvi:CV_3193 protein-disulfide reductase; protein-disulfide reductase complement(425610..426146) Acidithiobacillus ferrooxidans ATCC 53993 6876403 YP_002218913.1 CDS Lferr_0452 NC_011206.1 426119 426730 R KEGG: bbr:BB2320 disulfide isomerase/thiol-disulfide oxidase; hypothetical protein complement(426119..426730) Acidithiobacillus ferrooxidans ATCC 53993 6876404 YP_002218914.1 CDS Lferr_0453 NC_011206.1 426727 428397 R PFAM: glycosyl transferase family 39; KEGG: pvi:Cvib_0513 glycosyl transferase, family 39; glycosyl transferase complement(426727..428397) Acidithiobacillus ferrooxidans ATCC 53993 6876405 YP_002218915.1 CDS smpB NC_011206.1 428390 428851 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; ssrA-binding protein complement(428390..428851) Acidithiobacillus ferrooxidans ATCC 53993 6876406 YP_002218916.1 CDS Lferr_0455 NC_011206.1 428979 430148 D PFAM: phospholipase D/Transphosphatidylase; KEGG: pmy:Pmen_1132 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 428979..430148 Acidithiobacillus ferrooxidans ATCC 53993 6876407 YP_002218917.1 CDS Lferr_0456 NC_011206.1 430158 430643 D PFAM: cyclase/dehydrase; KEGG: hha:Hhal_1484 cyclase/dehydrase; cyclase/dehydrase 430158..430643 Acidithiobacillus ferrooxidans ATCC 53993 6876408 YP_002218918.1 CDS Lferr_0457 NC_011206.1 430640 430987 R PFAM: SmpA/OmlA domain protein; KEGG: noc:Noc_1195 SmpA/OmlA; SmpA/OmlA domain-containing protein complement(430640..430987) Acidithiobacillus ferrooxidans ATCC 53993 6876409 YP_002218919.1 CDS Lferr_0458 NC_011206.1 431054 431530 D PFAM: ferric-uptake regulator; KEGG: eba:ebB167 ferric uptake regulation protein (ferric uptake regulator); Fur family ferric uptake regulator 431054..431530 Acidithiobacillus ferrooxidans ATCC 53993 6876410 YP_002218920.1 CDS Lferr_0459 NC_011206.1 431527 432657 R KEGG: csa:Csal_0477 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; glutamate 5-kinase complement(431527..432657) Acidithiobacillus ferrooxidans ATCC 53993 6876411 YP_002218921.1 CDS Lferr_0460 NC_011206.1 432654 433778 R TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: maq:Maqu_0857 GTPase ObgE; GTP-binding protein Obg/CgtA complement(432654..433778) Acidithiobacillus ferrooxidans ATCC 53993 6876412 YP_002218922.1 CDS rpmA NC_011206.1 433834 434094 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(433834..434094) Acidithiobacillus ferrooxidans ATCC 53993 6876413 YP_002218923.1 CDS rplU NC_011206.1 434106 434417 R PFAM: ribosomal protein L21; KEGG: tbd:Tbd_0864 ribosomal protein L21; 50S ribosomal protein L21 complement(434106..434417) Acidithiobacillus ferrooxidans ATCC 53993 6876414 YP_002218924.1 CDS Lferr_0463 NC_011206.1 434600 436150 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: scl:sce6889 putative sulfate transporter, SulP family; sulfate transporter complement(434600..436150) Acidithiobacillus ferrooxidans ATCC 53993 6876415 YP_002218925.1 CDS Lferr_0464 NC_011206.1 436160 436789 R PFAM: carbonic anhydrase; KEGG: ppd:Ppro_2975 carbonate dehydratase; carbonate dehydratase complement(436160..436789) Acidithiobacillus ferrooxidans ATCC 53993 6876416 YP_002218926.1 CDS Lferr_0465 NC_011206.1 436957 439311 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(436957..439311) Acidithiobacillus ferrooxidans ATCC 53993 6876417 YP_002218927.1 CDS Lferr_0466 NC_011206.1 439407 440192 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pmy:Pmen_0523 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase complement(439407..440192) Acidithiobacillus ferrooxidans ATCC 53993 6876418 YP_002218928.1 CDS Lferr_0467 NC_011206.1 440240 440896 R PFAM: Glutathione S-transferase domain; KEGG: bbt:BBta_3962 putative glutathione S-transferase; glutathione S-transferase domain complement(440240..440896) Acidithiobacillus ferrooxidans ATCC 53993 6876419 YP_002218929.1 CDS Lferr_0468 NC_011206.1 440916 441521 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; KEGG: aeh:Mlg_0337 methionine biosynthesis protein MetW; methionine biosynthesis protein MetW complement(440916..441521) Acidithiobacillus ferrooxidans ATCC 53993 6876420 YP_002218930.1 CDS Lferr_0469 NC_011206.1 441518 442669 R KEGG: aeh:Mlg_0338 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase complement(441518..442669) Acidithiobacillus ferrooxidans ATCC 53993 6876421 YP_002218931.1 CDS Lferr_0470 NC_011206.1 442884 443639 D hypothetical protein 442884..443639 Acidithiobacillus ferrooxidans ATCC 53993 6876422 YP_002218932.1 CDS glyA NC_011206.1 443773 445017 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 443773..445017 Acidithiobacillus ferrooxidans ATCC 53993 6876423 YP_002218933.1 CDS nrdR NC_011206.1 445024 445515 D PFAM: ATP-cone domain protein; KEGG: yps:YPTB0933 hypothetical protein; transcriptional regulator NrdR 445024..445515 Acidithiobacillus ferrooxidans ATCC 53993 6876424 YP_002218934.1 CDS Lferr_0473 NC_011206.1 445532 446605 D KEGG: tbd:Tbd_2168 riboflavin biosynthesis protein RibD diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 445532..446605 Acidithiobacillus ferrooxidans ATCC 53993 6876425 YP_002218935.1 CDS Lferr_0474 NC_011206.1 446609 447265 D TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: pfo:Pfl_5018 riboflavin synthase subunit alpha; riboflavin synthase subunit alpha 446609..447265 Acidithiobacillus ferrooxidans ATCC 53993 6876426 YP_002218936.1 CDS Lferr_0475 NC_011206.1 447262 448395 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: vco:VC0395_A1859 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 447262..448395 Acidithiobacillus ferrooxidans ATCC 53993 6876427 YP_002218937.1 CDS ribH NC_011206.1 448392 448856 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 448392..448856 Acidithiobacillus ferrooxidans ATCC 53993 6876428 YP_002218938.1 CDS Lferr_0477 NC_011206.1 448867 449310 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: saz:Sama_1020 N utilization substance protein B; NusB antitermination factor 448867..449310 Acidithiobacillus ferrooxidans ATCC 53993 6876429 YP_002218939.1 CDS Lferr_0478 NC_011206.1 449438 449719 D KEGG: mfa:Mfla_1747 hypothetical protein; hypothetical protein 449438..449719 Acidithiobacillus ferrooxidans ATCC 53993 6876430 YP_002218940.1 CDS Lferr_0479 NC_011206.1 449878 450450 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfu:Sfum_3151 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 449878..450450 Acidithiobacillus ferrooxidans ATCC 53993 6876431 YP_002218941.1 CDS Lferr_0480 NC_011206.1 450468 450821 R KEGG: amr:AM1_0080 hypothetical protein; hypothetical protein complement(450468..450821) Acidithiobacillus ferrooxidans ATCC 53993 6876432 YP_002218942.1 CDS Lferr_0481 NC_011206.1 450876 452558 R TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: noc:Noc_2345 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase complement(450876..452558) Acidithiobacillus ferrooxidans ATCC 53993 6876433 YP_002218943.1 CDS Lferr_0482 NC_011206.1 452658 453311 R PFAM: OmpA/MotB domain protein; KEGG: tbd:Tbd_0127 outer membrane protein; ompA/MotB domain-containing protein complement(452658..453311) Acidithiobacillus ferrooxidans ATCC 53993 6876434 YP_002218944.1 CDS Lferr_0483 NC_011206.1 453886 455076 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 453886..455076 Acidithiobacillus ferrooxidans ATCC 53993 6876438 YP_002218945.1 CDS Lferr_0484 NC_011206.1 455227 455577 D TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: mca:MCA1060 preprotein translocase, SecE subunit; preprotein translocase subunit SecE 455227..455577 Acidithiobacillus ferrooxidans ATCC 53993 6876440 YP_002218946.1 CDS Lferr_0485 NC_011206.1 455578 456111 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: aeh:Mlg_0446 transcription antitermination protein NusG; NusG antitermination factor 455578..456111 Acidithiobacillus ferrooxidans ATCC 53993 6876441 YP_002218947.1 CDS rplK NC_011206.1 456165 456593 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 456165..456593 Acidithiobacillus ferrooxidans ATCC 53993 6876442 YP_002218948.1 CDS rplA NC_011206.1 456597 457289 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 456597..457289 Acidithiobacillus ferrooxidans ATCC 53993 6876443 YP_002218949.1 CDS rplJ NC_011206.1 457433 457954 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 457433..457954 Acidithiobacillus ferrooxidans ATCC 53993 6876444 YP_002218950.1 CDS rplL NC_011206.1 457984 458370 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 457984..458370 Acidithiobacillus ferrooxidans ATCC 53993 6876445 YP_002218951.1 CDS Lferr_0490 NC_011206.1 458494 462582 D TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; KEGG: aeh:Mlg_0451 DNA-directed RNA polymerase, beta subunit; DNA-directed RNA polymerase subunit beta 458494..462582 Acidithiobacillus ferrooxidans ATCC 53993 6876446 YP_002218952.1 CDS Lferr_0491 NC_011206.1 462607 466770 D KEGG: aeh:Mlg_0452 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 462607..466770 Acidithiobacillus ferrooxidans ATCC 53993 6876447 YP_002218953.1 CDS rpsL NC_011206.1 466880 467251 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 466880..467251 Acidithiobacillus ferrooxidans ATCC 53993 6876448 YP_002218954.1 CDS Lferr_0493 NC_011206.1 467278 467748 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 467278..467748 Acidithiobacillus ferrooxidans ATCC 53993 6876449 YP_002218955.1 CDS Lferr_0494 NC_011206.1 467781 469880 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 467781..469880 Acidithiobacillus ferrooxidans ATCC 53993 6876450 YP_002218956.1 CDS Lferr_0495 NC_011206.1 469901 471091 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 469901..471091 Acidithiobacillus ferrooxidans ATCC 53993 6876451 YP_002218957.1 CDS rpsJ NC_011206.1 471091 471399 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 471091..471399 Acidithiobacillus ferrooxidans ATCC 53993 6876452 YP_002218958.1 CDS rplC NC_011206.1 471417 472049 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 471417..472049 Acidithiobacillus ferrooxidans ATCC 53993 6876453 YP_002218959.1 CDS rplD NC_011206.1 472060 472677 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 472060..472677 Acidithiobacillus ferrooxidans ATCC 53993 6876454 YP_002218960.1 CDS rplW NC_011206.1 472674 472967 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 472674..472967 Acidithiobacillus ferrooxidans ATCC 53993 6876455 YP_002218961.1 CDS rplB NC_011206.1 472984 473808 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 472984..473808 Acidithiobacillus ferrooxidans ATCC 53993 6876456 YP_002218962.1 CDS rpsS NC_011206.1 473827 474102 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 473827..474102 Acidithiobacillus ferrooxidans ATCC 53993 6876457 YP_002218963.1 CDS rplV NC_011206.1 474114 474449 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 474114..474449 Acidithiobacillus ferrooxidans ATCC 53993 6876458 YP_002218964.1 CDS Lferr_0503 NC_011206.1 474457 475119 D KEGG: xcb:XC_3334 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 474457..475119 Acidithiobacillus ferrooxidans ATCC 53993 6876459 YP_002218965.1 CDS rplP NC_011206.1 475132 475548 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 475132..475548 Acidithiobacillus ferrooxidans ATCC 53993 6876460 YP_002218966.1 CDS Lferr_0505 NC_011206.1 475545 475742 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 475545..475742 Acidithiobacillus ferrooxidans ATCC 53993 6876461 YP_002218967.1 CDS Lferr_0506 NC_011206.1 475739 476014 D PFAM: ribosomal protein S17; KEGG: csa:Csal_0430 ribosomal protein S17; 30S ribosomal protein S17 475739..476014 Acidithiobacillus ferrooxidans ATCC 53993 6876462 YP_002218968.1 CDS rplN NC_011206.1 476011 476379 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 476011..476379 Acidithiobacillus ferrooxidans ATCC 53993 6876463 YP_002218969.1 CDS Lferr_0508 NC_011206.1 476389 476709 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 476389..476709 Acidithiobacillus ferrooxidans ATCC 53993 6876464 YP_002218970.1 CDS Lferr_0509 NC_011206.1 476724 477266 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 476724..477266 Acidithiobacillus ferrooxidans ATCC 53993 6876465 YP_002218971.1 CDS rpsN NC_011206.1 477280 477465 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 477280..477465 Acidithiobacillus ferrooxidans ATCC 53993 6876466 YP_002218972.1 CDS rpsH NC_011206.1 477475 477870 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 477475..477870 Acidithiobacillus ferrooxidans ATCC 53993 6876467 YP_002218973.1 CDS rplF NC_011206.1 477884 478408 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 477884..478408 Acidithiobacillus ferrooxidans ATCC 53993 6876468 YP_002218974.1 CDS rplR NC_011206.1 478427 478780 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 478427..478780 Acidithiobacillus ferrooxidans ATCC 53993 6876469 YP_002218975.1 CDS rpsE NC_011206.1 478793 479323 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 478793..479323 Acidithiobacillus ferrooxidans ATCC 53993 6876470 YP_002218976.1 CDS rpmD NC_011206.1 479316 479501 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 479316..479501 Acidithiobacillus ferrooxidans ATCC 53993 6876471 YP_002218977.1 CDS rplO NC_011206.1 479498 479935 D late assembly protein; 50S ribosomal protein L15 479498..479935 Acidithiobacillus ferrooxidans ATCC 53993 6876472 YP_002218978.1 CDS Lferr_0517 NC_011206.1 479935 481266 D TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: mfa:Mfla_0299 preprotein translocase subunit SecY; preprotein translocase subunit SecY 479935..481266 Acidithiobacillus ferrooxidans ATCC 53993 6876473 YP_002218979.1 CDS Lferr_0518 NC_011206.1 481263 481925 D PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: csc:Csac_2267 nucleoside-triphosphate--adenylate kinase; Nucleoside-triphosphate--adenylate kinase 481263..481925 Acidithiobacillus ferrooxidans ATCC 53993 6876474 YP_002218980.1 CDS Lferr_0519 NC_011206.1 481926 482144 D TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: tbd:Tbd_0426 translation initiation factor IF-1; translation initiation factor IF-1 481926..482144 Acidithiobacillus ferrooxidans ATCC 53993 6876475 YP_002218981.1 CDS rpmJ NC_011206.1 482153 482266 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 482153..482266 Acidithiobacillus ferrooxidans ATCC 53993 6876476 YP_002218982.1 CDS rpsM NC_011206.1 482330 482686 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 482330..482686 Acidithiobacillus ferrooxidans ATCC 53993 6876477 YP_002218983.1 CDS Lferr_0522 NC_011206.1 482704 483099 D PFAM: ribosomal protein S11; KEGG: maq:Maqu_0742 30S ribosomal protein S11; 30S ribosomal protein S11 482704..483099 Acidithiobacillus ferrooxidans ATCC 53993 6876478 YP_002218984.1 CDS Lferr_0523 NC_011206.1 483120 483746 D PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: nmu:Nmul_A0791 ribosomal protein S4; 30S ribosomal protein S4 483120..483746 Acidithiobacillus ferrooxidans ATCC 53993 6876479 YP_002218985.1 CDS Lferr_0524 NC_011206.1 483769 484788 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 483769..484788 Acidithiobacillus ferrooxidans ATCC 53993 6876480 YP_002218986.1 CDS rplQ NC_011206.1 484819 485193 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 484819..485193 Acidithiobacillus ferrooxidans ATCC 53993 6876481 YP_002218987.1 CDS Lferr_0526 NC_011206.1 485357 485809 R KEGG: plu:plu4867 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(485357..485809) Acidithiobacillus ferrooxidans ATCC 53993 6876482 YP_002218988.1 CDS Lferr_0527 NC_011206.1 485802 487058 R TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: pfl:PFL_6052 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(485802..487058) Acidithiobacillus ferrooxidans ATCC 53993 6876483 YP_002218989.1 CDS Lferr_0528 NC_011206.1 487091 487765 D PFAM: DNA repair protein RadC; KEGG: noc:Noc_0236 DNA repair protein RadC; DNA repair protein RadC 487091..487765 Acidithiobacillus ferrooxidans ATCC 53993 6876484 YP_002218990.1 CDS Lferr_0529 NC_011206.1 487762 488127 D PFAM: diacylglycerol kinase; KEGG: sat:SYN_02353 putative diacylglycerolkinase; diacylglycerol kinase 487762..488127 Acidithiobacillus ferrooxidans ATCC 53993 6876485 YP_002218991.1 CDS Lferr_0530 NC_011206.1 488131 488877 D PFAM: phosphoesterase PA-phosphatase related; KEGG: rfr:Rfer_4038 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 488131..488877 Acidithiobacillus ferrooxidans ATCC 53993 6876486 YP_002218992.1 CDS Lferr_0531 NC_011206.1 489047 489400 D hypothetical protein 489047..489400 Acidithiobacillus ferrooxidans ATCC 53993 6876487 YP_002218993.1 CDS Lferr_0532 NC_011206.1 489424 489780 D KEGG: gsu:GSU1167 hypothetical protein; hypothetical protein 489424..489780 Acidithiobacillus ferrooxidans ATCC 53993 6876488 YP_002218994.1 CDS Lferr_0533 NC_011206.1 489892 490269 D KEGG: dno:DNO_0022 hypothetical protein; hypothetical protein 489892..490269 Acidithiobacillus ferrooxidans ATCC 53993 6876489 YP_002218995.1 CDS Lferr_0534 NC_011206.1 490241 490825 D PFAM: phosphoribosyltransferase; KEGG: gsu:GSU1017 hypoxanthine-guanine phosphoribosyltransferase; phosphoribosyltransferase 490241..490825 Acidithiobacillus ferrooxidans ATCC 53993 6876490 YP_002218996.1 CDS Lferr_0535 NC_011206.1 490825 491637 D TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase family 2; KEGG: tbd:Tbd_0778 5'-methylthioadenosine phosphorylase; methylthioadenosine phosphorylase 490825..491637 Acidithiobacillus ferrooxidans ATCC 53993 6876491 YP_002218997.1 CDS Lferr_0536 NC_011206.1 491660 493009 R TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: aeh:Mlg_2534 NADPH-glutathione reductase; glutathione-disulfide reductase complement(491660..493009) Acidithiobacillus ferrooxidans ATCC 53993 6876492 YP_002218998.1 CDS Lferr_0537 NC_011206.1 493099 493842 R KEGG: pha:PSHAa0759 peroxiredoxin/glutaredoxin protein; TIGRFAM: glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; glutaredoxin; Redoxin domain protein; glutaredoxin-family domain-containing protein complement(493099..493842) Acidithiobacillus ferrooxidans ATCC 53993 6876493 YP_002218999.1 CDS Lferr_0538 NC_011206.1 493978 495096 R KEGG: cvi:CV_3516 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB complement(493978..495096) Acidithiobacillus ferrooxidans ATCC 53993 6876494 YP_002219000.1 CDS Lferr_0539 NC_011206.1 495093 498443 R KEGG: pau:PA14_25230 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor complement(495093..498443) Acidithiobacillus ferrooxidans ATCC 53993 6876495 YP_002219001.1 CDS Lferr_0540 NC_011206.1 498694 499407 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: noc:Noc_0854 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 498694..499407 Acidithiobacillus ferrooxidans ATCC 53993 6876496 YP_002219002.1 CDS Lferr_0541 NC_011206.1 499412 499891 D KEGG: gme:Gmet_0059 MECDP-synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 499412..499891 Acidithiobacillus ferrooxidans ATCC 53993 6876497 YP_002219003.1 CDS Lferr_0542 NC_011206.1 499884 500972 D PFAM: tRNA pseudouridine synthase D TruD; KEGG: noc:Noc_0856 tRNA pseudouridine synthase D; tRNA pseudouridine synthase D TruD 499884..500972 Acidithiobacillus ferrooxidans ATCC 53993 6876498 YP_002219004.1 CDS Lferr_0543 NC_011206.1 501048 501524 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rso:RSc3347 probable transcription regulator protein; merR family transcriptional regulator 501048..501524 Acidithiobacillus ferrooxidans ATCC 53993 6876499 YP_002219005.1 CDS Lferr_0544 NC_011206.1 501592 502170 R PFAM: Smr protein/MutS2; KEGG: pol:Bpro_0947 Smr protein/MutS2; Smr protein/MutS2 complement(501592..502170) Acidithiobacillus ferrooxidans ATCC 53993 6876500 YP_002219006.1 CDS Lferr_0545 NC_011206.1 502174 503145 R TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: azo:azo1363 thioredoxin-disulfide reductase; thioredoxin reductase complement(502174..503145) Acidithiobacillus ferrooxidans ATCC 53993 6876501 YP_002219007.1 CDS Lferr_0546 NC_011206.1 503512 505713 D PFAM: cell divisionFtsK/SpoIIIE; KEGG: tbd:Tbd_1002 cell division transmembrane protein FtsK; cell division protein FtsK 503512..505713 Acidithiobacillus ferrooxidans ATCC 53993 6876502 YP_002219008.1 CDS Lferr_0547 NC_011206.1 505685 506377 D PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dar:Daro_1296 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 505685..506377 Acidithiobacillus ferrooxidans ATCC 53993 6876503 YP_002219009.1 CDS Lferr_0548 NC_011206.1 506396 507466 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: ppd:Ppro_1410 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 506396..507466 Acidithiobacillus ferrooxidans ATCC 53993 6876504 YP_002219010.1 CDS Lferr_0549 NC_011206.1 507494 508822 D PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mca:MCA1782 recombination factor protein RarA; ATPase AAA 507494..508822 Acidithiobacillus ferrooxidans ATCC 53993 6876505 YP_002219011.1 CDS Lferr_0550 NC_011206.1 508815 510080 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 508815..510080 Acidithiobacillus ferrooxidans ATCC 53993 6876506 YP_002219012.1 CDS Lferr_0551 NC_011206.1 510084 510317 D KEGG: reh:H16_A1662 hypothetical protein; transcriptional antiterminator Rof 510084..510317 Acidithiobacillus ferrooxidans ATCC 53993 6876507 YP_002219013.1 CDS Lferr_0552 NC_011206.1 510314 511357 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pen:PSEEN1888 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 510314..511357 Acidithiobacillus ferrooxidans ATCC 53993 6876508 YP_002219014.1 CDS Lferr_0553 NC_011206.1 516923 517384 D PFAM: protein of unknown function DUF150; KEGG: csa:Csal_3076 hypothetical protein; hypothetical protein 516923..517384 Acidithiobacillus ferrooxidans ATCC 53993 6876515 YP_002219015.1 CDS Lferr_0554 NC_011206.1 517416 518897 D TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH type 1 domain protein; NusA domain protein; KEGG: nmu:Nmul_A1865 NusA antitermination factor; NusA antitermination factor 517416..518897 Acidithiobacillus ferrooxidans ATCC 53993 6876516 YP_002219016.1 CDS Lferr_0555 NC_011206.1 518956 521583 D TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein ; Miro domain protein; KEGG: mfa:Mfla_0067 translation initiation factor IF-2; translation initiation factor IF-2 518956..521583 Acidithiobacillus ferrooxidans ATCC 53993 6876517 YP_002219017.1 CDS Lferr_0556 NC_011206.1 521591 521977 D PFAM: ribosome-binding factor A; KEGG: pmy:Pmen_3607 ribosome-binding factor A; ribosome-binding factor A 521591..521977 Acidithiobacillus ferrooxidans ATCC 53993 6876518 YP_002219018.1 CDS Lferr_0557 NC_011206.1 521974 522855 D TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: psa:PST_3308 tRNA pseudouridine 55 synthase; tRNA pseudouridine synthase B 521974..522855 Acidithiobacillus ferrooxidans ATCC 53993 6876519 YP_002219019.1 CDS rpsO NC_011206.1 522894 523163 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 522894..523163 Acidithiobacillus ferrooxidans ATCC 53993 6876520 YP_002219020.1 CDS Lferr_0559 NC_011206.1 523174 525252 D KEGG: aeh:Mlg_1944 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polyribonucleotide nucleotidyltransferase 523174..525252 Acidithiobacillus ferrooxidans ATCC 53993 6876521 YP_002219021.1 CDS Lferr_0560 NC_011206.1 525295 526581 D PFAM: peptidase M16 domain protein; KEGG: sus:Acid_7201 peptidase M16 domain protein; peptidase M16 domain-containing protein 525295..526581 Acidithiobacillus ferrooxidans ATCC 53993 6876522 YP_002219022.1 CDS Lferr_0561 NC_011206.1 526584 527336 R KEGG: neu:NE0138 metallo-beta-lactamase superfamily; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase complement(526584..527336) Acidithiobacillus ferrooxidans ATCC 53993 6876523 YP_002219023.1 CDS Lferr_0562 NC_011206.1 527445 528242 D KEGG: eba:ebA6459 generic methyl-transferase; hypothetical protein 527445..528242 Acidithiobacillus ferrooxidans ATCC 53993 6876524 YP_002219024.1 CDS Lferr_0563 NC_011206.1 528224 528700 D PFAM: ribonuclease H; KEGG: hha:Hhal_1585 ribonuclease H; ribonuclease H 528224..528700 Acidithiobacillus ferrooxidans ATCC 53993 6876525 YP_002219025.1 CDS Lferr_0564 NC_011206.1 528691 529437 D KEGG: sde:Sde_2021 response regulator receiver domain protein (CheY-like); TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 528691..529437 Acidithiobacillus ferrooxidans ATCC 53993 6876526 YP_002219026.1 CDS Lferr_0565 NC_011206.1 529442 529867 R PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 roadblock/LC7; Roadblock/LC7 family protein complement(529442..529867) Acidithiobacillus ferrooxidans ATCC 53993 6876527 YP_002219027.1 CDS Lferr_0566 NC_011206.1 529944 530351 R KEGG: eba:ebB148 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(529944..530351) Acidithiobacillus ferrooxidans ATCC 53993 6876528 YP_002219028.1 CDS Lferr_0567 NC_011206.1 530362 530679 R KEGG: pca:Pcar_1338 hypothetical protein; hypothetical protein complement(530362..530679) Acidithiobacillus ferrooxidans ATCC 53993 6876529 YP_002219029.1 CDS Lferr_0568 NC_011206.1 530684 531883 R PFAM: argininosuccinate synthase; KEGG: psa:PST_1203 argininosuccinate synthase; argininosuccinate synthase complement(530684..531883) Acidithiobacillus ferrooxidans ATCC 53993 6876530 YP_002219030.1 CDS Lferr_0569 NC_011206.1 531887 532822 R TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: pst:PSPTO_4164 ornithine carbamoyltransferase; ornithine carbamoyltransferase complement(531887..532822) Acidithiobacillus ferrooxidans ATCC 53993 6876531 YP_002219031.1 CDS Lferr_0570 NC_011206.1 532819 533985 R TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: aeh:Mlg_1102 acetylornithine aminotransferase; acetylornithine and succinylornithine aminotransferase complement(532819..533985) Acidithiobacillus ferrooxidans ATCC 53993 6876532 YP_002219032.1 CDS Lferr_0571 NC_011206.1 533985 535211 R KEGG: psb:Psyr_3555 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase complement(533985..535211) Acidithiobacillus ferrooxidans ATCC 53993 6876533 YP_002219033.1 CDS Lferr_0572 NC_011206.1 535319 535540 R KEGG: tcx:Tcr_0459 hypothetical protein; hypothetical protein complement(535319..535540) Acidithiobacillus ferrooxidans ATCC 53993 6876534 YP_002219034.1 CDS Lferr_0573 NC_011206.1 535684 536169 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: rfr:Rfer_1266 Sel1-like; Sel1 domain-containing protein repeat-containing protein complement(535684..536169) Acidithiobacillus ferrooxidans ATCC 53993 6876535 YP_002219035.1 CDS Lferr_0574 NC_011206.1 536289 536534 R hypothetical protein complement(536289..536534) Acidithiobacillus ferrooxidans ATCC 53993 6876536 YP_002219036.1 CDS Lferr_0575 NC_011206.1 536570 536746 R TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: eba:ebA1543 hypothetical protein; Txe/YoeB family addiction module toxin complement(536570..536746) Acidithiobacillus ferrooxidans ATCC 53993 6876537 YP_002219037.1 CDS Lferr_0576 NC_011206.1 536810 537187 R KEGG: cak:Caul_4018 hypothetical protein; hypothetical protein complement(536810..537187) Acidithiobacillus ferrooxidans ATCC 53993 6876538 YP_002219038.1 CDS Lferr_0577 NC_011206.1 537193 537438 R KEGG: cak:Caul_4019 prevent-host-death family protein; prevent-host-death family protein complement(537193..537438) Acidithiobacillus ferrooxidans ATCC 53993 6876539 YP_002219039.1 CDS Lferr_0578 NC_011206.1 537997 538533 D KEGG: acb:A1S_3177 fimbrial protein; fimbrial protein 537997..538533 Acidithiobacillus ferrooxidans ATCC 53993 6876540 YP_002219040.1 CDS Lferr_0579 NC_011206.1 538997 539092 D hypothetical protein 538997..539092 Acidithiobacillus ferrooxidans ATCC 53993 6876541 YP_002219041.1 CDS Lferr_0580 NC_011206.1 539106 539321 D hypothetical protein 539106..539321 Acidithiobacillus ferrooxidans ATCC 53993 6876542 YP_002219042.1 CDS Lferr_0581 NC_011206.1 539428 540519 D TIGRFAM: transaldolase; PFAM: Transaldolase; KEGG: tbd:Tbd_0665 transaldolase; transaldolase 539428..540519 Acidithiobacillus ferrooxidans ATCC 53993 6876543 YP_002219043.1 CDS Lferr_0582 NC_011206.1 540553 541326 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aeh:Mlg_2277 enoyl-[acyl-carrier-protein] reductase (NADH); short-chain dehydrogenase/reductase SDR complement(540553..541326) Acidithiobacillus ferrooxidans ATCC 53993 6876544 YP_002219044.1 CDS Lferr_0583 NC_011206.1 541351 543189 R PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: pau:PA14_41090 membrane-bound lytic murein transglycosylase D precursor; Lytic transglycosylase complement(541351..543189) Acidithiobacillus ferrooxidans ATCC 53993 6876545 YP_002219045.1 CDS gltX NC_011206.1 543414 544814 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 543414..544814 Acidithiobacillus ferrooxidans ATCC 53993 6876546 YP_002219046.1 CDS Lferr_0585 NC_011206.1 544926 546863 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 544926..546863 Acidithiobacillus ferrooxidans ATCC 53993 6876547 YP_002219047.1 CDS Lferr_0586 NC_011206.1 546860 548152 D TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: tbd:Tbd_0854 isocitrate dehydrogenase (NADP); isocitrate dehydrogenase 546860..548152 Acidithiobacillus ferrooxidans ATCC 53993 6876548 YP_002219048.1 CDS Lferr_0587 NC_011206.1 548162 549325 D KEGG: mca:MCA0967 succinyl-CoA synthase, beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; succinyl-CoA synthetase subunit beta 548162..549325 Acidithiobacillus ferrooxidans ATCC 53993 6876549 YP_002219049.1 CDS Lferr_0588 NC_011206.1 549327 549671 D hypothetical protein 549327..549671 Acidithiobacillus ferrooxidans ATCC 53993 6876550 YP_002219050.1 CDS Lferr_0589 NC_011206.1 549668 550540 D TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: lpn:lpg0535 succinyl CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha 549668..550540 Acidithiobacillus ferrooxidans ATCC 53993 6876551 YP_002219051.1 CDS Lferr_0590 NC_011206.1 550540 552189 D KEGG: tbd:Tbd_0807 NAD+ synthase (glutamine-hydrolyzing); TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; NAD+ synthetase 550540..552189 Acidithiobacillus ferrooxidans ATCC 53993 6876552 YP_002219052.1 CDS Lferr_0591 NC_011206.1 552186 552524 D PFAM: nitrogen regulatory protein P-II; KEGG: hha:Hhal_2237 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 552186..552524 Acidithiobacillus ferrooxidans ATCC 53993 6876553 YP_002219053.1 CDS Lferr_0592 NC_011206.1 552558 553343 R TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: tbd:Tbd_0809 putative competence lipoprotein precursor; outer membrane assembly lipoprotein YfiO complement(552558..553343) Acidithiobacillus ferrooxidans ATCC 53993 6876554 YP_002219054.1 CDS Lferr_0593 NC_011206.1 553369 554301 D KEGG: maq:Maqu_0878 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 553369..554301 Acidithiobacillus ferrooxidans ATCC 53993 6876555 YP_002219055.1 CDS Lferr_0594 NC_011206.1 554291 555043 D PFAM: protein of unknown function DUF152; KEGG: mca:MCA0973 conserved hypothetical protein TIGR00726; hypothetical protein 554291..555043 Acidithiobacillus ferrooxidans ATCC 53993 6876556 YP_002219056.1 CDS Lferr_0595 NC_011206.1 555045 555593 D PFAM: Acireductone dioxygenase ARD; Cupin 2 conserved barrel domain protein; KEGG: mar:MAE_46350 acireductone dioxygenase; Acireductone dioxygenase ARD 555045..555593 Acidithiobacillus ferrooxidans ATCC 53993 6876557 YP_002219057.1 CDS Lferr_0596 NC_011206.1 555590 556762 D PFAM: ribulose bisphosphate carboxylase large chain; KEGG: mar:MAE_13070 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; RuBisCo-like protein 555590..556762 Acidithiobacillus ferrooxidans ATCC 53993 6876558 YP_002219058.1 CDS Lferr_0597 NC_011206.1 556747 557415 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mar:MAE_51120 haloacid dehalogenase-like hydrolase; haloacid dehalogenase domain-containing protein hydrolase 556747..557415 Acidithiobacillus ferrooxidans ATCC 53993 6876559 YP_002219059.1 CDS Lferr_0598 NC_011206.1 557405 558025 D TIGRFAM: methylthioribulose-1-phosphate dehydratase; PFAM: class II aldolase/adducin family protein; KEGG: mar:MAE_48300 aldolase/epimerase; methylthioribulose-1-phosphate dehydratase 557405..558025 Acidithiobacillus ferrooxidans ATCC 53993 6876560 YP_002219060.1 CDS Lferr_0599 NC_011206.1 558027 558548 D PFAM: amino acid-binding ACT domain protein; KEGG: ppd:Ppro_3514 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 558027..558548 Acidithiobacillus ferrooxidans ATCC 53993 6876561 YP_002219061.1 CDS Lferr_0600 NC_011206.1 558548 559051 D KEGG: gme:Gmet_3553 formylmethionine deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 558548..559051 Acidithiobacillus ferrooxidans ATCC 53993 6876562 YP_002219062.1 CDS Lferr_0601 NC_011206.1 559125 560711 R PFAM: amino acid permease-associated region; KEGG: bur:Bcep18194_C6568 putative amino acid transporter; amino acid permease-associated protein complement(559125..560711) Acidithiobacillus ferrooxidans ATCC 53993 6876563 YP_002219063.1 CDS Lferr_0602 NC_011206.1 560875 562014 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sde:Sde_2113 3-phosphoshikimate 1-carboxyvinyltransferase; dTDP-glucose 4,6-dehydratase complement(560875..562014) Acidithiobacillus ferrooxidans ATCC 53993 6876564 YP_002219064.1 CDS Lferr_0603 NC_011206.1 562034 562903 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: pat:Patl_2129 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(562034..562903) Acidithiobacillus ferrooxidans ATCC 53993 6876565 YP_002219065.1 CDS Lferr_0604 NC_011206.1 562933 563439 R hypothetical protein complement(562933..563439) Acidithiobacillus ferrooxidans ATCC 53993 6876566 YP_002219066.1 CDS Lferr_0605 NC_011206.1 563439 563771 R KEGG: cbd:COXBU7E912_2012 hypothetical protein; hypothetical protein complement(563439..563771) Acidithiobacillus ferrooxidans ATCC 53993 6876567 YP_002219067.1 CDS Lferr_0606 NC_011206.1 563836 564732 R KEGG: har:HEAR1329 glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(563836..564732) Acidithiobacillus ferrooxidans ATCC 53993 6876568 YP_002219068.1 CDS Lferr_0607 NC_011206.1 564810 565505 R PFAM: protein of unknown function DUF502; KEGG: bba:Bd2546 hypothetical protein; hypothetical protein complement(564810..565505) Acidithiobacillus ferrooxidans ATCC 53993 6876569 YP_002219069.1 CDS Lferr_0608 NC_011206.1 565578 566963 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mfa:Mfla_1055 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma-54 specific Fis family transcriptional regulator complement(565578..566963) Acidithiobacillus ferrooxidans ATCC 53993 6876570 YP_002219070.1 CDS Lferr_0609 NC_011206.1 566965 567471 R hypothetical protein complement(566965..567471) Acidithiobacillus ferrooxidans ATCC 53993 6876571 YP_002219071.1 CDS Lferr_0610 NC_011206.1 567471 568955 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pca:Pcar_0496 two component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(567471..568955) Acidithiobacillus ferrooxidans ATCC 53993 6876572 YP_002219072.1 CDS Lferr_0611 NC_011206.1 569118 570794 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: xom:XOO_1910 recombination protein N; DNA repair protein RecN complement(569118..570794) Acidithiobacillus ferrooxidans ATCC 53993 6876573 YP_002219073.1 CDS Lferr_0612 NC_011206.1 570794 571696 R PFAM: ATP-NAD/AcoX kinase; KEGG: eba:ebA4805 putative inorganic polyphosphate/ATP-NAD kinase; ATP-NAD/AcoX kinase complement(570794..571696) Acidithiobacillus ferrooxidans ATCC 53993 6876574 YP_002219074.1 CDS Lferr_0613 NC_011206.1 571761 572486 R TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: syf:Synpcc7942_1808 pantothenate kinase; Baf family transcriptional activator complement(571761..572486) Acidithiobacillus ferrooxidans ATCC 53993 6876575 YP_002219075.1 CDS Lferr_0614 NC_011206.1 572483 573424 R TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: xcb:XC_4026 biotin--protein ligase; biotin--acetyl-CoA-carboxylase ligase complement(572483..573424) Acidithiobacillus ferrooxidans ATCC 53993 6876576 YP_002219076.1 CDS proA NC_011206.1 573405 574661 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(573405..574661) Acidithiobacillus ferrooxidans ATCC 53993 6876577 YP_002219077.1 CDS Lferr_0616 NC_011206.1 574828 576012 R PFAM: major facilitator superfamily MFS_1; KEGG: nmu:Nmul_A0026 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(574828..576012) Acidithiobacillus ferrooxidans ATCC 53993 6876578 YP_002219078.1 CDS Lferr_0617 NC_011206.1 576073 577065 R KEGG: pen:PSEEN4815 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta complement(576073..577065) Acidithiobacillus ferrooxidans ATCC 53993 6876579 YP_002219079.1 CDS Lferr_0618 NC_011206.1 577067 577585 R KEGG: eca:ECA1308 LPS-assembly lipoprotein RplB; Rare lipoprotein B-like protein complement(577067..577585) Acidithiobacillus ferrooxidans ATCC 53993 6876580 YP_002219080.1 CDS Lferr_0619 NC_011206.1 577582 580047 R TIGRFAM: leucyl-tRNA synthetase; KEGG: noc:Noc_2665 leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(577582..580047) Acidithiobacillus ferrooxidans ATCC 53993 6876581 YP_002219081.1 CDS Lferr_0620 NC_011206.1 580304 580906 D stationary phase protein that binds TrpR repressor; TrpR-binding protein WrbA 580304..580906 Acidithiobacillus ferrooxidans ATCC 53993 6876582 YP_002219082.1 CDS Lferr_0621 NC_011206.1 580923 581564 D PFAM: YceI family protein; KEGG: mmw:Mmwyl1_3499 YceI family protein; hypothetical protein 580923..581564 Acidithiobacillus ferrooxidans ATCC 53993 6876583 YP_002219083.1 CDS Lferr_0622 NC_011206.1 581605 582426 D PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; KEGG: mar:MAE_59910 D-alanyl-D-alanine dipeptidase; peptidase M15D vanX D-ala-D-ala dipeptidase 581605..582426 Acidithiobacillus ferrooxidans ATCC 53993 6876584 YP_002219084.1 CDS Lferr_0623 NC_011206.1 582475 583278 D PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: rxy:Rxyl_1786 DNA-formamidopyrimidine glycosylase; DNA glycosylase/AP lyase 582475..583278 Acidithiobacillus ferrooxidans ATCC 53993 6876585 YP_002219085.1 CDS Lferr_0624 NC_011206.1 583305 583754 R SMART: Rhodanese domain protein; KEGG: net:Neut_0194 rhodanese domain protein; rhodanese domain-containing protein complement(583305..583754) Acidithiobacillus ferrooxidans ATCC 53993 6876586 YP_002219086.1 CDS Lferr_0625 NC_011206.1 583954 585129 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: lpf:lpl2012 hypothetical protein; cation diffusion facilitator family transporter 583954..585129 Acidithiobacillus ferrooxidans ATCC 53993 6876587 YP_002219087.1 CDS Lferr_0626 NC_011206.1 585284 586699 D TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: mca:MCA1677 glutamine synthetase, type I; glutamine synthetase 585284..586699 Acidithiobacillus ferrooxidans ATCC 53993 6876588 YP_002219088.1 CDS Lferr_0627 NC_011206.1 586846 587415 D KEGG: azo:azo0737 conserved hypothetical secreted protein; hypothetical protein 586846..587415 Acidithiobacillus ferrooxidans ATCC 53993 6876589 YP_002219089.1 CDS Lferr_0628 NC_011206.1 587514 588266 D KEGG: noc:Noc_0789 acid phosphatase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 587514..588266 Acidithiobacillus ferrooxidans ATCC 53993 6876590 YP_002219090.1 CDS Lferr_0629 NC_011206.1 588248 588973 D KEGG: csa:Csal_2634 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 588248..588973 Acidithiobacillus ferrooxidans ATCC 53993 6876591 YP_002219091.1 CDS Lferr_0630 NC_011206.1 588945 589898 D TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: csa:Csal_2631 sigma 28 (flagella/sporulation); RpoD family RNA polymerase sigma-70 subunit 588945..589898 Acidithiobacillus ferrooxidans ATCC 53993 6876592 YP_002219092.1 CDS Lferr_0631 NC_011206.1 589921 590295 R PFAM: protein of unknown function DUF498; KEGG: nmu:Nmul_A1553 protein of unknown function DUF598; hypothetical protein complement(589921..590295) Acidithiobacillus ferrooxidans ATCC 53993 6876593 YP_002219093.1 CDS Lferr_0632 NC_011206.1 590390 591571 D PFAM: aminotransferase class I and II; KEGG: aeh:Mlg_1823 aminotransferase; class I/II aminotransferase 590390..591571 Acidithiobacillus ferrooxidans ATCC 53993 6876594 YP_002219094.1 CDS Lferr_0633 NC_011206.1 591571 592893 D PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: tbd:Tbd_0843 homoserine dehydrogenase; homoserine dehydrogenase 591571..592893 Acidithiobacillus ferrooxidans ATCC 53993 6876595 YP_002219095.1 CDS Lferr_0634 NC_011206.1 592945 594075 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 592945..594075 Acidithiobacillus ferrooxidans ATCC 53993 6876596 YP_002219096.1 CDS Lferr_0635 NC_011206.1 594075 595040 D KEGG: tbd:Tbd_1763 hypothetical protein; hypothetical protein 594075..595040 Acidithiobacillus ferrooxidans ATCC 53993 6876597 YP_002219097.1 CDS Lferr_0636 NC_011206.1 595041 596858 D PFAM: phosphoesterase RecJ domain protein; KEGG: csa:Csal_3008 single-stranded-DNA-specific exonuclease RecJ; phosphoesterase RecJ domain-containing protein 595041..596858 Acidithiobacillus ferrooxidans ATCC 53993 6876598 YP_002219098.1 CDS Lferr_0637 NC_011206.1 597067 597297 D PFAM: SpoVT/AbrB domain protein; KEGG: eba:ebA7217 conserved hypothetical protein, related to putative virulence-associated proteins and nitrogen regulatory protein NtrP; SpoVT/AbrB domain-containing protein 597067..597297 Acidithiobacillus ferrooxidans ATCC 53993 6876599 YP_002219099.1 CDS Lferr_0638 NC_011206.1 597297 597707 D PFAM: PilT protein domain protein; KEGG: eba:ebD130 conserved hypothetical protein, similar to virulence associated protein VapC; PilT protein domain-containing protein 597297..597707 Acidithiobacillus ferrooxidans ATCC 53993 6876600 YP_002219100.1 CDS Lferr_0640 NC_011206.1 598975 600465 D TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mca:MCA0301 lysyl-tRNA synthetase; lysyl-tRNA synthetase 598975..600465 Acidithiobacillus ferrooxidans ATCC 53993 6876602 YP_002219101.1 CDS Lferr_0641 NC_011206.1 600462 601706 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: mfa:Mfla_2095 lipoprotein releasing system, transmembrane protein, LolC/E family; lipoprotein releasing system transmembrane protein LolC/E family 600462..601706 Acidithiobacillus ferrooxidans ATCC 53993 6876603 YP_002219102.1 CDS Lferr_0642 NC_011206.1 601699 602394 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_2963 probable ATP-binding component, ABC transporter; ABC transporter-like protein 601699..602394 Acidithiobacillus ferrooxidans ATCC 53993 6876604 YP_002219103.1 CDS Lferr_0643 NC_011206.1 602391 602951 R KEGG: tcx:Tcr_0956 hypothetical protein; hypothetical protein complement(602391..602951) Acidithiobacillus ferrooxidans ATCC 53993 6876605 YP_002219104.1 CDS Lferr_0644 NC_011206.1 603044 605146 D PFAM: ComEC/Rec2-related protein; KEGG: azo:azo1512 putative DNA uptake/competence protein; ComEC/Rec2-like protein 603044..605146 Acidithiobacillus ferrooxidans ATCC 53993 6876606 YP_002219105.1 CDS Lferr_0645 NC_011206.1 605239 605859 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 605239..605859 Acidithiobacillus ferrooxidans ATCC 53993 6876607 YP_002219106.1 CDS Lferr_0646 NC_011206.1 605856 606260 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rme:Rmet_0536 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 605856..606260 Acidithiobacillus ferrooxidans ATCC 53993 6876608 YP_002219107.1 CDS Lferr_0647 NC_011206.1 606264 606950 D PFAM: protein of unknown function DUF374; KEGG: mag:amb4091 hypothetical protein; hypothetical protein 606264..606950 Acidithiobacillus ferrooxidans ATCC 53993 6876609 YP_002219108.1 CDS Lferr_0648 NC_011206.1 606947 608092 D KEGG: maq:Maqu_0801 three-deoxy-D-manno-octulosonic-acid transferase domain protein; hypothetical protein 606947..608092 Acidithiobacillus ferrooxidans ATCC 53993 6876610 YP_002219109.1 CDS Lferr_0649 NC_011206.1 608089 609087 D KEGG: ppf:Pput_3814 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 608089..609087 Acidithiobacillus ferrooxidans ATCC 53993 6876611 YP_002219110.1 CDS Lferr_0650 NC_011206.1 609087 609269 D PFAM: protein of unknown function DUF343; KEGG: sfu:Sfum_3635 protein of unknown function DUF343; hypothetical protein 609087..609269 Acidithiobacillus ferrooxidans ATCC 53993 6876612 YP_002219111.1 CDS Lferr_0651 NC_011206.1 609266 610027 D KEGG: bte:BTH_I0740 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 609266..610027 Acidithiobacillus ferrooxidans ATCC 53993 6876613 YP_002219112.1 CDS Lferr_0652 NC_011206.1 610049 610570 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 610049..610570 Acidithiobacillus ferrooxidans ATCC 53993 6876614 YP_002219113.1 CDS Lferr_0653 NC_011206.1 610635 611015 D KEGG: tbd:Tbd_2109 hypothetical protein; hypothetical protein 610635..611015 Acidithiobacillus ferrooxidans ATCC 53993 6876615 YP_002219114.1 CDS Lferr_0655 NC_011206.1 612072 612299 D hypothetical protein 612072..612299 Acidithiobacillus ferrooxidans ATCC 53993 6876617 YP_002219115.1 CDS Lferr_0656 NC_011206.1 612419 613015 D KEGG: mlo:mll0380 hypothetical protein; hypothetical protein 612419..613015 Acidithiobacillus ferrooxidans ATCC 53993 6876618 YP_002219116.1 CDS Lferr_0657 NC_011206.1 612999 613613 D related to aryl-alcohol dehydrogenase; KEGG: amr:AM1_2531 aldo/keto reductase, putative; oxidoreductase-like protein 612999..613613 Acidithiobacillus ferrooxidans ATCC 53993 6876619 YP_002219117.1 CDS Lferr_0658 NC_011206.1 613610 614095 D KEGG: amr:AM1_2531 aldo/keto reductase, putative; aldo/keto reductase 613610..614095 Acidithiobacillus ferrooxidans ATCC 53993 6876620 YP_002219118.1 CDS Lferr_0659 NC_011206.1 614224 614661 D PFAM: protein of unknown function DUF1486; KEGG: mrd:Mrad2831_5286 protein of unknown function DUF1486; hypothetical protein 614224..614661 Acidithiobacillus ferrooxidans ATCC 53993 6876621 YP_002219119.1 CDS Lferr_0660 NC_011206.1 614748 615881 D KEGG: amr:AM1_0143 hypothetical protein; hypothetical protein 614748..615881 Acidithiobacillus ferrooxidans ATCC 53993 6876622 YP_002219120.1 CDS Lferr_0661 NC_011206.1 615968 616381 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: cvi:CV_1054 hypothetical protein; glutathione-dependent formaldehyde-activating protein 615968..616381 Acidithiobacillus ferrooxidans ATCC 53993 6876623 YP_002219121.1 CDS Lferr_0662 NC_011206.1 616458 616811 D KEGG: bte:BTH_II0226 hypothetical protein; hypothetical protein 616458..616811 Acidithiobacillus ferrooxidans ATCC 53993 6876624 YP_002219122.1 CDS Lferr_0663 NC_011206.1 616887 617312 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: neu:NE0446 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 616887..617312 Acidithiobacillus ferrooxidans ATCC 53993 6876625 YP_002219123.1 CDS Lferr_0664 NC_011206.1 617824 617964 D KEGG: gur:Gura_4195 hypothetical protein; hypothetical protein 617824..617964 Acidithiobacillus ferrooxidans ATCC 53993 6876626 YP_002219124.1 CDS Lferr_0665 NC_011206.1 618053 618601 D KEGG: bxe:Bxe_C0711 hypothetical protein; hypothetical protein 618053..618601 Acidithiobacillus ferrooxidans ATCC 53993 6876627 YP_002219125.1 CDS Lferr_0666 NC_011206.1 618735 619595 D KEGG: rme:Rmet_6335 integrase, catalytic region; integrase catalytic subunit 618735..619595 Acidithiobacillus ferrooxidans ATCC 53993 6876628 YP_002219126.1 CDS Lferr_0667 NC_011206.1 619670 620668 R PFAM: integrase family protein; KEGG: pol:Bpro_0713 phage integrase; integrase family protein complement(619670..620668) Acidithiobacillus ferrooxidans ATCC 53993 6876629 YP_002219127.1 CDS Lferr_0668 NC_011206.1 620661 621602 R PFAM: integrase family protein; KEGG: pol:Bpro_0712 phage integrase; integrase family protein complement(620661..621602) Acidithiobacillus ferrooxidans ATCC 53993 6876630 YP_002219128.1 CDS Lferr_0669 NC_011206.1 621599 622843 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pol:Bpro_0711 phage integrase; integrase family protein complement(621599..622843) Acidithiobacillus ferrooxidans ATCC 53993 6876631 YP_002219129.1 CDS Lferr_0670 NC_011206.1 623066 623593 D KEGG: bxe:Bxe_C0710 putative integrase; integrase 623066..623593 Acidithiobacillus ferrooxidans ATCC 53993 6876632 YP_002219130.1 CDS Lferr_0671 NC_011206.1 623597 624436 D SMART: AAA ATPase; KEGG: bxe:Bxe_C0709 putative ATPase; ATPase AAA 623597..624436 Acidithiobacillus ferrooxidans ATCC 53993 6876633 YP_002219131.1 CDS Lferr_0672 NC_011206.1 624447 624650 D hypothetical protein 624447..624650 Acidithiobacillus ferrooxidans ATCC 53993 6876634 YP_002219132.1 CDS Lferr_0673 NC_011206.1 624791 624955 D KEGG: gur:Gura_4195 hypothetical protein; hypothetical protein 624791..624955 Acidithiobacillus ferrooxidans ATCC 53993 6876635 YP_002219133.1 CDS Lferr_0674 NC_011206.1 624955 625242 D KEGG: gur:Gura_4194 hypothetical protein; hypothetical protein 624955..625242 Acidithiobacillus ferrooxidans ATCC 53993 6876636 YP_002219134.1 CDS Lferr_0676 NC_011206.1 627147 627755 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: dar:Daro_1297 hypothetical protein; uracil-DNA glycosylase 627147..627755 Acidithiobacillus ferrooxidans ATCC 53993 6876638 YP_002219135.1 CDS Lferr_0677 NC_011206.1 627822 629297 R PFAM: protein of unknown function UPF0061; KEGG: rsp:RSP_2375 hypothetical protein; hypothetical protein complement(627822..629297) Acidithiobacillus ferrooxidans ATCC 53993 6876639 YP_002219136.1 CDS Lferr_0678 NC_011206.1 629301 631559 R KEGG: mca:MCA1789 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(629301..631559) Acidithiobacillus ferrooxidans ATCC 53993 6876640 YP_002219137.1 CDS Lferr_0679 NC_011206.1 631563 631871 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: rle:RL2212 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS complement(631563..631871) Acidithiobacillus ferrooxidans ATCC 53993 6876641 YP_002219138.1 CDS Lferr_0680 NC_011206.1 632048 632824 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bpt:Bpet1707 putative peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(632048..632824) Acidithiobacillus ferrooxidans ATCC 53993 6876642 YP_002219139.1 CDS Lferr_0681 NC_011206.1 632840 633451 R TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: hha:Hhal_1208 DJ-1 family protein; DJ-1 family protein complement(632840..633451) Acidithiobacillus ferrooxidans ATCC 53993 6876643 YP_002219140.1 CDS Lferr_0682 NC_011206.1 633589 635037 R KEGG: noc:Noc_0030 peptidase S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(633589..635037) Acidithiobacillus ferrooxidans ATCC 53993 6876644 YP_002219141.1 CDS Lferr_0683 NC_011206.1 635101 636519 R PFAM: Peptidase M23; KEGG: eba:ebA1051 peptidase family M23 protein; peptidase M23 complement(635101..636519) Acidithiobacillus ferrooxidans ATCC 53993 6876645 YP_002219142.1 CDS Lferr_0684 NC_011206.1 636523 638052 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(636523..638052) Acidithiobacillus ferrooxidans ATCC 53993 6876646 YP_002219143.1 CDS Lferr_0685 NC_011206.1 638120 640606 R KEGG: mca:MCA2540 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase complement(638120..640606) Acidithiobacillus ferrooxidans ATCC 53993 6876647 YP_002219144.1 CDS Lferr_0686 NC_011206.1 640751 641200 D KEGG: azo:azo1684 hypothetical protein; hypothetical protein 640751..641200 Acidithiobacillus ferrooxidans ATCC 53993 6876648 YP_002219145.1 CDS Lferr_0687 NC_011206.1 641234 641620 D PFAM: Rhodanese domain protein; KEGG: tbd:Tbd_1981 rhodanese-like protein; rhodanese domain-containing protein 641234..641620 Acidithiobacillus ferrooxidans ATCC 53993 6876649 YP_002219146.1 CDS Lferr_0688 NC_011206.1 641633 642574 R PFAM: PfkB domain protein; KEGG: mca:MCA0047 carbohydrate kinase, PfkB family; PfkB domain-containing protein complement(641633..642574) Acidithiobacillus ferrooxidans ATCC 53993 6876650 YP_002219147.1 CDS Lferr_0689 NC_011206.1 642695 643300 D KEGG: gur:Gura_4333 OmpA/MotB domain protein; ompA/MotB domain-containing protein 642695..643300 Acidithiobacillus ferrooxidans ATCC 53993 6876651 YP_002219148.1 CDS Lferr_0690 NC_011206.1 643444 644613 D PFAM: S-adenosylmethionine synthetase; KEGG: mms:mma_3198 S-adenosylmethionine synthetase; methionine adenosyltransferase 643444..644613 Acidithiobacillus ferrooxidans ATCC 53993 6876652 YP_002219149.1 CDS Lferr_0691 NC_011206.1 644801 646207 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 644801..646207 Acidithiobacillus ferrooxidans ATCC 53993 6876653 YP_002219150.1 CDS Lferr_0692 NC_011206.1 646207 647025 D KEGG: mca:MCA0137 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 646207..647025 Acidithiobacillus ferrooxidans ATCC 53993 6876654 YP_002219151.1 CDS Lferr_0693 NC_011206.1 647130 648002 D PFAM: phosphoribulokinase/uridine kinase; KEGG: noc:Noc_2826 phosphoribulokinase; phosphoribulokinase 647130..648002 Acidithiobacillus ferrooxidans ATCC 53993 6876655 YP_002219152.1 CDS Lferr_0694 NC_011206.1 648145 648816 D PFAM: phosphoesterase PA-phosphatase related; KEGG: pna:Pnap_1372 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 648145..648816 Acidithiobacillus ferrooxidans ATCC 53993 6876656 YP_002219153.1 CDS Lferr_0695 NC_011206.1 648842 650368 R PFAM: protein of unknown function DUF814; KEGG: mxa:MXAN_6301 putative fibronectin-binding protein; hypothetical protein complement(648842..650368) Acidithiobacillus ferrooxidans ATCC 53993 6876657 YP_002219154.1 CDS Lferr_0696 NC_011206.1 650404 652077 R PFAM: ATP-sulfurylase; adenylylsulfate kinase; KEGG: cbs:COXBURSA331_A0818 sulfate adenylyltransferase/adenylylsulfate kinase; sulfate adenylyltransferase complement(650404..652077) Acidithiobacillus ferrooxidans ATCC 53993 6876658 YP_002219155.1 CDS Lferr_0697 NC_011206.1 652088 652657 R Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis; adenine phosphoribosyltransferase complement(652088..652657) Acidithiobacillus ferrooxidans ATCC 53993 6876659 YP_002219156.1 CDS groEL NC_011206.1 652918 654573 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(652918..654573) Acidithiobacillus ferrooxidans ATCC 53993 6876660 YP_002219157.1 CDS groES NC_011206.1 654620 654910 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(654620..654910) Acidithiobacillus ferrooxidans ATCC 53993 6876661 YP_002219158.1 CDS Lferr_0700 NC_011206.1 655038 655868 R KEGG: ccr:CC_1053 hypothetical protein; hypothetical protein complement(655038..655868) Acidithiobacillus ferrooxidans ATCC 53993 6876662 YP_002219159.1 CDS Lferr_0701 NC_011206.1 656182 658032 D PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: mca:MCA1041 thiol:disulfide interchange protein, DsbD family; cytochrome c biogenesis protein transmembrane region 656182..658032 Acidithiobacillus ferrooxidans ATCC 53993 6876663 YP_002219160.1 CDS Lferr_0702 NC_011206.1 658052 658264 R KEGG: nmu:Nmul_A1061 hypothetical protein; hypothetical protein complement(658052..658264) Acidithiobacillus ferrooxidans ATCC 53993 6876664 YP_002219161.1 CDS Lferr_0703 NC_011206.1 658269 659192 R TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: noc:Noc_0136 branched-chain amino acid aminotransferase; branched-chain amino acid aminotransferase complement(658269..659192) Acidithiobacillus ferrooxidans ATCC 53993 6876665 YP_002219162.1 CDS Lferr_0704 NC_011206.1 659205 662069 R PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: abo:ABO_2302 glutamate-ammonia-ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase complement(659205..662069) Acidithiobacillus ferrooxidans ATCC 53993 6876666 YP_002219163.1 CDS Lferr_0705 NC_011206.1 662318 665992 D KEGG: noc:Noc_2656 conserved hypothetical protein 2099; hypothetical protein 662318..665992 Acidithiobacillus ferrooxidans ATCC 53993 6876667 YP_002219164.1 CDS Lferr_0706 NC_011206.1 665997 666812 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mca:MCA0381 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 665997..666812 Acidithiobacillus ferrooxidans ATCC 53993 6876668 YP_002219165.1 CDS Lferr_0707 NC_011206.1 667010 668773 D PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: bra:BRADO6119 putative ABC transporter (fused ATP-binding and permease components); ABC transporter domain-containing protein 667010..668773 Acidithiobacillus ferrooxidans ATCC 53993 6876669 YP_002219166.1 CDS Lferr_0708 NC_011206.1 668795 669370 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: noc:Noc_0989 hypothetical protein; alkyl hydroperoxide reductase 668795..669370 Acidithiobacillus ferrooxidans ATCC 53993 6876670 YP_002219167.1 CDS Lferr_0709 NC_011206.1 669394 669612 R hypothetical protein complement(669394..669612) Acidithiobacillus ferrooxidans ATCC 53993 6876671 YP_002219168.1 CDS lspA NC_011206.1 669862 670320 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(669862..670320) Acidithiobacillus ferrooxidans ATCC 53993 6876672 YP_002219169.1 CDS Lferr_0711 NC_011206.1 670320 673133 R TIGRFAM: isoleucyl-tRNA synthetase; KEGG: aeh:Mlg_0852 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(670320..673133) Acidithiobacillus ferrooxidans ATCC 53993 6876673 YP_002219170.1 CDS Lferr_0712 NC_011206.1 673136 674068 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: esa:ESA_03313 hypothetical protein; riboflavin biosynthesis protein RibF complement(673136..674068) Acidithiobacillus ferrooxidans ATCC 53993 6876674 YP_002219171.1 CDS Lferr_0713 NC_011206.1 674167 674619 R KEGG: bba:Bd3838 hypothetical protein; hypothetical protein complement(674167..674619) Acidithiobacillus ferrooxidans ATCC 53993 6876675 YP_002219172.1 CDS Lferr_0714 NC_011206.1 674612 676165 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: csa:Csal_0479 integral membrane protein MviN; integral membrane protein MviN complement(674612..676165) Acidithiobacillus ferrooxidans ATCC 53993 6876676 YP_002219173.1 CDS Lferr_0715 NC_011206.1 676491 676859 R KEGG: asa:ASA_P4G177 hypothetical protein; hypothetical protein complement(676491..676859) Acidithiobacillus ferrooxidans ATCC 53993 6876677 YP_002219174.1 CDS Lferr_0716 NC_011206.1 677109 677972 D PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: kpn:KPN_03990 putative alpha helix protein; hypothetical protein 677109..677972 Acidithiobacillus ferrooxidans ATCC 53993 6876678 YP_002219175.1 CDS gmk NC_011206.1 677979 678617 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 677979..678617 Acidithiobacillus ferrooxidans ATCC 53993 6876679 YP_002219176.1 CDS Lferr_0718 NC_011206.1 678641 678916 D TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: aeh:Mlg_2443 DNA-directed RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega 678641..678916 Acidithiobacillus ferrooxidans ATCC 53993 6876680 YP_002219177.1 CDS Lferr_0719 NC_011206.1 678900 681179 D KEGG: mfa:Mfla_0050 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 678900..681179 Acidithiobacillus ferrooxidans ATCC 53993 6876681 YP_002219178.1 CDS Lferr_0720 NC_011206.1 681195 681584 D TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: lpn:lpg2008 endoribonuclease L-PSP; endoribonuclease L-PSP 681195..681584 Acidithiobacillus ferrooxidans ATCC 53993 6876682 YP_002219179.1 CDS Lferr_0721 NC_011206.1 681586 681801 D hypothetical protein 681586..681801 Acidithiobacillus ferrooxidans ATCC 53993 6876683 YP_002219180.1 CDS Lferr_0722 NC_011206.1 681803 683857 D KEGG: csa:Csal_3245 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecG 681803..683857 Acidithiobacillus ferrooxidans ATCC 53993 6876684 YP_002219181.1 CDS Lferr_0723 NC_011206.1 683950 684795 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: net:Neut_0550 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 683950..684795 Acidithiobacillus ferrooxidans ATCC 53993 6876685 YP_002219182.1 CDS Lferr_0724 NC_011206.1 684807 686147 R KEGG: csa:Csal_0796 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; protoporphyrinogen oxidase complement(684807..686147) Acidithiobacillus ferrooxidans ATCC 53993 6876686 YP_002219183.1 CDS Lferr_0725 NC_011206.1 686152 687195 R PFAM: protein of unknown function UPF0118; KEGG: pmy:Pmen_2994 protein of unknown function UPF0118; hypothetical protein complement(686152..687195) Acidithiobacillus ferrooxidans ATCC 53993 6876687 YP_002219184.1 CDS Lferr_0726 NC_011206.1 687450 688298 D PFAM: protein of unknown function DUF52; KEGG: rfr:Rfer_0398 protein of unknown function DUF52; hypothetical protein 687450..688298 Acidithiobacillus ferrooxidans ATCC 53993 6876688 YP_002219185.1 CDS Lferr_0727 NC_011206.1 688279 688887 D PFAM: AMMECR1 domain protein; KEGG: tbd:Tbd_1586 hypothetical protein; AMMECR1 domain-containing protein 688279..688887 Acidithiobacillus ferrooxidans ATCC 53993 6876689 YP_002219186.1 CDS Lferr_0728 NC_011206.1 688880 689965 D PFAM: Radical SAM domain protein; KEGG: rfr:Rfer_0396 radical SAM; radical SAM protein 688880..689965 Acidithiobacillus ferrooxidans ATCC 53993 6876690 YP_002219187.1 CDS Lferr_0729 NC_011206.1 689973 691307 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: maq:Maqu_0802 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein complement(689973..691307) Acidithiobacillus ferrooxidans ATCC 53993 6876691 YP_002219188.1 CDS Lferr_0730 NC_011206.1 691419 692861 D TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: noc:Noc_0255 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I 691419..692861 Acidithiobacillus ferrooxidans ATCC 53993 6876692 YP_002219189.1 CDS Lferr_0731 NC_011206.1 692929 693915 D PFAM: conserved hypothetical protein; KEGG: sat:SYN_00361 hypothetical membrane protein; hypothetical protein 692929..693915 Acidithiobacillus ferrooxidans ATCC 53993 6876693 YP_002219190.1 CDS Lferr_0732 NC_011206.1 694593 694775 D hypothetical protein 694593..694775 Acidithiobacillus ferrooxidans ATCC 53993 6876695 YP_002219191.1 CDS Lferr_0733 NC_011206.1 694826 695023 R KEGG: noc:Noc_1857 hypothetical protein; hypothetical protein complement(694826..695023) Acidithiobacillus ferrooxidans ATCC 53993 6876696 YP_002219192.1 CDS Lferr_0734 NC_011206.1 695017 695247 R KEGG: tth:TTC1364 hypothetical protein; hypothetical protein complement(695017..695247) Acidithiobacillus ferrooxidans ATCC 53993 6876697 YP_002219193.1 CDS Lferr_0736 NC_011206.1 696486 696755 R KEGG: bcm:Bcenmc03_4112 sodium/calcium exchanger membrane region; hypothetical protein complement(696486..696755) Acidithiobacillus ferrooxidans ATCC 53993 6876700 YP_002219194.1 CDS Lferr_0737 NC_011206.1 696856 697170 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(696856..697170) Acidithiobacillus ferrooxidans ATCC 53993 6876701 YP_002219195.1 CDS Lferr_0738 NC_011206.1 697292 698611 R KEGG: sma:SAV256 transposase; hypothetical protein complement(697292..698611) Acidithiobacillus ferrooxidans ATCC 53993 6876702 YP_002219196.1 CDS Lferr_0739 NC_011206.1 698685 699635 R PFAM: sodium/calcium exchanger membrane region; KEGG: bcm:Bcenmc03_4112 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane protein complement(698685..699635) Acidithiobacillus ferrooxidans ATCC 53993 6876703 YP_002219197.1 CDS Lferr_0740 NC_011206.1 699661 700284 D KEGG: afw:Anae109_4330 beta-lactamase domain protein; hypothetical protein 699661..700284 Acidithiobacillus ferrooxidans ATCC 53993 6876704 YP_002219198.1 CDS Lferr_0741 NC_011206.1 700386 702239 D PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pca:Pcar_0328 cold-shock inducible ATP-independent RNA helicase; DEAD/DEAH box helicase 700386..702239 Acidithiobacillus ferrooxidans ATCC 53993 6876705 YP_002219199.1 CDS Lferr_0742 NC_011206.1 702337 702540 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: azo:azo2603 cold shock-like protein; cold-shock DNA-binding domain-containing protein complement(702337..702540) Acidithiobacillus ferrooxidans ATCC 53993 6876706 YP_002219200.1 CDS Lferr_0743 NC_011206.1 702644 704806 R KEGG: pap:PSPA7_5787 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' complement(702644..704806) Acidithiobacillus ferrooxidans ATCC 53993 6876707 YP_002219201.1 CDS Lferr_0744 NC_011206.1 705074 705976 R TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: reh:H16_A3107 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyltransferase complement(705074..705976) Acidithiobacillus ferrooxidans ATCC 53993 6876708 YP_002219202.1 CDS Lferr_0745 NC_011206.1 705976 706560 R PFAM: Chorismate lyase; KEGG: azo:azo0478 putative chorismate:pyruvate lyase; chorismate lyase complement(705976..706560) Acidithiobacillus ferrooxidans ATCC 53993 6876709 YP_002219203.1 CDS Lferr_0746 NC_011206.1 706579 707181 R KEGG: bam:Bamb_5159 methyltransferase type 11; type 11 methyltransferase complement(706579..707181) Acidithiobacillus ferrooxidans ATCC 53993 6876710 YP_002219204.1 CDS Lferr_0747 NC_011206.1 707341 707724 D hypothetical protein 707341..707724 Acidithiobacillus ferrooxidans ATCC 53993 6876711 YP_002219205.1 CDS Lferr_0748 NC_011206.1 707808 709163 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 707808..709163 Acidithiobacillus ferrooxidans ATCC 53993 6876712 YP_002219206.1 CDS Lferr_0749 NC_011206.1 709168 710151 D PFAM: PhoH family protein; KEGG: csa:Csal_2335 PhoH-like protein; PhoH family protein 709168..710151 Acidithiobacillus ferrooxidans ATCC 53993 6876713 YP_002219207.1 CDS Lferr_0750 NC_011206.1 710148 710645 D PFAM: protein of unknown function UPF0054; KEGG: ppf:Pput_4664 hypothetical protein; hypothetical protein 710148..710645 Acidithiobacillus ferrooxidans ATCC 53993 6876714 YP_002219208.1 CDS Lferr_0751 NC_011206.1 710638 711513 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: aeh:Mlg_0397 CBS domain containing protein; hypothetical protein 710638..711513 Acidithiobacillus ferrooxidans ATCC 53993 6876715 YP_002219209.1 CDS Lferr_0752 NC_011206.1 711510 713030 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rme:Rmet_0449 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 711510..713030 Acidithiobacillus ferrooxidans ATCC 53993 6876716 YP_002219210.1 CDS Lferr_0753 NC_011206.1 712999 714345 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: nmu:Nmul_A2415 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(712999..714345) Acidithiobacillus ferrooxidans ATCC 53993 6876717 YP_002219211.1 CDS Lferr_0754 NC_011206.1 714591 715523 D PFAM: periplasmic solute binding protein; KEGG: acr:Acry_2369 periplasmic solute binding protein; periplasmic solute-binding protein 714591..715523 Acidithiobacillus ferrooxidans ATCC 53993 6876718 YP_002219212.1 CDS Lferr_0755 NC_011206.1 715537 716361 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_2368 ABC transporter related; ABC transporter-like protein 715537..716361 Acidithiobacillus ferrooxidans ATCC 53993 6876719 YP_002219213.1 CDS Lferr_0756 NC_011206.1 716366 717271 D PFAM: ABC-3 protein; KEGG: acr:Acry_2367 ABC-3 protein; ABC-3 protein 716366..717271 Acidithiobacillus ferrooxidans ATCC 53993 6876720 YP_002219214.1 CDS Lferr_0757 NC_011206.1 717275 718084 D PFAM: ABC-3 protein; KEGG: acr:Acry_2366 ABC-3 protein; ABC-3 protein 717275..718084 Acidithiobacillus ferrooxidans ATCC 53993 6876721 YP_002219215.1 CDS Lferr_0758 NC_011206.1 718121 719329 R KEGG: acr:Acry_0201 hypothetical protein; hypothetical protein complement(718121..719329) Acidithiobacillus ferrooxidans ATCC 53993 6876722 YP_002219216.1 CDS Lferr_0759 NC_011206.1 719322 720152 R KEGG: acr:Acry_0202 hypothetical protein; hypothetical protein complement(719322..720152) Acidithiobacillus ferrooxidans ATCC 53993 6876723 YP_002219217.1 CDS Lferr_0760 NC_011206.1 720433 721446 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase complement(720433..721446) Acidithiobacillus ferrooxidans ATCC 53993 6876724 YP_002219218.1 CDS Lferr_0761 NC_011206.1 721443 721688 R hypothetical protein complement(721443..721688) Acidithiobacillus ferrooxidans ATCC 53993 6876725 YP_002219219.1 CDS Lferr_0762 NC_011206.1 721760 723007 R KEGG: acr:Acry_0201 hypothetical protein; hypothetical protein complement(721760..723007) Acidithiobacillus ferrooxidans ATCC 53993 6876726 YP_002219220.1 CDS Lferr_0763 NC_011206.1 723000 723842 R KEGG: acr:Acry_0202 hypothetical protein; hypothetical protein complement(723000..723842) Acidithiobacillus ferrooxidans ATCC 53993 6876727 YP_002219221.1 CDS Lferr_0764 NC_011206.1 724211 724549 D hypothetical protein 724211..724549 Acidithiobacillus ferrooxidans ATCC 53993 6876728 YP_002219222.1 CDS Lferr_0765 NC_011206.1 724549 725967 D KEGG: acr:Acry_0204 response regulator receiver protein; glycosyl transferase-like protein 724549..725967 Acidithiobacillus ferrooxidans ATCC 53993 6876729 YP_002219223.1 CDS Lferr_0766 NC_011206.1 725964 727226 D PFAM: glycosyl transferase group 1; KEGG: acr:Acry_0205 glycosyl transferase, group 1; group 1 glycosyl transferase 725964..727226 Acidithiobacillus ferrooxidans ATCC 53993 6876730 YP_002219224.1 CDS Lferr_0767 NC_011206.1 727223 728467 D PFAM: glycosyl transferase group 1; KEGG: acr:Acry_0206 glycosyl transferase, group 1; group 1 glycosyl transferase 727223..728467 Acidithiobacillus ferrooxidans ATCC 53993 6876731 YP_002219225.1 CDS Lferr_0768 NC_011206.1 728464 730296 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_0207 ABC transporter related; ABC transporter-like protein 728464..730296 Acidithiobacillus ferrooxidans ATCC 53993 6876732 YP_002219226.1 CDS Lferr_0769 NC_011206.1 730293 731597 D KEGG: cau:Caur_2850 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 730293..731597 Acidithiobacillus ferrooxidans ATCC 53993 6876733 YP_002219227.1 CDS Lferr_0770 NC_011206.1 731638 732480 D KEGG: acr:Acry_0208 hypothetical protein; hypothetical protein 731638..732480 Acidithiobacillus ferrooxidans ATCC 53993 6876734 YP_002219228.1 CDS Lferr_0771 NC_011206.1 732492 733160 D PFAM: Phosphoglycerate mutase; KEGG: acr:Acry_0209 phosphoglycerate mutase; phosphoglycerate mutase 732492..733160 Acidithiobacillus ferrooxidans ATCC 53993 6876735 YP_002219229.1 CDS Lferr_0772 NC_011206.1 733137 733922 R KEGG: acr:Acry_0203 hypothetical protein; hypothetical protein complement(733137..733922) Acidithiobacillus ferrooxidans ATCC 53993 6876736 YP_002219230.1 CDS Lferr_0773 NC_011206.1 734088 734900 R SMART: helix-turn-helix domain protein; KEGG: bvi:Bcep1808_2512 putative transcriptional regulator, XRE family; XRE family transcriptional regulator complement(734088..734900) Acidithiobacillus ferrooxidans ATCC 53993 6876737 YP_002219231.1 CDS Lferr_0774 NC_011206.1 735032 735796 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bte:BTH_I0870 methlytransferase, UbiE/COQ5 family; type 11 methyltransferase 735032..735796 Acidithiobacillus ferrooxidans ATCC 53993 6876738 YP_002219232.1 CDS Lferr_0775 NC_011206.1 735846 737258 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 735846..737258 Acidithiobacillus ferrooxidans ATCC 53993 6876739 YP_002219233.1 CDS leuD NC_011206.1 737406 738029 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 737406..738029 Acidithiobacillus ferrooxidans ATCC 53993 6876740 YP_002219234.1 CDS Lferr_0777 NC_011206.1 738050 738364 D hypothetical protein 738050..738364 Acidithiobacillus ferrooxidans ATCC 53993 6876741 YP_002219235.1 CDS Lferr_0778 NC_011206.1 738381 739037 R KEGG: rca:Rcas_1067 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase complement(738381..739037) Acidithiobacillus ferrooxidans ATCC 53993 6876742 YP_002219236.1 CDS Lferr_0779 NC_011206.1 739069 739728 R KEGG: aeh:Mlg_0086 ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase complement(739069..739728) Acidithiobacillus ferrooxidans ATCC 53993 6876743 YP_002219237.1 CDS Lferr_0780 NC_011206.1 739718 740470 R PFAM: ThiJ/PfpI domain protein; KEGG: nfa:nfa15880 hypothetical protein; ThiJ/PfpI domain-containing protein complement(739718..740470) Acidithiobacillus ferrooxidans ATCC 53993 6876744 YP_002219238.1 CDS Lferr_0781 NC_011206.1 741236 742201 D PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: acr:Acry_1096 cytochrome c oxidase, subunit II; COX aromatic rich domain-containing protein 741236..742201 Acidithiobacillus ferrooxidans ATCC 53993 6876745 YP_002219239.1 CDS Lferr_0782 NC_011206.1 742221 744371 D PFAM: cytochrome c oxidase subunit I; KEGG: acr:Acry_1095 cytochrome-c oxidase; cytochrome-c oxidase 742221..744371 Acidithiobacillus ferrooxidans ATCC 53993 6876746 YP_002219240.1 CDS Lferr_0783 NC_011206.1 744438 745073 D KEGG: acr:Acry_1094 heme/copper-type cytochrome/quinol oxidase subunit 3-like protein; heme/copper-type cytochrome/quinol oxidase subunit 3-like protein 744438..745073 Acidithiobacillus ferrooxidans ATCC 53993 6876747 YP_002219241.1 CDS Lferr_0784 NC_011206.1 745070 745426 D KEGG: acr:Acry_1093 hypothetical protein; hypothetical protein 745070..745426 Acidithiobacillus ferrooxidans ATCC 53993 6876748 YP_002219242.1 CDS Lferr_0785 NC_011206.1 745455 746399 D TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: hch:HCH_00054 protoheme IX farnesyltransferase; protoheme IX farnesyltransferase 745455..746399 Acidithiobacillus ferrooxidans ATCC 53993 6876749 YP_002219243.1 CDS Lferr_0786 NC_011206.1 746419 747621 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: psp:PSPPH_4562 major facilitator family transporter; major facilitator superfamily protein 746419..747621 Acidithiobacillus ferrooxidans ATCC 53993 6876750 YP_002219244.1 CDS Lferr_0787 NC_011206.1 747615 748448 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(747615..748448) Acidithiobacillus ferrooxidans ATCC 53993 6876751 YP_002219245.1 CDS Lferr_0788 NC_011206.1 748460 748936 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: eba:ebA4816 transcription elongation factor; transcription elongation factor GreA complement(748460..748936) Acidithiobacillus ferrooxidans ATCC 53993 6876752 YP_002219246.1 CDS Lferr_0789 NC_011206.1 748933 752172 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: mca:MCA1852 carbamoyl-phosphate synthase, large subunit; carbamoyl-phosphate synthase large subunit complement(748933..752172) Acidithiobacillus ferrooxidans ATCC 53993 6876753 YP_002219247.1 CDS Lferr_0790 NC_011206.1 752165 753307 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: dar:Daro_0938 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit complement(752165..753307) Acidithiobacillus ferrooxidans ATCC 53993 6876754 YP_002219248.1 CDS Lferr_0791 NC_011206.1 753542 754228 D KEGG: bra:BRADO1978 hypothetical protein; hypothetical protein 753542..754228 Acidithiobacillus ferrooxidans ATCC 53993 6876755 YP_002219249.1 CDS Lferr_0792 NC_011206.1 754332 754532 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: xfa:XF0782 sulfur carrier protein ThiS; thiamine biosynthesis protein ThiS 754332..754532 Acidithiobacillus ferrooxidans ATCC 53993 6876756 YP_002219250.1 CDS Lferr_0793 NC_011206.1 754577 755359 D PFAM: thiazole biosynthesis family protein; KEGG: mca:MCA1077 bifunctional sulfur carrier protein/thiazole synthase protein; thiazole biosynthesis family protein 754577..755359 Acidithiobacillus ferrooxidans ATCC 53993 6876757 YP_002219251.1 CDS Lferr_0794 NC_011206.1 755340 755930 D hypothetical protein 755340..755930 Acidithiobacillus ferrooxidans ATCC 53993 6876758 YP_002219252.1 CDS Lferr_0795 NC_011206.1 755942 757309 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: azo:azo0868 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 755942..757309 Acidithiobacillus ferrooxidans ATCC 53993 6876759 YP_002219253.1 CDS Lferr_0796 NC_011206.1 757341 757958 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: cvi:CV_3337 aromatic acid decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 757341..757958 Acidithiobacillus ferrooxidans ATCC 53993 6876760 YP_002219254.1 CDS Lferr_0797 NC_011206.1 757891 758742 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0107 ATPase component uncharacterized ABC-type transport system; ABC transporter-like protein complement(757891..758742) Acidithiobacillus ferrooxidans ATCC 53993 6876761 YP_002219255.1 CDS Lferr_0798 NC_011206.1 758742 759878 R PFAM: protein of unknown function DUF140; KEGG: mms:mma_3241 ABC transport system permease protein; hypothetical protein complement(758742..759878) Acidithiobacillus ferrooxidans ATCC 53993 6876762 YP_002219256.1 CDS Lferr_0799 NC_011206.1 759923 760426 D SMART: Water Stress and Hypersensitive response domain protein; KEGG: noc:Noc_1708 hypothetical protein; Water Stress and Hypersensitive response domain-containing protein 759923..760426 Acidithiobacillus ferrooxidans ATCC 53993 6876763 YP_002219257.1 CDS Lferr_0800 NC_011206.1 760371 761147 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: aeh:Mlg_2849 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(760371..761147) Acidithiobacillus ferrooxidans ATCC 53993 6876764 YP_002219258.1 CDS Lferr_0801 NC_011206.1 761140 761490 R hypothetical protein complement(761140..761490) Acidithiobacillus ferrooxidans ATCC 53993 6876765 YP_002219259.1 CDS Lferr_0802 NC_011206.1 761487 762242 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pst:PSPTO_1111 molybdopterin biosynthesis protein MoeB; UBA/THIF-type NAD/FAD-binding protein complement(761487..762242) Acidithiobacillus ferrooxidans ATCC 53993 6876766 YP_002219260.1 CDS Lferr_0803 NC_011206.1 762379 763521 R KEGG: eba:ebA6804 hypothetical protein; hypothetical protein complement(762379..763521) Acidithiobacillus ferrooxidans ATCC 53993 6876767 YP_002219261.1 CDS Lferr_0804 NC_011206.1 763514 766021 R PFAM: protein of unknown function DUF214; KEGG: reh:H16_B1609 ABC-type transporter, duplicated permease domains; hypothetical protein complement(763514..766021) Acidithiobacillus ferrooxidans ATCC 53993 6876768 YP_002219262.1 CDS Lferr_0805 NC_011206.1 766018 766734 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_B1610 ABC-type transporter, ATPase component; ABC transporter-like protein complement(766018..766734) Acidithiobacillus ferrooxidans ATCC 53993 6876769 YP_002219263.1 CDS Lferr_0806 NC_011206.1 767142 767468 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: hha:Hhal_2056 thioredoxin; thioredoxin 767142..767468 Acidithiobacillus ferrooxidans ATCC 53993 6876771 YP_002219264.1 CDS Lferr_0807 NC_011206.1 767585 768841 D KEGG: noc:Noc_2592 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; Ribonuclease B OB region domain; SMART: AAA ATPase; Cold shock protein; transcription termination factor Rho 767585..768841 Acidithiobacillus ferrooxidans ATCC 53993 6876772 YP_002219265.1 CDS Lferr_0808 NC_011206.1 768916 769122 D PFAM: ribosomal protein L31; KEGG: fta:FTA_1378 ribosomal protein L31; 50S ribosomal protein L31 768916..769122 Acidithiobacillus ferrooxidans ATCC 53993 6876773 YP_002219266.1 CDS Lferr_0809 NC_011206.1 769129 770367 D PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: tbd:Tbd_1181 malate dehydrogenase (oxaloacetate-decarboxylating); malate dehydrogenase 769129..770367 Acidithiobacillus ferrooxidans ATCC 53993 6876774 YP_002219267.1 CDS Lferr_0810 NC_011206.1 770374 771429 D PFAM: protein of unknown function UPF0118; KEGG: mca:MCA2709 hypothetical protein; hypothetical protein 770374..771429 Acidithiobacillus ferrooxidans ATCC 53993 6876775 YP_002219268.1 CDS Lferr_0811 NC_011206.1 771700 773376 D KEGG: afw:Anae109_4269 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 771700..773376 Acidithiobacillus ferrooxidans ATCC 53993 6876776 YP_002219269.1 CDS Lferr_0812 NC_011206.1 773383 774339 D PFAM: protein of unknown function DUF88; KEGG: aeh:Mlg_0311 protein of unknown function DUF88; hypothetical protein 773383..774339 Acidithiobacillus ferrooxidans ATCC 53993 6876777 YP_002219270.1 CDS Lferr_0813 NC_011206.1 774354 775661 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(774354..775661) Acidithiobacillus ferrooxidans ATCC 53993 6876778 YP_002219271.1 CDS Lferr_0814 NC_011206.1 775677 775988 R PFAM: BolA family protein; KEGG: bur:Bcep18194_A5212 BolA-like protein; BolA family protein complement(775677..775988) Acidithiobacillus ferrooxidans ATCC 53993 6876779 YP_002219272.1 CDS Lferr_0815 NC_011206.1 775985 776287 R PFAM: YCII-related; KEGG: hha:Hhal_0586 YCII-related; hypothetical protein complement(775985..776287) Acidithiobacillus ferrooxidans ATCC 53993 6876780 YP_002219273.1 CDS Lferr_0816 NC_011206.1 776370 776927 R TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: reh:H16_A1516 intracellular septation protein A; intracellular septation protein A complement(776370..776927) Acidithiobacillus ferrooxidans ATCC 53993 6876781 YP_002219274.1 CDS Lferr_0817 NC_011206.1 776990 777853 D PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: net:Neut_0654 protein of unknown function DUF815; hypothetical protein 776990..777853 Acidithiobacillus ferrooxidans ATCC 53993 6876782 YP_002219275.1 CDS Lferr_0818 NC_011206.1 777938 778741 R PFAM: inositol monophosphatase; KEGG: noc:Noc_0719 inositol-1(or 4)-monophosphatase; inositol-phosphate phosphatase complement(777938..778741) Acidithiobacillus ferrooxidans ATCC 53993 6876783 YP_002219276.1 CDS Lferr_0819 NC_011206.1 778823 779593 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pfl:PFL_4968 RNA methyltransferase, TrmH family, group 1; TrmH family RNA methyltransferase 778823..779593 Acidithiobacillus ferrooxidans ATCC 53993 6876784 YP_002219277.1 CDS Lferr_0820 NC_011206.1 779593 780387 D KEGG: son:SO_2262 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine O-acetyltransferase 779593..780387 Acidithiobacillus ferrooxidans ATCC 53993 6876785 YP_002219278.1 CDS Lferr_0821 NC_011206.1 780433 780921 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pna:Pnap_2291 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 780433..780921 Acidithiobacillus ferrooxidans ATCC 53993 6876786 YP_002219279.1 CDS Lferr_0822 NC_011206.1 780941 782206 D TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bte:BTH_I1875 cysteine desulfurase IscS; cysteine desulfurase IscS 780941..782206 Acidithiobacillus ferrooxidans ATCC 53993 6876787 YP_002219280.1 CDS Lferr_0823 NC_011206.1 782231 782662 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: ngo:NGO0633 scaffold protein; FeS cluster assembly scaffold IscU 782231..782662 Acidithiobacillus ferrooxidans ATCC 53993 6876788 YP_002219281.1 CDS Lferr_0824 NC_011206.1 782672 782995 D TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azo:azo2014 putative regulatory protein; iron-sulfur cluster assembly protein IscA 782672..782995 Acidithiobacillus ferrooxidans ATCC 53993 6876789 YP_002219282.1 CDS Lferr_0825 NC_011206.1 782995 783612 D TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSC20 oligomerisation; KEGG: mgm:Mmc1_3059 co-chaperone Hsc20; co-chaperone Hsc20 782995..783612 Acidithiobacillus ferrooxidans ATCC 53993 6876790 YP_002219283.1 CDS hscA NC_011206.1 783646 785511 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 783646..785511 Acidithiobacillus ferrooxidans ATCC 53993 6876791 YP_002219284.1 CDS Lferr_0827 NC_011206.1 785512 785850 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: asa:ASA_2606 ferredoxin; ferredoxin, 2Fe-2S type, ISC system 785512..785850 Acidithiobacillus ferrooxidans ATCC 53993 6876792 YP_002219285.1 CDS Lferr_0828 NC_011206.1 785850 786044 D TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: mag:amb3022 hypothetical protein; FeS assembly protein IscX 785850..786044 Acidithiobacillus ferrooxidans ATCC 53993 6876793 YP_002219286.1 CDS Lferr_0829 NC_011206.1 786058 787116 D PFAM: ExsB family protein; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: gme:Gmet_0873 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 786058..787116 Acidithiobacillus ferrooxidans ATCC 53993 6876794 YP_002219287.1 CDS Lferr_0830 NC_011206.1 787135 788034 R PFAM: Patatin; KEGG: hha:Hhal_0457 patatin; patatin complement(787135..788034) Acidithiobacillus ferrooxidans ATCC 53993 6876795 YP_002219288.1 CDS Lferr_0831 NC_011206.1 788237 788344 D KEGG: rfr:Rfer_0033 hypothetical protein; hypothetical protein 788237..788344 Acidithiobacillus ferrooxidans ATCC 53993 6876796 YP_002219289.1 CDS Lferr_0832 NC_011206.1 788357 790711 D PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: dol:Dole_0824 EcoEI R domain protein; EcoEI R domain-containing protein 788357..790711 Acidithiobacillus ferrooxidans ATCC 53993 6876797 YP_002219290.1 CDS Lferr_0833 NC_011206.1 790708 792177 D PFAM: N-6 DNA methylase; KEGG: dol:Dole_0823 N-6 DNA methylase; N-6 DNA methylase 790708..792177 Acidithiobacillus ferrooxidans ATCC 53993 6876798 YP_002219291.1 CDS Lferr_0834 NC_011206.1 792183 793157 D TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: gur:Gura_3598 death-on-curing family protein; death-on-curing family protein 792183..793157 Acidithiobacillus ferrooxidans ATCC 53993 6876799 YP_002219292.1 CDS Lferr_0835 NC_011206.1 793157 794848 D PFAM: restriction modification system DNA specificity domain; KEGG: swd:Swoo_0501 restriction modification system DNA specificity domain; restriction modification system DNA specificity protein 793157..794848 Acidithiobacillus ferrooxidans ATCC 53993 6876800 YP_002219293.1 CDS Lferr_0836 NC_011206.1 794859 796700 D KEGG: bba:Bd3697 hypothetical protein; hypothetical protein 794859..796700 Acidithiobacillus ferrooxidans ATCC 53993 6876801 YP_002219294.1 CDS Lferr_0837 NC_011206.1 797016 797159 R hypothetical protein complement(797016..797159) Acidithiobacillus ferrooxidans ATCC 53993 6876802 YP_002219295.1 CDS Lferr_0838 NC_011206.1 797189 797725 D KEGG: dsy:DSY4578 hypothetical protein; hypothetical protein 797189..797725 Acidithiobacillus ferrooxidans ATCC 53993 6876803 YP_002219296.1 CDS Lferr_0839 NC_011206.1 797734 798591 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: xac:XAC2487 formate dehydrogenase accessory protein; formate dehydrogenase family accessory protein FdhD complement(797734..798591) Acidithiobacillus ferrooxidans ATCC 53993 6876804 YP_002219297.1 CDS Lferr_0840 NC_011206.1 798561 798860 R KEGG: dac:Daci_4812 hypothetical protein; hypothetical protein complement(798561..798860) Acidithiobacillus ferrooxidans ATCC 53993 6876805 YP_002219298.1 CDS Lferr_0841 NC_011206.1 798850 801126 R KEGG: mfa:Mfla_0338 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase molybdopterin subunit complement(798850..801126) Acidithiobacillus ferrooxidans ATCC 53993 6876806 YP_002219299.1 CDS Lferr_0842 NC_011206.1 801192 803285 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: acr:Acry_2789 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family sigma-54 specific transcriptional regulator 801192..803285 Acidithiobacillus ferrooxidans ATCC 53993 6876807 YP_002219300.1 CDS Lferr_0843 NC_011206.1 803333 803515 D hypothetical protein 803333..803515 Acidithiobacillus ferrooxidans ATCC 53993 6876808 YP_002219301.1 CDS Lferr_0844 NC_011206.1 803699 804283 D catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 803699..804283 Acidithiobacillus ferrooxidans ATCC 53993 6876809 YP_002219302.1 CDS Lferr_0845 NC_011206.1 804382 805491 D TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pla:Plav_2451 alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 804382..805491 Acidithiobacillus ferrooxidans ATCC 53993 6876810 YP_002219303.1 CDS Lferr_0846 NC_011206.1 805539 806345 D KEGG: reu:Reut_B3999 carboxylesterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 805539..806345 Acidithiobacillus ferrooxidans ATCC 53993 6876811 YP_002219304.1 CDS Lferr_0847 NC_011206.1 806370 807332 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mfa:Mfla_1669 transcriptional regulator CysB-like protein; LysR family transcriptional regulator complement(806370..807332) Acidithiobacillus ferrooxidans ATCC 53993 6876812 YP_002219305.1 CDS Lferr_0848 NC_011206.1 807388 808836 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bbt:BBta_0458 two-component response regulator protein; two component sigma-54 specific Fis family transcriptional regulator complement(807388..808836) Acidithiobacillus ferrooxidans ATCC 53993 6876813 YP_002219306.1 CDS Lferr_0849 NC_011206.1 809018 809980 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: sal:Sala_3197 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 809018..809980 Acidithiobacillus ferrooxidans ATCC 53993 6876814 YP_002219307.1 CDS Lferr_0850 NC_011206.1 810031 811629 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: bbt:BBta_0461 uptake hydrogenase large subunit; Hydrogen:quinone oxidoreductase 810031..811629 Acidithiobacillus ferrooxidans ATCC 53993 6876815 YP_002219308.1 CDS Lferr_0851 NC_011206.1 811719 812039 D KEGG: bbt:BBta_0462 hypothetical protein; hypothetical protein 811719..812039 Acidithiobacillus ferrooxidans ATCC 53993 6876816 YP_002219309.1 CDS Lferr_0852 NC_011206.1 812058 812390 D KEGG: sal:Sala_3200 hypothetical protein; hypothetical protein 812058..812390 Acidithiobacillus ferrooxidans ATCC 53993 6876817 YP_002219310.1 CDS Lferr_0853 NC_011206.1 812393 812866 D TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: ava:Ava_3947 peptidase M52, hydrogen uptake protein; hydrogenase maturation protease 812393..812866 Acidithiobacillus ferrooxidans ATCC 53993 6876818 YP_002219311.1 CDS Lferr_0854 NC_011206.1 812863 813192 D KEGG: msm:MSMEG_2264 peptidase M52, hydrogen uptake protein; hypothetical protein 812863..813192 Acidithiobacillus ferrooxidans ATCC 53993 6876819 YP_002219312.1 CDS Lferr_0855 NC_011206.1 813291 814271 D KEGG: bbt:BBta_0466 hypothetical protein; hypothetical protein 813291..814271 Acidithiobacillus ferrooxidans ATCC 53993 6876820 YP_002219313.1 CDS Lferr_0856 NC_011206.1 814296 814523 D KEGG: ter:Tery_3363 hypothetical protein; hypothetical protein 814296..814523 Acidithiobacillus ferrooxidans ATCC 53993 6876821 YP_002219314.1 CDS Lferr_0857 NC_011206.1 814552 814776 D KEGG: bbt:BBta_0468 hypothetical protein; hypothetical protein 814552..814776 Acidithiobacillus ferrooxidans ATCC 53993 6876822 YP_002219315.1 CDS Lferr_0858 NC_011206.1 814778 815683 D PFAM: nitrogen-fixing NifU domain protein; Rieske [2Fe-2S] domain protein; KEGG: sal:Sala_3205 nitrogen-fixing NifU-like; Rieske (2Fe-2S) domain-containing protein 814778..815683 Acidithiobacillus ferrooxidans ATCC 53993 6876823 YP_002219316.1 CDS Lferr_0859 NC_011206.1 815676 816872 D PFAM: NHL repeat containing protein; KEGG: sal:Sala_3206 NHL repeat; NHL repeat containing protein 815676..816872 Acidithiobacillus ferrooxidans ATCC 53993 6876824 YP_002219317.1 CDS Lferr_0860 NC_011206.1 816869 819280 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: sal:Sala_3207 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 816869..819280 Acidithiobacillus ferrooxidans ATCC 53993 6876825 YP_002219318.1 CDS Lferr_0861 NC_011206.1 819271 819564 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: ana:asr0695 hydrogenase expression/formation protein; hydrogenase assembly chaperone HypC/HupF 819271..819564 Acidithiobacillus ferrooxidans ATCC 53993 6876826 YP_002219319.1 CDS Lferr_0862 NC_011206.1 819580 820278 D TIGRFAM: phosphoheptose isomerase; KEGG: bbt:BBta_0473 D-sedoheptulose 7-phosphate isomerase; phosphoheptose isomerase 819580..820278 Acidithiobacillus ferrooxidans ATCC 53993 6876827 YP_002219320.1 CDS Lferr_0863 NC_011206.1 820262 821407 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: bbt:BBta_0474 hydrogenase expression/formation; hydrogenase expression/formation protein HypD 820262..821407 Acidithiobacillus ferrooxidans ATCC 53993 6876828 YP_002219321.1 CDS Lferr_0864 NC_011206.1 821407 822465 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: xau:Xaut_2187 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 821407..822465 Acidithiobacillus ferrooxidans ATCC 53993 6876829 YP_002219322.1 CDS Lferr_0865 NC_011206.1 822479 822808 D PFAM: hydrogenase expression/synthesis HypA; KEGG: ava:Ava_4607 hydrogenase expression/synthesis, HypA; hydrogenase nickel incorporation protein HypA 822479..822808 Acidithiobacillus ferrooxidans ATCC 53993 6876830 YP_002219323.1 CDS Lferr_0866 NC_011206.1 822808 823725 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: sen:SACE_3076 hydrogenase nickel incorporation protein HypB; hydrogenase nickel incorporation protein HypB 822808..823725 Acidithiobacillus ferrooxidans ATCC 53993 6876831 YP_002219324.1 CDS Lferr_0867 NC_011206.1 823751 825160 D PFAM: amino acid permease-associated region; KEGG: mse:Msed_0935 amino acid permease-associated region; amino acid permease-associated protein 823751..825160 Acidithiobacillus ferrooxidans ATCC 53993 6876832 YP_002219325.1 CDS Lferr_0868 NC_011206.1 825135 826475 D PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc00797 putative oxidoreductase protein; FAD dependent oxidoreductase 825135..826475 Acidithiobacillus ferrooxidans ATCC 53993 6876833 YP_002219326.1 CDS Lferr_0869 NC_011206.1 826560 826958 D PFAM: globin; KEGG: aeh:Mlg_2635 globin; globin 826560..826958 Acidithiobacillus ferrooxidans ATCC 53993 6876834 YP_002219327.1 CDS Lferr_0870 NC_011206.1 826973 828493 R TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase domain protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cya:CYA_0143 threonine dehydratase; threonine dehydratase, biosynthetic complement(826973..828493) Acidithiobacillus ferrooxidans ATCC 53993 6876835 YP_002219328.1 CDS Lferr_0871 NC_011206.1 828490 828861 R PFAM: regulatory protein LysR; KEGG: mms:mma_3664 molybdenum-binding transcriptional regulator; ModE family transcriptional regulator complement(828490..828861) Acidithiobacillus ferrooxidans ATCC 53993 6876836 YP_002219329.1 CDS Lferr_0872 NC_011206.1 828858 829823 R PFAM: alpha/beta hydrolase fold; KEGG: cvi:CV_3200 hypothetical protein; alpha/beta fold family hydrolase complement(828858..829823) Acidithiobacillus ferrooxidans ATCC 53993 6876837 YP_002219330.1 CDS Lferr_0873 NC_011206.1 829820 830029 R KEGG: rso:RS02214 hypothetical protein; hypothetical protein complement(829820..830029) Acidithiobacillus ferrooxidans ATCC 53993 6876838 YP_002219331.1 CDS Lferr_0874 NC_011206.1 830375 831151 D KEGG: dar:Daro_3934 conserved hypothetical protein, predicted autoinducer synthesis protein family; autoinducer synthesis protein 830375..831151 Acidithiobacillus ferrooxidans ATCC 53993 6876839 YP_002219332.1 CDS Lferr_0875 NC_011206.1 831148 832050 D TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: eba:ebA5567 putative 1-acylglycerol-3-phosphate O-acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 831148..832050 Acidithiobacillus ferrooxidans ATCC 53993 6876840 YP_002219333.1 CDS Lferr_0876 NC_011206.1 832070 833134 R KEGG: aeh:Mlg_2765 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase complement(832070..833134) Acidithiobacillus ferrooxidans ATCC 53993 6876841 YP_002219334.1 CDS Lferr_0877 NC_011206.1 833138 834535 R TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pmy:Pmen_0551 glutamate synthase subunit beta; glutamate synthase small subunit complement(833138..834535) Acidithiobacillus ferrooxidans ATCC 53993 6876842 YP_002219335.1 CDS Lferr_0878 NC_011206.1 834559 838986 R PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: aeh:Mlg_2763 glutamate synthase subunit alpha; glutamate synthase complement(834559..838986) Acidithiobacillus ferrooxidans ATCC 53993 6876843 YP_002219336.1 CDS Lferr_0879 NC_011206.1 839124 840296 R KEGG: bch:Bcen2424_0394 deoxyguanosinetriphosphate triphosphohydrolase-like protein; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase complement(839124..840296) Acidithiobacillus ferrooxidans ATCC 53993 6876844 YP_002219337.1 CDS Lferr_0880 NC_011206.1 840289 841131 R TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX; KEGG: mgm:Mmc1_0404 thymidylate synthase, flavin-dependent; thymidylate synthase, flavin-dependent complement(840289..841131) Acidithiobacillus ferrooxidans ATCC 53993 6876845 YP_002219338.1 CDS Lferr_0881 NC_011206.1 841124 842218 R PFAM: 3-dehydroquinate synthase; KEGG: mms:mma_3363 bifunctional shikimate kinase/3-dehydroquinate synthase; 3-dehydroquinate synthase complement(841124..842218) Acidithiobacillus ferrooxidans ATCC 53993 6876846 YP_002219339.1 CDS Lferr_0882 NC_011206.1 842324 842863 R PFAM: shikimate kinase; KEGG: tcx:Tcr_2137 shikimate kinase; shikimate kinase complement(842324..842863) Acidithiobacillus ferrooxidans ATCC 53993 6876847 YP_002219340.1 CDS Lferr_0883 NC_011206.1 842860 845214 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: mpt:Mpe_A3109 fimbrial biogenesis protein; type IV pilus secretin PilQ complement(842860..845214) Acidithiobacillus ferrooxidans ATCC 53993 6876848 YP_002219341.1 CDS Lferr_0884 NC_011206.1 845259 845807 R PFAM: Pilus assembly protein PilP; KEGG: pat:Patl_0668 pilus assembly protein, PilQ; Pilus assembly protein PilP complement(845259..845807) Acidithiobacillus ferrooxidans ATCC 53993 6876849 YP_002219342.1 CDS Lferr_0885 NC_011206.1 845804 846457 R PFAM: Pilus assembly protein PilO; KEGG: mfa:Mfla_2459 pilus assembly protein, PilO; Pilus assembly protein PilO complement(845804..846457) Acidithiobacillus ferrooxidans ATCC 53993 6876850 YP_002219343.1 CDS Lferr_0886 NC_011206.1 846454 847047 R PFAM: Fimbrial assembly family protein; KEGG: azo:azo3649 probable type 4 fimbrial biogenesis protein; fimbrial assembly family protein complement(846454..847047) Acidithiobacillus ferrooxidans ATCC 53993 6876851 YP_002219344.1 CDS Lferr_0888 NC_011206.1 848337 848870 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sat:SYN_00164 tRNA-specific adenosine deaminase; zinc-binding CMP/dCMP deaminase 848337..848870 Acidithiobacillus ferrooxidans ATCC 53993 6876853 YP_002219345.1 CDS Lferr_0889 NC_011206.1 848867 849298 D PFAM: protein of unknown function UPF0047; KEGG: mxa:MXAN_1174 conserved hypothetical protein TIGR00149; hypothetical protein 848867..849298 Acidithiobacillus ferrooxidans ATCC 53993 6876854 YP_002219346.1 CDS Lferr_0890 NC_011206.1 849298 849723 D KEGG: tbd:Tbd_0692 hypothetical protein; hypothetical protein 849298..849723 Acidithiobacillus ferrooxidans ATCC 53993 6876855 YP_002219347.1 CDS Lferr_0891 NC_011206.1 849786 851324 D PFAM: DNA mismatch repair protein MutS domain protein; KEGG: sth:STH1115 DNA mismatch repair protein; DNA mismatch repair protein MutS domain-containing protein 849786..851324 Acidithiobacillus ferrooxidans ATCC 53993 6876856 YP_002219348.1 CDS Lferr_0892 NC_011206.1 851453 853198 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mfa:Mfla_2119 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit 851453..853198 Acidithiobacillus ferrooxidans ATCC 53993 6876857 YP_002219349.1 CDS Lferr_0893 NC_011206.1 853195 853686 D TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: tbd:Tbd_1990 acetolactate synthase, small subunit; acetolactate synthase small subunit 853195..853686 Acidithiobacillus ferrooxidans ATCC 53993 6876858 YP_002219350.1 CDS Lferr_0894 NC_011206.1 853738 854754 D KEGG: mca:MCA2272 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; CoA-binding domain protein; Acetohydroxy acid isomeroreductase catalytic domain protein; ketol-acid reductoisomerase 853738..854754 Acidithiobacillus ferrooxidans ATCC 53993 6876859 YP_002219351.1 CDS Lferr_0895 NC_011206.1 854873 855535 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 854873..855535 Acidithiobacillus ferrooxidans ATCC 53993 6876860 YP_002219352.1 CDS Lferr_0896 NC_011206.1 855532 856284 D KEGG: mca:MCA2273 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 855532..856284 Acidithiobacillus ferrooxidans ATCC 53993 6876861 YP_002219353.1 CDS Lferr_0897 NC_011206.1 856260 858134 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(856260..858134) Acidithiobacillus ferrooxidans ATCC 53993 6876862 YP_002219354.1 CDS Lferr_0898 NC_011206.1 858301 858726 D PFAM: UspA domain protein; KEGG: reh:H16_B1432 universal stress protein, UspA family; UspA domain-containing protein 858301..858726 Acidithiobacillus ferrooxidans ATCC 53993 6876863 YP_002219355.1 CDS Lferr_0899 NC_011206.1 858815 859240 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(858815..859240) Acidithiobacillus ferrooxidans ATCC 53993 6876864 YP_002219356.1 CDS Lferr_0900 NC_011206.1 859301 862753 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: psa:PST_1855 chromosome segregation SMC protein, putative; chromosome segregation protein SMC 859301..862753 Acidithiobacillus ferrooxidans ATCC 53993 6876865 YP_002219357.1 CDS Lferr_0901 NC_011206.1 863013 863981 D KEGG: bxe:Bxe_B2627 GAF sensor diguanylate phosphsdiesterase (EAL domain); hypothetical protein 863013..863981 Acidithiobacillus ferrooxidans ATCC 53993 6876866 YP_002219358.1 CDS Lferr_0902 NC_011206.1 863987 864679 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pae:PA0335 hypothetical protein; HAD-superfamily hydrolase complement(863987..864679) Acidithiobacillus ferrooxidans ATCC 53993 6876867 YP_002219359.1 CDS Lferr_0903 NC_011206.1 864796 866811 D KEGG: aeh:Mlg_0681 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase 864796..866811 Acidithiobacillus ferrooxidans ATCC 53993 6876868 YP_002219360.1 CDS Lferr_0904 NC_011206.1 866814 867329 D TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: bte:BTH_I3307 ATP synthase F1, epsilon subunit; ATP synthase F1 subunit epsilon 866814..867329 Acidithiobacillus ferrooxidans ATCC 53993 6876869 YP_002219361.1 CDS Lferr_0905 NC_011206.1 867346 867996 D PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aeh:Mlg_0626 methyltransferase type 11; type 11 methyltransferase 867346..867996 Acidithiobacillus ferrooxidans ATCC 53993 6876870 YP_002219362.1 CDS Lferr_0906 NC_011206.1 868140 868874 R PFAM: protein of unknown function DUF45; KEGG: sbm:Shew185_2198 protein of unknown function DUF45; hypothetical protein complement(868140..868874) Acidithiobacillus ferrooxidans ATCC 53993 6876871 YP_002219363.1 CDS Lferr_0907 NC_011206.1 869119 870027 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mrd:Mrad2831_4570 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(869119..870027) Acidithiobacillus ferrooxidans ATCC 53993 6876872 YP_002219364.1 CDS Lferr_0908 NC_011206.1 870303 872639 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX1075 TonB-dependent outer membrane receptor; TonB-dependent receptor 870303..872639 Acidithiobacillus ferrooxidans ATCC 53993 6876873 YP_002219365.1 CDS Lferr_0909 NC_011206.1 872866 873672 D PFAM: protein of unknown function DUF81; KEGG: mfa:Mfla_2237 protein of unknown function DUF81; hypothetical protein 872866..873672 Acidithiobacillus ferrooxidans ATCC 53993 6876874 YP_002219366.1 CDS Lferr_0911 NC_011206.1 874407 875111 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: acr:Acry_3610 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 874407..875111 Acidithiobacillus ferrooxidans ATCC 53993 6876876 YP_002219367.1 CDS Lferr_0912 NC_011206.1 875159 875557 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: acr:Acry_1461 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 875159..875557 Acidithiobacillus ferrooxidans ATCC 53993 6876877 YP_002219368.1 CDS Lferr_0913 NC_011206.1 875647 876405 D TIGRFAM: TonB family protein; KEGG: acr:Acry_0296 TonB family protein; TonB family protein 875647..876405 Acidithiobacillus ferrooxidans ATCC 53993 6876878 YP_002219369.1 CDS Lferr_0914 NC_011206.1 876463 877887 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: kra:Krad_3647 permease for cytosine/purines uracil thiamine allantoin; cytosine/purines uracil thiamine allantoin permease 876463..877887 Acidithiobacillus ferrooxidans ATCC 53993 6876879 YP_002219370.1 CDS Lferr_0915 NC_011206.1 877884 879113 D PFAM: amidohydrolase; KEGG: reu:Reut_A2429 guanine deaminase; Guanine deaminase 877884..879113 Acidithiobacillus ferrooxidans ATCC 53993 6876880 YP_002219371.1 CDS Lferr_0916 NC_011206.1 879160 880203 D KEGG: hch:HCH_01503 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 879160..880203 Acidithiobacillus ferrooxidans ATCC 53993 6876881 YP_002219372.1 CDS Lferr_0917 NC_011206.1 880200 881228 D KEGG: gdi:GDI0784 putative purine nucleoside permease; purine nucleoside permease-like protein 880200..881228 Acidithiobacillus ferrooxidans ATCC 53993 6876882 YP_002219373.1 CDS Lferr_0918 NC_011206.1 881290 883548 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: scl:sce5895 putative xanthine dehydrogenase; xanthine dehydrogenase 881290..883548 Acidithiobacillus ferrooxidans ATCC 53993 6876883 YP_002219374.1 CDS Lferr_0919 NC_011206.1 883551 884000 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mta:Moth_1961 (2Fe-2S)-binding; (2Fe-2S)-binding domain-containing protein 883551..884000 Acidithiobacillus ferrooxidans ATCC 53993 6876884 YP_002219375.1 CDS Lferr_0920 NC_011206.1 884000 884866 D PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: scl:sce5893 putative xanthine dehydrogenase; molybdopterin dehydrogenase FAD-binding 884000..884866 Acidithiobacillus ferrooxidans ATCC 53993 6876885 YP_002219376.1 CDS Lferr_0921 NC_011206.1 884870 885454 D KEGG: cyb:CYB_2111 hypothetical protein; hypothetical protein 884870..885454 Acidithiobacillus ferrooxidans ATCC 53993 6876886 YP_002219377.1 CDS Lferr_0922 NC_011206.1 885473 886564 D KEGG: mta:Moth_2120 cyanuric acid amidohydrolase; TIGRFAM: ring-opening amidohydrolase; PFAM: Amidohydrolase ring-opening AtzD/TrzD; ring-opening amidohydrolase 885473..886564 Acidithiobacillus ferrooxidans ATCC 53993 6876887 YP_002219378.1 CDS Lferr_0923 NC_011206.1 886561 887502 D PFAM: protein of unknown function DUF182; KEGG: sit:TM1040_0497 protein of unknown function DUF182; hypothetical protein 886561..887502 Acidithiobacillus ferrooxidans ATCC 53993 6876888 YP_002219379.1 CDS Lferr_0924 NC_011206.1 887519 887719 D hypothetical protein 887519..887719 Acidithiobacillus ferrooxidans ATCC 53993 6876889 YP_002219380.1 CDS Lferr_0925 NC_011206.1 887716 889113 D TIGRFAM: amidohydrolase, AtzE family; PFAM: Amidase; KEGG: azc:AZC_1515 glutamyl-tRNA(Gln) amidotransferase; amidohydrolase, AtzE family 887716..889113 Acidithiobacillus ferrooxidans ATCC 53993 6876890 YP_002219381.1 CDS Lferr_0926 NC_011206.1 889127 889513 D KEGG: mms:mma_3468 hypothetical protein; hypothetical protein 889127..889513 Acidithiobacillus ferrooxidans ATCC 53993 6876891 YP_002219382.1 CDS Lferr_0927 NC_011206.1 889522 890130 D KEGG: swo:Swol_1816 hypothetical protein; hypothetical protein 889522..890130 Acidithiobacillus ferrooxidans ATCC 53993 6876892 YP_002219383.1 CDS Lferr_0928 NC_011206.1 890127 891746 D KEGG: aeh:Mlg_2047 Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 890127..891746 Acidithiobacillus ferrooxidans ATCC 53993 6876893 YP_002219384.1 CDS Lferr_0929 NC_011206.1 892178 892702 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ava:Ava_2287 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein complement(892178..892702) Acidithiobacillus ferrooxidans ATCC 53993 6876894 YP_002219385.1 CDS Lferr_0930 NC_011206.1 893061 893801 D PFAM: polysaccharide deacetylase; KEGG: mpt:Mpe_A1323 polysaccharide deacetylase family protein; polysaccharide deacetylase 893061..893801 Acidithiobacillus ferrooxidans ATCC 53993 6876895 YP_002219386.1 CDS Lferr_0931 NC_011206.1 893893 895212 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: pol:Bpro_3311 tryptophan halogenase; tryptophan halogenase 893893..895212 Acidithiobacillus ferrooxidans ATCC 53993 6876896 YP_002219387.1 CDS Lferr_0932 NC_011206.1 895215 896288 D PFAM: Endoribonuclease L-PSP; KEGG: tbd:Tbd_2762 hypothetical protein; endoribonuclease L-PSP 895215..896288 Acidithiobacillus ferrooxidans ATCC 53993 6876897 YP_002219388.1 CDS Lferr_0933 NC_011206.1 896285 897088 D PFAM: phospholipid/glycerol acyltransferase; KEGG: tbd:Tbd_2760 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 896285..897088 Acidithiobacillus ferrooxidans ATCC 53993 6876898 YP_002219389.1 CDS Lferr_0934 NC_011206.1 897085 897846 D PFAM: glycosyl transferase family 2; KEGG: pol:Bpro_3309 glycosyl transferase, family 2; family 2 glycosyl transferase 897085..897846 Acidithiobacillus ferrooxidans ATCC 53993 6876899 YP_002219390.1 CDS Lferr_0935 NC_011206.1 897828 899174 R PFAM: sodium/hydrogen exchanger; KEGG: mca:MCA0928 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger complement(897828..899174) Acidithiobacillus ferrooxidans ATCC 53993 6876900 YP_002219391.1 CDS fabG NC_011206.1 899190 899912 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(899190..899912) Acidithiobacillus ferrooxidans ATCC 53993 6876901 YP_002219392.1 CDS Lferr_0937 NC_011206.1 899905 900405 R KEGG: dar:Daro_4187 hypothetical protein; hypothetical protein complement(899905..900405) Acidithiobacillus ferrooxidans ATCC 53993 6876902 YP_002219393.1 CDS Lferr_0938 NC_011206.1 900396 901211 R KEGG: pol:Bpro_3305 hypothetical protein; hypothetical protein complement(900396..901211) Acidithiobacillus ferrooxidans ATCC 53993 6876903 YP_002219394.1 CDS Lferr_0939 NC_011206.1 901224 902417 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(901224..902417) Acidithiobacillus ferrooxidans ATCC 53993 6876904 YP_002219395.1 CDS Lferr_0940 NC_011206.1 902721 902987 D KEGG: mca:MCA0914 acyl carrier protein; acyl carrier protein 902721..902987 Acidithiobacillus ferrooxidans ATCC 53993 6876905 YP_002219396.1 CDS Lferr_0941 NC_011206.1 903061 905415 R KEGG: pna:Pnap_1374 hypothetical protein; hypothetical protein complement(903061..905415) Acidithiobacillus ferrooxidans ATCC 53993 6876906 YP_002219397.1 CDS Lferr_0942 NC_011206.1 905412 906128 R KEGG: pna:Pnap_1375 putative transmembrane protein; transmembrane protein complement(905412..906128) Acidithiobacillus ferrooxidans ATCC 53993 6876907 YP_002219398.1 CDS Lferr_0943 NC_011206.1 906146 907066 R PFAM: lipid A biosynthesis acyltransferase; KEGG: eba:ebA7063 putative lauroyl/myristoyl acyltransferase involved in LPS biosynthesis; lipid A biosynthesis acyltransferase complement(906146..907066) Acidithiobacillus ferrooxidans ATCC 53993 6876908 YP_002219399.1 CDS Lferr_0945 NC_011206.1 908736 909050 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(908736..909050) Acidithiobacillus ferrooxidans ATCC 53993 6876910 YP_002219400.1 CDS Lferr_0946 NC_011206.1 909172 910491 R KEGG: sma:SAV256 transposase; hypothetical protein complement(909172..910491) Acidithiobacillus ferrooxidans ATCC 53993 6876911 YP_002219401.1 CDS Lferr_0947 NC_011206.1 910817 911557 R KEGG: pna:Pnap_1378 putative transmembrane protein; transmembrane protein complement(910817..911557) Acidithiobacillus ferrooxidans ATCC 53993 6876912 YP_002219402.1 CDS Lferr_0948 NC_011206.1 911708 912040 R hypothetical protein complement(911708..912040) Acidithiobacillus ferrooxidans ATCC 53993 6876913 YP_002219403.1 CDS Lferr_0949 NC_011206.1 912166 913710 R PFAM: GH3 auxin-responsive promoter; KEGG: gfo:GFO_0242 conserved hypothetical protein, auxin-inducible GH3 family; GH3 auxin-responsive promoter complement(912166..913710) Acidithiobacillus ferrooxidans ATCC 53993 6876914 YP_002219404.1 CDS Lferr_0950 NC_011206.1 913707 915986 R PFAM: peptidase S45 penicillin amidase; KEGG: rca:Rcas_1653 peptidase S45 penicillin amidase; peptidase S45 penicillin amidase complement(913707..915986) Acidithiobacillus ferrooxidans ATCC 53993 6876915 YP_002219405.1 CDS Lferr_0951 NC_011206.1 916282 917331 R PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: acr:Acry_1124 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase FAD-binding complement(916282..917331) Acidithiobacillus ferrooxidans ATCC 53993 6876916 YP_002219406.1 CDS Lferr_0952 NC_011206.1 917331 919679 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: acr:Acry_1125 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(917331..919679) Acidithiobacillus ferrooxidans ATCC 53993 6876917 YP_002219407.1 CDS Lferr_0953 NC_011206.1 919682 920209 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bpt:Bpet3936 putative xanthine dehydrogenase; (2Fe-2S)-binding domain-containing protein complement(919682..920209) Acidithiobacillus ferrooxidans ATCC 53993 6876918 YP_002219408.1 CDS Lferr_0954 NC_011206.1 920457 920666 R hypothetical protein complement(920457..920666) Acidithiobacillus ferrooxidans ATCC 53993 6876919 YP_002219409.1 CDS Lferr_0955 NC_011206.1 920890 922287 R PFAM: major facilitator superfamily MFS_1; KEGG: neu:NE2454 MFS family transporter; major facilitator superfamily protein complement(920890..922287) Acidithiobacillus ferrooxidans ATCC 53993 6876920 YP_002219410.1 CDS Lferr_0956 NC_011206.1 922593 923978 R PFAM: Chloride channel core; KEGG: pla:Plav_2437 chloride channel core; chloride channel core protein complement(922593..923978) Acidithiobacillus ferrooxidans ATCC 53993 6876921 YP_002219411.1 CDS Lferr_0957 NC_011206.1 923992 925839 R PFAM: CBS domain containing protein; Chloride channel core; KEGG: pla:Plav_2437 chloride channel core; chloride channel core protein complement(923992..925839) Acidithiobacillus ferrooxidans ATCC 53993 6876922 YP_002219412.1 CDS Lferr_0958 NC_011206.1 925929 926825 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB4177 putative transcriptional regulator; LysR family transcriptional regulator 925929..926825 Acidithiobacillus ferrooxidans ATCC 53993 6876923 YP_002219413.1 CDS Lferr_0959 NC_011206.1 926975 929404 R KEGG: gme:Gmet_3497 plasma-membrane proton-efflux P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; plasma-membrane proton-efflux P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; plasma-membrane proton-efflux P-type ATPase complement(926975..929404) Acidithiobacillus ferrooxidans ATCC 53993 6876924 YP_002219414.1 CDS Lferr_0961 NC_011206.1 930558 931034 R KEGG: hch:HCH_00937 predicted phosphoesterases, related to the Icc protein; phosphoesterase complement(930558..931034) Acidithiobacillus ferrooxidans ATCC 53993 6876926 YP_002219415.1 CDS Lferr_0962 NC_011206.1 931284 931595 R KEGG: eba:ebA1549 hypothetical protein; hypothetical protein complement(931284..931595) Acidithiobacillus ferrooxidans ATCC 53993 6876927 YP_002219416.1 CDS Lferr_0963 NC_011206.1 931588 931845 R KEGG: mfa:Mfla_1455 hypothetical protein; hypothetical protein complement(931588..931845) Acidithiobacillus ferrooxidans ATCC 53993 6876928 YP_002219417.1 CDS Lferr_0964 NC_011206.1 932139 933701 D PFAM: N-6 DNA methylase; KEGG: ava:Ava_1159 N-6 DNA methylase; N-6 DNA methylase 932139..933701 Acidithiobacillus ferrooxidans ATCC 53993 6876929 YP_002219418.1 CDS Lferr_0965 NC_011206.1 933698 935266 D KEGG: cph:Cpha266_0634 putative transcriptional regulator; transcriptional regulator 933698..935266 Acidithiobacillus ferrooxidans ATCC 53993 6876930 YP_002219419.1 CDS Lferr_0966 NC_011206.1 935263 936330 D KEGG: dde:Dde_2497 hypothetical protein; hypothetical protein 935263..936330 Acidithiobacillus ferrooxidans ATCC 53993 6876931 YP_002219420.1 CDS Lferr_0967 NC_011206.1 936311 937591 D PFAM: restriction modification system DNA specificity domain; KEGG: dge:Dgeo_3109 restriction modification system DNA specificity domain; restriction modification system DNA specificity protein 936311..937591 Acidithiobacillus ferrooxidans ATCC 53993 6876932 YP_002219421.1 CDS Lferr_0968 NC_011206.1 937792 940542 D KEGG: sbn:Sbal195_4550 hypothetical protein; hypothetical protein 937792..940542 Acidithiobacillus ferrooxidans ATCC 53993 6876933 YP_002219422.1 CDS Lferr_0969 NC_011206.1 940548 943469 D KEGG: ava:Ava_1156 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; HsdR family type I site-specific deoxyribonuclease 940548..943469 Acidithiobacillus ferrooxidans ATCC 53993 6876934 YP_002219423.1 CDS Lferr_0970 NC_011206.1 943487 943822 D PFAM: protein of unknown function DUF45; KEGG: ava:Ava_1155 metal-dependent hydrolase-like; hypothetical protein 943487..943822 Acidithiobacillus ferrooxidans ATCC 53993 6876935 YP_002219424.1 CDS Lferr_0971 NC_011206.1 944490 946517 D KEGG: pmy:Pmen_2737 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; SMART: DEAD-like helicases; excinuclease ABC subunit B 944490..946517 Acidithiobacillus ferrooxidans ATCC 53993 6876937 YP_002219425.1 CDS Lferr_0972 NC_011206.1 946622 947671 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pst:PSPTO_2697 oxidoreductase, zinc-binding; alcohol dehydrogenase GroES domain-containing protein 946622..947671 Acidithiobacillus ferrooxidans ATCC 53993 6876938 YP_002219426.1 CDS pyrG NC_011206.1 947886 949523 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 947886..949523 Acidithiobacillus ferrooxidans ATCC 53993 6876939 YP_002219427.1 CDS Lferr_0974 NC_011206.1 949520 950365 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 949520..950365 Acidithiobacillus ferrooxidans ATCC 53993 6876940 YP_002219428.1 CDS eno NC_011206.1 950362 951642 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 950362..951642 Acidithiobacillus ferrooxidans ATCC 53993 6876941 YP_002219429.1 CDS Lferr_0976 NC_011206.1 951728 952063 D PFAM: Septum formation initiator; KEGG: mfa:Mfla_1908 septum formation initiator; septum formation initiator 951728..952063 Acidithiobacillus ferrooxidans ATCC 53993 6876942 YP_002219430.1 CDS Lferr_0977 NC_011206.1 952117 952677 R TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: nmu:Nmul_A1268 translation elongation factor P; translation elongation factor P complement(952117..952677) Acidithiobacillus ferrooxidans ATCC 53993 6876943 YP_002219431.1 CDS Lferr_0978 NC_011206.1 952768 953070 D PFAM: protein of unknown function DUF971; KEGG: mgm:Mmc1_1632 protein of unknown function DUF971; hypothetical protein 952768..953070 Acidithiobacillus ferrooxidans ATCC 53993 6876944 YP_002219432.1 CDS Lferr_0979 NC_011206.1 953103 954974 D TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; KEGG: aeh:Mlg_1362 excinuclease ABC subunit C; excinuclease ABC subunit C 953103..954974 Acidithiobacillus ferrooxidans ATCC 53993 6876945 YP_002219433.1 CDS Lferr_0980 NC_011206.1 954977 955567 D KEGG: noc:Noc_1643 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 954977..955567 Acidithiobacillus ferrooxidans ATCC 53993 6876946 YP_002219434.1 CDS Lferr_0981 NC_011206.1 955831 956571 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cvi:CV_2708 probable transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 955831..956571 Acidithiobacillus ferrooxidans ATCC 53993 6876949 YP_002219435.1 CDS Lferr_0982 NC_011206.1 956600 957013 R PFAM: protein of unknown function DUF488; KEGG: ace:Acel_0623 protein of unknown function DUF488; hypothetical protein complement(956600..957013) Acidithiobacillus ferrooxidans ATCC 53993 6876950 YP_002219436.1 CDS Lferr_0983 NC_011206.1 957036 958247 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nmu:Nmul_A0355 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(957036..958247) Acidithiobacillus ferrooxidans ATCC 53993 6876951 YP_002219437.1 CDS Lferr_0984 NC_011206.1 958329 959321 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: aeh:Mlg_2530 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(958329..959321) Acidithiobacillus ferrooxidans ATCC 53993 6876952 YP_002219438.1 CDS Lferr_0985 NC_011206.1 959376 959837 R PFAM: globin; KEGG: amr:AM1_4406 globin domain protein; globin complement(959376..959837) Acidithiobacillus ferrooxidans ATCC 53993 6876953 YP_002219439.1 CDS Lferr_0986 NC_011206.1 959964 961133 R PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A3583 MFS efflux pump, membrane fusion protein, EmrA subfamily; secretion protein HlyD family protein complement(959964..961133) Acidithiobacillus ferrooxidans ATCC 53993 6876954 YP_002219440.1 CDS Lferr_0987 NC_011206.1 961130 962563 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reh:H16_A2296 outer membrane efflux protein; NodT family RND efflux system, outer membrane lipoprotein complement(961130..962563) Acidithiobacillus ferrooxidans ATCC 53993 6876955 YP_002219441.1 CDS Lferr_0988 NC_011206.1 962563 964056 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1385 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter complement(962563..964056) Acidithiobacillus ferrooxidans ATCC 53993 6876956 YP_002219442.1 CDS Lferr_0989 NC_011206.1 964213 965136 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppu:PP_3660 transcriptional regulator, LysR family; LysR family transcriptional regulator 964213..965136 Acidithiobacillus ferrooxidans ATCC 53993 6876957 YP_002219443.1 CDS Lferr_0990 NC_011206.1 965133 965399 R hypothetical protein complement(965133..965399) Acidithiobacillus ferrooxidans ATCC 53993 6876958 YP_002219444.1 CDS Lferr_0991 NC_011206.1 965462 965686 R hypothetical protein complement(965462..965686) Acidithiobacillus ferrooxidans ATCC 53993 6876959 YP_002219445.1 CDS Lferr_0992 NC_011206.1 965755 966003 D KEGG: bvi:Bcep1808_7013 RNA-directed DNA polymerase (reverse transcriptase); hypothetical protein 965755..966003 Acidithiobacillus ferrooxidans ATCC 53993 6876960 YP_002219446.1 CDS Lferr_0993 NC_011206.1 966006 966392 D PFAM: Group II intron maturase-specific domain protein; KEGG: bvi:Bcep1808_7013 RNA-directed DNA polymerase (reverse transcriptase); Group II intron maturase-specific domain-containing protein 966006..966392 Acidithiobacillus ferrooxidans ATCC 53993 6876961 YP_002219447.1 CDS Lferr_0994 NC_011206.1 966553 966795 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: eba:ebD103 putative antitoxin of toxin-antitoxin stability system; prevent-host-death family protein 966553..966795 Acidithiobacillus ferrooxidans ATCC 53993 6876962 YP_002219448.1 CDS Lferr_0995 NC_011206.1 966792 967055 D TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: eba:ebD102 hypothetical protein; Txe/YoeB family addiction module toxin 966792..967055 Acidithiobacillus ferrooxidans ATCC 53993 6876963 YP_002219449.1 CDS Lferr_0996 NC_011206.1 967261 967665 D PFAM: heat shock protein Hsp20; KEGG: rfr:Rfer_3005 hypothetical protein; heat shock protein Hsp20 967261..967665 Acidithiobacillus ferrooxidans ATCC 53993 6876964 YP_002219450.1 CDS Lferr_0997 NC_011206.1 967662 970028 D KEGG: bbt:BBta_7794 DNA-binding ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 967662..970028 Acidithiobacillus ferrooxidans ATCC 53993 6876965 YP_002219451.1 CDS Lferr_0999 NC_011206.1 971297 971773 R PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_4891 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(971297..971773) Acidithiobacillus ferrooxidans ATCC 53993 6876967 YP_002219452.1 CDS Lferr_1000 NC_011206.1 971979 972524 R hypothetical protein complement(971979..972524) Acidithiobacillus ferrooxidans ATCC 53993 6876968 YP_002219453.1 CDS Lferr_1001 NC_011206.1 973042 973554 R PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_3433 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(973042..973554) Acidithiobacillus ferrooxidans ATCC 53993 6876969 YP_002219454.1 CDS Lferr_1002 NC_011206.1 973610 973813 R KEGG: cch:Cag_1571 hypothetical protein; hypothetical protein complement(973610..973813) Acidithiobacillus ferrooxidans ATCC 53993 6876970 YP_002219455.1 CDS Lferr_1003 NC_011206.1 974146 974817 R PFAM: regulatory protein LysR; KEGG: bam:Bamb_6449 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(974146..974817) Acidithiobacillus ferrooxidans ATCC 53993 6876971 YP_002219456.1 CDS Lferr_1005 NC_011206.1 975628 976296 D KEGG: bam:Bamb_6445 anti-ECFsigma factor, ChrR; anti-ECF sigma factor ChrR 975628..976296 Acidithiobacillus ferrooxidans ATCC 53993 6876973 YP_002219457.1 CDS Lferr_1006 NC_011206.1 976293 977456 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bam:Bamb_6444 amine oxidase; amine oxidase 976293..977456 Acidithiobacillus ferrooxidans ATCC 53993 6876974 YP_002219458.1 CDS Lferr_1009 NC_011206.1 978030 978365 D KEGG: stt:t4252 shufflon-specific DNA recombinase; shufflon-specific DNA recombinase 978030..978365 Acidithiobacillus ferrooxidans ATCC 53993 6876977 YP_002219459.1 CDS Lferr_1010 NC_011206.1 978393 978851 D PFAM: protein of unknown function DUF74; KEGG: acr:Acry_1752 protein of unknown function DUF74; hypothetical protein 978393..978851 Acidithiobacillus ferrooxidans ATCC 53993 6876978 YP_002219460.1 CDS Lferr_1011 NC_011206.1 979099 979353 D PFAM: protein of unknown function DUF172; KEGG: bam:Bamb_4837 prevent-host-death family protein; hypothetical protein 979099..979353 Acidithiobacillus ferrooxidans ATCC 53993 6876979 YP_002219461.1 CDS Lferr_1012 NC_011206.1 979343 979624 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: eca:ECA0326 putative plasmid stability protein; RelE/StbE family addiction module toxin 979343..979624 Acidithiobacillus ferrooxidans ATCC 53993 6876980 YP_002219462.1 CDS Lferr_1013 NC_011206.1 979628 979783 D hypothetical protein 979628..979783 Acidithiobacillus ferrooxidans ATCC 53993 6876981 YP_002219463.1 CDS Lferr_1014 NC_011206.1 980167 981390 R PFAM: protein of unknown function Met10; methyltransferase small; KEGG: tcx:Tcr_1849 methyltransferase small; methyltransferase small complement(980167..981390) Acidithiobacillus ferrooxidans ATCC 53993 6876983 YP_002219464.1 CDS Lferr_1015 NC_011206.1 981545 982597 D KEGG: pca:Pcar_2170 translation initiation factor, putative, aIF-2BI family; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 981545..982597 Acidithiobacillus ferrooxidans ATCC 53993 6876984 YP_002219465.1 CDS Lferr_1016 NC_011206.1 982654 985191 D KEGG: lpf:lpl1368 DNA gyrase, subunit A, type II topoisomerase; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 982654..985191 Acidithiobacillus ferrooxidans ATCC 53993 6876985 YP_002219466.1 CDS Lferr_1017 NC_011206.1 985199 986287 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 985199..986287 Acidithiobacillus ferrooxidans ATCC 53993 6876986 YP_002219467.1 CDS Lferr_1018 NC_011206.1 986299 987882 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 986299..987882 Acidithiobacillus ferrooxidans ATCC 53993 6876987 YP_002219468.1 CDS Lferr_1019 NC_011206.1 987879 988955 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: noc:Noc_0174 chorismate mutase; chorismate mutase 987879..988955 Acidithiobacillus ferrooxidans ATCC 53993 6876988 YP_002219469.1 CDS Lferr_1020 NC_011206.1 988957 990054 D TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: noc:Noc_0175 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 988957..990054 Acidithiobacillus ferrooxidans ATCC 53993 6876989 YP_002219470.1 CDS Lferr_1021 NC_011206.1 990059 991075 D TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: nmu:Nmul_A2194 phospho-2-dehydro-3-deoxyheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate aldolase 990059..991075 Acidithiobacillus ferrooxidans ATCC 53993 6876990 YP_002219471.1 CDS Lferr_1022 NC_011206.1 991077 991952 D PFAM: Prephenate dehydrogenase; KEGG: bpt:Bpet1887 TyrA; prephenate dehydrogenase 991077..991952 Acidithiobacillus ferrooxidans ATCC 53993 6876991 YP_002219472.1 CDS Lferr_1023 NC_011206.1 991956 993257 D TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: aeh:Mlg_0929 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 991956..993257 Acidithiobacillus ferrooxidans ATCC 53993 6876992 YP_002219473.1 CDS Lferr_1024 NC_011206.1 993254 993934 D KEGG: aeh:Mlg_0930 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 993254..993934 Acidithiobacillus ferrooxidans ATCC 53993 6876993 YP_002219474.1 CDS Lferr_1025 NC_011206.1 994012 995718 D TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; KEGG: noc:Noc_0180 30S ribosomal protein S1; 30S ribosomal protein S1 994012..995718 Acidithiobacillus ferrooxidans ATCC 53993 6876994 YP_002219475.1 CDS Lferr_1026 NC_011206.1 995875 996180 D TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: pnu:Pnuc_0501 integration host factor, beta subunit; integration host factor subunit beta 995875..996180 Acidithiobacillus ferrooxidans ATCC 53993 6876995 YP_002219476.1 CDS Lferr_1027 NC_011206.1 996194 997351 D KEGG: aeh:Mlg_0934 hypothetical protein; hypothetical protein 996194..997351 Acidithiobacillus ferrooxidans ATCC 53993 6876996 YP_002219477.1 CDS Lferr_1028 NC_011206.1 997348 998070 D KEGG: mfa:Mfla_1067 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 997348..998070 Acidithiobacillus ferrooxidans ATCC 53993 6876997 YP_002219478.1 CDS Lferr_1029 NC_011206.1 998137 998724 D TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: hmo:HM1_0242 orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 998137..998724 Acidithiobacillus ferrooxidans ATCC 53993 6876998 YP_002219479.1 CDS Lferr_1030 NC_011206.1 998777 1000081 D TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: dar:Daro_1719 trigger factor; trigger factor 998777..1000081 Acidithiobacillus ferrooxidans ATCC 53993 6876999 YP_002219480.1 CDS Lferr_1031 NC_011206.1 1000127 1000771 D KEGG: vha:VIBHAR_01417 ATP-dependent Clp protease, proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 1000127..1000771 Acidithiobacillus ferrooxidans ATCC 53993 6877000 YP_002219481.1 CDS Lferr_1032 NC_011206.1 1000790 1002061 D KEGG: aeh:Mlg_2287 ATP-dependent protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: AAA ATPase central domain protein; zinc finger C4 domain protein; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 1000790..1002061 Acidithiobacillus ferrooxidans ATCC 53993 6877001 YP_002219482.1 CDS Lferr_1033 NC_011206.1 1002150 1004585 D KEGG: aeh:Mlg_2286 Lon-A peptidase. Serine peptidase. MEROPS family S16; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1002150..1004585 Acidithiobacillus ferrooxidans ATCC 53993 6877002 YP_002219483.1 CDS Lferr_1034 NC_011206.1 1004593 1004799 D hypothetical protein 1004593..1004799 Acidithiobacillus ferrooxidans ATCC 53993 6877003 YP_002219484.1 CDS Lferr_1035 NC_011206.1 1004829 1005101 D PFAM: histone family protein DNA-binding protein; KEGG: mfa:Mfla_0016 histone-like DNA-binding protein; histone family protein DNA-binding protein 1004829..1005101 Acidithiobacillus ferrooxidans ATCC 53993 6877004 YP_002219485.1 CDS Lferr_1036 NC_011206.1 1005444 1007012 D KEGG: hha:Hhal_0599 hypothetical protein; hypothetical protein 1005444..1007012 Acidithiobacillus ferrooxidans ATCC 53993 6877007 YP_002219486.1 CDS Lferr_1037 NC_011206.1 1007024 1007626 R PFAM: phosphoesterase PA-phosphatase related; KEGG: har:HEAR1543 hypothetical protein; putative membrane protein; PA-phosphatase-like phosphoesterase complement(1007024..1007626) Acidithiobacillus ferrooxidans ATCC 53993 6877008 YP_002219487.1 CDS Lferr_1038 NC_011206.1 1007638 1008216 R KEGG: dar:Daro_1059 probable transmembrane protein; transmembrane protein complement(1007638..1008216) Acidithiobacillus ferrooxidans ATCC 53993 6877009 YP_002219488.1 CDS Lferr_1039 NC_011206.1 1008521 1009891 D KEGG: acr:Acry_3564 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 1008521..1009891 Acidithiobacillus ferrooxidans ATCC 53993 6877010 YP_002219489.1 CDS Lferr_1040 NC_011206.1 1009902 1010102 D KEGG: acr:Acry_3565 hypothetical protein; hypothetical protein 1009902..1010102 Acidithiobacillus ferrooxidans ATCC 53993 6877011 YP_002219490.1 CDS Lferr_1041 NC_011206.1 1010099 1011562 D PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_4666 drug resistance transporter, EmrB/QacA subfamily; major facilitator superfamily protein 1010099..1011562 Acidithiobacillus ferrooxidans ATCC 53993 6877012 YP_002219491.1 CDS Lferr_1042 NC_011206.1 1011563 1012228 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1011563..1012228) Acidithiobacillus ferrooxidans ATCC 53993 6877013 YP_002219492.1 CDS Lferr_1043 NC_011206.1 1012269 1014857 R KEGG: hha:Hhal_1468 metal dependent phosphohydrolase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region; UTP-GlnB uridylyltransferase, GlnD complement(1012269..1014857) Acidithiobacillus ferrooxidans ATCC 53993 6877014 YP_002219493.1 CDS Lferr_1044 NC_011206.1 1014860 1015669 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: noc:Noc_0807 peptidase M24A, methionine aminopeptidase, subfamily 1; methionine aminopeptidase complement(1014860..1015669) Acidithiobacillus ferrooxidans ATCC 53993 6877015 YP_002219494.1 CDS Lferr_1045 NC_011206.1 1015688 1016386 R PFAM: sugar fermentation stimulation protein; KEGG: gur:Gura_1121 sugar fermentation stimulation protein; sugar fermentation stimulation protein complement(1015688..1016386) Acidithiobacillus ferrooxidans ATCC 53993 6877016 YP_002219495.1 CDS Lferr_1046 NC_011206.1 1016397 1017287 R PFAM: glutamyl-tRNA synthetase class Ic; KEGG: aeh:Mlg_0676 glutamate--tRNA ligase; glutamate--tRNA ligase complement(1016397..1017287) Acidithiobacillus ferrooxidans ATCC 53993 6877017 YP_002219496.1 CDS Lferr_1047 NC_011206.1 1017349 1018371 D KEGG: xom:XOO_3629 thiamine monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 1017349..1018371 Acidithiobacillus ferrooxidans ATCC 53993 6877018 YP_002219497.1 CDS Lferr_1048 NC_011206.1 1018361 1018849 D PFAM: phosphatidylglycerophosphatase A; KEGG: pat:Patl_1317 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A 1018361..1018849 Acidithiobacillus ferrooxidans ATCC 53993 6877019 YP_002219498.1 CDS Lferr_1049 NC_011206.1 1018846 1019691 D PFAM: CinA domain protein; KEGG: eba:ebA3399 CinA-related protein (competence-inducible); CinA domain-containing protein 1018846..1019691 Acidithiobacillus ferrooxidans ATCC 53993 6877020 YP_002219499.1 CDS Lferr_1050 NC_011206.1 1019865 1020902 D KEGG: tbd:Tbd_2197 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 1019865..1020902 Acidithiobacillus ferrooxidans ATCC 53993 6877021 YP_002219500.1 CDS Lferr_1051 NC_011206.1 1020903 1021355 D PFAM: regulatory protein RecX; KEGG: hha:Hhal_1654 regulatory protein RecX; regulatory protein RecX 1020903..1021355 Acidithiobacillus ferrooxidans ATCC 53993 6877022 YP_002219501.1 CDS Lferr_1052 NC_011206.1 1021425 1024058 D KEGG: aeh:Mlg_1481 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase 1021425..1024058 Acidithiobacillus ferrooxidans ATCC 53993 6877023 YP_002219502.1 CDS Lferr_1053 NC_011206.1 1024082 1024660 R KEGG: acr:Acry_0524 hypothetical protein; hypothetical protein complement(1024082..1024660) Acidithiobacillus ferrooxidans ATCC 53993 6877024 YP_002219503.1 CDS Lferr_1054 NC_011206.1 1024657 1025175 R TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: lpn:lpg2466 hydrogenase expression/formation protein; hydrogenase maturation protease complement(1024657..1025175) Acidithiobacillus ferrooxidans ATCC 53993 6877025 YP_002219504.1 CDS Lferr_1055 NC_011206.1 1025172 1026470 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: tbd:Tbd_1263 hypothetical protein; nickel-dependent hydrogenase large subunit complement(1025172..1026470) Acidithiobacillus ferrooxidans ATCC 53993 6877026 YP_002219505.1 CDS Lferr_1056 NC_011206.1 1026454 1027251 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: lpc:LPC_2010 sulfhydrogenase delta subunit; NADH ubiquinone oxidoreductase 20 kDa subunit complement(1026454..1027251) Acidithiobacillus ferrooxidans ATCC 53993 6877027 YP_002219506.1 CDS Lferr_1057 NC_011206.1 1027256 1028086 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: tbd:Tbd_1261 hypothetical protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(1027256..1028086) Acidithiobacillus ferrooxidans ATCC 53993 6877028 YP_002219507.1 CDS Lferr_1058 NC_011206.1 1028079 1029185 R KEGG: tbd:Tbd_1260 hypothetical protein; hypothetical protein complement(1028079..1029185) Acidithiobacillus ferrooxidans ATCC 53993 6877029 YP_002219508.1 CDS Lferr_1059 NC_011206.1 1029262 1031238 R PFAM: Lytic transglycosylase catalytic; KEGG: dac:Daci_1262 lytic transglycosylase catalytic; Lytic transglycosylase complement(1029262..1031238) Acidithiobacillus ferrooxidans ATCC 53993 6877030 YP_002219509.1 CDS Lferr_1060 NC_011206.1 1031399 1034740 R KEGG: dar:Daro_3870 SNF2-related:helicase, C-terminal:SWIM Zn-finger; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase complement(1031399..1034740) Acidithiobacillus ferrooxidans ATCC 53993 6877031 YP_002219510.1 CDS Lferr_1061 NC_011206.1 1034917 1036371 D PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pde:Pden_4824 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 1034917..1036371 Acidithiobacillus ferrooxidans ATCC 53993 6877032 YP_002219511.1 CDS Lferr_1062 NC_011206.1 1036379 1036663 D hypothetical protein 1036379..1036663 Acidithiobacillus ferrooxidans ATCC 53993 6877033 YP_002219512.1 CDS Lferr_1063 NC_011206.1 1036676 1038268 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppw:PputW619_2750 ABC transporter related; ABC transporter-like protein complement(1036676..1038268) Acidithiobacillus ferrooxidans ATCC 53993 6877034 YP_002219513.1 CDS Lferr_1064 NC_011206.1 1038587 1040470 D PFAM: thiamine biosynthesis protein ThiC; KEGG: nmu:Nmul_A2285 thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 1038587..1040470 Acidithiobacillus ferrooxidans ATCC 53993 6877035 YP_002219514.1 CDS Lferr_1065 NC_011206.1 1040496 1040960 R KEGG: har:HEAR3006 hypothetical protein; hypothetical protein complement(1040496..1040960) Acidithiobacillus ferrooxidans ATCC 53993 6877036 YP_002219515.1 CDS Lferr_1066 NC_011206.1 1040965 1042212 R PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: dol:Dole_2404 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(1040965..1042212) Acidithiobacillus ferrooxidans ATCC 53993 6877037 YP_002219516.1 CDS Lferr_1067 NC_011206.1 1042242 1043648 R PFAM: Aldehyde Dehydrogenase_; KEGG: psa:PST_3999 probable aldehyde dehydrogenase; aldehyde dehydrogenase complement(1042242..1043648) Acidithiobacillus ferrooxidans ATCC 53993 6877038 YP_002219517.1 CDS Lferr_1068 NC_011206.1 1043822 1044025 R KEGG: acr:Acry_1633 hypothetical protein; hypothetical protein complement(1043822..1044025) Acidithiobacillus ferrooxidans ATCC 53993 6877039 YP_002219518.1 CDS Lferr_1069 NC_011206.1 1044038 1045171 R KEGG: acr:Acry_1634 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II complement(1044038..1045171) Acidithiobacillus ferrooxidans ATCC 53993 6877040 YP_002219519.1 CDS Lferr_1070 NC_011206.1 1045231 1046865 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: acr:Acry_1635 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(1045231..1046865) Acidithiobacillus ferrooxidans ATCC 53993 6877041 YP_002219520.1 CDS Lferr_1071 NC_011206.1 1046876 1047610 R PFAM: beta-lactamase domain protein; KEGG: noc:Noc_2007 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(1046876..1047610) Acidithiobacillus ferrooxidans ATCC 53993 6877042 YP_002219521.1 CDS Lferr_1072 NC_011206.1 1047916 1049271 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_0682 helix-turn-helix, fis-type; sigma-54 specific transcriptional regulator 1047916..1049271 Acidithiobacillus ferrooxidans ATCC 53993 6877043 YP_002219522.1 CDS Lferr_1073 NC_011206.1 1049255 1049911 D PFAM: phospholipase/Carboxylesterase; KEGG: cbd:COXBU7E912_2074 phospholipase/carboxylesterase family protein; phospholipase/carboxylesterase 1049255..1049911 Acidithiobacillus ferrooxidans ATCC 53993 6877044 YP_002219523.1 CDS Lferr_1074 NC_011206.1 1049908 1051326 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: aae:aq_736 dihydrolipoamide dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1049908..1051326) Acidithiobacillus ferrooxidans ATCC 53993 6877045 YP_002219524.1 CDS mdoD NC_011206.1 1051730 1053274 D involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1051730..1053274 Acidithiobacillus ferrooxidans ATCC 53993 6877046 YP_002219525.1 CDS Lferr_1076 NC_011206.1 1053274 1053777 D hypothetical protein 1053274..1053777 Acidithiobacillus ferrooxidans ATCC 53993 6877047 YP_002219526.1 CDS Lferr_1077 NC_011206.1 1053780 1055858 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1053780..1055858 Acidithiobacillus ferrooxidans ATCC 53993 6877048 YP_002219527.1 CDS Lferr_1078 NC_011206.1 1055877 1056893 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: noc:Noc_0390 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1055877..1056893) Acidithiobacillus ferrooxidans ATCC 53993 6877049 YP_002219528.1 CDS Lferr_1079 NC_011206.1 1057020 1057469 D PFAM: protein of unknown function DUF423; KEGG: noc:Noc_2079 protein of unknown function DUF423; hypothetical protein 1057020..1057469 Acidithiobacillus ferrooxidans ATCC 53993 6877050 YP_002219529.1 CDS Lferr_1080 NC_011206.1 1057450 1057857 D hypothetical protein 1057450..1057857 Acidithiobacillus ferrooxidans ATCC 53993 6877051 YP_002219530.1 CDS Lferr_1081 NC_011206.1 1057896 1059194 R KEGG: cya:CYA_2843 hypothetical protein; hypothetical protein complement(1057896..1059194) Acidithiobacillus ferrooxidans ATCC 53993 6877052 YP_002219531.1 CDS Lferr_1082 NC_011206.1 1059529 1062942 R KEGG: lpp:lpp0682 hypothetical protein; hypothetical protein complement(1059529..1062942) Acidithiobacillus ferrooxidans ATCC 53993 6877053 YP_002219532.1 CDS Lferr_1083 NC_011206.1 1062939 1063526 R KEGG: dar:Daro_3037 hypothetical protein; hypothetical protein complement(1062939..1063526) Acidithiobacillus ferrooxidans ATCC 53993 6877054 YP_002219533.1 CDS Lferr_1084 NC_011206.1 1063523 1064656 R KEGG: mms:mma_3357 type IV pilus assembly protein PilW; hypothetical protein complement(1063523..1064656) Acidithiobacillus ferrooxidans ATCC 53993 6877055 YP_002219534.1 CDS Lferr_1085 NC_011206.1 1064659 1065132 R KEGG: pca:Pcar_2158 hypothetical protein; hypothetical protein complement(1064659..1065132) Acidithiobacillus ferrooxidans ATCC 53993 6877056 YP_002219535.1 CDS Lferr_1086 NC_011206.1 1065144 1065710 R KEGG: dol:Dole_0486 pilin assembly protein; Tfp pilus assembly protein FimT-like protein complement(1065144..1065710) Acidithiobacillus ferrooxidans ATCC 53993 6877057 YP_002219536.1 CDS Lferr_1087 NC_011206.1 1065700 1066959 R PFAM: type II secretion system protein; KEGG: aeh:Mlg_2080 type II secretion system protein; type II secretion system protein complement(1065700..1066959) Acidithiobacillus ferrooxidans ATCC 53993 6877058 YP_002219537.1 CDS Lferr_1088 NC_011206.1 1067066 1068070 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(1067066..1068070) Acidithiobacillus ferrooxidans ATCC 53993 6877059 YP_002219538.1 CDS Lferr_1089 NC_011206.1 1068178 1068420 D PFAM: thiamineS protein; KEGG: hch:HCH_05869 molybdopterin converting factor, small subunit; sulfur transfer protein ThiS 1068178..1068420 Acidithiobacillus ferrooxidans ATCC 53993 6877060 YP_002219539.1 CDS Lferr_1090 NC_011206.1 1068423 1068917 D PFAM: molybdopterin biosynthesis MoaE protein; KEGG: rme:Rmet_1962 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis protein MoaE 1068423..1068917 Acidithiobacillus ferrooxidans ATCC 53993 6877061 YP_002219540.1 CDS Lferr_1091 NC_011206.1 1068924 1069409 D PFAM: protein of unknown function DUF520; KEGG: mgm:Mmc1_1670 protein of unknown function DUF520; hypothetical protein 1068924..1069409 Acidithiobacillus ferrooxidans ATCC 53993 6877062 YP_002219541.1 CDS Lferr_1092 NC_011206.1 1069427 1069756 D PFAM: Roadblock/LC7 family protein; KEGG: sco:SCO6795 hypothetical protein; Roadblock/LC7 family protein 1069427..1069756 Acidithiobacillus ferrooxidans ATCC 53993 6877063 YP_002219542.1 CDS Lferr_1093 NC_011206.1 1069753 1070880 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: eba:ebA6126 glycine cleavage system aminomethyltransferase T; glycine cleavage system T protein 1069753..1070880 Acidithiobacillus ferrooxidans ATCC 53993 6877064 YP_002219543.1 CDS Lferr_1094 NC_011206.1 1070877 1071260 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: hha:Hhal_1191 glycine cleavage system H protein; glycine cleavage system H protein 1070877..1071260 Acidithiobacillus ferrooxidans ATCC 53993 6877065 YP_002219544.1 CDS Lferr_1095 NC_011206.1 1071266 1072609 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 1071266..1072609 Acidithiobacillus ferrooxidans ATCC 53993 6877066 YP_002219545.1 CDS Lferr_1096 NC_011206.1 1072606 1074057 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1072606..1074057 Acidithiobacillus ferrooxidans ATCC 53993 6877067 YP_002219546.1 CDS Lferr_1097 NC_011206.1 1074062 1075750 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_01564 phospholipid-lipopolysaccharide ABC transporter; ABC transporter-like protein complement(1074062..1075750) Acidithiobacillus ferrooxidans ATCC 53993 6877068 YP_002219547.1 CDS Lferr_1098 NC_011206.1 1075747 1076070 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aeh:Mlg_1486 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1075747..1076070) Acidithiobacillus ferrooxidans ATCC 53993 6877069 YP_002219548.1 CDS Lferr_1099 NC_011206.1 1076357 1076959 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: nis:NIS_0392 peroxiredoxin, AhpC/Tsa family; alkyl hydroperoxide reductase 1076357..1076959 Acidithiobacillus ferrooxidans ATCC 53993 6877070 YP_002219549.1 CDS Lferr_1100 NC_011206.1 1077058 1077783 R hypothetical protein complement(1077058..1077783) Acidithiobacillus ferrooxidans ATCC 53993 6877071 YP_002219550.1 CDS Lferr_1101 NC_011206.1 1077887 1078747 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: bpt:Bpet2759 hypothetical protein; PHP domain-containing protein 1077887..1078747 Acidithiobacillus ferrooxidans ATCC 53993 6877072 YP_002219551.1 CDS Lferr_1102 NC_011206.1 1078847 1079887 D PFAM: protein of unknown function UPF0118; KEGG: rfr:Rfer_2147 protein of unknown function UPF0118; hypothetical protein 1078847..1079887 Acidithiobacillus ferrooxidans ATCC 53993 6877073 YP_002219552.1 CDS Lferr_1103 NC_011206.1 1079993 1080415 D KEGG: acr:Acry_0846 hypothetical protein; hypothetical protein 1079993..1080415 Acidithiobacillus ferrooxidans ATCC 53993 6877074 YP_002219553.1 CDS Lferr_1104 NC_011206.1 1080469 1080936 D hypothetical protein 1080469..1080936 Acidithiobacillus ferrooxidans ATCC 53993 6877075 YP_002219554.1 CDS Lferr_1105 NC_011206.1 1080929 1081696 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: slo:Shew_3288 23S rRNA (guanosine-2'-O-)-methyltransferase; TrmH family RNA methyltransferase 1080929..1081696 Acidithiobacillus ferrooxidans ATCC 53993 6877076 YP_002219555.1 CDS Lferr_1106 NC_011206.1 1081721 1082494 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: eba:ebA5421 Mg-dependent DNase; TatD family hydrolase 1081721..1082494 Acidithiobacillus ferrooxidans ATCC 53993 6877077 YP_002219556.1 CDS Lferr_1107 NC_011206.1 1082491 1083249 D PFAM: beta-lactamase domain protein; KEGG: cvi:CV_3718 probable hydrolase protein; beta-lactamase domain-containing protein 1082491..1083249 Acidithiobacillus ferrooxidans ATCC 53993 6877078 YP_002219557.1 CDS Lferr_1108 NC_011206.1 1083551 1084687 D PFAM: domain of unknown function DUF1745; KEGG: tbd:Tbd_0889 hypothetical protein; hypothetical protein 1083551..1084687 Acidithiobacillus ferrooxidans ATCC 53993 6877080 YP_002219558.1 CDS Lferr_1109 NC_011206.1 1084766 1086523 D KEGG: acr:Acry_1637 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydD 1084766..1086523 Acidithiobacillus ferrooxidans ATCC 53993 6877081 YP_002219559.1 CDS Lferr_1110 NC_011206.1 1086516 1088273 D KEGG: acr:Acry_1636 beta tubulin, autoregulation binding site; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydC 1086516..1088273 Acidithiobacillus ferrooxidans ATCC 53993 6877082 YP_002219560.1 CDS Lferr_1111 NC_011206.1 1088270 1088617 R hypothetical protein complement(1088270..1088617) Acidithiobacillus ferrooxidans ATCC 53993 6877083 YP_002219561.1 CDS Lferr_1112 NC_011206.1 1088621 1089586 R TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: eba:ebA5412 putative glycine cleavage T-protein (Aminomethyl transferase); folate-binding protein YgfZ complement(1088621..1089586) Acidithiobacillus ferrooxidans ATCC 53993 6877084 YP_002219562.1 CDS Lferr_1113 NC_011206.1 1089603 1090100 D hypothetical protein 1089603..1090100 Acidithiobacillus ferrooxidans ATCC 53993 6877085 YP_002219563.1 CDS Lferr_1114 NC_011206.1 1090045 1091634 R KEGG: eba:ebA5461 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; L-aspartate oxidase complement(1090045..1091634) Acidithiobacillus ferrooxidans ATCC 53993 6877086 YP_002219564.1 CDS Lferr_1115 NC_011206.1 1091751 1092377 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: slo:Shew_1048 RNA polymerase sigma factor RpoE; ECF subfamily RNA polymerase sigma-24 subunit 1091751..1092377 Acidithiobacillus ferrooxidans ATCC 53993 6877087 YP_002219565.1 CDS Lferr_1116 NC_011206.1 1092374 1093036 D KEGG: tbd:Tbd_2094 hypothetical protein; hypothetical protein 1092374..1093036 Acidithiobacillus ferrooxidans ATCC 53993 6877088 YP_002219566.1 CDS Lferr_1117 NC_011206.1 1093170 1094645 D KEGG: psa:PST_1227 serine protease MucD precursor; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1093170..1094645 Acidithiobacillus ferrooxidans ATCC 53993 6877089 YP_002219567.1 CDS Lferr_1118 NC_011206.1 1094751 1096553 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1094751..1096553 Acidithiobacillus ferrooxidans ATCC 53993 6877090 YP_002219568.1 CDS Lferr_1119 NC_011206.1 1096620 1097411 D KEGG: mca:MCA1465 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1096620..1097411 Acidithiobacillus ferrooxidans ATCC 53993 6877091 YP_002219569.1 CDS Lferr_1120 NC_011206.1 1097494 1097928 D KEGG: tbd:Tbd_2087 possible transmembrane protein; hypothetical protein 1097494..1097928 Acidithiobacillus ferrooxidans ATCC 53993 6877092 YP_002219570.1 CDS Lferr_1121 NC_011206.1 1097991 1098671 D PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: plu:plu3340 ribonuclease III; Ribonuclease III 1097991..1098671 Acidithiobacillus ferrooxidans ATCC 53993 6877093 YP_002219571.1 CDS Lferr_1122 NC_011206.1 1098664 1099578 D TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: aeh:Mlg_1348 GTP-binding protein Era; GTP-binding protein Era 1098664..1099578 Acidithiobacillus ferrooxidans ATCC 53993 6877094 YP_002219572.1 CDS Lferr_1123 NC_011206.1 1099568 1100335 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: asu:Asuc_0193 DNA repair protein RecO; DNA repair protein RecO 1099568..1100335 Acidithiobacillus ferrooxidans ATCC 53993 6877095 YP_002219573.1 CDS Lferr_1124 NC_011206.1 1100332 1101057 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1100332..1101057 Acidithiobacillus ferrooxidans ATCC 53993 6877096 YP_002219574.1 CDS Lferr_1125 NC_011206.1 1101054 1101443 D KEGG: aeh:Mlg_1351 holo-acyl-carrier-protein synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-(acyl-carrier-protein) synthase 1101054..1101443 Acidithiobacillus ferrooxidans ATCC 53993 6877097 YP_002219575.1 CDS Lferr_1127 NC_011206.1 1102156 1102470 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(1102156..1102470) Acidithiobacillus ferrooxidans ATCC 53993 6877099 YP_002219576.1 CDS Lferr_1128 NC_011206.1 1102592 1103911 R KEGG: sma:SAV256 transposase; hypothetical protein complement(1102592..1103911) Acidithiobacillus ferrooxidans ATCC 53993 6877100 YP_002219577.1 CDS Lferr_1129 NC_011206.1 1104826 1105776 D TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: dar:Daro_1285 RfaE bifunctional protein, domain I; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 1104826..1105776 Acidithiobacillus ferrooxidans ATCC 53993 6877101 YP_002219578.1 CDS Lferr_1130 NC_011206.1 1105778 1106548 D PFAM: PP-loop domain protein; KEGG: tbd:Tbd_2508 putative cell cycle control ATPase; PP-loop domain-containing protein 1105778..1106548 Acidithiobacillus ferrooxidans ATCC 53993 6877102 YP_002219579.1 CDS Lferr_1131 NC_011206.1 1106541 1107383 D PFAM: Hsp33 protein; KEGG: pmy:Pmen_0367 HSP33-like chaperonin; Hsp33 protein 1106541..1107383 Acidithiobacillus ferrooxidans ATCC 53993 6877103 YP_002219580.1 CDS Lferr_1132 NC_011206.1 1108101 1108607 R KEGG: psa:PST_3459 hypothetical protein; hypothetical protein complement(1108101..1108607) Acidithiobacillus ferrooxidans ATCC 53993 6877105 YP_002219581.1 CDS Lferr_1133 NC_011206.1 1108604 1108933 R SohA; PrlF; involved in protein secretion; when overproduced or mutated, it induces growth defect and increased export of a reporter protein; a PrlF mutation induces the activity of the Lon protease, and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation; regulator PrlF complement(1108604..1108933) Acidithiobacillus ferrooxidans ATCC 53993 6877106 YP_002219582.1 CDS Lferr_1134 NC_011206.1 1109220 1109363 D hypothetical protein 1109220..1109363 Acidithiobacillus ferrooxidans ATCC 53993 6877107 YP_002219583.1 CDS Lferr_1135 NC_011206.1 1109390 1109656 R KEGG: reh:H16_A0004 type I restriction-modification system methylation subunit; type I restriction-modification system methylation subunit complement(1109390..1109656) Acidithiobacillus ferrooxidans ATCC 53993 6877108 YP_002219584.1 CDS Lferr_1136 NC_011206.1 1110001 1110495 R PFAM: GCN5-related N-acetyltransferase; KEGG: eba:ebA2001 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1110001..1110495) Acidithiobacillus ferrooxidans ATCC 53993 6877109 YP_002219585.1 CDS Lferr_1137 NC_011206.1 1110492 1110764 R PFAM: Protein of unknown function DUF1778; KEGG: eba:ebB58 hypothetical protein; hypothetical protein complement(1110492..1110764) Acidithiobacillus ferrooxidans ATCC 53993 6877110 YP_002219586.1 CDS Lferr_1138 NC_011206.1 1110845 1111057 R KEGG: neu:NE2506 hypothetical protein; hypothetical protein complement(1110845..1111057) Acidithiobacillus ferrooxidans ATCC 53993 6877111 YP_002219587.1 CDS Lferr_1140 NC_011206.1 1111841 1112662 R PFAM: metallophosphoesterase; KEGG: mpt:Mpe_A3012 hypothetical protein; metallophosphoesterase complement(1111841..1112662) Acidithiobacillus ferrooxidans ATCC 53993 6877113 YP_002219588.1 CDS Lferr_1142 NC_011206.1 1113343 1114479 D PFAM: glycosyl transferase group 1; KEGG: eba:ebA6942 glycosyl transferase; group 1 glycosyl transferase 1113343..1114479 Acidithiobacillus ferrooxidans ATCC 53993 6877115 YP_002219589.1 CDS Lferr_1143 NC_011206.1 1114513 1115727 D PFAM: glycosyl transferase group 1; KEGG: azo:azo0965 glycosyltransferase; group 1 glycosyl transferase 1114513..1115727 Acidithiobacillus ferrooxidans ATCC 53993 6877116 YP_002219590.1 CDS Lferr_1145 NC_011206.1 1116456 1117904 D KEGG: bte:BTH_II1778 cytochrome c; cytochrome c 1116456..1117904 Acidithiobacillus ferrooxidans ATCC 53993 6877118 YP_002219591.1 CDS Lferr_1146 NC_011206.1 1117919 1118560 D KEGG: bte:BTH_II1779 cytochrome c family protein; cytochrome c family protein 1117919..1118560 Acidithiobacillus ferrooxidans ATCC 53993 6877119 YP_002219592.1 CDS Lferr_1147 NC_011206.1 1118634 1119602 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nar:Saro_3052 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(1118634..1119602) Acidithiobacillus ferrooxidans ATCC 53993 6877120 YP_002219593.1 CDS Lferr_1148 NC_011206.1 1119706 1119942 D PFAM: regulatory protein MerR; KEGG: dac:Daci_0478 transcriptional regulator, MerR family; merR family transcriptional regulator 1119706..1119942 Acidithiobacillus ferrooxidans ATCC 53993 6877121 YP_002219594.1 CDS Lferr_1149 NC_011206.1 1120018 1120560 D hypothetical protein 1120018..1120560 Acidithiobacillus ferrooxidans ATCC 53993 6877122 YP_002219595.1 CDS Lferr_1150 NC_011206.1 1120695 1121951 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bxe:Bxe_A0648 putative ATP-dependent RNA helicase 1; DEAD/DEAH box helicase 1120695..1121951 Acidithiobacillus ferrooxidans ATCC 53993 6877123 YP_002219596.1 CDS Lferr_1151 NC_011206.1 1122071 1122802 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_0216 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 1122071..1122802 Acidithiobacillus ferrooxidans ATCC 53993 6877124 YP_002219597.1 CDS Lferr_1152 NC_011206.1 1122864 1124192 D KEGG: pmy:Pmen_4407 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 1122864..1124192 Acidithiobacillus ferrooxidans ATCC 53993 6877125 YP_002219598.1 CDS Lferr_1153 NC_011206.1 1124262 1125281 D TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: xac:XAC1578 phosphate binding protein; phosphate ABC transporter substrate-binding protein 1124262..1125281 Acidithiobacillus ferrooxidans ATCC 53993 6877126 YP_002219599.1 CDS Lferr_1154 NC_011206.1 1125290 1126315 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0937 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 1125290..1126315 Acidithiobacillus ferrooxidans ATCC 53993 6877127 YP_002219600.1 CDS Lferr_1155 NC_011206.1 1126312 1127166 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0936 ABC-type phosphate transport system, permease component; phosphate ABC transporter permease 1126312..1127166 Acidithiobacillus ferrooxidans ATCC 53993 6877128 YP_002219601.1 CDS Lferr_1156 NC_011206.1 1127166 1127933 D KEGG: par:Psyc_1929 ABC phosphate transporter, ATPase subunit PstB; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 1127166..1127933 Acidithiobacillus ferrooxidans ATCC 53993 6877129 YP_002219602.1 CDS Lferr_1157 NC_011206.1 1127945 1128658 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: tbd:Tbd_0025 phosphate uptake regulator PhoU; phosphate uptake regulator PhoU 1127945..1128658 Acidithiobacillus ferrooxidans ATCC 53993 6877130 YP_002219603.1 CDS Lferr_1158 NC_011206.1 1128661 1130172 D PFAM: Ppx/GppA phosphatase; KEGG: pfl:PFL_5983 exopolyphosphatase; ppx/GppA phosphatase 1128661..1130172 Acidithiobacillus ferrooxidans ATCC 53993 6877131 YP_002219604.1 CDS Lferr_1159 NC_011206.1 1130426 1131016 D KEGG: pap:PSPA7_5989 hypothetical protein; hypothetical protein 1130426..1131016 Acidithiobacillus ferrooxidans ATCC 53993 6877132 YP_002219605.1 CDS Lferr_1160 NC_011206.1 1131221 1131973 D PFAM: ribosomal protein S2; KEGG: mfa:Mfla_1530 ribosomal protein S2; 30S ribosomal protein S2 1131221..1131973 Acidithiobacillus ferrooxidans ATCC 53993 6877133 YP_002219606.1 CDS tsf NC_011206.1 1132001 1132879 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1132001..1132879 Acidithiobacillus ferrooxidans ATCC 53993 6877134 YP_002219607.1 CDS Lferr_1162 NC_011206.1 1132880 1133605 D TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: mfa:Mfla_1528 uridylate kinase; uridylate kinase 1132880..1133605 Acidithiobacillus ferrooxidans ATCC 53993 6877135 YP_002219608.1 CDS Lferr_1163 NC_011206.1 1133602 1134162 D PFAM: ribosome recycling factor; KEGG: lpp:lpp1676 ribosome recycling factor; ribosome recycling factor 1133602..1134162 Acidithiobacillus ferrooxidans ATCC 53993 6877136 YP_002219609.1 CDS Lferr_1164 NC_011206.1 1134166 1134927 D KEGG: mca:MCA0571 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1134166..1134927 Acidithiobacillus ferrooxidans ATCC 53993 6877137 YP_002219610.1 CDS Lferr_1165 NC_011206.1 1134909 1135724 D PFAM: phosphatidate cytidylyltransferase; KEGG: pst:PSPTO_1539 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1134909..1135724 Acidithiobacillus ferrooxidans ATCC 53993 6877138 YP_002219611.1 CDS Lferr_1166 NC_011206.1 1135721 1136896 D KEGG: rso:RSc1410 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1135721..1136896 Acidithiobacillus ferrooxidans ATCC 53993 6877139 YP_002219612.1 CDS Lferr_1167 NC_011206.1 1136912 1138270 D KEGG: azo:azo1902 conserved hypothetical membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease 1136912..1138270 Acidithiobacillus ferrooxidans ATCC 53993 6877140 YP_002219613.1 CDS Lferr_1168 NC_011206.1 1138267 1140612 D TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: mfa:Mfla_1522 surface antigen (D15); outer membrane protein assembly complex, YaeT protein 1138267..1140612 Acidithiobacillus ferrooxidans ATCC 53993 6877141 YP_002219614.1 CDS Lferr_1169 NC_011206.1 1140630 1141166 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: afw:Anae109_1121 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 1140630..1141166 Acidithiobacillus ferrooxidans ATCC 53993 6877142 YP_002219615.1 CDS Lferr_1170 NC_011206.1 1141168 1142229 D TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: bmu:Bmul_1267 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1141168..1142229 Acidithiobacillus ferrooxidans ATCC 53993 6877143 YP_002219616.1 CDS Lferr_1171 NC_011206.1 1142222 1142668 D TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: tbd:Tbd_0796 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; beta-hydroxyacyl-(ACP) dehydratase FabZ 1142222..1142668 Acidithiobacillus ferrooxidans ATCC 53993 6877144 YP_002219617.1 CDS Lferr_1172 NC_011206.1 1142665 1143447 D TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: aeh:Mlg_1852 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase 1142665..1143447 Acidithiobacillus ferrooxidans ATCC 53993 6877145 YP_002219618.1 CDS Lferr_1173 NC_011206.1 1143444 1144385 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: noc:Noc_1755 oxidoreductase; oxidoreductase domain-containing protein 1143444..1144385 Acidithiobacillus ferrooxidans ATCC 53993 6877146 YP_002219619.1 CDS Lferr_1174 NC_011206.1 1144431 1145540 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pca:Pcar_1257 predicted pyridoxal phosphate-dependent enzyme; DegT/DnrJ/EryC1/StrS aminotransferase 1144431..1145540 Acidithiobacillus ferrooxidans ATCC 53993 6877147 YP_002219620.1 CDS Lferr_1175 NC_011206.1 1145545 1146672 D KEGG: aeh:Mlg_1851 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 1145545..1146672 Acidithiobacillus ferrooxidans ATCC 53993 6877148 YP_002219621.1 CDS Lferr_1176 NC_011206.1 1146686 1147276 D PFAM: ribonuclease HII/HIII; KEGG: tbd:Tbd_0799 ribonuclease H; ribonuclease H 1146686..1147276 Acidithiobacillus ferrooxidans ATCC 53993 6877149 YP_002219622.1 CDS Lferr_1177 NC_011206.1 1147273 1150776 D KEGG: hch:HCH_01861 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1147273..1150776 Acidithiobacillus ferrooxidans ATCC 53993 6877150 YP_002219623.1 CDS Lferr_1178 NC_011206.1 1150811 1151761 D KEGG: tbd:Tbd_0588 acetyl-CoA carboxylase, alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 1150811..1151761 Acidithiobacillus ferrooxidans ATCC 53993 6877151 YP_002219624.1 CDS Lferr_1179 NC_011206.1 1151739 1153133 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: phosphoadenosine phosphosulfate reductase; PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: mca:MCA1805 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase 1151739..1153133 Acidithiobacillus ferrooxidans ATCC 53993 6877152 YP_002219625.1 CDS Lferr_1180 NC_011206.1 1153097 1154428 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(1153097..1154428) Acidithiobacillus ferrooxidans ATCC 53993 6877153 YP_002219626.1 CDS Lferr_1181 NC_011206.1 1154433 1154897 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: mca:MCA0517 DnaK suppressor protein; TraR/DksA family transcriptional regulator complement(1154433..1154897) Acidithiobacillus ferrooxidans ATCC 53993 6877154 YP_002219627.1 CDS Lferr_1182 NC_011206.1 1155064 1155828 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gvi:glr3684 probable hydrolase, CbbY protein homolog; HAD-superfamily hydrolase 1155064..1155828 Acidithiobacillus ferrooxidans ATCC 53993 6877155 YP_002219628.1 CDS Lferr_1183 NC_011206.1 1155964 1156440 R PFAM: ferric-uptake regulator; KEGG: reh:H16_A0196 transcriptional regulator, Fur-family; Fur family ferric uptake regulator complement(1155964..1156440) Acidithiobacillus ferrooxidans ATCC 53993 6877156 YP_002219629.1 CDS Lferr_1184 NC_011206.1 1156558 1157037 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mca:MCA0664 antioxidant, AhpC/Tsa family; alkyl hydroperoxide reductase 1156558..1157037 Acidithiobacillus ferrooxidans ATCC 53993 6877157 YP_002219630.1 CDS Lferr_1185 NC_011206.1 1157034 1158443 D PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: noc:Noc_1210 PhoH-like protein; PhoH family protein 1157034..1158443 Acidithiobacillus ferrooxidans ATCC 53993 6877158 YP_002219631.1 CDS Lferr_1186 NC_011206.1 1158508 1160421 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1158508..1160421 Acidithiobacillus ferrooxidans ATCC 53993 6877159 YP_002219632.1 CDS Lferr_1187 NC_011206.1 1160386 1160814 R KEGG: pna:Pnap_1855 hypothetical protein; hypothetical protein complement(1160386..1160814) Acidithiobacillus ferrooxidans ATCC 53993 6877160 YP_002219633.1 CDS Lferr_1188 NC_011206.1 1160849 1161532 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mca:MCA0263 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase complement(1160849..1161532) Acidithiobacillus ferrooxidans ATCC 53993 6877161 YP_002219634.1 CDS Lferr_1189 NC_011206.1 1161529 1161804 R hypothetical protein complement(1161529..1161804) Acidithiobacillus ferrooxidans ATCC 53993 6877162 YP_002219635.1 CDS Lferr_1190 NC_011206.1 1161801 1162421 R PFAM: Glutathione S-transferase domain; KEGG: mca:MCA1303 glutathione S-transferase; glutathione S-transferase domain complement(1161801..1162421) Acidithiobacillus ferrooxidans ATCC 53993 6877163 YP_002219636.1 CDS Lferr_1191 NC_011206.1 1162421 1162774 R KEGG: azo:azo0637 hypothetical protein; hypothetical protein complement(1162421..1162774) Acidithiobacillus ferrooxidans ATCC 53993 6877164 YP_002219637.1 CDS Lferr_1192 NC_011206.1 1162791 1163285 R KEGG: mca:MCA0257 hypothetical protein; hypothetical protein complement(1162791..1163285) Acidithiobacillus ferrooxidans ATCC 53993 6877165 YP_002219638.1 CDS Lferr_1193 NC_011206.1 1163304 1163591 R KEGG: pna:Pnap_2316 putative ferredoxin like protein; FixX; ferredoxin-like protein FixX complement(1163304..1163591) Acidithiobacillus ferrooxidans ATCC 53993 6877166 YP_002219639.1 CDS Lferr_1194 NC_011206.1 1163588 1164886 R PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: bvi:Bcep1808_5982 FAD dependent oxidoreductase; electron-transferring-flavoprotein dehydrogenase complement(1163588..1164886) Acidithiobacillus ferrooxidans ATCC 53993 6877167 YP_002219640.1 CDS Lferr_1195 NC_011206.1 1164903 1165997 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: rru:Rru_A2266 electron transfer flavoprotein; electron transfer flavoprotein subunit alpha/beta complement(1164903..1165997) Acidithiobacillus ferrooxidans ATCC 53993 6877168 YP_002219641.1 CDS Lferr_1196 NC_011206.1 1166017 1166859 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: bxe:Bxe_B1436 electron transfer flavoprotein, fix A (beta subunit); electron transfer flavoprotein subunit alpha/beta complement(1166017..1166859) Acidithiobacillus ferrooxidans ATCC 53993 6877169 YP_002219642.1 CDS Lferr_1197 NC_011206.1 1167364 1167975 D PFAM: globin; KEGG: abu:Abu_1553 protozoan/cyanobacterial globin-like protein; globin 1167364..1167975 Acidithiobacillus ferrooxidans ATCC 53993 6877170 YP_002219643.1 CDS Lferr_1198 NC_011206.1 1167986 1170250 D PFAM: TonB-dependent receptor; KEGG: azo:azo3844 putative TonB-dependent receptor; TonB-dependent receptor 1167986..1170250 Acidithiobacillus ferrooxidans ATCC 53993 6877171 YP_002219644.1 CDS Lferr_1199 NC_011206.1 1170344 1171540 D KEGG: azo:azo3844 putative TonB-dependent receptor; hypothetical protein 1170344..1171540 Acidithiobacillus ferrooxidans ATCC 53993 6877172 YP_002219645.1 CDS Lferr_1200 NC_011206.1 1171553 1172206 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: acr:Acry_1460 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1171553..1172206 Acidithiobacillus ferrooxidans ATCC 53993 6877173 YP_002219646.1 CDS Lferr_1201 NC_011206.1 1172208 1172603 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: acr:Acry_1461 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1172208..1172603 Acidithiobacillus ferrooxidans ATCC 53993 6877174 YP_002219647.1 CDS Lferr_1202 NC_011206.1 1172600 1173334 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: psb:Psyr_4480 TonB, C-terminal; TonB family protein 1172600..1173334 Acidithiobacillus ferrooxidans ATCC 53993 6877175 YP_002219648.1 CDS Lferr_1203 NC_011206.1 1173347 1173526 D hypothetical protein 1173347..1173526 Acidithiobacillus ferrooxidans ATCC 53993 6877176 YP_002219649.1 CDS Lferr_1204 NC_011206.1 1173511 1174569 D PFAM: periplasmic binding protein; KEGG: sfu:Sfum_3702 periplasmic binding protein; periplasmic-binding protein 1173511..1174569 Acidithiobacillus ferrooxidans ATCC 53993 6877177 YP_002219650.1 CDS Lferr_1205 NC_011206.1 1174566 1175549 D PFAM: transport system permease protein; KEGG: ppd:Ppro_1462 transport system permease protein; transport system permease 1174566..1175549 Acidithiobacillus ferrooxidans ATCC 53993 6877178 YP_002219651.1 CDS Lferr_1206 NC_011206.1 1175546 1176337 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nha:Nham_0955 ABC transporter related; ABC transporter-like protein 1175546..1176337 Acidithiobacillus ferrooxidans ATCC 53993 6877179 YP_002219652.1 CDS Lferr_1207 NC_011206.1 1176360 1177079 D PFAM: TonB-dependent receptor plug; KEGG: gdi:GDI1162 putative TonB-dependent receptor; TonB-dependent receptor plug 1176360..1177079 Acidithiobacillus ferrooxidans ATCC 53993 6877180 YP_002219653.1 CDS Lferr_1208 NC_011206.1 1177134 1178453 D KEGG: sma:SAV256 transposase; hypothetical protein 1177134..1178453 Acidithiobacillus ferrooxidans ATCC 53993 6877181 YP_002219654.1 CDS Lferr_1209 NC_011206.1 1178575 1178889 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 1178575..1178889 Acidithiobacillus ferrooxidans ATCC 53993 6877182 YP_002219655.1 CDS Lferr_1210 NC_011206.1 1179033 1180553 D PFAM: TonB-dependent receptor; KEGG: gox:GOX1075 TonB-dependent outer membrane receptor; TonB-dependent receptor 1179033..1180553 Acidithiobacillus ferrooxidans ATCC 53993 6877183 YP_002219656.1 CDS Lferr_1211 NC_011206.1 1180581 1181300 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSp0106 putative molybdate-binding periplasmic signal peptide protein; molybdenum ABC transporter substrate-binding protein 1180581..1181300 Acidithiobacillus ferrooxidans ATCC 53993 6877184 YP_002219657.1 CDS Lferr_1212 NC_011206.1 1181320 1182354 D PFAM: periplasmic binding protein; KEGG: pca:Pcar_0153 ABC-type Fe3+-hydroxamate transport system, periplasmic component; periplasmic-binding protein 1181320..1182354 Acidithiobacillus ferrooxidans ATCC 53993 6877185 YP_002219658.1 CDS Lferr_1213 NC_011206.1 1182393 1183376 D PFAM: transport system permease protein; ABC-3 protein; KEGG: nha:Nham_0954 transport system permease protein; transport system permease 1182393..1183376 Acidithiobacillus ferrooxidans ATCC 53993 6877186 YP_002219659.1 CDS Lferr_1214 NC_011206.1 1183438 1184658 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cte:CT1964 cation efflux family protein; cation diffusion facilitator family transporter complement(1183438..1184658) Acidithiobacillus ferrooxidans ATCC 53993 6877187 YP_002219660.1 CDS Lferr_1215 NC_011206.1 1184724 1186052 R PFAM: outer membrane porin; KEGG: acr:Acry_0114 hypothetical protein; outer membrane porin complement(1184724..1186052) Acidithiobacillus ferrooxidans ATCC 53993 6877188 YP_002219661.1 CDS Lferr_1216 NC_011206.1 1186218 1187141 R PFAM: extracellular solute-binding protein family 1; KEGG: pol:Bpro_2497 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein complement(1186218..1187141) Acidithiobacillus ferrooxidans ATCC 53993 6877189 YP_002219662.1 CDS Lferr_1217 NC_011206.1 1187350 1189047 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bra:BRADO1843 putative ATPase, AAA family; ATPase AAA 1187350..1189047 Acidithiobacillus ferrooxidans ATCC 53993 6877190 YP_002219663.1 CDS Lferr_1218 NC_011206.1 1189084 1189404 D hypothetical protein 1189084..1189404 Acidithiobacillus ferrooxidans ATCC 53993 6877191 YP_002219664.1 CDS Lferr_1219 NC_011206.1 1189542 1189772 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: rpe:RPE_4913 putative regulatory protein, FmdB family; FmdB family regulatory protein complement(1189542..1189772) Acidithiobacillus ferrooxidans ATCC 53993 6877192 YP_002219665.1 CDS Lferr_1220 NC_011206.1 1189842 1190624 R PFAM: Rhodanese domain protein; Ankyrin; KEGG: azc:AZC_3439 rhodanese-like protein; rhodanese domain-containing protein complement(1189842..1190624) Acidithiobacillus ferrooxidans ATCC 53993 6877193 YP_002219666.1 CDS Lferr_1221 NC_011206.1 1190621 1192276 R KEGG: bbt:BBta_2171 hypothetical protein; hypothetical protein complement(1190621..1192276) Acidithiobacillus ferrooxidans ATCC 53993 6877194 YP_002219667.1 CDS Lferr_1222 NC_011206.1 1192302 1192634 R PFAM: nitrogen fixation protein NifW; KEGG: azo:azo0548 nitrogen fixation protein NifW; nitrogen fixation protein NifW complement(1192302..1192634) Acidithiobacillus ferrooxidans ATCC 53993 6877195 YP_002219668.1 CDS Lferr_1223 NC_011206.1 1192670 1193446 R KEGG: psa:PST_1353 serine acetyltransferase (CysE-like); TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine O-acetyltransferase complement(1192670..1193446) Acidithiobacillus ferrooxidans ATCC 53993 6877196 YP_002219669.1 CDS Lferr_1224 NC_011206.1 1193462 1194622 R TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: mca:MCA0254 homocitrate synthase; homocitrate synthase complement(1193462..1194622) Acidithiobacillus ferrooxidans ATCC 53993 6877197 YP_002219670.1 CDS Lferr_1225 NC_011206.1 1194615 1195808 R TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: psa:PST_1351 nitrogenase metalloclusters biosynthesis protein NifS; cysteine desulfurase NifS complement(1194615..1195808) Acidithiobacillus ferrooxidans ATCC 53993 6877198 YP_002219671.1 CDS Lferr_1226 NC_011206.1 1195826 1196701 R TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: azo:azo0553 probable nitrogen fixation protein NifU; Fe-S cluster assembly protein NifU complement(1195826..1196701) Acidithiobacillus ferrooxidans ATCC 53993 6877199 YP_002219672.1 CDS Lferr_1227 NC_011206.1 1196706 1197074 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azo:azo0554 HesB/YadR/YfhF family protein; iron-sulfur cluster assembly accessory protein complement(1196706..1197074) Acidithiobacillus ferrooxidans ATCC 53993 6877200 YP_002219673.1 CDS Lferr_1228 NC_011206.1 1197332 1197925 R KEGG: pna:Pnap_2347 hypothetical protein; hypothetical protein complement(1197332..1197925) Acidithiobacillus ferrooxidans ATCC 53993 6877201 YP_002219674.1 CDS Lferr_1229 NC_011206.1 1197992 1198645 R PFAM: NifQ family protein; KEGG: mca:MCA0239 nitrogen fixation protein NifQ, putative; NifQ family protein complement(1197992..1198645) Acidithiobacillus ferrooxidans ATCC 53993 6877202 YP_002219675.1 CDS Lferr_1230 NC_011206.1 1198667 1198975 R TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ava:Ava_4259 4Fe-4S ferredoxin, iron-sulfur binding; ferredoxin III complement(1198667..1198975) Acidithiobacillus ferrooxidans ATCC 53993 6877203 YP_002219676.1 CDS Lferr_1231 NC_011206.1 1198980 1199243 R PFAM: protein of unknown function DUF683; KEGG: mag:amb3580 hypothetical 77 kDa protein in FixX 3'region; hypothetical protein complement(1198980..1199243) Acidithiobacillus ferrooxidans ATCC 53993 6877204 YP_002219677.1 CDS Lferr_1232 NC_011206.1 1199301 1199768 R TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: mca:MCA0236 hypothetical protein; nitrogen fixation protein complement(1199301..1199768) Acidithiobacillus ferrooxidans ATCC 53993 6877205 YP_002219678.1 CDS Lferr_1233 NC_011206.1 1199761 1200177 R TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: mca:MCA0235 nitrogenase molybdenum-iron protein NifX; nitrogen fixation protein NifX complement(1199761..1200177) Acidithiobacillus ferrooxidans ATCC 53993 6877206 YP_002219679.1 CDS Lferr_1234 NC_011206.1 1200230 1201591 R functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN complement(1200230..1201591) Acidithiobacillus ferrooxidans ATCC 53993 6877207 YP_002219680.1 CDS Lferr_1235 NC_011206.1 1201588 1202979 R functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE complement(1201588..1202979) Acidithiobacillus ferrooxidans ATCC 53993 6877208 YP_002219681.1 CDS Lferr_1236 NC_011206.1 1202998 1203342 R PFAM: ferredoxin; KEGG: rru:Rru_A1916 ferredoxin; ferredoxin complement(1202998..1203342) Acidithiobacillus ferrooxidans ATCC 53993 6877209 YP_002219682.1 CDS Lferr_1237 NC_011206.1 1203367 1203711 R PFAM: ferredoxin; KEGG: pna:Pnap_2342 ferredoxin; ferredoxin complement(1203367..1203711) Acidithiobacillus ferrooxidans ATCC 53993 6877210 YP_002219683.1 CDS Lferr_1238 NC_011206.1 1203773 1205332 R KEGG: azc:AZC_1039 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit beta complement(1203773..1205332) Acidithiobacillus ferrooxidans ATCC 53993 6877211 YP_002219684.1 CDS Lferr_1239 NC_011206.1 1205411 1206886 R KEGG: mca:MCA0230 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit alpha complement(1205411..1206886) Acidithiobacillus ferrooxidans ATCC 53993 6877212 YP_002219685.1 CDS nifH NC_011206.1 1206950 1207840 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase complement(1206950..1207840) Acidithiobacillus ferrooxidans ATCC 53993 6877213 YP_002219686.1 CDS Lferr_1241 NC_011206.1 1208299 1208685 D KEGG: mca:MCA0228 response regulator; response regulator receiver protein 1208299..1208685 Acidithiobacillus ferrooxidans ATCC 53993 6877214 YP_002219687.1 CDS Lferr_1242 NC_011206.1 1208704 1209531 D PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: rpe:RPE_0837 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase; NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase 1208704..1209531 Acidithiobacillus ferrooxidans ATCC 53993 6877215 YP_002219688.1 CDS Lferr_1243 NC_011206.1 1209541 1210929 D KEGG: mag:amb1576 ADP-ribosyl-[dinitrogen reductase] glycohydrolase; TIGRFAM: nitrogenase-associated protein; ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/Crystallin J1; arsenate reductase and related; ADP-ribosyl-(dinitrogen reductase) hydrolase 1209541..1210929 Acidithiobacillus ferrooxidans ATCC 53993 6877216 YP_002219689.1 CDS Lferr_1244 NC_011206.1 1210955 1212592 D KEGG: bvi:Bcep1808_5993 transcriptional regulator, NifA, fis family; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Fis family transcriptional regulator NifA 1210955..1212592 Acidithiobacillus ferrooxidans ATCC 53993 6877217 YP_002219690.1 CDS Lferr_1245 NC_011206.1 1212917 1214485 D TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: xau:Xaut_0111 nitrogenase cofactor biosynthesis protein NifB; nitrogenase cofactor biosynthesis protein NifB 1212917..1214485 Acidithiobacillus ferrooxidans ATCC 53993 6877218 YP_002219691.1 CDS Lferr_1246 NC_011206.1 1214536 1214754 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azc:AZC_3415 2(4Fe-4S) ferredoxin; 4Fe-4S ferredoxin 1214536..1214754 Acidithiobacillus ferrooxidans ATCC 53993 6877219 YP_002219692.1 CDS Lferr_1247 NC_011206.1 1214764 1215099 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: mca:MCA0206 HesB/YadR/YfhF family protein; iron-sulfur cluster assembly accessory protein 1214764..1215099 Acidithiobacillus ferrooxidans ATCC 53993 6877220 YP_002219693.1 CDS Lferr_1248 NC_011206.1 1215140 1215370 D hypothetical protein 1215140..1215370 Acidithiobacillus ferrooxidans ATCC 53993 6877221 YP_002219694.1 CDS Lferr_1249 NC_011206.1 1215367 1215876 D KEGG: rpb:RPB_0962 hypothetical protein; hypothetical protein 1215367..1215876 Acidithiobacillus ferrooxidans ATCC 53993 6877222 YP_002219695.1 CDS Lferr_1250 NC_011206.1 1215869 1216660 D PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: bbt:BBta_5900 hypothetical protein; LRV FeS4 cluster domain-containing protein 1215869..1216660 Acidithiobacillus ferrooxidans ATCC 53993 6877223 YP_002219696.1 CDS Lferr_1251 NC_011206.1 1216648 1216950 D PFAM: NifZ family protein; KEGG: mca:MCA0209 NifZ protein; NifZ family protein 1216648..1216950 Acidithiobacillus ferrooxidans ATCC 53993 6877224 YP_002219697.1 CDS Lferr_1252 NC_011206.1 1216947 1217201 D PFAM: NifZ family protein; KEGG: bbt:BBta_5898 hypothetical protein; NifZ family protein 1216947..1217201 Acidithiobacillus ferrooxidans ATCC 53993 6877225 YP_002219698.1 CDS Lferr_1253 NC_011206.1 1217198 1218379 D PFAM: aminotransferase class V; KEGG: dde:Dde_3079 cysteine desulfurase; class V aminotransferase 1217198..1218379 Acidithiobacillus ferrooxidans ATCC 53993 6877226 YP_002219699.1 CDS Lferr_1254 NC_011206.1 1218395 1218604 D TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: mca:MCA0213 hypothetical protein; nitrogen fixation protein FixT 1218395..1218604 Acidithiobacillus ferrooxidans ATCC 53993 6877227 YP_002219700.1 CDS Lferr_1255 NC_011206.1 1218609 1218881 D KEGG: xau:Xaut_0119 hypothetical protein; hypothetical protein 1218609..1218881 Acidithiobacillus ferrooxidans ATCC 53993 6877228 YP_002219701.1 CDS Lferr_1256 NC_011206.1 1218878 1220020 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: azc:AZC_3423 aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1218878..1220020 Acidithiobacillus ferrooxidans ATCC 53993 6877229 YP_002219702.1 CDS Lferr_1257 NC_011206.1 1220062 1220367 D PFAM: ferredoxin; KEGG: bvi:Bcep1808_6007 ferredoxin; ferredoxin 1220062..1220367 Acidithiobacillus ferrooxidans ATCC 53993 6877230 YP_002219703.1 CDS Lferr_1258 NC_011206.1 1220378 1220602 D KEGG: xau:Xaut_0122 hypothetical protein; hypothetical protein 1220378..1220602 Acidithiobacillus ferrooxidans ATCC 53993 6877231 YP_002219704.1 CDS Lferr_1259 NC_011206.1 1220615 1221442 D KEGG: mca:MCA0218 hypothetical protein; hypothetical protein 1220615..1221442 Acidithiobacillus ferrooxidans ATCC 53993 6877232 YP_002219705.1 CDS Lferr_1260 NC_011206.1 1221491 1222345 R TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: pvi:Cvib_1491 ModD protein; modD protein complement(1221491..1222345) Acidithiobacillus ferrooxidans ATCC 53993 6877233 YP_002219706.1 CDS Lferr_1261 NC_011206.1 1222469 1222675 R PFAM: TOBE domain protein; KEGG: rso:RSc1342 putative molybdopterin-binding protein; TOBE domain-containing protein complement(1222469..1222675) Acidithiobacillus ferrooxidans ATCC 53993 6877234 YP_002219707.1 CDS Lferr_1262 NC_011206.1 1222742 1224169 R PFAM: Aldehyde Dehydrogenase_; KEGG: ttj:TTHA0996 succinate-semialdehyde dehydrogenase; aldehyde dehydrogenase complement(1222742..1224169) Acidithiobacillus ferrooxidans ATCC 53993 6877235 YP_002219708.1 CDS Lferr_1263 NC_011206.1 1224371 1224760 D PFAM: globin; KEGG: cvi:CV_3691 probable oxygen-binding protein; globin 1224371..1224760 Acidithiobacillus ferrooxidans ATCC 53993 6877236 YP_002219709.1 CDS Lferr_1264 NC_011206.1 1224757 1226175 R PFAM: major facilitator superfamily MFS_1; KEGG: rca:Rcas_2592 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1224757..1226175) Acidithiobacillus ferrooxidans ATCC 53993 6877237 YP_002219710.1 CDS Lferr_1265 NC_011206.1 1226359 1226931 D KEGG: asa:ASA_3751 small-conductance mechanosensitive channel; small-conductance mechanosensitive channel 1226359..1226931 Acidithiobacillus ferrooxidans ATCC 53993 6877238 YP_002219711.1 CDS Lferr_1266 NC_011206.1 1226928 1227839 D PFAM: PfkB domain protein; KEGG: cyb:CYB_2162 kinase, PfkB family; PfkB domain-containing protein 1226928..1227839 Acidithiobacillus ferrooxidans ATCC 53993 6877239 YP_002219712.1 CDS Lferr_1267 NC_011206.1 1227832 1229976 D KEGG: neu:NE1213 glycosyl transferase group 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; sucrose-phosphate synthase; PFAM: glycosyl transferase group 1; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; sucrose-phosphate synthase 1227832..1229976 Acidithiobacillus ferrooxidans ATCC 53993 6877240 YP_002219713.1 CDS Lferr_1268 NC_011206.1 1229969 1232350 D PFAM: sucrose synthase; glycosyl transferase group 1; KEGG: neu:NE1214 sucrose synthase:glycosyl transferase group 1; Sucrose synthase 1229969..1232350 Acidithiobacillus ferrooxidans ATCC 53993 6877241 YP_002219714.1 CDS Lferr_1269 NC_011206.1 1232495 1233019 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: sus:Acid_4002 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(1232495..1233019) Acidithiobacillus ferrooxidans ATCC 53993 6877242 YP_002219715.1 CDS Lferr_1270 NC_011206.1 1233172 1233825 R PFAM: protein of unknown function DUF202; KEGG: aae:aq_913 hypothetical protein; hypothetical protein complement(1233172..1233825) Acidithiobacillus ferrooxidans ATCC 53993 6877243 YP_002219716.1 CDS Lferr_1271 NC_011206.1 1234079 1235074 R PFAM: integrase family protein; KEGG: pna:Pnap_2283 phage integrase family protein; integrase family protein complement(1234079..1235074) Acidithiobacillus ferrooxidans ATCC 53993 6877245 YP_002219717.1 CDS Lferr_1272 NC_011206.1 1235219 1235473 R hypothetical protein complement(1235219..1235473) Acidithiobacillus ferrooxidans ATCC 53993 6877246 YP_002219718.1 CDS Lferr_1273 NC_011206.1 1235670 1235897 R hypothetical protein complement(1235670..1235897) Acidithiobacillus ferrooxidans ATCC 53993 6877247 YP_002219719.1 CDS Lferr_1274 NC_011206.1 1236172 1236630 R PFAM: helix-turn-helix domain protein; KEGG: ecw:EcE24377A_2252 putative transcriptional regulator DicA; XRE family transcriptional regulator complement(1236172..1236630) Acidithiobacillus ferrooxidans ATCC 53993 6877248 YP_002219720.1 CDS Lferr_1275 NC_011206.1 1236681 1236812 R hypothetical protein complement(1236681..1236812) Acidithiobacillus ferrooxidans ATCC 53993 6877249 YP_002219721.1 CDS Lferr_1276 NC_011206.1 1237205 1238113 D KEGG: gbe:GbCGDNIH1_1591 hypothetical cytosolic protein; hypothetical protein 1237205..1238113 Acidithiobacillus ferrooxidans ATCC 53993 6877250 YP_002219722.1 CDS Lferr_1277 NC_011206.1 1238124 1238978 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bpl:BURPS1106A_1434 DNA replication protein DnaC, putative; IstB domain-containing ATP-binding protein 1238124..1238978 Acidithiobacillus ferrooxidans ATCC 53993 6877251 YP_002219723.1 CDS Lferr_1278 NC_011206.1 1238975 1240171 D KEGG: reh:H16_B1949 transcriptional regulator, GntR-family; hypothetical protein 1238975..1240171 Acidithiobacillus ferrooxidans ATCC 53993 6877252 YP_002219724.1 CDS Lferr_1279 NC_011206.1 1240168 1241058 D PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cau:Caur_0075 D12 class N6 adenine-specific DNA methyltransferase; D12 class N6 adenine-specific DNA methyltransferase 1240168..1241058 Acidithiobacillus ferrooxidans ATCC 53993 6877253 YP_002219725.1 CDS Lferr_1280 NC_011206.1 1241108 1241602 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: net:Neut_2461 single-strand binding protein; ssDNA-binding protein 1241108..1241602 Acidithiobacillus ferrooxidans ATCC 53993 6877254 YP_002219726.1 CDS Lferr_1281 NC_011206.1 1242618 1243787 D KEGG: pfa:MAL8P1.23 ubiquitin-protein ligase 1, putative; hypothetical protein 1242618..1243787 Acidithiobacillus ferrooxidans ATCC 53993 6877255 YP_002219727.1 CDS Lferr_1282 NC_011206.1 1244081 1244734 R hypothetical protein complement(1244081..1244734) Acidithiobacillus ferrooxidans ATCC 53993 6877256 YP_002219728.1 CDS Lferr_1283 NC_011206.1 1245108 1249373 R KEGG: oan:Oant_4333 hypothetical protein; hypothetical protein complement(1245108..1249373) Acidithiobacillus ferrooxidans ATCC 53993 6877257 YP_002219729.1 CDS Lferr_1284 NC_011206.1 1249566 1250759 R KEGG: vei:Veis_1752 YeeC-like protein; YeeC-like protein complement(1249566..1250759) Acidithiobacillus ferrooxidans ATCC 53993 6877258 YP_002219730.1 CDS Lferr_1285 NC_011206.1 1250752 1252863 R KEGG: vei:Veis_1751 YeeB-like protein; YeeB-like protein complement(1250752..1252863) Acidithiobacillus ferrooxidans ATCC 53993 6877259 YP_002219731.1 CDS Lferr_1286 NC_011206.1 1253051 1253710 R KEGG: rsq:Rsph17025_4318 hypothetical protein; transcriptional regulator complement(1253051..1253710) Acidithiobacillus ferrooxidans ATCC 53993 6877260 YP_002219732.1 CDS Lferr_1287 NC_011206.1 1253707 1256505 R KEGG: vei:Veis_1748 putative DNA methylase; DNA methylase complement(1253707..1256505) Acidithiobacillus ferrooxidans ATCC 53993 6877261 YP_002219733.1 CDS Lferr_1288 NC_011206.1 1256560 1256808 R KEGG: cch:Cag_0807 DNA-methyltransferase, type I restriction-modification enzyme subunit M; hypothetical protein complement(1256560..1256808) Acidithiobacillus ferrooxidans ATCC 53993 6877262 YP_002219734.1 CDS Lferr_1289 NC_011206.1 1256907 1257281 R PFAM: PilT protein domain protein; KEGG: gur:Gura_3863 PilT protein domain protein; PilT protein domain-containing protein complement(1256907..1257281) Acidithiobacillus ferrooxidans ATCC 53993 6877263 YP_002219735.1 CDS Lferr_1290 NC_011206.1 1257278 1257475 R KEGG: bur:Bcep18194_B0330 hypothetical protein; hypothetical protein complement(1257278..1257475) Acidithiobacillus ferrooxidans ATCC 53993 6877264 YP_002219736.1 CDS Lferr_1291 NC_011206.1 1257821 1257982 R hypothetical protein complement(1257821..1257982) Acidithiobacillus ferrooxidans ATCC 53993 6877265 YP_002219737.1 CDS Lferr_1292 NC_011206.1 1258332 1259006 D hypothetical protein 1258332..1259006 Acidithiobacillus ferrooxidans ATCC 53993 6877266 YP_002219738.1 CDS Lferr_1293 NC_011206.1 1259003 1259326 D PFAM: histone family protein DNA-binding protein; KEGG: mfa:Mfla_1997 integration host factor subunit alpha; histone family protein DNA-binding protein 1259003..1259326 Acidithiobacillus ferrooxidans ATCC 53993 6877267 YP_002219739.1 CDS Lferr_1294 NC_011206.1 1259393 1259668 D PFAM: histone family protein DNA-binding protein; KEGG: pdi:BDI_3602 DNA-binding protein HU-beta; histone family protein DNA-binding protein 1259393..1259668 Acidithiobacillus ferrooxidans ATCC 53993 6877268 YP_002219740.1 CDS Lferr_1295 NC_011206.1 1259680 1260033 D hypothetical protein 1259680..1260033 Acidithiobacillus ferrooxidans ATCC 53993 6877269 YP_002219741.1 CDS Lferr_1296 NC_011206.1 1260042 1260263 D PFAM: histone family protein DNA-binding protein; KEGG: prw:PsycPRwf_2314 histone family protein DNA-binding protein; histone family protein DNA-binding protein 1260042..1260263 Acidithiobacillus ferrooxidans ATCC 53993 6877270 YP_002219742.1 CDS Lferr_1299 NC_011206.1 1260987 1261256 R TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: swi:Swit_5118 addiction module antitoxin, RelB/DinJ family; RelB/DinJ family addiction module antitoxin complement(1260987..1261256) Acidithiobacillus ferrooxidans ATCC 53993 6877273 YP_002219743.1 CDS Lferr_1300 NC_011206.1 1261281 1262177 R KEGG: bch:Bcen2424_5789 hypothetical protein; hypothetical protein complement(1261281..1262177) Acidithiobacillus ferrooxidans ATCC 53993 6877274 YP_002219744.1 CDS Lferr_1301 NC_011206.1 1262439 1262930 D SMART: phospholipid/glycerol acyltransferase; KEGG: tel:tlr0042 probable acyltransferase; phospholipid/glycerol acyltransferase 1262439..1262930 Acidithiobacillus ferrooxidans ATCC 53993 6877275 YP_002219745.1 CDS Lferr_1302 NC_011206.1 1262943 1263542 D KEGG: vei:Veis_2845 hypothetical protein; hypothetical protein 1262943..1263542 Acidithiobacillus ferrooxidans ATCC 53993 6877276 YP_002219746.1 CDS Lferr_1303 NC_011206.1 1263535 1264503 D PFAM: Domain of unknown function DUF1814; KEGG: vei:Veis_2844 hypothetical protein; hypothetical protein 1263535..1264503 Acidithiobacillus ferrooxidans ATCC 53993 6877277 YP_002219747.1 CDS Lferr_1304 NC_011206.1 1264639 1269012 D PFAM: domain of unknown function DUF1738; KEGG: net:Neut_2602 hypothetical protein; hypothetical protein 1264639..1269012 Acidithiobacillus ferrooxidans ATCC 53993 6877278 YP_002219748.1 CDS Lferr_1305 NC_011206.1 1269073 1270257 D hypothetical protein 1269073..1270257 Acidithiobacillus ferrooxidans ATCC 53993 6877279 YP_002219749.1 CDS Lferr_1306 NC_011206.1 1270254 1270532 D hypothetical protein 1270254..1270532 Acidithiobacillus ferrooxidans ATCC 53993 6877280 YP_002219750.1 CDS Lferr_1308 NC_011206.1 1271835 1272344 D KEGG: tet:TTHERM_00079920 hypothetical protein PROSITE: GLN_RICH; hypothetical protein 1271835..1272344 Acidithiobacillus ferrooxidans ATCC 53993 6877282 YP_002219751.1 CDS Lferr_1309 NC_011206.1 1272816 1273517 D hypothetical protein 1272816..1273517 Acidithiobacillus ferrooxidans ATCC 53993 6877283 YP_002219752.1 CDS Lferr_1310 NC_011206.1 1273779 1274360 D KEGG: bch:Bcen2424_1258 hypothetical protein; hypothetical protein 1273779..1274360 Acidithiobacillus ferrooxidans ATCC 53993 6877284 YP_002219753.1 CDS Lferr_1311 NC_011206.1 1274556 1275146 R KEGG: pna:Pnap_4812 hypothetical protein; hypothetical protein complement(1274556..1275146) Acidithiobacillus ferrooxidans ATCC 53993 6877285 YP_002219754.1 CDS Lferr_1312 NC_011206.1 1275394 1275819 R KEGG: cph:Cpha266_0258 hypothetical protein; hypothetical protein complement(1275394..1275819) Acidithiobacillus ferrooxidans ATCC 53993 6877286 YP_002219755.1 CDS Lferr_1313 NC_011206.1 1276057 1276641 R hypothetical protein complement(1276057..1276641) Acidithiobacillus ferrooxidans ATCC 53993 6877287 YP_002219756.1 CDS Lferr_1314 NC_011206.1 1276745 1276987 R KEGG: gur:Gura_0787 CopG domain protein DNA-binding domain protein; CopG domain-containing DNA-binding domain-containing protein complement(1276745..1276987) Acidithiobacillus ferrooxidans ATCC 53993 6877288 YP_002219757.1 CDS Lferr_1315 NC_011206.1 1276984 1277265 R PFAM: protein of unknown function DUF497; KEGG: gur:Gura_1009 protein of unknown function DUF497; hypothetical protein complement(1276984..1277265) Acidithiobacillus ferrooxidans ATCC 53993 6877289 YP_002219758.1 CDS Lferr_1316 NC_011206.1 1277404 1277676 R hypothetical protein complement(1277404..1277676) Acidithiobacillus ferrooxidans ATCC 53993 6877290 YP_002219759.1 CDS Lferr_1317 NC_011206.1 1277741 1277914 R hypothetical protein complement(1277741..1277914) Acidithiobacillus ferrooxidans ATCC 53993 6877291 YP_002219760.1 CDS Lferr_1318 NC_011206.1 1278182 1278766 D KEGG: sil:SPO3110 TonB domain protein, putative; hypothetical protein 1278182..1278766 Acidithiobacillus ferrooxidans ATCC 53993 6877292 YP_002219761.1 CDS Lferr_1319 NC_011206.1 1278831 1279646 D KEGG: aau:AAur_0609 polysaccharide deacetylase family protein; hypothetical protein 1278831..1279646 Acidithiobacillus ferrooxidans ATCC 53993 6877293 YP_002219762.1 CDS Lferr_1320 NC_011206.1 1279646 1281196 D KEGG: bam:Bamb_1989 hypothetical protein; Type IV secretory pathway VirD2 pilin (relaxase)-like protein 1279646..1281196 Acidithiobacillus ferrooxidans ATCC 53993 6877294 YP_002219763.1 CDS Lferr_1321 NC_011206.1 1281213 1281374 D hypothetical protein 1281213..1281374 Acidithiobacillus ferrooxidans ATCC 53993 6877295 YP_002219764.1 CDS Lferr_1322 NC_011206.1 1282059 1282238 D KEGG: gur:Gura_2403 hypothetical protein; hypothetical protein 1282059..1282238 Acidithiobacillus ferrooxidans ATCC 53993 6877296 YP_002219765.1 CDS Lferr_1323 NC_011206.1 1282305 1283072 D hypothetical protein 1282305..1283072 Acidithiobacillus ferrooxidans ATCC 53993 6877297 YP_002219766.1 CDS Lferr_1325 NC_011206.1 1283489 1283683 R hypothetical protein complement(1283489..1283683) Acidithiobacillus ferrooxidans ATCC 53993 6877299 YP_002219767.1 CDS Lferr_1326 NC_011206.1 1283728 1285365 R PFAM: transposase IS66; KEGG: bte:BTH_I1449 TnpC protein; transposase IS66 complement(1283728..1285365) Acidithiobacillus ferrooxidans ATCC 53993 6877300 YP_002219768.1 CDS Lferr_1327 NC_011206.1 1285415 1285762 R PFAM: IS66 Orf2 family protein; KEGG: bte:BTH_I2736 TnpB protein; IS66 Orf2 family protein complement(1285415..1285762) Acidithiobacillus ferrooxidans ATCC 53993 6877301 YP_002219769.1 CDS Lferr_1328 NC_011206.1 1285753 1286085 R KEGG: eba:ebD46 hypothetical protein, possibly transposase fragment; transposase complement(1285753..1286085) Acidithiobacillus ferrooxidans ATCC 53993 6877302 YP_002219770.1 CDS Lferr_1329 NC_011206.1 1286193 1286336 D hypothetical protein 1286193..1286336 Acidithiobacillus ferrooxidans ATCC 53993 6877303 YP_002219771.1 CDS Lferr_1330 NC_011206.1 1286353 1286460 D hypothetical protein 1286353..1286460 Acidithiobacillus ferrooxidans ATCC 53993 6877304 YP_002219772.1 CDS Lferr_1331 NC_011206.1 1286768 1286914 D TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: eba:ebA5850 hypothetical protein; addiction module killer protein 1286768..1286914 Acidithiobacillus ferrooxidans ATCC 53993 6877305 YP_002219773.1 CDS Lferr_1332 NC_011206.1 1286918 1287217 D TIGRFAM: addiction module antidote protein; KEGG: pfo:Pfl_0420 predicted transcriptional regulator; transcriptional regulator 1286918..1287217 Acidithiobacillus ferrooxidans ATCC 53993 6877306 YP_002219774.1 CDS Lferr_1333 NC_011206.1 1287784 1288236 D hypothetical protein 1287784..1288236 Acidithiobacillus ferrooxidans ATCC 53993 6877307 YP_002219775.1 CDS Lferr_1334 NC_011206.1 1288233 1289201 D TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: net:Neut_2555 type II secretion system protein E; P-type conjugative transfer ATPase TrbB 1288233..1289201 Acidithiobacillus ferrooxidans ATCC 53993 6877308 YP_002219776.1 CDS Lferr_1335 NC_011206.1 1289250 1289630 D hypothetical protein 1289250..1289630 Acidithiobacillus ferrooxidans ATCC 53993 6877309 YP_002219777.1 CDS Lferr_1336 NC_011206.1 1289598 1290389 R hypothetical protein complement(1289598..1290389) Acidithiobacillus ferrooxidans ATCC 53993 6877310 YP_002219778.1 CDS Lferr_1337 NC_011206.1 1290594 1290980 D PFAM: Conjugal transfer protein TrbC; KEGG: bcs:BCAN_B0369 P-type conjugative transfer protein TrbL; conjugal transfer protein TrbC 1290594..1290980 Acidithiobacillus ferrooxidans ATCC 53993 6877311 YP_002219779.1 CDS Lferr_1338 NC_011206.1 1290984 1291361 D KEGG: pna:Pnap_2502 conjugal transfer TrbD family protein; hypothetical protein 1290984..1291361 Acidithiobacillus ferrooxidans ATCC 53993 6877312 YP_002219780.1 CDS Lferr_1339 NC_011206.1 1291361 1293883 D PFAM: CagE TrbE VirB component of type IV transporter system; SMART: AAA ATPase; KEGG: smd:Smed_5379 type IV secretion/conjugal transfer ATPase, VirB4 family; V transporter system protein CagE/TrbE/VirB 1291361..1293883 Acidithiobacillus ferrooxidans ATCC 53993 6877313 YP_002219781.1 CDS Lferr_1340 NC_011206.1 1293880 1294134 D hypothetical protein 1293880..1294134 Acidithiobacillus ferrooxidans ATCC 53993 6877314 YP_002219782.1 CDS Lferr_1341 NC_011206.1 1294217 1294957 D TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: bms:BRA0368 TrbJ protein; P-type conjugative transfer protein TrbJ 1294217..1294957 Acidithiobacillus ferrooxidans ATCC 53993 6877315 YP_002219783.1 CDS Lferr_1342 NC_011206.1 1294969 1295223 D hypothetical protein 1294969..1295223 Acidithiobacillus ferrooxidans ATCC 53993 6877316 YP_002219784.1 CDS Lferr_1343 NC_011206.1 1295239 1297008 D TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: aav:Aave_0395 TrbL/VirB6 plasmid conjugal transfer protein; P-type conjugative transfer protein TrbL 1295239..1297008 Acidithiobacillus ferrooxidans ATCC 53993 6877317 YP_002219785.1 CDS Lferr_1344 NC_011206.1 1297094 1297474 D hypothetical protein 1297094..1297474 Acidithiobacillus ferrooxidans ATCC 53993 6877318 YP_002219786.1 CDS Lferr_1345 NC_011206.1 1297648 1298115 R KEGG: reu:Reut_C5911 hypothetical protein; hypothetical protein complement(1297648..1298115) Acidithiobacillus ferrooxidans ATCC 53993 6877319 YP_002219787.1 CDS Lferr_1346 NC_011206.1 1298504 1299988 R KEGG: mca:MCA1467 serine protease, MucD; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; protease Do complement(1298504..1299988) Acidithiobacillus ferrooxidans ATCC 53993 6877320 YP_002219788.1 CDS Lferr_1347 NC_011206.1 1300488 1300934 R PFAM: heat shock protein Hsp20; KEGG: noc:Noc_1573 heat shock protein HSP20; heat shock protein Hsp20 complement(1300488..1300934) Acidithiobacillus ferrooxidans ATCC 53993 6877321 YP_002219789.1 CDS Lferr_1349 NC_011206.1 1302212 1303093 D PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mva:Mvan_5187 6-phosphogluconate dehydrogenase, NAD-binding; NAD-binding 6-phosphogluconate dehydrogenase 1302212..1303093 Acidithiobacillus ferrooxidans ATCC 53993 6877323 YP_002219790.1 CDS Lferr_1350 NC_011206.1 1303123 1305390 D KEGG: rso:RS02385 putative formate dehydrogenase oxidoreductase protein; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase molybdopterin subunit 1303123..1305390 Acidithiobacillus ferrooxidans ATCC 53993 6877324 YP_002219791.1 CDS Lferr_1351 NC_011206.1 1305380 1305649 D hypothetical protein 1305380..1305649 Acidithiobacillus ferrooxidans ATCC 53993 6877325 YP_002219792.1 CDS Lferr_1352 NC_011206.1 1305628 1306476 D TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: bbr:BB1320 formate dehydrogenase associated protein; formate dehydrogenase family accessory protein FdhD 1305628..1306476 Acidithiobacillus ferrooxidans ATCC 53993 6877326 YP_002219793.1 CDS Lferr_1353 NC_011206.1 1306485 1307324 R KEGG: bvi:Bcep1808_3204 helix-turn-helix, type 11 domain protein; helix-turn-helix, type 11 domain-containing protein complement(1306485..1307324) Acidithiobacillus ferrooxidans ATCC 53993 6877327 YP_002219794.1 CDS Lferr_1354 NC_011206.1 1307435 1308517 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_4089 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(1307435..1308517) Acidithiobacillus ferrooxidans ATCC 53993 6877328 YP_002219795.1 CDS Lferr_1355 NC_011206.1 1308522 1310195 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(1308522..1310195) Acidithiobacillus ferrooxidans ATCC 53993 6877329 YP_002219796.1 CDS Lferr_1356 NC_011206.1 1310566 1311234 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: tbd:Tbd_0079 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 1310566..1311234 Acidithiobacillus ferrooxidans ATCC 53993 6877330 YP_002219797.1 CDS Lferr_1357 NC_011206.1 1311500 1312528 R KEGG: tbd:Tbd_2013 hypothetical protein; hypothetical protein complement(1311500..1312528) Acidithiobacillus ferrooxidans ATCC 53993 6877331 YP_002219798.1 CDS Lferr_1358 NC_011206.1 1312655 1315132 R KEGG: rca:Rcas_0567 hypothetical protein; hypothetical protein complement(1312655..1315132) Acidithiobacillus ferrooxidans ATCC 53993 6877332 YP_002219799.1 CDS Lferr_1359 NC_011206.1 1315135 1316775 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bbt:BBta_2651 putative NADH dehydrogenase; NADH-ubiquinone/plastoquinone (complex I) oxidoreductase complement(1315135..1316775) Acidithiobacillus ferrooxidans ATCC 53993 6877333 YP_002219800.1 CDS Lferr_1360 NC_011206.1 1317080 1318330 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ppw:PputW619_2304 protein of unknown function DUF224 cysteine-rich region domain protein; hypothetical protein complement(1317080..1318330) Acidithiobacillus ferrooxidans ATCC 53993 6877334 YP_002219801.1 CDS glcE NC_011206.1 1318340 1319452 R PFAM: FAD linked oxidase domain protein; KEGG: noc:Noc_0844 glycolate oxidase FAD binding subunit; glycolate oxidase FAD-binding subunit complement(1318340..1319452) Acidithiobacillus ferrooxidans ATCC 53993 6877335 YP_002219802.1 CDS Lferr_1362 NC_011206.1 1319406 1320872 R PFAM: FAD linked oxidase domain protein; KEGG: noc:Noc_0495 D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase complement(1319406..1320872) Acidithiobacillus ferrooxidans ATCC 53993 6877336 YP_002219803.1 CDS Lferr_1363 NC_011206.1 1320887 1322224 R KEGG: ava:Ava_3476 hypothetical protein; hypothetical protein complement(1320887..1322224) Acidithiobacillus ferrooxidans ATCC 53993 6877337 YP_002219804.1 CDS Lferr_1364 NC_011206.1 1322237 1324456 R PFAM: Transketolase central region; KEGG: tel:tll1846 hypothetical protein; transketolase central region complement(1322237..1324456) Acidithiobacillus ferrooxidans ATCC 53993 6877338 YP_002219805.1 CDS Lferr_1365 NC_011206.1 1324554 1325333 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: cps:CPS_4891 transcriptional regulator, IclR family; IclR family transcriptional regulator 1324554..1325333 Acidithiobacillus ferrooxidans ATCC 53993 6877339 YP_002219806.1 CDS Lferr_1366 NC_011206.1 1325633 1325902 D hypothetical protein 1325633..1325902 Acidithiobacillus ferrooxidans ATCC 53993 6877340 YP_002219807.1 CDS Lferr_1367 NC_011206.1 1325969 1326847 D KEGG: pnu:Pnuc_2057 hypothetical protein; hypothetical protein 1325969..1326847 Acidithiobacillus ferrooxidans ATCC 53993 6877341 YP_002219808.1 CDS Lferr_1368 NC_011206.1 1326903 1327463 D hypothetical protein 1326903..1327463 Acidithiobacillus ferrooxidans ATCC 53993 6877342 YP_002219809.1 CDS Lferr_1369 NC_011206.1 1327531 1328568 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1327531..1328568 Acidithiobacillus ferrooxidans ATCC 53993 6877343 YP_002219810.1 CDS Lferr_1370 NC_011206.1 1328650 1330323 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1328650..1330323 Acidithiobacillus ferrooxidans ATCC 53993 6877344 YP_002219811.1 CDS Lferr_1371 NC_011206.1 1330327 1331313 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: eba:ebA110 putative translation factor (SUA5); Sua5/YciO/YrdC/YwlC family protein complement(1330327..1331313) Acidithiobacillus ferrooxidans ATCC 53993 6877345 YP_002219812.1 CDS Lferr_1372 NC_011206.1 1331317 1331511 R hypothetical protein complement(1331317..1331511) Acidithiobacillus ferrooxidans ATCC 53993 6877346 YP_002219813.1 CDS Lferr_1373 NC_011206.1 1331508 1332296 R TIGRFAM: dethiobiotin synthase; KEGG: ade:Adeh_0070 dethiobiotin synthase; dethiobiotin synthase complement(1331508..1332296) Acidithiobacillus ferrooxidans ATCC 53993 6877347 YP_002219814.1 CDS Lferr_1374 NC_011206.1 1332293 1333474 R PFAM: ketose-bisphosphate aldolase class-II; KEGG: bbt:BBta_0455 putative fructose 1,6-bisphosphate aldolase; ketose-bisphosphate aldolase class-II complement(1332293..1333474) Acidithiobacillus ferrooxidans ATCC 53993 6877348 YP_002219815.1 CDS Lferr_1375 NC_011206.1 1333600 1335951 R PFAM: von Willebrand factor type A; KEGG: tbd:Tbd_2621 rubisco activation protein CbbO; hypothetical protein complement(1333600..1335951) Acidithiobacillus ferrooxidans ATCC 53993 6877349 YP_002219816.1 CDS Lferr_1376 NC_011206.1 1335967 1336770 R PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: neu:NE1919 nitric oxide reductase NorQ protein; CbbQ/NirQ/NorQ domain-containing protein complement(1335967..1336770) Acidithiobacillus ferrooxidans ATCC 53993 6877350 YP_002219817.1 CDS Lferr_1377 NC_011206.1 1336801 1337055 R hypothetical protein complement(1336801..1337055) Acidithiobacillus ferrooxidans ATCC 53993 6877351 YP_002219818.1 CDS Lferr_1378 NC_011206.1 1337046 1337681 R ParA family protein complement(1337046..1337681) Acidithiobacillus ferrooxidans ATCC 53993 6877352 YP_002219819.1 CDS Lferr_1379 NC_011206.1 1337718 1337996 R KEGG: tbd:Tbd_2642 hypothetical protein; hypothetical protein complement(1337718..1337996) Acidithiobacillus ferrooxidans ATCC 53993 6877353 YP_002219820.1 CDS Lferr_1380 NC_011206.1 1337993 1338418 R PFAM: Ferritin Dps family protein; KEGG: tbd:Tbd_2643 bacterioferritin; ferritin Dps family protein complement(1337993..1338418) Acidithiobacillus ferrooxidans ATCC 53993 6877354 YP_002219821.1 CDS Lferr_1381 NC_011206.1 1338450 1338788 R PFAM: microcompartments protein; KEGG: net:Neut_0811 microcompartments protein; microcompartments protein complement(1338450..1338788) Acidithiobacillus ferrooxidans ATCC 53993 6877355 YP_002219822.1 CDS Lferr_1382 NC_011206.1 1338834 1339130 R PFAM: microcompartments protein; KEGG: net:Neut_0811 microcompartments protein; microcompartments protein complement(1338834..1339130) Acidithiobacillus ferrooxidans ATCC 53993 6877356 YP_002219823.1 CDS Lferr_1383 NC_011206.1 1339175 1339471 R PFAM: microcompartments protein; KEGG: net:Neut_0811 microcompartments protein; microcompartments protein complement(1339175..1339471) Acidithiobacillus ferrooxidans ATCC 53993 6877357 YP_002219824.1 CDS Lferr_1384 NC_011206.1 1339503 1339769 R TIGRFAM: carboxysome peptide B; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: tbd:Tbd_2647 Carboxysome protein B; carboxysome peptide B complement(1339503..1339769) Acidithiobacillus ferrooxidans ATCC 53993 6877358 YP_002219825.1 CDS Lferr_1385 NC_011206.1 1339780 1340028 R TIGRFAM: carboxysome peptide A; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: tbd:Tbd_2648 carboxysome protein A; carboxysome peptide A complement(1339780..1340028) Acidithiobacillus ferrooxidans ATCC 53993 6877359 YP_002219826.1 CDS Lferr_1386 NC_011206.1 1340025 1341626 R TIGRFAM: carboxysome shell carbonic anhydrase; PFAM: Carboxysome shell carbonic anhydrase; KEGG: tbd:Tbd_2649 carboxysome shell protein CsoS3, carbonic anhydrase epsilon; carboxysome shell carbonic anhydrase complement(1340025..1341626) Acidithiobacillus ferrooxidans ATCC 53993 6877360 YP_002219827.1 CDS Lferr_1387 NC_011206.1 1341682 1343982 R KEGG: tbd:Tbd_2650 carboxysome structural protein CsoS2; carboxysome structural protein CsoS2 complement(1341682..1343982) Acidithiobacillus ferrooxidans ATCC 53993 6877361 YP_002219828.1 CDS Lferr_1388 NC_011206.1 1344053 1344385 R PFAM: ribulose bisphosphate carboxylase small chain; KEGG: mca:MCA2744 ribulose bisphosphate carboxylase, small subunit; ribulose-bisphosphate carboxylase complement(1344053..1344385) Acidithiobacillus ferrooxidans ATCC 53993 6877362 YP_002219829.1 CDS rbcL NC_011206.1 1344477 1345898 R type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase complement(1344477..1345898) Acidithiobacillus ferrooxidans ATCC 53993 6877363 YP_002219830.1 CDS Lferr_1390 NC_011206.1 1346043 1346969 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_1502 transcriptional regulator, LysR family; LysR family transcriptional regulator 1346043..1346969 Acidithiobacillus ferrooxidans ATCC 53993 6877364 YP_002219831.1 CDS Lferr_1391 NC_011206.1 1347413 1348270 D KEGG: scl:sce5771 hypothetical protein; hypothetical protein 1347413..1348270 Acidithiobacillus ferrooxidans ATCC 53993 6877365 YP_002219832.1 CDS Lferr_1392 NC_011206.1 1348580 1349248 D KEGG: net:Neut_2549 conjugal transfer protein; conjugal transfer protein 1348580..1349248 Acidithiobacillus ferrooxidans ATCC 53993 6877366 YP_002219833.1 CDS Lferr_1393 NC_011206.1 1349261 1350376 D PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pna:Pnap_2510 conjugal transfer protein TrbG/VirB9/CagX; conjugal transfer protein TrbG/VirB9/CagX 1349261..1350376 Acidithiobacillus ferrooxidans ATCC 53993 6877367 YP_002219834.1 CDS Lferr_1394 NC_011206.1 1350378 1351394 D KEGG: cak:Caul_2034 P-type conjugative transfer protein TrbG; hypothetical protein 1350378..1351394 Acidithiobacillus ferrooxidans ATCC 53993 6877368 YP_002219835.1 CDS Lferr_1395 NC_011206.1 1351397 1352857 D PFAM: conjugation TrbI family protein; KEGG: ret:RHE_PA00169 conjugal transfer protein I; conjugation TrbI family protein 1351397..1352857 Acidithiobacillus ferrooxidans ATCC 53993 6877369 YP_002219836.1 CDS Lferr_1396 NC_011206.1 1352868 1353170 D hypothetical protein 1352868..1353170 Acidithiobacillus ferrooxidans ATCC 53993 6877370 YP_002219837.1 CDS Lferr_1397 NC_011206.1 1353167 1353823 D PFAM: Lytic transglycosylase catalytic; KEGG: acr:Acry_3520 lytic transglycosylase, catalytic; Lytic transglycosylase 1353167..1353823 Acidithiobacillus ferrooxidans ATCC 53993 6877371 YP_002219838.1 CDS Lferr_1398 NC_011206.1 1353834 1356320 D PFAM: TRAG family protein; KEGG: eba:p2B19 conjugal transfer protein TraG; TRAG family protein 1353834..1356320 Acidithiobacillus ferrooxidans ATCC 53993 6877372 YP_002219839.1 CDS Lferr_1399 NC_011206.1 1356430 1356624 D KEGG: ecs:ECs1068 hypothetical protein; hypothetical protein 1356430..1356624 Acidithiobacillus ferrooxidans ATCC 53993 6877373 YP_002219840.1 CDS Lferr_1400 NC_011206.1 1356626 1356832 D KEGG: ecs:ECs1067 hypothetical protein; hypothetical protein 1356626..1356832 Acidithiobacillus ferrooxidans ATCC 53993 6877374 YP_002219841.1 CDS Lferr_1401 NC_011206.1 1357765 1358259 D KEGG: nve:NEMVE_v1g245607 predicted protein; hypothetical protein 1357765..1358259 Acidithiobacillus ferrooxidans ATCC 53993 6877375 YP_002219842.1 CDS Lferr_1402 NC_011206.1 1358260 1358418 D hypothetical protein 1358260..1358418 Acidithiobacillus ferrooxidans ATCC 53993 6877376 YP_002219843.1 CDS Lferr_1404 NC_011206.1 1362059 1362835 R PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1362059..1362835) Acidithiobacillus ferrooxidans ATCC 53993 6877378 YP_002219844.1 CDS Lferr_1405 NC_011206.1 1362940 1365579 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: dar:Daro_3990 PAS:GGDEF; diguanylate cyclase/phosphodiesterase complement(1362940..1365579) Acidithiobacillus ferrooxidans ATCC 53993 6877379 YP_002219845.1 CDS Lferr_1406 NC_011206.1 1366004 1366192 R hypothetical protein complement(1366004..1366192) Acidithiobacillus ferrooxidans ATCC 53993 6877380 YP_002219846.1 CDS Lferr_1407 NC_011206.1 1366189 1366422 R KEGG: bvi:Bcep1808_2162 hypothetical protein; hypothetical protein complement(1366189..1366422) Acidithiobacillus ferrooxidans ATCC 53993 6877381 YP_002219847.1 CDS Lferr_1408 NC_011206.1 1366430 1367329 R KEGG: pto:PTO0992 hypothetical cardiolipin synthase; cardiolipin synthase complement(1366430..1367329) Acidithiobacillus ferrooxidans ATCC 53993 6877382 YP_002219848.1 CDS Lferr_1409 NC_011206.1 1367657 1367914 R hypothetical protein complement(1367657..1367914) Acidithiobacillus ferrooxidans ATCC 53993 6877383 YP_002219849.1 CDS Lferr_1410 NC_011206.1 1367998 1369236 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sth:STH3332 ParBc, ParB-like nuclease domain; parB-like partition protein complement(1367998..1369236) Acidithiobacillus ferrooxidans ATCC 53993 6877384 YP_002219850.1 CDS Lferr_1411 NC_011206.1 1369238 1370008 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xfa:XFa0060 plasmid replication protein; cobyrinic acid ac-diamide synthase complement(1369238..1370008) Acidithiobacillus ferrooxidans ATCC 53993 6877385 YP_002219851.1 CDS Lferr_1412 NC_011206.1 1369987 1370427 R hypothetical protein complement(1369987..1370427) Acidithiobacillus ferrooxidans ATCC 53993 6877386 YP_002219852.1 CDS Lferr_1413 NC_011206.1 1370557 1370925 D KEGG: dps:DP0200 hypothetical protein; hypothetical protein 1370557..1370925 Acidithiobacillus ferrooxidans ATCC 53993 6877387 YP_002219853.1 CDS Lferr_1414 NC_011206.1 1370936 1371934 R PFAM: aldo/keto reductase; KEGG: pap:PSPA7_4242 probable oxidoreductase; aldo/keto reductase complement(1370936..1371934) Acidithiobacillus ferrooxidans ATCC 53993 6877388 YP_002219854.1 CDS Lferr_1415 NC_011206.1 1372189 1375326 D KEGG: dar:Daro_3990 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1372189..1375326 Acidithiobacillus ferrooxidans ATCC 53993 6877389 YP_002219855.1 CDS Lferr_1416 NC_011206.1 1375453 1375998 R KEGG: mes:Meso_0519 conjugal transfer protein precursor; conjugal transfer protein complement(1375453..1375998) Acidithiobacillus ferrooxidans ATCC 53993 6877390 YP_002219856.1 CDS Lferr_1417 NC_011206.1 1376021 1376410 D KEGG: pla:Plav_2045 hypothetical protein; hypothetical protein 1376021..1376410 Acidithiobacillus ferrooxidans ATCC 53993 6877391 YP_002219857.1 CDS Lferr_1418 NC_011206.1 1376391 1376732 D KEGG: mar:MAE_16400 hypothetical protein; hypothetical protein 1376391..1376732 Acidithiobacillus ferrooxidans ATCC 53993 6877392 YP_002219858.1 CDS Lferr_1419 NC_011206.1 1376740 1376952 R hypothetical protein complement(1376740..1376952) Acidithiobacillus ferrooxidans ATCC 53993 6877393 YP_002219859.1 CDS Lferr_1420 NC_011206.1 1376915 1377208 R hypothetical protein complement(1376915..1377208) Acidithiobacillus ferrooxidans ATCC 53993 6877394 YP_002219860.1 CDS Lferr_1421 NC_011206.1 1377257 1378567 R PFAM: TraB family protein; KEGG: nha:Nham_4542 TraB; conjugal transfer protein TraB complement(1377257..1378567) Acidithiobacillus ferrooxidans ATCC 53993 6877395 YP_002219861.1 CDS Lferr_1422 NC_011206.1 1378844 1379056 D hypothetical protein 1378844..1379056 Acidithiobacillus ferrooxidans ATCC 53993 6877396 YP_002219862.1 CDS Lferr_1423 NC_011206.1 1379068 1379511 D PFAM: protein of unknown function UPF0150; KEGG: reh:H16_B2375 hypothetical protein; hypothetical protein 1379068..1379511 Acidithiobacillus ferrooxidans ATCC 53993 6877397 YP_002219863.1 CDS Lferr_1424 NC_011206.1 1379617 1379913 D TIGRFAM: addiction module antidote protein; KEGG: rru:Rru_A0456 predicted transcriptional regulator; transcriptional regulator 1379617..1379913 Acidithiobacillus ferrooxidans ATCC 53993 6877398 YP_002219864.1 CDS Lferr_1425 NC_011206.1 1380612 1382663 R KEGG: eba:p2B17 TraE protein (DNA topoisomerase); TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase III complement(1380612..1382663) Acidithiobacillus ferrooxidans ATCC 53993 6877399 YP_002219865.1 CDS Lferr_1426 NC_011206.1 1382782 1383696 R PFAM: Integrase catalytic region; KEGG: bmu:Bmul_5725 integrase catalytic region; integrase catalytic subunit complement(1382782..1383696) Acidithiobacillus ferrooxidans ATCC 53993 6877400 YP_002219866.1 CDS Lferr_1427 NC_011206.1 1383693 1384022 R PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_3905 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1383693..1384022) Acidithiobacillus ferrooxidans ATCC 53993 6877401 YP_002219867.1 CDS Lferr_1428 NC_011206.1 1384274 1384912 D KEGG: hau:Haur_4474 HNH endonuclease; restriction endonuclease-like protein 1384274..1384912 Acidithiobacillus ferrooxidans ATCC 53993 6877402 YP_002219868.1 CDS Lferr_1429 NC_011206.1 1385042 1385458 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: net:Neut_0144 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1385042..1385458 Acidithiobacillus ferrooxidans ATCC 53993 6877403 YP_002219869.1 CDS Lferr_1430 NC_011206.1 1385570 1386853 D KEGG: fjo:Fjoh_3606 hypothetical protein; hypothetical protein 1385570..1386853 Acidithiobacillus ferrooxidans ATCC 53993 6877404 YP_002219870.1 CDS Lferr_1431 NC_011206.1 1387326 1387910 D PFAM: carbonic anhydrase; KEGG: noc:Noc_1341 carbonic anhydrase; carbonic anhydrase 1387326..1387910 Acidithiobacillus ferrooxidans ATCC 53993 6877405 YP_002219871.1 CDS Lferr_1432 NC_011206.1 1388245 1389369 D PFAM: UMUC domain protein DNA-repair protein; KEGG: aeh:Mlg_2775 DNA-directed DNA polymerase; DNA-directed DNA polymerase 1388245..1389369 Acidithiobacillus ferrooxidans ATCC 53993 6877406 YP_002219872.1 CDS Lferr_1434 NC_011206.1 1390424 1391761 R PFAM: phospholipase D/Transphosphatidylase; KEGG: tbd:Tbd_2243 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(1390424..1391761) Acidithiobacillus ferrooxidans ATCC 53993 6877408 YP_002219873.1 CDS Lferr_1435 NC_011206.1 1391892 1392065 D hypothetical protein 1391892..1392065 Acidithiobacillus ferrooxidans ATCC 53993 6877409 YP_002219874.1 CDS Lferr_1436 NC_011206.1 1392052 1392582 D hypothetical protein 1392052..1392582 Acidithiobacillus ferrooxidans ATCC 53993 6877410 YP_002219875.1 CDS Lferr_1437 NC_011206.1 1393083 1395695 R TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: pap:PSPA7_1519 DNA mismatch repair protein MutS; DNA mismatch repair protein MutS complement(1393083..1395695) Acidithiobacillus ferrooxidans ATCC 53993 6877411 YP_002219876.1 CDS Lferr_1438 NC_011206.1 1395720 1395956 R KEGG: dar:Daro_0859 hypothetical protein; hypothetical protein complement(1395720..1395956) Acidithiobacillus ferrooxidans ATCC 53993 6877412 YP_002219877.1 CDS Lferr_1439 NC_011206.1 1396088 1396264 D KEGG: stp:Strop_0409 protein of unknown function DUF520; hypothetical protein 1396088..1396264 Acidithiobacillus ferrooxidans ATCC 53993 6877413 YP_002219878.1 CDS Lferr_1440 NC_011206.1 1396280 1397524 D PFAM: glycosyl transferase group 1; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 1396280..1397524 Acidithiobacillus ferrooxidans ATCC 53993 6877414 YP_002219879.1 CDS Lferr_1441 NC_011206.1 1397756 1398448 R PFAM: protein of unknown function UPF0005; KEGG: mpt:Mpe_A1726 hypothetical protein; hypothetical protein complement(1397756..1398448) Acidithiobacillus ferrooxidans ATCC 53993 6877415 YP_002219880.1 CDS Lferr_1442 NC_011206.1 1398677 1399339 D PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: pnu:Pnuc_0699 exonuclease, RNase T and DNA polymerase III; Exonuclease RNase T and DNA polymerase III 1398677..1399339 Acidithiobacillus ferrooxidans ATCC 53993 6877416 YP_002219881.1 CDS Lferr_1443 NC_011206.1 1399312 1399938 R KEGG: mca:MCA0526 hypothetical protein; hypothetical protein complement(1399312..1399938) Acidithiobacillus ferrooxidans ATCC 53993 6877417 YP_002219882.1 CDS Lferr_1444 NC_011206.1 1399935 1400336 R PFAM: Smr protein/MutS2; KEGG: gme:Gmet_1296 Smr protein/MutS2-like; Smr protein/MutS2 complement(1399935..1400336) Acidithiobacillus ferrooxidans ATCC 53993 6877418 YP_002219883.1 CDS Lferr_1445 NC_011206.1 1400383 1404216 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: aeh:Mlg_1638 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(1400383..1404216) Acidithiobacillus ferrooxidans ATCC 53993 6877419 YP_002219884.1 CDS panC NC_011206.1 1404216 1405052 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(1404216..1405052) Acidithiobacillus ferrooxidans ATCC 53993 6877420 YP_002219885.1 CDS Lferr_1447 NC_011206.1 1405054 1405839 R KEGG: acr:Acry_0665 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(1405054..1405839) Acidithiobacillus ferrooxidans ATCC 53993 6877421 YP_002219886.1 CDS Lferr_1448 NC_011206.1 1405832 1406443 R KEGG: abo:ABO_0338 deoxynucleoside kinase; deoxynucleoside kinase complement(1405832..1406443) Acidithiobacillus ferrooxidans ATCC 53993 6877422 YP_002219887.1 CDS Lferr_1449 NC_011206.1 1406440 1406970 R KEGG: dar:Daro_3183 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1406440..1406970) Acidithiobacillus ferrooxidans ATCC 53993 6877423 YP_002219888.1 CDS Lferr_1450 NC_011206.1 1406967 1408319 R PFAM: Polynucleotide adenylyltransferase region; KEGG: ppd:Ppro_3306 polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase complement(1406967..1408319) Acidithiobacillus ferrooxidans ATCC 53993 6877424 YP_002219889.1 CDS Lferr_1451 NC_011206.1 1408341 1409834 R KEGG: csa:Csal_3063 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase complement(1408341..1409834) Acidithiobacillus ferrooxidans ATCC 53993 6877425 YP_002219890.1 CDS Lferr_1452 NC_011206.1 1409969 1410973 R PFAM: glycosyl transferase family 2; KEGG: acr:Acry_0724 glycosyl transferase, family 2; family 2 glycosyl transferase complement(1409969..1410973) Acidithiobacillus ferrooxidans ATCC 53993 6877426 YP_002219891.1 CDS Lferr_1453 NC_011206.1 1411112 1412572 D KEGG: tbd:Tbd_1752 IMP dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 1411112..1412572 Acidithiobacillus ferrooxidans ATCC 53993 6877427 YP_002219892.1 CDS Lferr_1454 NC_011206.1 1412576 1414120 D TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; KEGG: sfu:Sfum_2123 GMP synthase, large subunit; GMP synthase 1412576..1414120 Acidithiobacillus ferrooxidans ATCC 53993 6877428 YP_002219893.1 CDS Lferr_1455 NC_011206.1 1414294 1414548 D KEGG: smd:Smed_5670 plasmid stability protein-like protein; plasmid stability protein-like protein 1414294..1414548 Acidithiobacillus ferrooxidans ATCC 53993 6877429 YP_002219894.1 CDS Lferr_1456 NC_011206.1 1414549 1414968 D PFAM: PilT protein domain protein; KEGG: pna:Pnap_4764 PilT protein domain protein; PilT protein domain-containing protein 1414549..1414968 Acidithiobacillus ferrooxidans ATCC 53993 6877430 YP_002219895.1 CDS Lferr_1457 NC_011206.1 1414986 1415198 D TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: rca:Rcas_2861 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 1414986..1415198 Acidithiobacillus ferrooxidans ATCC 53993 6877431 YP_002219896.1 CDS Lferr_1458 NC_011206.1 1415198 1415353 D hypothetical protein 1415198..1415353 Acidithiobacillus ferrooxidans ATCC 53993 6877432 YP_002219897.1 CDS Lferr_1459 NC_011206.1 1416033 1417652 D PFAM: amino acid permease-associated region; KEGG: bur:Bcep18194_C6568 putative amino acid transporter; amino acid permease-associated protein 1416033..1417652 Acidithiobacillus ferrooxidans ATCC 53993 6877433 YP_002219898.1 CDS Lferr_1460 NC_011206.1 1417743 1418942 D KEGG: psa:PST_0959 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; glutamate 5-kinase 1417743..1418942 Acidithiobacillus ferrooxidans ATCC 53993 6877434 YP_002219899.1 CDS Lferr_1461 NC_011206.1 1419018 1421375 R PFAM: MscS Mechanosensitive ion channel; KEGG: cbd:COXBU7E912_0384 transporter, small conductance mechanosensitive ion channel (MscS) family protein; mechanosensitive ion channel protein MscS complement(1419018..1421375) Acidithiobacillus ferrooxidans ATCC 53993 6877435 YP_002219900.1 CDS Lferr_1462 NC_011206.1 1421747 1422025 D hypothetical protein 1421747..1422025 Acidithiobacillus ferrooxidans ATCC 53993 6877436 YP_002219901.1 CDS Lferr_1463 NC_011206.1 1422052 1422876 R KEGG: reh:H16_A2063 hypothetical protein; hypothetical protein complement(1422052..1422876) Acidithiobacillus ferrooxidans ATCC 53993 6877437 YP_002219902.1 CDS Lferr_1464 NC_011206.1 1423015 1423650 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: pfo:Pfl_1488 SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC family protein 1423015..1423650 Acidithiobacillus ferrooxidans ATCC 53993 6877438 YP_002219903.1 CDS Lferr_1465 NC_011206.1 1423701 1424360 D PFAM: peptidase M50; KEGG: noc:Noc_1037 peptidase M50; peptidase M50 1423701..1424360 Acidithiobacillus ferrooxidans ATCC 53993 6877439 YP_002219904.1 CDS Lferr_1466 NC_011206.1 1424360 1425571 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1424360..1425571 Acidithiobacillus ferrooxidans ATCC 53993 6877440 YP_002219905.1 CDS Lferr_1467 NC_011206.1 1425552 1426373 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: aeh:Mlg_0721 condensin subunit ScpA; chromosome segregation and condensation protein ScpA 1425552..1426373 Acidithiobacillus ferrooxidans ATCC 53993 6877441 YP_002219906.1 CDS Lferr_1468 NC_011206.1 1426373 1426906 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: psa:PST_2445 predicted transcriptional regulator; segregation and condensation protein B 1426373..1426906 Acidithiobacillus ferrooxidans ATCC 53993 6877442 YP_002219907.1 CDS Lferr_1469 NC_011206.1 1427069 1428373 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pna:Pnap_2831 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1427069..1428373 Acidithiobacillus ferrooxidans ATCC 53993 6877443 YP_002219908.1 CDS Lferr_1470 NC_011206.1 1428497 1429375 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_2246 pseudouridine synthase; RNA-binding S4 domain-containing protein 1428497..1429375 Acidithiobacillus ferrooxidans ATCC 53993 6877444 YP_002219909.1 CDS Lferr_1471 NC_011206.1 1429385 1430056 D PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: aeh:Mlg_0904 HhH-GPD family protein; HhH-GPD family protein 1429385..1430056 Acidithiobacillus ferrooxidans ATCC 53993 6877445 YP_002219910.1 CDS Lferr_1472 NC_011206.1 1430093 1430353 R PFAM: Transglycosylase-associated protein; KEGG: hne:HNE_0591 hypothetical protein; transglycosylase-associated protein complement(1430093..1430353) Acidithiobacillus ferrooxidans ATCC 53993 6877446 YP_002219911.1 CDS Lferr_1473 NC_011206.1 1430360 1430632 R hypothetical protein complement(1430360..1430632) Acidithiobacillus ferrooxidans ATCC 53993 6877447 YP_002219912.1 CDS Lferr_1474 NC_011206.1 1430640 1432172 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: spl:Spea_2190 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter complement(1430640..1432172) Acidithiobacillus ferrooxidans ATCC 53993 6877448 YP_002219913.1 CDS Lferr_1475 NC_011206.1 1432175 1432732 R KEGG: nis:NIS_0014 hypothetical protein; hypothetical protein complement(1432175..1432732) Acidithiobacillus ferrooxidans ATCC 53993 6877449 YP_002219914.1 CDS Lferr_1476 NC_011206.1 1432745 1435270 R KEGG: sat:SYN_02761 glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase complement(1432745..1435270) Acidithiobacillus ferrooxidans ATCC 53993 6877450 YP_002219915.1 CDS Lferr_1478 NC_011206.1 1435689 1437116 R KEGG: sfu:Sfum_1475 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(1435689..1437116) Acidithiobacillus ferrooxidans ATCC 53993 6877452 YP_002219916.1 CDS Lferr_1479 NC_011206.1 1437113 1438033 R PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: mem:Memar_1367 aldolase; aldolase complement(1437113..1438033) Acidithiobacillus ferrooxidans ATCC 53993 6877453 YP_002219917.1 CDS Lferr_1480 NC_011206.1 1438026 1439423 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mta:Moth_1431 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1438026..1439423) Acidithiobacillus ferrooxidans ATCC 53993 6877454 YP_002219918.1 CDS Lferr_1481 NC_011206.1 1439936 1440385 D KEGG: azc:AZC_0512 putative sel1-like repeat protein; hypothetical protein 1439936..1440385 Acidithiobacillus ferrooxidans ATCC 53993 6877455 YP_002219919.1 CDS Lferr_1482 NC_011206.1 1440511 1441470 R KEGG: cac:CAC0232 1-phosphofructokinase (fructoso 1-phosphate kinase); TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase complement(1440511..1441470) Acidithiobacillus ferrooxidans ATCC 53993 6877456 YP_002219920.1 CDS Lferr_1483 NC_011206.1 1441467 1442390 R PFAM: phosphate acetyl/butaryl transferase; KEGG: pna:Pnap_3568 phosphate butyryltransferase; phosphate butyryltransferase complement(1441467..1442390) Acidithiobacillus ferrooxidans ATCC 53993 6877457 YP_002219921.1 CDS Lferr_1484 NC_011206.1 1442415 1443839 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mhu:Mhun_1633 general substrate transporter; major facilitator superfamily protein complement(1442415..1443839) Acidithiobacillus ferrooxidans ATCC 53993 6877458 YP_002219922.1 CDS Lferr_1487 NC_011206.1 1445223 1446542 R KEGG: sma:SAV256 transposase; hypothetical protein complement(1445223..1446542) Acidithiobacillus ferrooxidans ATCC 53993 6877461 YP_002219923.1 CDS Lferr_1488 NC_011206.1 1447153 1448421 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: noc:Noc_2109 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component and related enzyme; hypothetical protein complement(1447153..1448421) Acidithiobacillus ferrooxidans ATCC 53993 6877462 YP_002219924.1 CDS Lferr_1489 NC_011206.1 1448418 1449410 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: noc:Noc_2110 pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component; transketolase central region complement(1448418..1449410) Acidithiobacillus ferrooxidans ATCC 53993 6877463 YP_002219925.1 CDS Lferr_1490 NC_011206.1 1449407 1450495 R PFAM: dehydrogenase E1 component; KEGG: gme:Gmet_2760 dehydrogenase, E1 component; pyruvate dehydrogenase (acetyl-transferring) complement(1449407..1450495) Acidithiobacillus ferrooxidans ATCC 53993 6877464 YP_002219926.1 CDS Lferr_1491 NC_011206.1 1450464 1450814 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sun:SUN_0964 hypothetical protein; AhpD family alkylhydroperoxidase-like protein complement(1450464..1450814) Acidithiobacillus ferrooxidans ATCC 53993 6877465 YP_002219927.1 CDS Lferr_1492 NC_011206.1 1450850 1452373 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(1450850..1452373) Acidithiobacillus ferrooxidans ATCC 53993 6877466 YP_002219928.1 CDS Lferr_1493 NC_011206.1 1452370 1454781 R TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: mva:Mvan_4106 phosphoenolpyruvate synthase; phosphoenolpyruvate synthase complement(1452370..1454781) Acidithiobacillus ferrooxidans ATCC 53993 6877467 YP_002219929.1 CDS Lferr_1494 NC_011206.1 1454876 1455838 R PFAM: sulfotransferase; KEGG: amr:AM1_5717 sulfotransferase; sulfotransferase complement(1454876..1455838) Acidithiobacillus ferrooxidans ATCC 53993 6877468 YP_002219930.1 CDS Lferr_1495 NC_011206.1 1455850 1456674 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: mca:MCA2972 rare lipoprotein A domain protein; rare lipoprotein A complement(1455850..1456674) Acidithiobacillus ferrooxidans ATCC 53993 6877469 YP_002219931.1 CDS Lferr_1496 NC_011206.1 1456664 1457812 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1456664..1457812) Acidithiobacillus ferrooxidans ATCC 53993 6877470 YP_002219932.1 CDS Lferr_1497 NC_011206.1 1457824 1458648 R TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: bmu:Bmul_1247 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase complement(1457824..1458648) Acidithiobacillus ferrooxidans ATCC 53993 6877471 YP_002219933.1 CDS Lferr_1498 NC_011206.1 1458662 1459867 R PFAM: aminotransferase class I and II; KEGG: aeh:Mlg_1866 hypothetical protein; class I/II aminotransferase complement(1458662..1459867) Acidithiobacillus ferrooxidans ATCC 53993 6877472 YP_002219934.1 CDS Lferr_1499 NC_011206.1 1460224 1460973 D KEGG: nmu:Nmul_A1849 protein of unknown function DUF6; hypothetical protein 1460224..1460973 Acidithiobacillus ferrooxidans ATCC 53993 6877473 YP_002219935.1 CDS Lferr_1500 NC_011206.1 1460935 1461609 R TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bpa:BPP3137 phosphoglycolate phosphatase 2; phosphoglycolate phosphatase complement(1460935..1461609) Acidithiobacillus ferrooxidans ATCC 53993 6877474 YP_002219936.1 CDS Lferr_1501 NC_011206.1 1461602 1462309 R KEGG: mfa:Mfla_1576 ubiquinone biosynthesis O-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase complement(1461602..1462309) Acidithiobacillus ferrooxidans ATCC 53993 6877475 YP_002219937.1 CDS Lferr_1502 NC_011206.1 1462306 1463631 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aeh:Mlg_0911 N-ethylammeline chlorohydrolase; amidohydrolase complement(1462306..1463631) Acidithiobacillus ferrooxidans ATCC 53993 6877476 YP_002219938.1 CDS Lferr_1503 NC_011206.1 1463711 1464727 R KEGG: aeh:Mlg_0174 lytic murein transglycosylase B; lytic murein transglycosylase B complement(1463711..1464727) Acidithiobacillus ferrooxidans ATCC 53993 6877477 YP_002219939.1 CDS Lferr_1504 NC_011206.1 1464934 1465500 R PFAM: NLP/P60 protein; KEGG: mca:MCA2789 NLP/P60 family protein; NLP/P60 protein complement(1464934..1465500) Acidithiobacillus ferrooxidans ATCC 53993 6877478 YP_002219940.1 CDS Lferr_1505 NC_011206.1 1466261 1466914 R PFAM: toluene tolerance family protein; KEGG: azo:azo0810 conserved hypothetical secreted protein; toluene tolerance family protein complement(1466261..1466914) Acidithiobacillus ferrooxidans ATCC 53993 6877480 YP_002219941.1 CDS Lferr_1506 NC_011206.1 1466946 1467488 R KEGG: noc:Noc_1000 hypothetical protein; hypothetical protein complement(1466946..1467488) Acidithiobacillus ferrooxidans ATCC 53993 6877481 YP_002219942.1 CDS Lferr_1507 NC_011206.1 1467516 1468298 R KEGG: syf:Synpcc7942_1895 hypothetical protein; hypothetical protein complement(1467516..1468298) Acidithiobacillus ferrooxidans ATCC 53993 6877482 YP_002219943.1 CDS Lferr_1508 NC_011206.1 1468320 1469270 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: ssn:SSON_2889 RNA polymerase sigma factor RpoS; RpoD family RNA polymerase sigma-70 subunit complement(1468320..1469270) Acidithiobacillus ferrooxidans ATCC 53993 6877483 YP_002219944.1 CDS Lferr_1509 NC_011206.1 1469292 1469648 R hypothetical protein complement(1469292..1469648) Acidithiobacillus ferrooxidans ATCC 53993 6877484 YP_002219945.1 CDS Lferr_1510 NC_011206.1 1470002 1471321 D KEGG: sma:SAV256 transposase; hypothetical protein 1470002..1471321 Acidithiobacillus ferrooxidans ATCC 53993 6877485 YP_002219946.1 CDS Lferr_1511 NC_011206.1 1471443 1471757 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 1471443..1471757 Acidithiobacillus ferrooxidans ATCC 53993 6877486 YP_002219947.1 CDS Lferr_1512 NC_011206.1 1472062 1473381 D KEGG: sma:SAV256 transposase; hypothetical protein 1472062..1473381 Acidithiobacillus ferrooxidans ATCC 53993 6877487 YP_002219948.1 CDS Lferr_1514 NC_011206.1 1474400 1474804 R KEGG: bcm:Bcenmc03_5743 hypothetical protein; hypothetical protein complement(1474400..1474804) Acidithiobacillus ferrooxidans ATCC 53993 6877489 YP_002219949.1 CDS Lferr_1515 NC_011206.1 1474906 1475733 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B267 transposition helper protein; IstB domain-containing ATP-binding protein complement(1474906..1475733) Acidithiobacillus ferrooxidans ATCC 53993 6877490 YP_002219950.1 CDS Lferr_1516 NC_011206.1 1475730 1477214 R PFAM: Integrase catalytic region; KEGG: eba:p2A256 transposase; integrase catalytic subunit complement(1475730..1477214) Acidithiobacillus ferrooxidans ATCC 53993 6877491 YP_002219951.1 CDS Lferr_1518 NC_011206.1 1477753 1478169 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: net:Neut_1850 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 1477753..1478169 Acidithiobacillus ferrooxidans ATCC 53993 6877493 YP_002219952.1 CDS Lferr_1520 NC_011206.1 1479694 1479900 D hypothetical protein 1479694..1479900 Acidithiobacillus ferrooxidans ATCC 53993 6877495 YP_002219953.1 CDS Lferr_1522 NC_011206.1 1480271 1482301 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: rca:Rcas_0416 transketolase; transketolase 1480271..1482301 Acidithiobacillus ferrooxidans ATCC 53993 6877497 YP_002219954.1 CDS Lferr_1523 NC_011206.1 1482484 1483104 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Protein of unknown function DUF1971; KEGG: bte:BTH_I1696 ferredoxin; hypothetical protein 1482484..1483104 Acidithiobacillus ferrooxidans ATCC 53993 6877498 YP_002219955.1 CDS Lferr_1524 NC_011206.1 1483114 1483353 D KEGG: swi:Swit_0147 hypothetical protein; hypothetical protein 1483114..1483353 Acidithiobacillus ferrooxidans ATCC 53993 6877499 YP_002219956.1 CDS Lferr_1525 NC_011206.1 1483385 1484473 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 1483385..1484473 Acidithiobacillus ferrooxidans ATCC 53993 6877500 YP_002219957.1 CDS Lferr_1527 NC_011206.1 1484740 1485708 R PFAM: HhH-GPD family protein; KEGG: scl:sce7864 putative DNA-3-methyladenine glycosidase; HhH-GPD family protein complement(1484740..1485708) Acidithiobacillus ferrooxidans ATCC 53993 6877502 YP_002219958.1 CDS Lferr_1529 NC_011206.1 1486256 1486900 R PFAM: glycosyl transferase family 2; KEGG: cte:CT1271 glycosyl transferase; family 2 glycosyl transferase complement(1486256..1486900) Acidithiobacillus ferrooxidans ATCC 53993 6877504 YP_002219959.1 CDS Lferr_1530 NC_011206.1 1487076 1487294 R hypothetical protein complement(1487076..1487294) Acidithiobacillus ferrooxidans ATCC 53993 6877505 YP_002219960.1 CDS Lferr_1531 NC_011206.1 1487304 1487501 R hypothetical protein complement(1487304..1487501) Acidithiobacillus ferrooxidans ATCC 53993 6877506 YP_002219961.1 CDS Lferr_1532 NC_011206.1 1487610 1488866 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gsu:GSU0493 pyridine nucleotide-disulphide oxidoreductase family protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1487610..1488866) Acidithiobacillus ferrooxidans ATCC 53993 6877507 YP_002219962.1 CDS Lferr_1533 NC_011206.1 1488859 1490016 R PFAM: major facilitator superfamily MFS_1; KEGG: sus:Acid_7579 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1488859..1490016) Acidithiobacillus ferrooxidans ATCC 53993 6877508 YP_002219963.1 CDS Lferr_1534 NC_011206.1 1490013 1491545 R PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: gvi:glr1163 hypothetical protein; FAD dependent oxidoreductase complement(1490013..1491545) Acidithiobacillus ferrooxidans ATCC 53993 6877509 YP_002219964.1 CDS Lferr_1535 NC_011206.1 1491535 1492320 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tac:Ta0191 probable glucose 1-dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1491535..1492320) Acidithiobacillus ferrooxidans ATCC 53993 6877510 YP_002219965.1 CDS Lferr_1536 NC_011206.1 1492317 1492859 R KEGG: bbt:BBta_p0098 putative glucoamylase precursor; hypothetical protein complement(1492317..1492859) Acidithiobacillus ferrooxidans ATCC 53993 6877511 YP_002219966.1 CDS phhB NC_011206.1 1493353 1493682 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1493353..1493682 Acidithiobacillus ferrooxidans ATCC 53993 6877512 YP_002219967.1 CDS Lferr_1538 NC_011206.1 1494237 1494461 D PFAM: Heavy metal transport/detoxification protein; KEGG: ttj:TTHA1718 heavy metal binding protein; heavy metal transport/detoxification protein 1494237..1494461 Acidithiobacillus ferrooxidans ATCC 53993 6877513 YP_002219968.1 CDS Lferr_1539 NC_011206.1 1494722 1494913 D KEGG: mxa:MXAN_2316 EF hand domain protein; EF hand domain-containing protein 1494722..1494913 Acidithiobacillus ferrooxidans ATCC 53993 6877514 YP_002219969.1 CDS Lferr_1540 NC_011206.1 1495051 1495317 D KEGG: ppf:Pput_4104 hypothetical protein; hypothetical protein 1495051..1495317 Acidithiobacillus ferrooxidans ATCC 53993 6877515 YP_002219970.1 CDS Lferr_1541 NC_011206.1 1495441 1495938 D KEGG: mka:MK1679 predicted nucletide kinase; hypothetical protein 1495441..1495938 Acidithiobacillus ferrooxidans ATCC 53993 6877516 YP_002219971.1 CDS Lferr_1542 NC_011206.1 1495939 1496358 R KEGG: gdi:GDI1906 hypothetical protein; hypothetical protein complement(1495939..1496358) Acidithiobacillus ferrooxidans ATCC 53993 6877517 YP_002219972.1 CDS Lferr_1543 NC_011206.1 1496554 1497171 D KEGG: yps:YPTB0370 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; LexA family transcriptional repressor 1496554..1497171 Acidithiobacillus ferrooxidans ATCC 53993 6877518 YP_002219973.1 CDS Lferr_1544 NC_011206.1 1497168 1497812 D KEGG: aeh:Mlg_1095 hypothetical protein; hypothetical protein 1497168..1497812 Acidithiobacillus ferrooxidans ATCC 53993 6877519 YP_002219974.1 CDS Lferr_1545 NC_011206.1 1497819 1499231 D KEGG: tbd:Tbd_0829 hypothetical protein; hypothetical protein 1497819..1499231 Acidithiobacillus ferrooxidans ATCC 53993 6877520 YP_002219975.1 CDS Lferr_1546 NC_011206.1 1499209 1502271 D KEGG: tbd:Tbd_0828 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; DNA polymerase III subunit alpha 1499209..1502271 Acidithiobacillus ferrooxidans ATCC 53993 6877521 YP_002219976.1 CDS Lferr_1547 NC_011206.1 1502428 1503279 D KEGG: tbd:Tbd_2787 disulfide isomerase/thiol-disulfide oxidase; hypothetical protein 1502428..1503279 Acidithiobacillus ferrooxidans ATCC 53993 6877522 YP_002219977.1 CDS pepN NC_011206.1 1503276 1505903 D TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: aeh:Mlg_1592 Alanyl aminopeptidase. Metallo peptidase. MEROPS family M01; aminopeptidase N 1503276..1505903 Acidithiobacillus ferrooxidans ATCC 53993 6877523 YP_002219978.1 CDS Lferr_1549 NC_011206.1 1505945 1507414 R PFAM: adenylate cyclase; KEGG: eba:ebA978 hypothetical protein; adenylate cyclase complement(1505945..1507414) Acidithiobacillus ferrooxidans ATCC 53993 6877524 YP_002219979.1 CDS Lferr_1550 NC_011206.1 1507398 1508036 R KEGG: cvi:CV_2923 probable partition-related protein; partition-like protein complement(1507398..1508036) Acidithiobacillus ferrooxidans ATCC 53993 6877525 YP_002219980.1 CDS Lferr_1551 NC_011206.1 1508049 1510154 R PFAM: Polyphosphate kinase; KEGG: noc:Noc_2388 polyphosphate kinase; polyphosphate kinase complement(1508049..1510154) Acidithiobacillus ferrooxidans ATCC 53993 6877526 YP_002219981.1 CDS Lferr_1552 NC_011206.1 1510147 1511013 R PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: pap:PSPA7_3507 5,10-methylene-tetrahydrofolate dehydrogenase / cyclohydrolase; methylenetetrahydrofolate dehydrogenase complement(1510147..1511013) Acidithiobacillus ferrooxidans ATCC 53993 6877527 YP_002219982.1 CDS Lferr_1553 NC_011206.1 1511248 1514328 R PFAM: acriflavin resistance protein; KEGG: gur:Gura_0528 acriflavin resistance protein; acriflavin resistance protein complement(1511248..1514328) Acidithiobacillus ferrooxidans ATCC 53993 6877528 YP_002219983.1 CDS Lferr_1554 NC_011206.1 1514340 1515431 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cbd:COXBU7E912_1194 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1514340..1515431) Acidithiobacillus ferrooxidans ATCC 53993 6877529 YP_002219984.1 CDS Lferr_1555 NC_011206.1 1515475 1517022 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gur:Gura_0526 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system, outer membrane lipoprotein complement(1515475..1517022) Acidithiobacillus ferrooxidans ATCC 53993 6877530 YP_002219985.1 CDS Lferr_1556 NC_011206.1 1517245 1518033 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: pnu:Pnuc_1304 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1517245..1518033 Acidithiobacillus ferrooxidans ATCC 53993 6877531 YP_002219986.1 CDS Lferr_1557 NC_011206.1 1518100 1518678 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: aav:Aave_1179 maf protein; maf protein complement(1518100..1518678) Acidithiobacillus ferrooxidans ATCC 53993 6877532 YP_002219987.1 CDS Lferr_1558 NC_011206.1 1518691 1521480 R PFAM: phosphoenolpyruvate carboxylase; KEGG: noc:Noc_0770 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(1518691..1521480) Acidithiobacillus ferrooxidans ATCC 53993 6877533 YP_002219988.1 CDS Lferr_1559 NC_011206.1 1521815 1522081 D TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: sde:Sde_2667 ubiquinone/menaquinone biosynthesis methyltransferase; RNA chaperone Hfq 1521815..1522081 Acidithiobacillus ferrooxidans ATCC 53993 6877534 YP_002219989.1 CDS Lferr_1560 NC_011206.1 1522105 1523403 D TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: csa:Csal_1278 GTP-binding protein, HSR1-related; GTP-binding proten HflX 1522105..1523403 Acidithiobacillus ferrooxidans ATCC 53993 6877535 YP_002219990.1 CDS Lferr_1561 NC_011206.1 1523418 1524611 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: noc:Noc_2588 HflK-like protein; HflK protein 1523418..1524611 Acidithiobacillus ferrooxidans ATCC 53993 6877536 YP_002219991.1 CDS Lferr_1562 NC_011206.1 1524608 1525480 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: nmu:Nmul_A0444 HflC protein; HflC protein 1524608..1525480 Acidithiobacillus ferrooxidans ATCC 53993 6877537 YP_002219992.1 CDS Lferr_1563 NC_011206.1 1525477 1526679 D PFAM: tRNA synthetase class II (G H P and S); KEGG: ppf:Pput_4766 ATP phosphoribosyltransferase regulatory subunit; tRNA synthetase class II (G H P and S) 1525477..1526679 Acidithiobacillus ferrooxidans ATCC 53993 6877538 YP_002219993.1 CDS Lferr_1564 NC_011206.1 1526722 1528017 D PFAM: adenylosuccinate synthetase; KEGG: tbd:Tbd_0607 adenylosuccinate synthetase; adenylosuccinate synthase 1526722..1528017 Acidithiobacillus ferrooxidans ATCC 53993 6877539 YP_002219994.1 CDS Lferr_1565 NC_011206.1 1528192 1530432 D KEGG: mca:MCA1976 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R 1528192..1530432 Acidithiobacillus ferrooxidans ATCC 53993 6877541 YP_002219995.1 CDS Lferr_1566 NC_011206.1 1530450 1531235 R PFAM: protein of unknown function DUF344; KEGG: pla:Plav_1864 protein of unknown function DUF344; hypothetical protein complement(1530450..1531235) Acidithiobacillus ferrooxidans ATCC 53993 6877542 YP_002219996.1 CDS Lferr_1567 NC_011206.1 1531270 1532658 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1531270..1532658) Acidithiobacillus ferrooxidans ATCC 53993 6877543 YP_002219997.1 CDS Lferr_1568 NC_011206.1 1532760 1533512 R PFAM: molybdopterin binding domain; KEGG: aeh:Mlg_1211 molybdopterin binding domain; molybdopterin binding domain-containing protein complement(1532760..1533512) Acidithiobacillus ferrooxidans ATCC 53993 6877544 YP_002219998.1 CDS Lferr_1569 NC_011206.1 1533788 1534816 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcm:Bcenmc03_2913 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(1533788..1534816) Acidithiobacillus ferrooxidans ATCC 53993 6877545 YP_002219999.1 CDS Lferr_1570 NC_011206.1 1534939 1535598 R KEGG: azo:azo3124 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; phosphoribosylglycinamide formyltransferase complement(1534939..1535598) Acidithiobacillus ferrooxidans ATCC 53993 6877546 YP_002220000.1 CDS Lferr_1571 NC_011206.1 1535935 1536963 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcm:Bcenmc03_2913 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(1535935..1536963) Acidithiobacillus ferrooxidans ATCC 53993 6877547 YP_002220001.1 CDS Lferr_1572 NC_011206.1 1537086 1537745 R KEGG: azo:azo3124 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; phosphoribosylglycinamide formyltransferase complement(1537086..1537745) Acidithiobacillus ferrooxidans ATCC 53993 6877548 YP_002220002.1 CDS Lferr_1573 NC_011206.1 1537738 1538817 R KEGG: bpt:Bpet0825 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase complement(1537738..1538817) Acidithiobacillus ferrooxidans ATCC 53993 6877549 YP_002220003.1 CDS Lferr_1574 NC_011206.1 1538920 1539537 R PFAM: manganese and iron superoxide dismutase; KEGG: det:DET0956 superoxide dismutase; manganese and iron superoxide dismutase complement(1538920..1539537) Acidithiobacillus ferrooxidans ATCC 53993 6877550 YP_002220004.1 CDS Lferr_1575 NC_011206.1 1539694 1540242 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mgm:Mmc1_2314 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 1539694..1540242 Acidithiobacillus ferrooxidans ATCC 53993 6877551 YP_002220005.1 CDS Lferr_1576 NC_011206.1 1540239 1540952 D TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: ppf:Pput_4050 DNA replication initiation factor; DnaA regulatory inactivator Hda 1540239..1540952 Acidithiobacillus ferrooxidans ATCC 53993 6877552 YP_002220006.1 CDS Lferr_1577 NC_011206.1 1540949 1541833 D PFAM: ribonuclease BN; KEGG: abo:ABO_1543 ribonuclease BN-like family protein; ribonuclease BN 1540949..1541833 Acidithiobacillus ferrooxidans ATCC 53993 6877553 YP_002220007.1 CDS Lferr_1578 NC_011206.1 1541928 1542389 D KEGG: csa:Csal_1597 protein of unknown function DUF177; hypothetical protein 1541928..1542389 Acidithiobacillus ferrooxidans ATCC 53993 6877554 YP_002220008.1 CDS rpmF NC_011206.1 1542429 1542614 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1542429..1542614 Acidithiobacillus ferrooxidans ATCC 53993 6877555 YP_002220009.1 CDS Lferr_1580 NC_011206.1 1542652 1543677 D TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: tbd:Tbd_1552 fatty acid/phospholipid synthesis protein; fatty acid/phospholipid synthesis protein PlsX 1542652..1543677 Acidithiobacillus ferrooxidans ATCC 53993 6877556 YP_002220010.1 CDS Lferr_1581 NC_011206.1 1543674 1544618 D KEGG: mfa:Mfla_1507 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 1543674..1544618 Acidithiobacillus ferrooxidans ATCC 53993 6877557 YP_002220011.1 CDS Lferr_1582 NC_011206.1 1544657 1545592 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: ssn:SSON_1112 malonyl-CoA-[acyl-carrier-protein] transacylase; malonyl CoA-acyl carrier protein transacylase 1544657..1545592 Acidithiobacillus ferrooxidans ATCC 53993 6877558 YP_002220012.1 CDS Lferr_1583 NC_011206.1 1545592 1546341 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azo:azo1625 3-ketoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 1545592..1546341 Acidithiobacillus ferrooxidans ATCC 53993 6877559 YP_002220013.1 CDS acpP NC_011206.1 1546426 1546674 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1546426..1546674 Acidithiobacillus ferrooxidans ATCC 53993 6877560 YP_002220014.1 CDS Lferr_1585 NC_011206.1 1546711 1547952 D TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: eba:ebA5459 beta-ketoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl-carrier-protein) synthase 2 1546711..1547952 Acidithiobacillus ferrooxidans ATCC 53993 6877561 YP_002220015.1 CDS Lferr_1586 NC_011206.1 1547982 1548815 D KEGG: aeh:Mlg_1418 aminodeoxychorismate lyase apoprotein; TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV; aminodeoxychorismate lyase 1547982..1548815 Acidithiobacillus ferrooxidans ATCC 53993 6877562 YP_002220016.1 CDS Lferr_1587 NC_011206.1 1548827 1549825 D PFAM: aminodeoxychorismate lyase; KEGG: azo:azo1594 hypothetical protein; aminodeoxychorismate lyase 1548827..1549825 Acidithiobacillus ferrooxidans ATCC 53993 6877563 YP_002220017.1 CDS Lferr_1588 NC_011206.1 1549822 1550466 D PFAM: thymidylate kinase; KEGG: eba:ebA5415 thymidylate kinase; dTMP kinase 1549822..1550466 Acidithiobacillus ferrooxidans ATCC 53993 6877564 YP_002220018.1 CDS Lferr_1589 NC_011206.1 1550463 1551464 D KEGG: mca:MCA1995 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase 1550463..1551464 Acidithiobacillus ferrooxidans ATCC 53993 6877565 YP_002220019.1 CDS Lferr_1590 NC_011206.1 1551448 1551804 D PFAM: type IV pilus assembly PilZ; KEGG: xom:XOO_0812 type IV fimbriae assembly protein; type IV pilus assembly PilZ 1551448..1551804 Acidithiobacillus ferrooxidans ATCC 53993 6877566 YP_002220020.1 CDS Lferr_1591 NC_011206.1 1552154 1553872 D KEGG: mca:MCA1328 DNA polymerase III, gamma and tau subunits, programmed frameshift; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 1552154..1553872 Acidithiobacillus ferrooxidans ATCC 53993 6877569 YP_002220021.1 CDS Lferr_1592 NC_011206.1 1553892 1554215 D PFAM: conserved hypothetical protein; KEGG: ilo:IL1848 hypothetical protein; hypothetical protein 1553892..1554215 Acidithiobacillus ferrooxidans ATCC 53993 6877570 YP_002220022.1 CDS recR NC_011206.1 1554222 1554821 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1554222..1554821 Acidithiobacillus ferrooxidans ATCC 53993 6877571 YP_002220023.1 CDS Lferr_1594 NC_011206.1 1554881 1556098 D PFAM: Rh family protein/ammonium transporter; KEGG: tbd:Tbd_1701 putative ammonium transporter; Rh family protein/ammonium transporter 1554881..1556098 Acidithiobacillus ferrooxidans ATCC 53993 6877572 YP_002220024.1 CDS Lferr_1595 NC_011206.1 1556101 1556952 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: ppw:PputW619_4690 carbohydrate kinase, YjeF related protein; carbohydrate kinase 1556101..1556952 Acidithiobacillus ferrooxidans ATCC 53993 6877573 YP_002220025.1 CDS Lferr_1596 NC_011206.1 1556939 1558288 D TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: aae:aq_170 DapA aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1556939..1558288 Acidithiobacillus ferrooxidans ATCC 53993 6877574 YP_002220026.1 CDS Lferr_1597 NC_011206.1 1558288 1558743 D PFAM: CBS domain containing protein; KEGG: mgm:Mmc1_0960 CBS domain containing membrane protein; hypothetical protein 1558288..1558743 Acidithiobacillus ferrooxidans ATCC 53993 6877575 YP_002220027.1 CDS Lferr_1598 NC_011206.1 1558756 1559241 D PFAM: protein of unknown function UPF0079; KEGG: hch:HCH_05388 predicted ATPase or kinase; hypothetical protein 1558756..1559241 Acidithiobacillus ferrooxidans ATCC 53993 6877576 YP_002220028.1 CDS Lferr_1599 NC_011206.1 1559231 1561018 D TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: pfo:Pfl_0521 DNA mismatch repair protein; DNA mismatch repair protein MutL 1559231..1561018 Acidithiobacillus ferrooxidans ATCC 53993 6877577 YP_002220029.1 CDS Lferr_1600 NC_011206.1 1561015 1561962 D KEGG: aeh:Mlg_0572 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1561015..1561962 Acidithiobacillus ferrooxidans ATCC 53993 6877578 YP_002220030.1 CDS ndk NC_011206.1 1562122 1562547 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1562122..1562547 Acidithiobacillus ferrooxidans ATCC 53993 6877579 YP_002220031.1 CDS Lferr_1602 NC_011206.1 1562548 1563639 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: noc:Noc_0900 conserved hypothetical protein 48; radical SAM enzyme, Cfr family 1562548..1563639 Acidithiobacillus ferrooxidans ATCC 53993 6877580 YP_002220032.1 CDS Lferr_1603 NC_011206.1 1563714 1564481 D KEGG: mfa:Mfla_1622 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1563714..1564481 Acidithiobacillus ferrooxidans ATCC 53993 6877581 YP_002220033.1 CDS Lferr_1604 NC_011206.1 1564493 1565473 D SMART: helix-turn-helix domain protein; KEGG: azo:azo0926 transcriptional regulator; XRE family transcriptional regulator 1564493..1565473 Acidithiobacillus ferrooxidans ATCC 53993 6877582 YP_002220034.1 CDS Lferr_1605 NC_011206.1 1565463 1566563 D KEGG: csa:Csal_2854 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1565463..1566563 Acidithiobacillus ferrooxidans ATCC 53993 6877583 YP_002220035.1 CDS Lferr_1606 NC_011206.1 1566599 1567918 D KEGG: stm:STM2522 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 1566599..1567918 Acidithiobacillus ferrooxidans ATCC 53993 6877584 YP_002220036.1 CDS Lferr_1607 NC_011206.1 1567915 1568526 D KEGG: noc:Noc_0820 hypothetical protein; hypothetical protein 1567915..1568526 Acidithiobacillus ferrooxidans ATCC 53993 6877585 YP_002220037.1 CDS Lferr_1608 NC_011206.1 1568523 1569710 D TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: lpc:LPC_0963 PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; outer membrane assembly lipoprotein YfgL 1568523..1569710 Acidithiobacillus ferrooxidans ATCC 53993 6877586 YP_002220038.1 CDS engA NC_011206.1 1569722 1571071 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1569722..1571071 Acidithiobacillus ferrooxidans ATCC 53993 6877587 YP_002220039.1 CDS Lferr_1610 NC_011206.1 1571072 1571467 D hypothetical protein 1571072..1571467 Acidithiobacillus ferrooxidans ATCC 53993 6877588 YP_002220040.1 CDS Lferr_1611 NC_011206.1 1571650 1572738 D TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: acr:Acry_1915 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate ABC transporter substrate-binding protein 1571650..1572738 Acidithiobacillus ferrooxidans ATCC 53993 6877589 YP_002220041.1 CDS Lferr_1612 NC_011206.1 1572863 1573819 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acr:Acry_1916 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease 1572863..1573819 Acidithiobacillus ferrooxidans ATCC 53993 6877590 YP_002220042.1 CDS Lferr_1613 NC_011206.1 1573819 1574730 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acr:Acry_1917 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease 1573819..1574730 Acidithiobacillus ferrooxidans ATCC 53993 6877591 YP_002220043.1 CDS Lferr_1614 NC_011206.1 1574751 1575515 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ade:Adeh_3512 hemerythrin HHE cation binding protein; Hemerythrin HHE cation-binding domain-containing protein complement(1574751..1575515) Acidithiobacillus ferrooxidans ATCC 53993 6877592 YP_002220044.1 CDS Lferr_1615 NC_011206.1 1576064 1576600 D KEGG: tbd:Tbd_2787 disulfide isomerase/thiol-disulfide oxidase; disulfide isomerase/thiol-disulfide oxidase 1576064..1576600 Acidithiobacillus ferrooxidans ATCC 53993 6877593 YP_002220045.1 CDS Lferr_1616 NC_011206.1 1576741 1577499 D PFAM: protein of unknown function DUF81; KEGG: pca:Pcar_3013 hypothetical protein; hypothetical protein 1576741..1577499 Acidithiobacillus ferrooxidans ATCC 53993 6877594 YP_002220046.1 CDS Lferr_1617 NC_011206.1 1577778 1580888 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: mmr:Mmar10_0178 putative cation efflux system transmembrane protein; CzcA family heavy metal efflux pump complement(1577778..1580888) Acidithiobacillus ferrooxidans ATCC 53993 6877596 YP_002220047.1 CDS Lferr_1618 NC_011206.1 1580881 1582200 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: hch:HCH_03019 membrane-fusion protein; RND family efflux transporter MFP subunit complement(1580881..1582200) Acidithiobacillus ferrooxidans ATCC 53993 6877597 YP_002220048.1 CDS Lferr_1619 NC_011206.1 1582197 1583480 R PFAM: outer membrane efflux protein; KEGG: lpc:LPC_2241 hypothetical protein; outer membrane efflux protein complement(1582197..1583480) Acidithiobacillus ferrooxidans ATCC 53993 6877598 YP_002220049.1 CDS Lferr_1620 NC_011206.1 1584168 1584635 R PFAM: PEBP family protein; KEGG: reh:H16_B1117 phospholipid-binding protein; PEBP family protein complement(1584168..1584635) Acidithiobacillus ferrooxidans ATCC 53993 6877599 YP_002220050.1 CDS Lferr_1621 NC_011206.1 1585275 1586132 D KEGG: mae:Maeo_0891 hypothetical protein; hypothetical protein 1585275..1586132 Acidithiobacillus ferrooxidans ATCC 53993 6877600 YP_002220051.1 CDS Lferr_1622 NC_011206.1 1586347 1586562 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: har:HEAR2899 4Fe-4S ferredoxin-type protein; 4Fe-4S ferredoxin 1586347..1586562 Acidithiobacillus ferrooxidans ATCC 53993 6877601 YP_002220052.1 CDS Lferr_1623 NC_011206.1 1586742 1587167 R PFAM: ferric-uptake regulator; KEGG: tbd:Tbd_1714 possible ferric uptake regulator (FUR) family; Fur family ferric uptake regulator complement(1586742..1587167) Acidithiobacillus ferrooxidans ATCC 53993 6877603 YP_002220053.1 CDS Lferr_1624 NC_011206.1 1587234 1588325 R PFAM: FAD dependent oxidoreductase; KEGG: noc:Noc_2269 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1587234..1588325) Acidithiobacillus ferrooxidans ATCC 53993 6877604 YP_002220054.1 CDS Lferr_1625 NC_011206.1 1588342 1591896 R PFAM: protein of unknown function DUF490; KEGG: gme:Gmet_2809 protein of unknown function DUF490; hypothetical protein complement(1588342..1591896) Acidithiobacillus ferrooxidans ATCC 53993 6877605 YP_002220055.1 CDS Lferr_1626 NC_011206.1 1591893 1593749 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pca:Pcar_0188 hypothetical protein; surface antigen (D15) complement(1591893..1593749) Acidithiobacillus ferrooxidans ATCC 53993 6877606 YP_002220056.1 CDS Lferr_1627 NC_011206.1 1593930 1594193 R hypothetical protein complement(1593930..1594193) Acidithiobacillus ferrooxidans ATCC 53993 6877607 YP_002220057.1 CDS Lferr_1628 NC_011206.1 1594299 1595801 R KEGG: sus:Acid_1026 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(1594299..1595801) Acidithiobacillus ferrooxidans ATCC 53993 6877608 YP_002220058.1 CDS Lferr_1629 NC_011206.1 1595835 1597073 R PFAM: major facilitator superfamily MFS_1; KEGG: scl:sce2060 hypothetical protein; major facilitator superfamily protein complement(1595835..1597073) Acidithiobacillus ferrooxidans ATCC 53993 6877609 YP_002220059.1 CDS Lferr_1630 NC_011206.1 1597133 1597633 R PFAM: cytochrome c class I; KEGG: dar:Daro_3321 cytochrome c, class I; cytochrome c class I complement(1597133..1597633) Acidithiobacillus ferrooxidans ATCC 53993 6877610 YP_002220060.1 CDS Lferr_1631 NC_011206.1 1597708 1597965 R KEGG: stp:Strop_1435 hypothetical protein; hypothetical protein complement(1597708..1597965) Acidithiobacillus ferrooxidans ATCC 53993 6877611 YP_002220061.1 CDS Lferr_1632 NC_011206.1 1598231 1599355 D PFAM: fatty acid desaturase; KEGG: lil:LA0502 fatty acid desaturase; fatty acid desaturase 1598231..1599355 Acidithiobacillus ferrooxidans ATCC 53993 6877612 YP_002220062.1 CDS Lferr_1633 NC_011206.1 1599414 1599818 R KEGG: chu:CHU_2230 hypothetical protein; hypothetical protein complement(1599414..1599818) Acidithiobacillus ferrooxidans ATCC 53993 6877613 YP_002220063.1 CDS Lferr_1634 NC_011206.1 1599853 1600878 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sat:SYN_01112 UDP-N-acetylglucosamine 4-epimerase; NAD-dependent epimerase/dehydratase complement(1599853..1600878) Acidithiobacillus ferrooxidans ATCC 53993 6877614 YP_002220064.1 CDS Lferr_1635 NC_011206.1 1600854 1601843 R TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: tbd:Tbd_0963 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase complement(1600854..1601843) Acidithiobacillus ferrooxidans ATCC 53993 6877615 YP_002220065.1 CDS Lferr_1636 NC_011206.1 1602002 1603987 D PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: tbd:Tbd_0539 monovalent cation:H+ antiporter-2, CPA2 family; sodium/hydrogen exchanger 1602002..1603987 Acidithiobacillus ferrooxidans ATCC 53993 6877616 YP_002220066.1 CDS Lferr_1637 NC_011206.1 1604083 1606050 D TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_0873 acetyl-CoA synthetase; acetate/CoA ligase 1604083..1606050 Acidithiobacillus ferrooxidans ATCC 53993 6877617 YP_002220067.1 CDS Lferr_1638 NC_011206.1 1606221 1608821 R KEGG: aeh:Mlg_2558 ATPase AAA-2 domain protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB complement(1606221..1608821) Acidithiobacillus ferrooxidans ATCC 53993 6877618 YP_002220068.1 CDS Lferr_1639 NC_011206.1 1608861 1610024 R PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: aeh:Mlg_1227 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1608861..1610024) Acidithiobacillus ferrooxidans ATCC 53993 6877619 YP_002220069.1 CDS Lferr_1640 NC_011206.1 1610028 1611119 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1610028..1611119) Acidithiobacillus ferrooxidans ATCC 53993 6877620 YP_002220070.1 CDS Lferr_1641 NC_011206.1 1611123 1611917 R PFAM: protein of unknown function DUF198; KEGG: noc:Noc_2039 protein of unknown function DUF198; hypothetical protein complement(1611123..1611917) Acidithiobacillus ferrooxidans ATCC 53993 6877621 YP_002220071.1 CDS Lferr_1642 NC_011206.1 1611959 1613833 R TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: dar:Daro_3061 1-deoxy-D-xylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase complement(1611959..1613833) Acidithiobacillus ferrooxidans ATCC 53993 6877622 YP_002220072.1 CDS Lferr_1643 NC_011206.1 1613830 1614750 R PFAM: Polyprenyl synthetase; KEGG: mca:MCA0818 geranyltranstransferase; polyprenyl synthetase complement(1613830..1614750) Acidithiobacillus ferrooxidans ATCC 53993 6877623 YP_002220073.1 CDS Lferr_1644 NC_011206.1 1614747 1614995 R TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: ent:Ent638_0889 exodeoxyribonuclease VII small subunit; exodeoxyribonuclease VII small subunit complement(1614747..1614995) Acidithiobacillus ferrooxidans ATCC 53993 6877624 YP_002220074.1 CDS Lferr_1645 NC_011206.1 1615127 1616338 D PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_1422 major facilitator superfamily MFS_1; major facilitator superfamily protein 1615127..1616338 Acidithiobacillus ferrooxidans ATCC 53993 6877625 YP_002220075.1 CDS Lferr_1646 NC_011206.1 1616459 1617286 D TIGRFAM: TonB family protein; KEGG: psa:PST_3955 TonB protein, C-terminal domain; TonB family protein 1616459..1617286 Acidithiobacillus ferrooxidans ATCC 53993 6877626 YP_002220076.1 CDS Lferr_1647 NC_011206.1 1617338 1617709 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tbd:Tbd_0223 thioredoxin; thioredoxin complement(1617338..1617709) Acidithiobacillus ferrooxidans ATCC 53993 6877627 YP_002220077.1 CDS Lferr_1648 NC_011206.1 1617860 1619200 D KEGG: maq:Maqu_1729 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 1617860..1619200 Acidithiobacillus ferrooxidans ATCC 53993 6877628 YP_002220078.1 CDS Lferr_1649 NC_011206.1 1619308 1620768 R PFAM: Pyrrolo-quinoline quinone; KEGG: sto:ST2402 hypothetical outer membrane protein; pyrrolo-quinoline quinone complement(1619308..1620768) Acidithiobacillus ferrooxidans ATCC 53993 6877629 YP_002220079.1 CDS Lferr_1650 NC_011206.1 1620838 1621284 R KEGG: mes:Meso_1398 hypothetical protein; hypothetical protein complement(1620838..1621284) Acidithiobacillus ferrooxidans ATCC 53993 6877630 YP_002220080.1 CDS Lferr_1651 NC_011206.1 1621478 1621615 R hypothetical protein complement(1621478..1621615) Acidithiobacillus ferrooxidans ATCC 53993 6877631 YP_002220081.1 CDS Lferr_1652 NC_011206.1 1621748 1621918 D hypothetical protein 1621748..1621918 Acidithiobacillus ferrooxidans ATCC 53993 6877632 YP_002220082.1 CDS Lferr_1653 NC_011206.1 1621905 1622048 D hypothetical protein 1621905..1622048 Acidithiobacillus ferrooxidans ATCC 53993 6877633 YP_002220083.1 CDS Lferr_1654 NC_011206.1 1622027 1622203 D hypothetical protein 1622027..1622203 Acidithiobacillus ferrooxidans ATCC 53993 6877634 YP_002220084.1 CDS Lferr_1655 NC_011206.1 1622345 1622857 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: shn:Shewana3_2665 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1622345..1622857 Acidithiobacillus ferrooxidans ATCC 53993 6877635 YP_002220085.1 CDS Lferr_1656 NC_011206.1 1622862 1623635 D TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: mfa:Mfla_0495 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase 1622862..1623635 Acidithiobacillus ferrooxidans ATCC 53993 6877636 YP_002220086.1 CDS Lferr_1657 NC_011206.1 1623667 1626150 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: azo:azo3149 putative cation-transporting P-type ATPase; HAD superfamily P-type ATPase 1623667..1626150 Acidithiobacillus ferrooxidans ATCC 53993 6877637 YP_002220087.1 CDS Lferr_1658 NC_011206.1 1626240 1627943 R TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: maq:Maqu_1732 2-isopropylmalate synthase; 2-isopropylmalate synthase complement(1626240..1627943) Acidithiobacillus ferrooxidans ATCC 53993 6877638 YP_002220088.1 CDS Lferr_1659 NC_011206.1 1628085 1628570 D PFAM: regulatory protein AsnC/Lrp family; KEGG: hch:HCH_05144 transcriptional regulator; asnC family transcriptional regulator 1628085..1628570 Acidithiobacillus ferrooxidans ATCC 53993 6877639 YP_002220089.1 CDS Lferr_1660 NC_011206.1 1628703 1629989 R PFAM: outer membrane porin; KEGG: acr:Acry_0114 hypothetical protein; outer membrane porin complement(1628703..1629989) Acidithiobacillus ferrooxidans ATCC 53993 6877640 YP_002220090.1 CDS Lferr_1661 NC_011206.1 1630068 1631270 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: pfo:Pfl_1664 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(1630068..1631270) Acidithiobacillus ferrooxidans ATCC 53993 6877641 YP_002220091.1 CDS Lferr_1662 NC_011206.1 1631393 1632298 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppg:PputGB1_2243 transcriptional regulator, LysR family; LysR family transcriptional regulator 1631393..1632298 Acidithiobacillus ferrooxidans ATCC 53993 6877642 YP_002220092.1 CDS Lferr_1663 NC_011206.1 1632496 1633167 R TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: bcm:Bcenmc03_2717 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(1632496..1633167) Acidithiobacillus ferrooxidans ATCC 53993 6877643 YP_002220093.1 CDS Lferr_1664 NC_011206.1 1633727 1634440 R PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: aby:ABAYE3758 putative autoinducer-binding transcriptional regulator (LuxR family); LuxR family transcriptional regulator complement(1633727..1634440) Acidithiobacillus ferrooxidans ATCC 53993 6877644 YP_002220094.1 CDS Lferr_1665 NC_011206.1 1634650 1635033 D KEGG: aby:ABAYE3760 hypothetical protein; hypothetical protein 1634650..1635033 Acidithiobacillus ferrooxidans ATCC 53993 6877645 YP_002220095.1 CDS Lferr_1666 NC_011206.1 1635117 1635668 D PFAM: autoinducer synthesis protein; KEGG: aby:ABAYE3761 N-acylhomoserine lactone synthase, autoinducer synthesis protein; autoinducer synthesis protein 1635117..1635668 Acidithiobacillus ferrooxidans ATCC 53993 6877646 YP_002220096.1 CDS Lferr_1667 NC_011206.1 1635860 1636018 D hypothetical protein 1635860..1636018 Acidithiobacillus ferrooxidans ATCC 53993 6877647 YP_002220097.1 CDS Lferr_1668 NC_011206.1 1636219 1636560 R PFAM: protein of unknown function DUF55; KEGG: ret:RHE_CH00838 hypothetical protein; hypothetical protein complement(1636219..1636560) Acidithiobacillus ferrooxidans ATCC 53993 6877648 YP_002220098.1 CDS Lferr_1669 NC_011206.1 1636644 1636928 R KEGG: mlo:mll3207 hypothetical protein; hypothetical protein complement(1636644..1636928) Acidithiobacillus ferrooxidans ATCC 53993 6877649 YP_002220099.1 CDS Lferr_1670 NC_011206.1 1637055 1637435 R KEGG: bpt:Bpet0790 ABC transporter, ATP-binding protein; hypothetical protein complement(1637055..1637435) Acidithiobacillus ferrooxidans ATCC 53993 6877650 YP_002220100.1 CDS Lferr_1671 NC_011206.1 1637488 1637943 R PFAM: GCN5-related N-acetyltransferase; KEGG: gfo:GFO_0419 GNAT family acetyltransferase; N-acetyltransferase GCN5 complement(1637488..1637943) Acidithiobacillus ferrooxidans ATCC 53993 6877651 YP_002220101.1 CDS Lferr_1672 NC_011206.1 1637971 1638657 R PFAM: ThiJ/PfpI domain protein; KEGG: bam:Bamb_2705 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein complement(1637971..1638657) Acidithiobacillus ferrooxidans ATCC 53993 6877652 YP_002220102.1 CDS Lferr_1673 NC_011206.1 1638654 1639313 R PFAM: Negative transcriptional regulator; KEGG: hau:Haur_4597 FMN-binding negative transcriptional regulator; FMN-binding negative transcriptional regulator complement(1638654..1639313) Acidithiobacillus ferrooxidans ATCC 53993 6877653 YP_002220103.1 CDS Lferr_1674 NC_011206.1 1639327 1639974 R KEGG: rba:RB82 conserved hypothetical protein-putative cysteine protease; cysteine protease complement(1639327..1639974) Acidithiobacillus ferrooxidans ATCC 53993 6877654 YP_002220104.1 CDS Lferr_1675 NC_011206.1 1639985 1640479 R KEGG: cvi:CV_1605 hypothetical protein; hypothetical protein complement(1639985..1640479) Acidithiobacillus ferrooxidans ATCC 53993 6877655 YP_002220105.1 CDS Lferr_1676 NC_011206.1 1640573 1641130 R KEGG: bcm:Bcenmc03_6538 hypothetical protein; hypothetical protein complement(1640573..1641130) Acidithiobacillus ferrooxidans ATCC 53993 6877656 YP_002220106.1 CDS Lferr_1677 NC_011206.1 1641239 1641850 R PFAM: regulatory protein TetR; KEGG: rpa:RPA3696 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1641239..1641850) Acidithiobacillus ferrooxidans ATCC 53993 6877657 YP_002220107.1 CDS Lferr_1678 NC_011206.1 1641925 1642281 D KEGG: gbe:GbCGDNIH1_2412 hypothetical protein; hypothetical protein 1641925..1642281 Acidithiobacillus ferrooxidans ATCC 53993 6877658 YP_002220108.1 CDS Lferr_1679 NC_011206.1 1642286 1642759 R PFAM: regulatory protein MarR; KEGG: reu:Reut_A3276 regulatory protein, MarR; marR family transcriptional regulator complement(1642286..1642759) Acidithiobacillus ferrooxidans ATCC 53993 6877659 YP_002220109.1 CDS Lferr_1680 NC_011206.1 1642827 1643306 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: reu:Reut_A3275 alkylhydroperoxidase AhpD core; AhpD family alkylhydroperoxidase-like protein 1642827..1643306 Acidithiobacillus ferrooxidans ATCC 53993 6877660 YP_002220110.1 CDS Lferr_1681 NC_011206.1 1643303 1643788 D PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_A3274 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1643303..1643788 Acidithiobacillus ferrooxidans ATCC 53993 6877661 YP_002220111.1 CDS Lferr_1682 NC_011206.1 1644051 1644785 R PFAM: PspA/IM30 family protein; KEGG: hma:rrnAC3467 transcription regulator; phage shock protein A, PspA complement(1644051..1644785) Acidithiobacillus ferrooxidans ATCC 53993 6877663 YP_002220112.1 CDS Lferr_1683 NC_011206.1 1644825 1645649 R KEGG: mbb:BCG_1803c hypothetical protein; hypothetical protein complement(1644825..1645649) Acidithiobacillus ferrooxidans ATCC 53993 6877664 YP_002220113.1 CDS Lferr_1684 NC_011206.1 1645646 1646623 R KEGG: mbb:BCG_1803c hypothetical protein; hypothetical protein complement(1645646..1646623) Acidithiobacillus ferrooxidans ATCC 53993 6877665 YP_002220114.1 CDS Lferr_1685 NC_011206.1 1646639 1647019 R hypothetical protein complement(1646639..1647019) Acidithiobacillus ferrooxidans ATCC 53993 6877666 YP_002220115.1 CDS Lferr_1686 NC_011206.1 1647171 1649606 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xcv:XCV2336 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase complement(1647171..1649606) Acidithiobacillus ferrooxidans ATCC 53993 6877667 YP_002220116.1 CDS Lferr_1687 NC_011206.1 1649824 1651005 D PFAM: aminotransferase class I and II; KEGG: noc:Noc_1138 aminotransferase, class I and II; class I/II aminotransferase 1649824..1651005 Acidithiobacillus ferrooxidans ATCC 53993 6877668 YP_002220117.1 CDS Lferr_1688 NC_011206.1 1651051 1652235 R KEGG: bpd:BURPS668_1188 phosphoribosylglycinamide formyltransferase 2; TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide formyltransferase 2 complement(1651051..1652235) Acidithiobacillus ferrooxidans ATCC 53993 6877669 YP_002220118.1 CDS Lferr_1689 NC_011206.1 1652335 1653255 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 1652335..1653255 Acidithiobacillus ferrooxidans ATCC 53993 6877670 YP_002220119.1 CDS Lferr_1690 NC_011206.1 1653256 1654719 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1653256..1654719 Acidithiobacillus ferrooxidans ATCC 53993 6877671 YP_002220120.1 CDS Lferr_1691 NC_011206.1 1654988 1655281 D PFAM: regulatory protein ArsR; KEGG: azo:azo2809 putative transcriptional activator, ArsR family; arsR family transcriptional regulator 1654988..1655281 Acidithiobacillus ferrooxidans ATCC 53993 6877672 YP_002220121.1 CDS Lferr_1692 NC_011206.1 1655284 1656261 R PFAM: dihydrouridine synthase DuS; KEGG: mpt:Mpe_A1916 tRNA-dihydrouridine synthase A; dihydrouridine synthase complement(1655284..1656261) Acidithiobacillus ferrooxidans ATCC 53993 6877673 YP_002220122.1 CDS Lferr_1693 NC_011206.1 1656314 1658719 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(1656314..1658719) Acidithiobacillus ferrooxidans ATCC 53993 6877674 YP_002220123.1 CDS Lferr_1694 NC_011206.1 1658737 1660707 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(1658737..1660707) Acidithiobacillus ferrooxidans ATCC 53993 6877675 YP_002220124.1 CDS Lferr_1695 NC_011206.1 1660996 1662303 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cte:CT0195 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1660996..1662303) Acidithiobacillus ferrooxidans ATCC 53993 6877676 YP_002220125.1 CDS Lferr_1696 NC_011206.1 1662300 1662962 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cte:CT0194 DNA-binding response regulator; winged helix family two component transcriptional regulator complement(1662300..1662962) Acidithiobacillus ferrooxidans ATCC 53993 6877677 YP_002220126.1 CDS Lferr_1697 NC_011206.1 1663040 1663351 R PFAM: Propeptide PepSY amd peptidase M4; KEGG: mfa:Mfla_1052 propeptide, PepSY amd peptidase M4; propeptide PepSY amd peptidase M4 complement(1663040..1663351) Acidithiobacillus ferrooxidans ATCC 53993 6877678 YP_002220127.1 CDS Lferr_1698 NC_011206.1 1663547 1664623 R KEGG: bpd:BURPS668_A0079 hypothetical protein; hypothetical protein complement(1663547..1664623) Acidithiobacillus ferrooxidans ATCC 53993 6877679 YP_002220128.1 CDS Lferr_1699 NC_011206.1 1664666 1667692 R PFAM: acriflavin resistance protein; KEGG: mca:MCA1935 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(1664666..1667692) Acidithiobacillus ferrooxidans ATCC 53993 6877680 YP_002220129.1 CDS Lferr_1700 NC_011206.1 1667692 1668732 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: mca:MCA1936 transporter, putative; RND family efflux transporter MFP subunit complement(1667692..1668732) Acidithiobacillus ferrooxidans ATCC 53993 6877681 YP_002220130.1 CDS Lferr_1701 NC_011206.1 1668729 1670078 R PFAM: outer membrane efflux protein; KEGG: mca:MCA1937 outer membrane efflux protein; outer membrane efflux protein complement(1668729..1670078) Acidithiobacillus ferrooxidans ATCC 53993 6877682 YP_002220131.1 CDS Lferr_1702 NC_011206.1 1670800 1673163 R PFAM: TonB-dependent receptor; KEGG: acr:Acry_0295 TonB-dependent receptor; TonB-dependent receptor complement(1670800..1673163) Acidithiobacillus ferrooxidans ATCC 53993 6877683 YP_002220132.1 CDS Lferr_1703 NC_011206.1 1673391 1674341 R hypothetical protein complement(1673391..1674341) Acidithiobacillus ferrooxidans ATCC 53993 6877684 YP_002220133.1 CDS Lferr_1704 NC_011206.1 1674471 1677569 R PFAM: acriflavin resistance protein; KEGG: mca:MCA1935 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(1674471..1677569) Acidithiobacillus ferrooxidans ATCC 53993 6877685 YP_002220134.1 CDS Lferr_1705 NC_011206.1 1677566 1678576 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bpd:BURPS668_A1580 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1677566..1678576) Acidithiobacillus ferrooxidans ATCC 53993 6877686 YP_002220135.1 CDS Lferr_1706 NC_011206.1 1678573 1679916 R PFAM: outer membrane efflux protein; KEGG: ade:Adeh_2969 outer membrane efflux protein; outer membrane efflux protein complement(1678573..1679916) Acidithiobacillus ferrooxidans ATCC 53993 6877687 YP_002220136.1 CDS Lferr_1707 NC_011206.1 1680112 1680423 R KEGG: mca:MCA2708 ATP synthase F1, gamma subunit; ATP synthase F1 subunit gamma complement(1680112..1680423) Acidithiobacillus ferrooxidans ATCC 53993 6877688 YP_002220137.1 CDS Lferr_1708 NC_011206.1 1680416 1680658 R KEGG: mca:MCA1556 F0F1 ATP synthase subunit beta; hypothetical protein complement(1680416..1680658) Acidithiobacillus ferrooxidans ATCC 53993 6877689 YP_002220138.1 CDS Lferr_1709 NC_011206.1 1680873 1681070 D hypothetical protein 1680873..1681070 Acidithiobacillus ferrooxidans ATCC 53993 6877690 YP_002220139.1 CDS Lferr_1710 NC_011206.1 1681126 1681542 D KEGG: gsu:GSU0710 hypothetical protein; hypothetical protein 1681126..1681542 Acidithiobacillus ferrooxidans ATCC 53993 6877691 YP_002220140.1 CDS Lferr_1711 NC_011206.1 1681715 1682764 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: yen:YE2274 hypothetical protein; hypothetical protein 1681715..1682764 Acidithiobacillus ferrooxidans ATCC 53993 6877692 YP_002220141.1 CDS Lferr_1712 NC_011206.1 1682860 1685307 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: acr:Acry_3376 phosphoketolase; phosphoketolase 1682860..1685307 Acidithiobacillus ferrooxidans ATCC 53993 6877693 YP_002220142.1 CDS Lferr_1713 NC_011206.1 1685394 1686176 D KEGG: yps:YPTB0838 hypothetical protein; salt-induced outer membrane protein 1685394..1686176 Acidithiobacillus ferrooxidans ATCC 53993 6877694 YP_002220143.1 CDS Lferr_1714 NC_011206.1 1686423 1687373 R TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: aeh:Mlg_1219 preprotein translocase subunit SecF; protein-export membrane protein SecF complement(1686423..1687373) Acidithiobacillus ferrooxidans ATCC 53993 6877696 YP_002220144.1 CDS Lferr_1715 NC_011206.1 1687381 1689165 R TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: mfa:Mfla_0512 protein-export membrane protein SecD; protein-export membrane protein SecD complement(1687381..1689165) Acidithiobacillus ferrooxidans ATCC 53993 6877697 YP_002220145.1 CDS Lferr_1716 NC_011206.1 1689177 1689512 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: eba:ebB40 preprotein translocase subunit YajC; preprotein translocase subunit YajC complement(1689177..1689512) Acidithiobacillus ferrooxidans ATCC 53993 6877698 YP_002220146.1 CDS Lferr_1717 NC_011206.1 1689553 1690668 R KEGG: mca:MCA0681 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase complement(1689553..1690668) Acidithiobacillus ferrooxidans ATCC 53993 6877699 YP_002220147.1 CDS queA NC_011206.1 1690665 1691702 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(1690665..1691702) Acidithiobacillus ferrooxidans ATCC 53993 6877700 YP_002220148.1 CDS Lferr_1719 NC_011206.1 1691711 1693060 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: bvi:Bcep1808_4227 protein of unknown function DUF21; hypothetical protein complement(1691711..1693060) Acidithiobacillus ferrooxidans ATCC 53993 6877701 YP_002220149.1 CDS Lferr_1720 NC_011206.1 1693075 1693668 R PFAM: CBS domain containing protein; KEGG: noc:Noc_0102 CBS domain containing protein; signal-transduction protein with CBS domains complement(1693075..1693668) Acidithiobacillus ferrooxidans ATCC 53993 6877702 YP_002220150.1 CDS Lferr_1721 NC_011206.1 1693731 1694945 R KEGG: neu:NE0700 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-succinylhomoserine sulfhydrylase complement(1693731..1694945) Acidithiobacillus ferrooxidans ATCC 53993 6877703 YP_002220151.1 CDS Lferr_1722 NC_011206.1 1694942 1696387 R TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: mgm:Mmc1_0265 amidophosphoribosyltransferase; amidophosphoribosyltransferase complement(1694942..1696387) Acidithiobacillus ferrooxidans ATCC 53993 6877704 YP_002220152.1 CDS Lferr_1723 NC_011206.1 1696377 1696874 R PFAM: Colicin V production protein; KEGG: noc:Noc_1672 colicin V production protein; colicin V production protein complement(1696377..1696874) Acidithiobacillus ferrooxidans ATCC 53993 6877705 YP_002220153.1 CDS Lferr_1724 NC_011206.1 1696871 1698160 R TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tbd:Tbd_1911 folylpolyglutamate synthetase; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(1696871..1698160) Acidithiobacillus ferrooxidans ATCC 53993 6877706 YP_002220154.1 CDS Lferr_1725 NC_011206.1 1698189 1699073 R TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: aeh:Mlg_1238 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(1698189..1699073) Acidithiobacillus ferrooxidans ATCC 53993 6877707 YP_002220155.1 CDS trpA NC_011206.1 1699070 1699888 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1699070..1699888) Acidithiobacillus ferrooxidans ATCC 53993 6877708 YP_002220156.1 CDS Lferr_1727 NC_011206.1 1699885 1701084 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1699885..1701084) Acidithiobacillus ferrooxidans ATCC 53993 6877709 YP_002220157.1 CDS Lferr_1728 NC_011206.1 1701095 1701706 R PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: pst:PSPTO_3816 N-(5'phosphoribosyl)anthranilate isomerase; phosphoribosylanthranilate isomerase complement(1701095..1701706) Acidithiobacillus ferrooxidans ATCC 53993 6877710 YP_002220158.1 CDS Lferr_1729 NC_011206.1 1701767 1702582 R KEGG: psb:Psyr_1662 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A complement(1701767..1702582) Acidithiobacillus ferrooxidans ATCC 53993 6877711 YP_002220159.1 CDS Lferr_1730 NC_011206.1 1702595 1704790 R KEGG: cvi:CV_2766 probable transmembrane protein; Tfp pilus assembly protein FimV-like protein complement(1702595..1704790) Acidithiobacillus ferrooxidans ATCC 53993 6877712 YP_002220160.1 CDS Lferr_1731 NC_011206.1 1704854 1705876 R TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: mca:MCA2062 aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase complement(1704854..1705876) Acidithiobacillus ferrooxidans ATCC 53993 6877713 YP_002220161.1 CDS Lferr_1732 NC_011206.1 1705884 1706960 R KEGG: hch:HCH_02430 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase complement(1705884..1706960) Acidithiobacillus ferrooxidans ATCC 53993 6877714 YP_002220162.1 CDS Lferr_1733 NC_011206.1 1707062 1707676 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: eba:ebA2945 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein MobA 1707062..1707676 Acidithiobacillus ferrooxidans ATCC 53993 6877715 YP_002220163.1 CDS Lferr_1734 NC_011206.1 1707673 1708167 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: cvi:CV_2533 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B 1707673..1708167 Acidithiobacillus ferrooxidans ATCC 53993 6877716 YP_002220164.1 CDS Lferr_1735 NC_011206.1 1708170 1709411 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: azo:azo2825 molybdopterin biosynthesis protein; molybdenum cofactor synthesis domain-containing protein 1708170..1709411 Acidithiobacillus ferrooxidans ATCC 53993 6877717 YP_002220165.1 CDS Lferr_1736 NC_011206.1 1709420 1710061 R KEGG: mag:amb2051 phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthase and related enzyme; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein complement(1709420..1710061) Acidithiobacillus ferrooxidans ATCC 53993 6877718 YP_002220166.1 CDS Lferr_1737 NC_011206.1 1710151 1711968 R KEGG: xft:PD2043 protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 67K type complement(1710151..1711968) Acidithiobacillus ferrooxidans ATCC 53993 6877719 YP_002220167.1 CDS Lferr_1738 NC_011206.1 1712176 1715085 R KEGG: noc:Noc_1680 (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose synthase complement(1712176..1715085) Acidithiobacillus ferrooxidans ATCC 53993 6877720 YP_002220168.1 CDS Lferr_1739 NC_011206.1 1715091 1716947 R KEGG: rxy:Rxyl_0318 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase complement(1715091..1716947) Acidithiobacillus ferrooxidans ATCC 53993 6877721 YP_002220169.1 CDS Lferr_1740 NC_011206.1 1716968 1718203 R PFAM: glycosyl transferase group 1; KEGG: sfu:Sfum_2348 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1716968..1718203) Acidithiobacillus ferrooxidans ATCC 53993 6877722 YP_002220170.1 CDS Lferr_1741 NC_011206.1 1718193 1718885 R KEGG: pca:Pcar_3110 hypothetical protein; hypothetical protein complement(1718193..1718885) Acidithiobacillus ferrooxidans ATCC 53993 6877723 YP_002220171.1 CDS Lferr_1742 NC_011206.1 1719204 1719845 R KEGG: gur:Gura_0964 dienelactone hydrolase; dienelactone hydrolase complement(1719204..1719845) Acidithiobacillus ferrooxidans ATCC 53993 6877724 YP_002220172.1 CDS Lferr_1743 NC_011206.1 1720007 1720444 R PFAM: heat shock protein Hsp20; KEGG: dps:DP1866 similar to low molecular weight heat shock protein (HSP17); heat shock protein Hsp20 complement(1720007..1720444) Acidithiobacillus ferrooxidans ATCC 53993 6877725 YP_002220173.1 CDS Lferr_1744 NC_011206.1 1720783 1721790 D TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: mxa:MXAN_0456 alcohol dehydrogenase, zinc-containing; zinc-binding alcohol dehydrogenase family protein 1720783..1721790 Acidithiobacillus ferrooxidans ATCC 53993 6877726 YP_002220174.1 CDS Lferr_1745 NC_011206.1 1722006 1722569 D KEGG: cau:Caur_0730 ErfK/YbiS/YcfS/YnhG family protein; hypothetical protein 1722006..1722569 Acidithiobacillus ferrooxidans ATCC 53993 6877727 YP_002220175.1 CDS Lferr_1746 NC_011206.1 1722892 1723833 D PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: noc:Noc_1572 peptidase M48, Ste24p; peptidase M48 Ste24p 1722892..1723833 Acidithiobacillus ferrooxidans ATCC 53993 6877728 YP_002220176.1 CDS Lferr_1747 NC_011206.1 1723938 1725467 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: spl:Spea_2190 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter 1723938..1725467 Acidithiobacillus ferrooxidans ATCC 53993 6877729 YP_002220177.1 CDS Lferr_1748 NC_011206.1 1725420 1725686 R hypothetical protein complement(1725420..1725686) Acidithiobacillus ferrooxidans ATCC 53993 6877730 YP_002220178.1 CDS Lferr_1749 NC_011206.1 1725838 1726704 R KEGG: mpt:Mpe_B0470 hypothetical protein; hypothetical protein complement(1725838..1726704) Acidithiobacillus ferrooxidans ATCC 53993 6877731 YP_002220179.1 CDS Lferr_1750 NC_011206.1 1726650 1726970 R KEGG: bxe:Bxe_C1199 hypothetical protein; hypothetical protein complement(1726650..1726970) Acidithiobacillus ferrooxidans ATCC 53993 6877732 YP_002220180.1 CDS Lferr_1752 NC_011206.1 1728132 1728998 D hypothetical protein 1728132..1728998 Acidithiobacillus ferrooxidans ATCC 53993 6877734 YP_002220181.1 CDS Lferr_1753 NC_011206.1 1729100 1730404 D PFAM: protein of unknown function DUF181; KEGG: btl:BALH_0477 hypothetical protein; hypothetical protein 1729100..1730404 Acidithiobacillus ferrooxidans ATCC 53993 6877735 YP_002220182.1 CDS Lferr_1754 NC_011206.1 1730935 1731267 D KEGG: bpt:Bpet1150 hypothetical protein; hypothetical protein 1730935..1731267 Acidithiobacillus ferrooxidans ATCC 53993 6877736 YP_002220183.1 CDS Lferr_1755 NC_011206.1 1731258 1731605 D PFAM: IS66 Orf2 family protein; KEGG: bte:BTH_I2736 TnpB protein; IS66 Orf2 family protein 1731258..1731605 Acidithiobacillus ferrooxidans ATCC 53993 6877737 YP_002220184.1 CDS Lferr_1756 NC_011206.1 1731655 1733292 D PFAM: transposase IS66; KEGG: bte:BTH_I1449 TnpC protein; transposase IS66 1731655..1733292 Acidithiobacillus ferrooxidans ATCC 53993 6877738 YP_002220185.1 CDS Lferr_1757 NC_011206.1 1733782 1734432 D hypothetical protein 1733782..1734432 Acidithiobacillus ferrooxidans ATCC 53993 6877739 YP_002220186.1 CDS Lferr_1758 NC_011206.1 1734449 1735030 D KEGG: syw:SYNW0079 hypothetical protein; hypothetical protein 1734449..1735030 Acidithiobacillus ferrooxidans ATCC 53993 6877740 YP_002220187.1 CDS Lferr_1759 NC_011206.1 1735364 1737580 D PFAM: outer membrane efflux protein; KEGG: gur:Gura_3178 hypothetical protein; outer membrane efflux protein 1735364..1737580 Acidithiobacillus ferrooxidans ATCC 53993 6877741 YP_002220188.1 CDS Lferr_1760 NC_011206.1 1737577 1738674 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: acr:Acry_0135 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1737577..1738674 Acidithiobacillus ferrooxidans ATCC 53993 6877742 YP_002220189.1 CDS Lferr_1761 NC_011206.1 1738671 1741775 D PFAM: acriflavin resistance protein; KEGG: tbd:Tbd_2319 probable RND efflux transporter; acriflavin resistance protein 1738671..1741775 Acidithiobacillus ferrooxidans ATCC 53993 6877743 YP_002220190.1 CDS Lferr_1762 NC_011206.1 1741801 1742520 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmo:Pmob_0278 ABC transporter related; ABC transporter-like protein 1741801..1742520 Acidithiobacillus ferrooxidans ATCC 53993 6877744 YP_002220191.1 CDS Lferr_1763 NC_011206.1 1742513 1743238 D KEGG: rsa:RSal33209_2914 ABC transporter permease protein; hypothetical protein 1742513..1743238 Acidithiobacillus ferrooxidans ATCC 53993 6877745 YP_002220192.1 CDS Lferr_1764 NC_011206.1 1743281 1743664 D KEGG: bca:BCE_5484 ABC transporter, permease protein, putative; hypothetical protein 1743281..1743664 Acidithiobacillus ferrooxidans ATCC 53993 6877746 YP_002220193.1 CDS Lferr_1765 NC_011206.1 1743719 1745038 D KEGG: sma:SAV256 transposase; hypothetical protein 1743719..1745038 Acidithiobacillus ferrooxidans ATCC 53993 6877747 YP_002220194.1 CDS Lferr_1766 NC_011206.1 1745160 1745474 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 1745160..1745474 Acidithiobacillus ferrooxidans ATCC 53993 6877748 YP_002220195.1 CDS Lferr_1767 NC_011206.1 1745618 1746052 D KEGG: erg:ERGA_CDS_05170 cytochrome b; hypothetical protein 1745618..1746052 Acidithiobacillus ferrooxidans ATCC 53993 6877749 YP_002220196.1 CDS Lferr_1768 NC_011206.1 1746716 1747267 D KEGG: tbd:Tbd_0976 hypothetical protein; hypothetical protein 1746716..1747267 Acidithiobacillus ferrooxidans ATCC 53993 6877750 YP_002220197.1 CDS Lferr_1769 NC_011206.1 1747344 1748780 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: aeh:Mlg_0166 aspartyl/glutamyl-tRNA amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B complement(1747344..1748780) Acidithiobacillus ferrooxidans ATCC 53993 6877751 YP_002220198.1 CDS gatA NC_011206.1 1748777 1750249 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1748777..1750249) Acidithiobacillus ferrooxidans ATCC 53993 6877752 YP_002220199.1 CDS Lferr_1771 NC_011206.1 1750259 1750546 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: ppw:PputW619_4283 glutamyl-tRNA(Gln) amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C complement(1750259..1750546) Acidithiobacillus ferrooxidans ATCC 53993 6877753 YP_002220200.1 CDS Lferr_1772 NC_011206.1 1750549 1751391 R PFAM: VacJ family lipoprotein; KEGG: bte:BTH_I3001 lipoprotein VacJ; VacJ family lipoprotein complement(1750549..1751391) Acidithiobacillus ferrooxidans ATCC 53993 6877754 YP_002220201.1 CDS Lferr_1773 NC_011206.1 1751391 1752050 R TIGRFAM: hopanoid biosynthesis associated membrane protein HpnM; PFAM: toluene tolerance family protein; KEGG: mca:MCA0806 hypothetical protein; hopanoid biosynthesis associated membrane protein HpnM complement(1751391..1752050) Acidithiobacillus ferrooxidans ATCC 53993 6877755 YP_002220202.1 CDS Lferr_1774 NC_011206.1 1752095 1753198 R TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein; KEGG: net:Neut_1576 radical SAM domain protein; hopanoid biosynthesis associated radical SAM protein HpnH complement(1752095..1753198) Acidithiobacillus ferrooxidans ATCC 53993 6877756 YP_002220203.1 CDS Lferr_1775 NC_011206.1 1753304 1754146 R KEGG: acr:Acry_0244 hypothetical protein; hypothetical protein complement(1753304..1754146) Acidithiobacillus ferrooxidans ATCC 53993 6877757 YP_002220204.1 CDS Lferr_1776 NC_011206.1 1754143 1755174 R TIGRFAM: membrane protein; KEGG: reu:Reut_B4903 hypothetical protein; hypothetical protein complement(1754143..1755174) Acidithiobacillus ferrooxidans ATCC 53993 6877758 YP_002220205.1 CDS Lferr_1777 NC_011206.1 1755161 1757863 R TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: rru:Rru_A0057 hypothetical protein; hopanoid biosynthesis associated RND transporter-like protein HpnN complement(1755161..1757863) Acidithiobacillus ferrooxidans ATCC 53993 6877759 YP_002220206.1 CDS Lferr_1778 NC_011206.1 1757844 1758719 R TIGRFAM: hopanoid biosynthesis associated protein HpnK; PFAM: YdjC family protein; KEGG: gbe:GbCGDNIH1_2400 cellobiose phosphotransferase system CelC; hopanoid biosynthesis associated protein HpnK complement(1757844..1758719) Acidithiobacillus ferrooxidans ATCC 53993 6877760 YP_002220207.1 CDS Lferr_1779 NC_011206.1 1758721 1760151 R KEGG: gox:GOX0614 putative methyltransferase; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hopanoid biosynthesis associated radical SAM protein HpnJ complement(1758721..1760151) Acidithiobacillus ferrooxidans ATCC 53993 6877761 YP_002220208.1 CDS Lferr_1780 NC_011206.1 1760148 1761308 R TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_3407 glycosyl transferase, family 2; hopanoid biosynthesis associated glycosyl transferase protein HpnI complement(1760148..1761308) Acidithiobacillus ferrooxidans ATCC 53993 6877762 YP_002220209.1 CDS Lferr_1781 NC_011206.1 1761351 1762340 R TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: mag:amb1364 nucleoside-diphosphate-sugar epimerase; hopanoid-associated sugar epimerase complement(1761351..1762340) Acidithiobacillus ferrooxidans ATCC 53993 6877763 YP_002220210.1 CDS Lferr_1782 NC_011206.1 1762337 1763050 R TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: mca:MCA0811 phosphorylase family protein; hopanoid-associated phosphorylase complement(1762337..1763050) Acidithiobacillus ferrooxidans ATCC 53993 6877764 YP_002220211.1 CDS Lferr_1783 NC_011206.1 1763032 1764963 R TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: noc:Noc_1320 terpene synthase/squalene cyclase; squalene-hopene cyclase complement(1763032..1764963) Acidithiobacillus ferrooxidans ATCC 53993 6877765 YP_002220212.1 CDS Lferr_1784 NC_011206.1 1764960 1766165 R PFAM: Squalene/phytoene synthase; KEGG: neu:NE1958 squalene and phytoene synthase; squalene synthase complement(1764960..1766165) Acidithiobacillus ferrooxidans ATCC 53993 6877766 YP_002220213.1 CDS gpsA NC_011206.1 1766162 1767196 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1766162..1767196) Acidithiobacillus ferrooxidans ATCC 53993 6877767 YP_002220214.1 CDS Lferr_1786 NC_011206.1 1767200 1767649 R TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: dar:Daro_0613 preprotein translocase subunit SecB; protein-export protein SecB complement(1767200..1767649) Acidithiobacillus ferrooxidans ATCC 53993 6877768 YP_002220215.1 CDS Lferr_1787 NC_011206.1 1768026 1768361 R hypothetical protein complement(1768026..1768361) Acidithiobacillus ferrooxidans ATCC 53993 6877770 YP_002220216.1 CDS Lferr_1788 NC_011206.1 1768380 1768790 R PFAM: PilT protein domain protein; KEGG: pen:PSEEN4876 nucleic acid binding protein, PIN domain; PilT protein domain-containing protein complement(1768380..1768790) Acidithiobacillus ferrooxidans ATCC 53993 6877771 YP_002220217.1 CDS Lferr_1789 NC_011206.1 1768787 1769017 R KEGG: pst:PSPTO_1046 virulence-associated protein, putative; virulence-associated protein complement(1768787..1769017) Acidithiobacillus ferrooxidans ATCC 53993 6877772 YP_002220218.1 CDS Lferr_1790 NC_011206.1 1769320 1770840 R PFAM: Aldehyde Dehydrogenase_; KEGG: hch:HCH_01852 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase complement(1769320..1770840) Acidithiobacillus ferrooxidans ATCC 53993 6877773 YP_002220219.1 CDS Lferr_1791 NC_011206.1 1771143 1772855 D TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: hha:Hhal_0701 prolyl-tRNA synthetase; prolyl-tRNA synthetase 1771143..1772855 Acidithiobacillus ferrooxidans ATCC 53993 6877774 YP_002220220.1 CDS Lferr_1792 NC_011206.1 1772848 1773324 D PFAM: UspA domain protein; KEGG: afw:Anae109_2436 UspA domain protein; UspA domain-containing protein 1772848..1773324 Acidithiobacillus ferrooxidans ATCC 53993 6877775 YP_002220221.1 CDS Lferr_1793 NC_011206.1 1773337 1774002 R KEGG: bte:BTH_I0376 hypothetical protein; hypothetical protein complement(1773337..1774002) Acidithiobacillus ferrooxidans ATCC 53993 6877776 YP_002220222.1 CDS Lferr_1794 NC_011206.1 1774007 1774945 R PFAM: Mammalian cell entry related domain protein; KEGG: bmu:Bmul_0405 mammalian cell entry related domain protein; mammalian cell entry domain-containing protein complement(1774007..1774945) Acidithiobacillus ferrooxidans ATCC 53993 6877777 YP_002220223.1 CDS Lferr_1795 NC_011206.1 1775097 1775750 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: tbd:Tbd_2695 putative protein-L-isoaspartate O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1775097..1775750 Acidithiobacillus ferrooxidans ATCC 53993 6877778 YP_002220224.1 CDS Lferr_1796 NC_011206.1 1775757 1776302 D PFAM: isochorismatase hydrolase; KEGG: mag:amb1386 amidase related to nicotinamidase; isochorismatase hydrolase 1775757..1776302 Acidithiobacillus ferrooxidans ATCC 53993 6877779 YP_002220225.1 CDS Lferr_1797 NC_011206.1 1776313 1778136 D PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: noc:Noc_1493 peptidase M61; peptidase M61 domain-containing protein 1776313..1778136 Acidithiobacillus ferrooxidans ATCC 53993 6877780 YP_002220226.1 CDS Lferr_1798 NC_011206.1 1778139 1778942 R PFAM: metallophosphoesterase; KEGG: mta:Moth_1083 hypothetical protein; metallophosphoesterase complement(1778139..1778942) Acidithiobacillus ferrooxidans ATCC 53993 6877781 YP_002220227.1 CDS Lferr_1799 NC_011206.1 1778939 1779466 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: tbd:Tbd_2724 5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase complement(1778939..1779466) Acidithiobacillus ferrooxidans ATCC 53993 6877782 YP_002220228.1 CDS Lferr_1800 NC_011206.1 1779745 1780059 R PFAM: protein of unknown function DUF710; KEGG: reh:H16_A2974 hypothetical protein; hypothetical protein complement(1779745..1780059) Acidithiobacillus ferrooxidans ATCC 53993 6877784 YP_002220229.1 CDS Lferr_1801 NC_011206.1 1780087 1780323 R hypothetical protein complement(1780087..1780323) Acidithiobacillus ferrooxidans ATCC 53993 6877785 YP_002220230.1 CDS Lferr_1802 NC_011206.1 1780411 1782321 D KEGG: mca:MCA0103 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 1780411..1782321 Acidithiobacillus ferrooxidans ATCC 53993 6877786 YP_002220231.1 CDS Lferr_1803 NC_011206.1 1782334 1782942 D TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: pmy:Pmen_1054 50S ribosomal protein L25/general stress protein Ctc; ribosomal 5S rRNA E-loop-binding protein Ctc/L25/TL5 1782334..1782942 Acidithiobacillus ferrooxidans ATCC 53993 6877787 YP_002220232.1 CDS Lferr_1804 NC_011206.1 1782949 1783518 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1782949..1783518 Acidithiobacillus ferrooxidans ATCC 53993 6877788 YP_002220233.1 CDS Lferr_1805 NC_011206.1 1783528 1784619 D TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: mms:mma_3131 hypothetical protein; GTP-binding protein YchF 1783528..1784619 Acidithiobacillus ferrooxidans ATCC 53993 6877789 YP_002220234.1 CDS Lferr_1806 NC_011206.1 1784677 1785222 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: cau:Caur_2153 cupin 2 conserved barrel domain protein; XRE family transcriptional regulator 1784677..1785222 Acidithiobacillus ferrooxidans ATCC 53993 6877790 YP_002220235.1 CDS Lferr_1807 NC_011206.1 1785219 1787201 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rfr:Rfer_3292 hydrogenase 4 subunit B; hydrogenase 4 subunit B 1785219..1787201 Acidithiobacillus ferrooxidans ATCC 53993 6877791 YP_002220236.1 CDS Lferr_1808 NC_011206.1 1787198 1788139 D KEGG: eba:ebA4192 formate hydrogenlyase membrane subunit subunit HyfD; formate hydrogenlyase membrane subunit HyfD 1787198..1788139 Acidithiobacillus ferrooxidans ATCC 53993 6877792 YP_002220237.1 CDS Lferr_1809 NC_011206.1 1788141 1788818 D KEGG: eba:ebA4191 hydrogenase 4 membrane component; hydrogenase 4 membrane component 1788141..1788818 Acidithiobacillus ferrooxidans ATCC 53993 6877793 YP_002220238.1 CDS Lferr_1810 NC_011206.1 1788818 1790272 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: eba:ebA4190 hydrogenase 4 subunit F; hydrogenase 4 subunit F 1788818..1790272 Acidithiobacillus ferrooxidans ATCC 53993 6877794 YP_002220239.1 CDS Lferr_1811 NC_011206.1 1790283 1791830 D PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: eba:ebA4187 subunit of formate hydrogenlyase-like membrane complex, related to large subunit of hydrogenase; NADH-ubiquinone oxidoreductase chain 49kDa 1790283..1791830 Acidithiobacillus ferrooxidans ATCC 53993 6877795 YP_002220240.1 CDS Lferr_1812 NC_011206.1 1791867 1792364 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: reh:H16_A2201 formate hydrogenlyase subunit 7; NADH ubiquinone oxidoreductase 20 kDa subunit 1791867..1792364 Acidithiobacillus ferrooxidans ATCC 53993 6877796 YP_002220241.1 CDS Lferr_1813 NC_011206.1 1792418 1792657 D hypothetical protein 1792418..1792657 Acidithiobacillus ferrooxidans ATCC 53993 6877797 YP_002220242.1 CDS Lferr_1814 NC_011206.1 1792621 1794000 D catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase 1792621..1794000 Acidithiobacillus ferrooxidans ATCC 53993 6877798 YP_002220243.1 CDS Lferr_1815 NC_011206.1 1794150 1794968 D PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ; CbbQ/NirQ/NorQ domain-containing protein 1794150..1794968 Acidithiobacillus ferrooxidans ATCC 53993 6877799 YP_002220244.1 CDS Lferr_1816 NC_011206.1 1794987 1797266 D PFAM: von Willebrand factor type A; KEGG: tbd:Tbd_2636 rubisco activation protein CbbO; hypothetical protein 1794987..1797266 Acidithiobacillus ferrooxidans ATCC 53993 6877800 YP_002220245.1 CDS Lferr_1817 NC_011206.1 1797273 1798184 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hha:Hhal_1047 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1797273..1798184) Acidithiobacillus ferrooxidans ATCC 53993 6877801 YP_002220246.1 CDS Lferr_1818 NC_011206.1 1798181 1798522 R TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: bcz:pE33L466_0444 alkylphosphonate uptake protein; alkylphosphonate utilization operon protein PhnA complement(1798181..1798522) Acidithiobacillus ferrooxidans ATCC 53993 6877802 YP_002220247.1 CDS Lferr_1819 NC_011206.1 1798536 1799243 R KEGG: eba:ebA4197 putative transferase; transferase complement(1798536..1799243) Acidithiobacillus ferrooxidans ATCC 53993 6877803 YP_002220248.1 CDS Lferr_1820 NC_011206.1 1799476 1801341 D KEGG: xfa:XF1451 hypothetical protein; hypothetical protein 1799476..1801341 Acidithiobacillus ferrooxidans ATCC 53993 6877804 YP_002220249.1 CDS Lferr_1821 NC_011206.1 1801338 1801451 D hypothetical protein 1801338..1801451 Acidithiobacillus ferrooxidans ATCC 53993 6877805 YP_002220250.1 CDS Lferr_1822 NC_011206.1 1801602 1801904 D hypothetical protein 1801602..1801904 Acidithiobacillus ferrooxidans ATCC 53993 6877806 YP_002220251.1 CDS Lferr_1823 NC_011206.1 1802028 1802615 D hypothetical protein 1802028..1802615 Acidithiobacillus ferrooxidans ATCC 53993 6877807 YP_002220252.1 CDS Lferr_1824 NC_011206.1 1803379 1803912 D hypothetical protein 1803379..1803912 Acidithiobacillus ferrooxidans ATCC 53993 6877808 YP_002220253.1 CDS Lferr_1825 NC_011206.1 1804056 1805429 D PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_C1144 ABC antibiotic efflux pump, membrane fusion protein, HlyD subfamily; secretion protein HlyD family protein 1804056..1805429 Acidithiobacillus ferrooxidans ATCC 53993 6877809 YP_002220254.1 CDS Lferr_1826 NC_011206.1 1805426 1807597 D PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: bxe:Bxe_C1143 ABC antibiotic efflux pump, fused ATPase and inner membrane subunits and peptidase; ABC transporter-like protein 1805426..1807597 Acidithiobacillus ferrooxidans ATCC 53993 6877810 YP_002220255.1 CDS Lferr_1827 NC_011206.1 1807632 1809122 D PFAM: outer membrane efflux protein; KEGG: bte:BTH_I2950 type I secretion outer membrane protein, TolC family; outer membrane efflux protein 1807632..1809122 Acidithiobacillus ferrooxidans ATCC 53993 6877811 YP_002220256.1 CDS Lferr_1828 NC_011206.1 1809212 1810048 D PFAM: polysaccharide deacetylase; KEGG: gsu:GSU2543 polysaccharide deacetylase domain protein; polysaccharide deacetylase 1809212..1810048 Acidithiobacillus ferrooxidans ATCC 53993 6877812 YP_002220257.1 CDS Lferr_1829 NC_011206.1 1810060 1811427 D KEGG: bvi:Bcep1808_6307 hypothetical protein; hypothetical protein 1810060..1811427 Acidithiobacillus ferrooxidans ATCC 53993 6877813 YP_002220258.1 CDS Lferr_1830 NC_011206.1 1811382 1812740 D PFAM: beta-lactamase; KEGG: sus:Acid_3631 uncharacterised conserved protein UCP016719; beta-lactamase 1811382..1812740 Acidithiobacillus ferrooxidans ATCC 53993 6877814 YP_002220259.1 CDS Lferr_1831 NC_011206.1 1812765 1813289 R PFAM: NUDIX hydrolase; KEGG: aeh:Mlg_0427 NUDIX hydrolase; NUDIX hydrolase complement(1812765..1813289) Acidithiobacillus ferrooxidans ATCC 53993 6877815 YP_002220260.1 CDS Lferr_1832 NC_011206.1 1813377 1813820 R PFAM: NUDIX hydrolase; KEGG: net:Neut_0259 NUDIX hydrolase; NUDIX hydrolase complement(1813377..1813820) Acidithiobacillus ferrooxidans ATCC 53993 6877816 YP_002220261.1 CDS Lferr_1833 NC_011206.1 1813817 1814530 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ccr:CC_1838 ribosomal small subunit pseudouridine synthase A; pseudouridine synthase complement(1813817..1814530) Acidithiobacillus ferrooxidans ATCC 53993 6877817 YP_002220262.1 CDS Lferr_1834 NC_011206.1 1814615 1815646 D PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: noc:Noc_2447 porphyromonas-type peptidyl-arginine deiminase; Agmatine deiminase 1814615..1815646 Acidithiobacillus ferrooxidans ATCC 53993 6877818 YP_002220263.1 CDS Lferr_1835 NC_011206.1 1815838 1818588 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cte:CT0496 polysulfide reductase, subunit A, putative; molybdopterin oxidoreductase 1815838..1818588 Acidithiobacillus ferrooxidans ATCC 53993 6877819 YP_002220264.1 CDS Lferr_1836 NC_011206.1 1818599 1819222 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pvi:Cvib_1686 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1818599..1819222 Acidithiobacillus ferrooxidans ATCC 53993 6877820 YP_002220265.1 CDS Lferr_1837 NC_011206.1 1819219 1820253 D PFAM: Polysulphide reductase NrfD; KEGG: pvi:Cvib_1687 polysulphide reductase, NrfD; polysulfide reductase NrfD 1819219..1820253 Acidithiobacillus ferrooxidans ATCC 53993 6877821 YP_002220266.1 CDS Lferr_1838 NC_011206.1 1820261 1820761 D KEGG: hma:rrnAC1211 hypothetical protein; hypothetical protein 1820261..1820761 Acidithiobacillus ferrooxidans ATCC 53993 6877822 YP_002220267.1 CDS Lferr_1839 NC_011206.1 1820758 1821291 D hypothetical protein 1820758..1821291 Acidithiobacillus ferrooxidans ATCC 53993 6877823 YP_002220268.1 CDS Lferr_1840 NC_011206.1 1821540 1821815 R hypothetical protein complement(1821540..1821815) Acidithiobacillus ferrooxidans ATCC 53993 6877824 YP_002220269.1 CDS Lferr_1841 NC_011206.1 1821873 1822304 R PFAM: UspA domain protein; KEGG: maq:Maqu_0620 UspA domain protein; UspA domain-containing protein complement(1821873..1822304) Acidithiobacillus ferrooxidans ATCC 53993 6877825 YP_002220270.1 CDS Lferr_1842 NC_011206.1 1822357 1823907 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_1624 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter complement(1822357..1823907) Acidithiobacillus ferrooxidans ATCC 53993 6877826 YP_002220271.1 CDS Lferr_1843 NC_011206.1 1823904 1824347 R PFAM: regulatory protein MarR; KEGG: kpn:KPN_01489 putative bacterial regulatory protein, MarR; marR family transcriptional regulator complement(1823904..1824347) Acidithiobacillus ferrooxidans ATCC 53993 6877827 YP_002220272.1 CDS Lferr_1844 NC_011206.1 1824532 1825350 D PFAM: prolipoprotein diacylglyceryl transferase; KEGG: pap:PSPA7_0434 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1824532..1825350 Acidithiobacillus ferrooxidans ATCC 53993 6877828 YP_002220273.1 CDS Lferr_1845 NC_011206.1 1825372 1827360 D PFAM: UvrD/REP helicase; KEGG: pmy:Pmen_0253 ATP-dependent DNA helicase Rep; UvrD/REP helicase 1825372..1827360 Acidithiobacillus ferrooxidans ATCC 53993 6877829 YP_002220274.1 CDS rpsT NC_011206.1 1827461 1827736 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1827461..1827736) Acidithiobacillus ferrooxidans ATCC 53993 6877830 YP_002220275.1 CDS Lferr_1847 NC_011206.1 1827872 1828885 R PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: bvi:Bcep1808_7296 ABC transporter related; ABC transporter-like protein complement(1827872..1828885) Acidithiobacillus ferrooxidans ATCC 53993 6877831 YP_002220276.1 CDS Lferr_1848 NC_011206.1 1828905 1829708 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bvi:Bcep1808_7295 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1828905..1829708) Acidithiobacillus ferrooxidans ATCC 53993 6877832 YP_002220277.1 CDS Lferr_1849 NC_011206.1 1830085 1830363 D hypothetical protein 1830085..1830363 Acidithiobacillus ferrooxidans ATCC 53993 6877833 YP_002220278.1 CDS apaH NC_011206.1 1830367 1831206 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 1830367..1831206 Acidithiobacillus ferrooxidans ATCC 53993 6877834 YP_002220279.1 CDS Lferr_1851 NC_011206.1 1831262 1833073 D KEGG: aeh:Mlg_0870 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 1831262..1833073 Acidithiobacillus ferrooxidans ATCC 53993 6877835 YP_002220280.1 CDS Lferr_1852 NC_011206.1 1833161 1833475 D TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: aha:AHA_0472 protein CyaY; iron donor protein CyaY 1833161..1833475 Acidithiobacillus ferrooxidans ATCC 53993 6877836 YP_002220281.1 CDS Lferr_1853 NC_011206.1 1833480 1833932 D PFAM: protein of unknown function DUF55; KEGG: dra:DR_0566 hypothetical protein; hypothetical protein 1833480..1833932 Acidithiobacillus ferrooxidans ATCC 53993 6877837 YP_002220282.1 CDS Lferr_1854 NC_011206.1 1834049 1834393 D hypothetical protein 1834049..1834393 Acidithiobacillus ferrooxidans ATCC 53993 6877838 YP_002220283.1 CDS Lferr_1855 NC_011206.1 1834386 1835459 R PFAM: permease YjgP/YjgQ family protein; KEGG: azo:azo2902 probable integral membrane protein; YjgP/YjgQ family permease complement(1834386..1835459) Acidithiobacillus ferrooxidans ATCC 53993 6877839 YP_002220284.1 CDS Lferr_1856 NC_011206.1 1835456 1836562 R PFAM: permease YjgP/YjgQ family protein; KEGG: eba:ebA7173 hypothetical protein; YjgP/YjgQ family permease complement(1835456..1836562) Acidithiobacillus ferrooxidans ATCC 53993 6877840 YP_002220285.1 CDS Lferr_1857 NC_011206.1 1836694 1838196 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: hha:Hhal_0681 leucyl aminopeptidase; leucyl aminopeptidase 1836694..1838196 Acidithiobacillus ferrooxidans ATCC 53993 6877841 YP_002220286.1 CDS Lferr_1858 NC_011206.1 1838209 1838634 D PFAM: DNA polymerase III chi subunit HolC; KEGG: sdn:Sden_2866 DNA polymerase III chi subunit, HolC; DNA polymerase III subunit chi HolC 1838209..1838634 Acidithiobacillus ferrooxidans ATCC 53993 6877842 YP_002220287.1 CDS Lferr_1859 NC_011206.1 1838648 1839343 D KEGG: dge:Dgeo_2350 magnesium chelatase, ChlI subunit; hypothetical protein 1838648..1839343 Acidithiobacillus ferrooxidans ATCC 53993 6877843 YP_002220288.1 CDS Lferr_1860 NC_011206.1 1839340 1842156 D TIGRFAM: valyl-tRNA synthetase; KEGG: noc:Noc_1091 valyl-tRNA synthetase, class Ia; valyl-tRNA synthetase 1839340..1842156 Acidithiobacillus ferrooxidans ATCC 53993 6877844 YP_002220289.1 CDS Lferr_1861 NC_011206.1 1842187 1843542 D PFAM: Na+/H+ antiporter NhaA; KEGG: sfu:Sfum_2570 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 1842187..1843542 Acidithiobacillus ferrooxidans ATCC 53993 6877845 YP_002220290.1 CDS Lferr_1862 NC_011206.1 1843539 1844366 D KEGG: azo:azo2079 nicotinate-nucleotide diphosphorylase (carboxylating); TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 1843539..1844366 Acidithiobacillus ferrooxidans ATCC 53993 6877846 YP_002220291.1 CDS Lferr_1863 NC_011206.1 1844379 1845617 R KEGG: mfa:Mfla_0394 hypothetical protein; hypothetical protein complement(1844379..1845617) Acidithiobacillus ferrooxidans ATCC 53993 6877847 YP_002220292.1 CDS Lferr_1864 NC_011206.1 1845780 1846394 D PFAM: regulatory protein TetR; KEGG: tbd:Tbd_0482 possible transcriptional regulator, TetR family; TetR family transcriptional regulator 1845780..1846394 Acidithiobacillus ferrooxidans ATCC 53993 6877848 YP_002220293.1 CDS Lferr_1865 NC_011206.1 1846375 1847103 D PFAM: dienelactone hydrolase; BAAT/Acyl-CoA thioester hydrolase; KEGG: tel:tlr1423 putative carboxymethylenebutenolidase; carboxymethylenebutenolidase 1846375..1847103 Acidithiobacillus ferrooxidans ATCC 53993 6877849 YP_002220294.1 CDS Lferr_1866 NC_011206.1 1847100 1848176 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gme:Gmet_2577 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1847100..1848176 Acidithiobacillus ferrooxidans ATCC 53993 6877850 YP_002220295.1 CDS Lferr_1867 NC_011206.1 1848259 1848885 R KEGG: hha:Hhal_2252 hypothetical protein; hypothetical protein complement(1848259..1848885) Acidithiobacillus ferrooxidans ATCC 53993 6877851 YP_002220296.1 CDS Lferr_1868 NC_011206.1 1849093 1849659 D PFAM: protein of unknown function DUF805; KEGG: rde:RD1_1610 hypothetical protein; hypothetical protein 1849093..1849659 Acidithiobacillus ferrooxidans ATCC 53993 6877853 YP_002220297.1 CDS Lferr_1869 NC_011206.1 1849692 1850486 D TIGRFAM: methyltransferase FkbM family; KEGG: pnu:Pnuc_1098 methyltransferase FkbM family; FkbM family methyltransferase 1849692..1850486 Acidithiobacillus ferrooxidans ATCC 53993 6877854 YP_002220298.1 CDS Lferr_1870 NC_011206.1 1850603 1851496 D PFAM: alpha/beta hydrolase fold; KEGG: hma:rrnAC2850 hydrolase alpha/beta hydrolase fold family; alpha/beta fold family hydrolase 1850603..1851496 Acidithiobacillus ferrooxidans ATCC 53993 6877855 YP_002220299.1 CDS Lferr_1871 NC_011206.1 1851489 1852058 R PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: xcb:XC_0112 hypothetical protein; isoprenylcysteine carboxyl methyltransferase complement(1851489..1852058) Acidithiobacillus ferrooxidans ATCC 53993 6877856 YP_002220300.1 CDS Lferr_1872 NC_011206.1 1852164 1852847 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ilo:IL1347 predicted phosphatase related to gph; HAD-superfamily hydrolase complement(1852164..1852847) Acidithiobacillus ferrooxidans ATCC 53993 6877857 YP_002220301.1 CDS Lferr_1873 NC_011206.1 1852844 1853797 R KEGG: spe:Spro_1899 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(1852844..1853797) Acidithiobacillus ferrooxidans ATCC 53993 6877858 YP_002220302.1 CDS Lferr_1874 NC_011206.1 1853994 1856342 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: maq:Maqu_1876 ribonuclease, Rne/Rng family; Rne/Rng family ribonuclease 1853994..1856342 Acidithiobacillus ferrooxidans ATCC 53993 6877859 YP_002220303.1 CDS Lferr_1875 NC_011206.1 1856385 1857773 R KEGG: aeh:Mlg_1810 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; cysteinyl-tRNA synthetase complement(1856385..1857773) Acidithiobacillus ferrooxidans ATCC 53993 6877860 YP_002220304.1 CDS Lferr_1876 NC_011206.1 1857770 1859218 R TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: aeh:Mlg_1811 glutamate--tRNA(Gln) ligase / glutamyl-tRNA synthetase; glutamyl-tRNA synthetase complement(1857770..1859218) Acidithiobacillus ferrooxidans ATCC 53993 6877861 YP_002220305.1 CDS Lferr_1877 NC_011206.1 1859316 1861805 D PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: mca:MCA0324 penicillin-binding protein 1A; peptidoglycan glycosyltransferase 1859316..1861805 Acidithiobacillus ferrooxidans ATCC 53993 6877862 YP_002220306.1 CDS Lferr_1878 NC_011206.1 1861806 1864166 D PFAM: glycoside hydrolase 15-related; Glucodextranase N; KEGG: bbt:BBta_p0098 putative glucoamylase precursor; glucan 1,4-alpha-glucosidase 1861806..1864166 Acidithiobacillus ferrooxidans ATCC 53993 6877863 YP_002220307.1 CDS Lferr_1879 NC_011206.1 1864163 1864948 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tac:Ta0191 probable glucose 1-dehydrogenase; short-chain dehydrogenase/reductase SDR 1864163..1864948 Acidithiobacillus ferrooxidans ATCC 53993 6877864 YP_002220308.1 CDS Lferr_1880 NC_011206.1 1865258 1865794 D hypothetical protein 1865258..1865794 Acidithiobacillus ferrooxidans ATCC 53993 6877865 YP_002220309.1 CDS Lferr_1881 NC_011206.1 1865791 1866789 D PFAM: aminoglycoside phosphotransferase; KEGG: sat:SYN_02490 hypothetical cytosolic protein; aminoglycoside phosphotransferase 1865791..1866789 Acidithiobacillus ferrooxidans ATCC 53993 6877866 YP_002220310.1 CDS Lferr_1882 NC_011206.1 1866794 1867540 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nmu:Nmul_A1707 haloacid dehalogenase-like hydrolase; haloacid dehalogenase domain-containing protein hydrolase 1866794..1867540 Acidithiobacillus ferrooxidans ATCC 53993 6877867 YP_002220311.1 CDS Lferr_1883 NC_011206.1 1867593 1868336 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_0359 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(1867593..1868336) Acidithiobacillus ferrooxidans ATCC 53993 6877868 YP_002220312.1 CDS Lferr_1884 NC_011206.1 1868340 1871081 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: hau:Haur_2273 osmosensitive K+ channel signal transduction histidine kinase; osmosensitive K+ channel signal transduction histidine kinase complement(1868340..1871081) Acidithiobacillus ferrooxidans ATCC 53993 6877869 YP_002220313.1 CDS Lferr_1885 NC_011206.1 1871533 1873284 D KEGG: cvi:CV_1599 potassium-transporting ATPase subunit A; TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A 1871533..1873284 Acidithiobacillus ferrooxidans ATCC 53993 6877870 YP_002220314.1 CDS Lferr_1886 NC_011206.1 1873297 1875366 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: eca:ECA1341 potassium-transporting ATPase subunit B; K+-transporting ATPase subunit B 1873297..1875366 Acidithiobacillus ferrooxidans ATCC 53993 6877871 YP_002220315.1 CDS Lferr_1887 NC_011206.1 1875379 1875999 D KEGG: bbr:BB3919 potassium-transporting ATPase subunit C; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C 1875379..1875999 Acidithiobacillus ferrooxidans ATCC 53993 6877872 YP_002220316.1 CDS Lferr_1888 NC_011206.1 1876047 1876313 D KEGG: rpc:RPC_2258 hypothetical protein; hypothetical protein 1876047..1876313 Acidithiobacillus ferrooxidans ATCC 53993 6877873 YP_002220317.1 CDS Lferr_1889 NC_011206.1 1876511 1877041 D PFAM: aspartate/glutamate/uridylate kinase; KEGG: tcx:Tcr_0344 gamma-glutamyl kinase; aspartate/glutamate/uridylate kinase 1876511..1877041 Acidithiobacillus ferrooxidans ATCC 53993 6877874 YP_002220318.1 CDS Lferr_1890 NC_011206.1 1877113 1878327 D KEGG: mrd:Mrad2831_2268 hypothetical protein; hypothetical protein 1877113..1878327 Acidithiobacillus ferrooxidans ATCC 53993 6877875 YP_002220319.1 CDS Lferr_1891 NC_011206.1 1878383 1878781 D PFAM: nitrogen regulatory protein P-II; KEGG: azo:azo3739 PII-like signal transmitter protein GlnK; nitrogen regulatory protein P-II 1878383..1878781 Acidithiobacillus ferrooxidans ATCC 53993 6877876 YP_002220320.1 CDS Lferr_1892 NC_011206.1 1879136 1879495 D hypothetical protein 1879136..1879495 Acidithiobacillus ferrooxidans ATCC 53993 6877877 YP_002220321.1 CDS Lferr_1893 NC_011206.1 1879776 1880048 D hypothetical protein 1879776..1880048 Acidithiobacillus ferrooxidans ATCC 53993 6877878 YP_002220322.1 CDS Lferr_1894 NC_011206.1 1880118 1880237 D hypothetical protein 1880118..1880237 Acidithiobacillus ferrooxidans ATCC 53993 6877879 YP_002220323.1 CDS Lferr_1895 NC_011206.1 1880250 1881443 D PFAM: sodium/hydrogen exchanger; KEGG: mxa:MXAN_5112 Na+/H+ antiporter; sodium/hydrogen exchanger 1880250..1881443 Acidithiobacillus ferrooxidans ATCC 53993 6877880 YP_002220324.1 CDS Lferr_1896 NC_011206.1 1881700 1882305 R KEGG: mms:mma_3066 thiol:disulfide interchange protein DsbG; hypothetical protein complement(1881700..1882305) Acidithiobacillus ferrooxidans ATCC 53993 6877881 YP_002220325.1 CDS Lferr_1897 NC_011206.1 1882420 1882860 R hypothetical protein complement(1882420..1882860) Acidithiobacillus ferrooxidans ATCC 53993 6877882 YP_002220326.1 CDS Lferr_1898 NC_011206.1 1883488 1884609 R PFAM: Carbohydrate-selective porin OprB; KEGG: bpd:BURPS668_0296 carbohydrate porin, OprB family; carbohydrate-selective porin OprB complement(1883488..1884609) Acidithiobacillus ferrooxidans ATCC 53993 6877883 YP_002220327.1 CDS Lferr_1899 NC_011206.1 1884622 1885809 R PFAM: Pyrrolo-quinoline quinone; KEGG: nph:NP5062A predicted cell surface protein/lipoprotein; pyrrolo-quinoline quinone complement(1884622..1885809) Acidithiobacillus ferrooxidans ATCC 53993 6877884 YP_002220328.1 CDS Lferr_1900 NC_011206.1 1886164 1891650 D PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: mlo:mlr1663 hypothetical protein; alpha-2-macroglobulin domain-containing protein 1886164..1891650 Acidithiobacillus ferrooxidans ATCC 53993 6877885 YP_002220329.1 CDS Lferr_1901 NC_011206.1 1891658 1893724 D PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rru:Rru_A0105 penicillin-binding protein 1C; glycosyl transferase 1891658..1893724 Acidithiobacillus ferrooxidans ATCC 53993 6877886 YP_002220330.1 CDS Lferr_1902 NC_011206.1 1894020 1894373 R hypothetical protein complement(1894020..1894373) Acidithiobacillus ferrooxidans ATCC 53993 6877887 YP_002220331.1 CDS Lferr_1903 NC_011206.1 1894386 1895177 R PFAM: beta-lactamase domain protein; KEGG: rme:Rmet_0019 beta-lactamase-like protein; beta-lactamase domain-containing protein complement(1894386..1895177) Acidithiobacillus ferrooxidans ATCC 53993 6877888 YP_002220332.1 CDS Lferr_1904 NC_011206.1 1895321 1896076 R KEGG: xau:Xaut_2486 hypothetical protein; hypothetical protein complement(1895321..1896076) Acidithiobacillus ferrooxidans ATCC 53993 6877889 YP_002220333.1 CDS Lferr_1905 NC_011206.1 1896077 1896994 R PFAM: protein of unknown function DUF81; KEGG: mag:amb4406 predicted permease; hypothetical protein complement(1896077..1896994) Acidithiobacillus ferrooxidans ATCC 53993 6877890 YP_002220334.1 CDS Lferr_1906 NC_011206.1 1896996 1897529 R PFAM: UspA domain protein; KEGG: nfa:nfa29970 hypothetical protein; UspA domain-containing protein complement(1896996..1897529) Acidithiobacillus ferrooxidans ATCC 53993 6877891 YP_002220335.1 CDS Lferr_1907 NC_011206.1 1897779 1899344 D KEGG: gme:Gmet_2905 AICARFT/IMPCHase bienzyme:MGS-like; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1897779..1899344 Acidithiobacillus ferrooxidans ATCC 53993 6877892 YP_002220336.1 CDS Lferr_1908 NC_011206.1 1899358 1900620 D KEGG: abo:ABO_2016 phosphoribosylamine-glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; phosphoribosylamine--glycine ligase 1899358..1900620 Acidithiobacillus ferrooxidans ATCC 53993 6877893 YP_002220337.1 CDS Lferr_1909 NC_011206.1 1900636 1901196 D PFAM: SUA5/yciO/yrdC domain; KEGG: hha:Hhal_2328 SUA5/YciO/YrdC/YwlC family protein; SUA5/yciO/yrdC domain 1900636..1901196 Acidithiobacillus ferrooxidans ATCC 53993 6877894 YP_002220338.1 CDS Lferr_1910 NC_011206.1 1901201 1902091 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1901201..1902091 Acidithiobacillus ferrooxidans ATCC 53993 6877895 YP_002220339.1 CDS Lferr_1911 NC_011206.1 1902088 1903179 D PFAM: dihydroorotate dehydrogenase; KEGG: rrs:RoseRS_2860 dihydroorotate oxidase; dihydroorotate oxidase 1902088..1903179 Acidithiobacillus ferrooxidans ATCC 53993 6877896 YP_002220340.1 CDS Lferr_1912 NC_011206.1 1903339 1903488 D hypothetical protein 1903339..1903488 Acidithiobacillus ferrooxidans ATCC 53993 6877897 YP_002220341.1 CDS Lferr_1913 NC_011206.1 1903805 1904353 D PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO1091 acetyltransferase; N-acetyltransferase GCN5 1903805..1904353 Acidithiobacillus ferrooxidans ATCC 53993 6877898 YP_002220342.1 CDS Lferr_1914 NC_011206.1 1904357 1905973 R PFAM: phosphoesterase; KEGG: mca:MCA2512 acid phosphatase; phospholipase C complement(1904357..1905973) Acidithiobacillus ferrooxidans ATCC 53993 6877899 YP_002220343.1 CDS Lferr_1915 NC_011206.1 1905988 1906701 R TIGRFAM: TonB family protein; KEGG: acr:Acry_0296 TonB family protein; TonB family protein complement(1905988..1906701) Acidithiobacillus ferrooxidans ATCC 53993 6877900 YP_002220344.1 CDS Lferr_1916 NC_011206.1 1906723 1907124 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: acr:Acry_1461 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(1906723..1907124) Acidithiobacillus ferrooxidans ATCC 53993 6877901 YP_002220345.1 CDS Lferr_1917 NC_011206.1 1907124 1907807 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: acr:Acry_3610 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(1907124..1907807) Acidithiobacillus ferrooxidans ATCC 53993 6877902 YP_002220346.1 CDS Lferr_1918 NC_011206.1 1907872 1908630 R PFAM: transcriptional regulator domain protein; KEGG: noc:Noc_2401 phosphate regulon transcriptional regulatory protein PhoB; winged helix family two component transcriptional regulator complement(1907872..1908630) Acidithiobacillus ferrooxidans ATCC 53993 6877903 YP_002220347.1 CDS Lferr_1919 NC_011206.1 1908809 1909321 R KEGG: mpt:Mpe_A0534 hypothetical protein; hypothetical protein complement(1908809..1909321) Acidithiobacillus ferrooxidans ATCC 53993 6877904 YP_002220348.1 CDS Lferr_1920 NC_011206.1 1909798 1910490 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: acr:Acry_1460 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1909798..1910490 Acidithiobacillus ferrooxidans ATCC 53993 6877905 YP_002220349.1 CDS Lferr_1921 NC_011206.1 1910524 1913412 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: sus:Acid_4558 40-residue YVTN family beta-propeller repeat protein; SMP-30/gluconolaconase/LRE domain-containing protein 1910524..1913412 Acidithiobacillus ferrooxidans ATCC 53993 6877906 YP_002220350.1 CDS Lferr_1922 NC_011206.1 1913589 1914215 D TIGRFAM: TonB family protein; KEGG: acr:Acry_0296 TonB family protein; TonB family protein 1913589..1914215 Acidithiobacillus ferrooxidans ATCC 53993 6877907 YP_002220351.1 CDS Lferr_1923 NC_011206.1 1914254 1914853 D KEGG: bte:BTH_II2048 hypothetical protein; hypothetical protein 1914254..1914853 Acidithiobacillus ferrooxidans ATCC 53993 6877908 YP_002220352.1 CDS Lferr_1924 NC_011206.1 1914892 1916289 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mhu:Mhun_1633 general substrate transporter; major facilitator superfamily protein 1914892..1916289 Acidithiobacillus ferrooxidans ATCC 53993 6877909 YP_002220353.1 CDS Lferr_1925 NC_011206.1 1916389 1916865 D TIGRFAM: phosphonate C-P lyase system protein PhnG; KEGG: kpn:KPN_04499 phosphonate metabolism; phosphonate C-P lyase system protein PhnG 1916389..1916865 Acidithiobacillus ferrooxidans ATCC 53993 6877910 YP_002220354.1 CDS Lferr_1926 NC_011206.1 1916862 1917404 D TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: yen:YE0476 carbon-phosphorus lyase complex subunit; phosphonate C-P lyase system protein PhnH 1916862..1917404 Acidithiobacillus ferrooxidans ATCC 53993 6877911 YP_002220355.1 CDS Lferr_1927 NC_011206.1 1917408 1918505 D PFAM: phosphonate metabolism; KEGG: acr:Acry_2913 phosphonate metabolism; phosphonate metabolism protein 1917408..1918505 Acidithiobacillus ferrooxidans ATCC 53993 6877912 YP_002220356.1 CDS Lferr_1928 NC_011206.1 1918502 1919326 D PFAM: phosphonate metabolism PhnJ; KEGG: acr:Acry_2914 phosphonate metabolism PhnJ; phosphonate metabolism PhnJ 1918502..1919326 Acidithiobacillus ferrooxidans ATCC 53993 6877913 YP_002220357.1 CDS phnK NC_011206.1 1919323 1920105 D KEGG: pau:PA14_20400 phosphonates transport ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnK 1919323..1920105 Acidithiobacillus ferrooxidans ATCC 53993 6877914 YP_002220358.1 CDS Lferr_1930 NC_011206.1 1920102 1920800 D KEGG: oan:Oant_2191 phosphonate C-P lyase system protein PhnL; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnL 1920102..1920800 Acidithiobacillus ferrooxidans ATCC 53993 6877915 YP_002220359.1 CDS Lferr_1931 NC_011206.1 1920797 1921933 D TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: acr:Acry_2917 phosphonate metabolism protein PhnM; phosphonate metabolism protein PhnM 1920797..1921933 Acidithiobacillus ferrooxidans ATCC 53993 6877916 YP_002220360.1 CDS Lferr_1932 NC_011206.1 1921941 1922618 D TIGRFAM: phosphonate metabolism protein; PFAM: protein of unknown function DUF1045; KEGG: acr:Acry_2918 protein of unknown function DUF1045; phosphonate metabolism protein 1921941..1922618 Acidithiobacillus ferrooxidans ATCC 53993 6877917 YP_002220361.1 CDS Lferr_1933 NC_011206.1 1922611 1923156 D KEGG: mlo:mll4973 hypothetical protein; hypothetical protein 1922611..1923156 Acidithiobacillus ferrooxidans ATCC 53993 6877918 YP_002220362.1 CDS Lferr_1934 NC_011206.1 1923153 1923905 D TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: acr:Acry_2920 transcriptional regulator, GntR family; GntR family transcriptional regulator 1923153..1923905 Acidithiobacillus ferrooxidans ATCC 53993 6877919 YP_002220363.1 CDS Lferr_1935 NC_011206.1 1924015 1926354 R PFAM: TonB-dependent receptor; KEGG: acr:Acry_3609 TonB-dependent receptor; TonB-dependent receptor complement(1924015..1926354) Acidithiobacillus ferrooxidans ATCC 53993 6877920 YP_002220364.1 CDS Lferr_1936 NC_011206.1 1926964 1927170 R hypothetical protein complement(1926964..1927170) Acidithiobacillus ferrooxidans ATCC 53993 6877921 YP_002220365.1 CDS Lferr_1937 NC_011206.1 1927196 1929517 R PFAM: TonB-dependent receptor; KEGG: acr:Acry_3609 TonB-dependent receptor; TonB-dependent receptor complement(1927196..1929517) Acidithiobacillus ferrooxidans ATCC 53993 6877922 YP_002220366.1 CDS Lferr_1940 NC_011206.1 1931673 1932374 D PFAM: phosphoesterase; KEGG: bxe:Bxe_A1301 putative acid phosphatase; phosphoesterase 1931673..1932374 Acidithiobacillus ferrooxidans ATCC 53993 6877925 YP_002220367.1 CDS Lferr_1941 NC_011206.1 1932469 1934676 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX1075 TonB-dependent outer membrane receptor; TonB-dependent receptor 1932469..1934676 Acidithiobacillus ferrooxidans ATCC 53993 6877926 YP_002220368.1 CDS Lferr_1942 NC_011206.1 1934732 1935409 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: acr:Acry_3610 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1934732..1935409 Acidithiobacillus ferrooxidans ATCC 53993 6877927 YP_002220369.1 CDS Lferr_1943 NC_011206.1 1935412 1935801 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: acr:Acry_1461 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1935412..1935801 Acidithiobacillus ferrooxidans ATCC 53993 6877928 YP_002220370.1 CDS Lferr_1944 NC_011206.1 1935807 1936535 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: bpd:BURPS668_A0619 TonB domain protein; TonB family protein 1935807..1936535 Acidithiobacillus ferrooxidans ATCC 53993 6877929 YP_002220371.1 CDS Lferr_1945 NC_011206.1 1936556 1938772 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_4325 TonB-dependent receptor; TonB-dependent receptor 1936556..1938772 Acidithiobacillus ferrooxidans ATCC 53993 6877930 YP_002220372.1 CDS Lferr_1946 NC_011206.1 1938873 1941710 D KEGG: bpd:BURPS668_A2873 lipoprotein, putative; lipoprotein 1938873..1941710 Acidithiobacillus ferrooxidans ATCC 53993 6877931 YP_002220373.1 CDS Lferr_1947 NC_011206.1 1941843 1942499 D TIGRFAM: TonB family protein; KEGG: ppw:PputW619_0295 TonB family protein; TonB family protein 1941843..1942499 Acidithiobacillus ferrooxidans ATCC 53993 6877932 YP_002220374.1 CDS Lferr_1948 NC_011206.1 1942569 1942931 D KEGG: eba:ebA362 phosphodiesterase/alkaline phosphatase D; hypothetical protein 1942569..1942931 Acidithiobacillus ferrooxidans ATCC 53993 6877933 YP_002220375.1 CDS Lferr_1949 NC_011206.1 1942942 1943796 R PFAM: transcriptional regulator domain protein; KEGG: plu:plu3911 phosphate regulon transcriptional regulatory protein; winged helix family two component transcriptional regulator complement(1942942..1943796) Acidithiobacillus ferrooxidans ATCC 53993 6877934 YP_002220376.1 CDS Lferr_1951 NC_011206.1 1944485 1945759 R KEGG: acr:Acry_0114 hypothetical protein; hypothetical protein complement(1944485..1945759) Acidithiobacillus ferrooxidans ATCC 53993 6877936 YP_002220377.1 CDS Lferr_1952 NC_011206.1 1946031 1946267 R KEGG: gme:Gmet_3283 transposase, IS4; transposase, IS4 complement(1946031..1946267) Acidithiobacillus ferrooxidans ATCC 53993 6877937 YP_002220378.1 CDS Lferr_1953 NC_011206.1 1946501 1947859 R KEGG: acr:Acry_0468 sugar transporter; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter complement(1946501..1947859) Acidithiobacillus ferrooxidans ATCC 53993 6877938 YP_002220379.1 CDS Lferr_1955 NC_011206.1 1948532 1949014 R TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: dsy:DSY1024 hypothetical protein; phosphohistidine phosphatase SixA complement(1948532..1949014) Acidithiobacillus ferrooxidans ATCC 53993 6877940 YP_002220380.1 CDS Lferr_1956 NC_011206.1 1949298 1949834 R PFAM: outer membrane lipoprotein Slp; KEGG: xcv:XCV1131 Slp family outer membrane protein; outer membrane lipoprotein Slp complement(1949298..1949834) Acidithiobacillus ferrooxidans ATCC 53993 6877942 YP_002220381.1 CDS Lferr_1957 NC_011206.1 1949951 1951246 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tbd:Tbd_2353 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1949951..1951246) Acidithiobacillus ferrooxidans ATCC 53993 6877943 YP_002220382.1 CDS Lferr_1958 NC_011206.1 1951243 1951923 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_2354 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(1951243..1951923) Acidithiobacillus ferrooxidans ATCC 53993 6877944 YP_002220383.1 CDS Lferr_1959 NC_011206.1 1952496 1953080 D PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: aeh:Mlg_1502 oligoribonuclease; Exonuclease RNase T and DNA polymerase III 1952496..1953080 Acidithiobacillus ferrooxidans ATCC 53993 6877945 YP_002220384.1 CDS Lferr_1960 NC_011206.1 1953227 1954315 D PFAM: Luciferase-like monooxygenase; KEGG: bja:bll7033 LuxA-like protein; luciferase-like monooxygenase 1953227..1954315 Acidithiobacillus ferrooxidans ATCC 53993 6877946 YP_002220385.1 CDS Lferr_1961 NC_011206.1 1954315 1955277 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sen:SACE_4154 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1954315..1955277 Acidithiobacillus ferrooxidans ATCC 53993 6877947 YP_002220386.1 CDS Lferr_1962 NC_011206.1 1955299 1956189 D KEGG: mav:MAV_1064 hypothetical protein; hypothetical protein 1955299..1956189 Acidithiobacillus ferrooxidans ATCC 53993 6877948 YP_002220387.1 CDS Lferr_1963 NC_011206.1 1956249 1957880 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1956249..1957880 Acidithiobacillus ferrooxidans ATCC 53993 6877949 YP_002220388.1 CDS Lferr_1964 NC_011206.1 1957896 1958258 D KEGG: gur:Gura_2893 hypothetical protein; hypothetical protein 1957896..1958258 Acidithiobacillus ferrooxidans ATCC 53993 6877950 YP_002220389.1 CDS Lferr_1965 NC_011206.1 1958388 1960931 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sat:SYN_02760 Mg(2+) transport ATPase, P-type; magnesium-translocating P-type ATPase 1958388..1960931 Acidithiobacillus ferrooxidans ATCC 53993 6877952 YP_002220390.1 CDS Lferr_1966 NC_011206.1 1961189 1961779 D PFAM: cytochrome B561; KEGG: bpt:Bpet1668 cytochrome b561 family protein; cytochrome B561 1961189..1961779 Acidithiobacillus ferrooxidans ATCC 53993 6877953 YP_002220391.1 CDS Lferr_1967 NC_011206.1 1962519 1963313 D PFAM: protein of unknown function DUF347; KEGG: acr:Acry_2739 protein of unknown function DUF347; hypothetical protein 1962519..1963313 Acidithiobacillus ferrooxidans ATCC 53993 6877954 YP_002220392.1 CDS Lferr_1968 NC_011206.1 1963714 1965030 D PFAM: major facilitator superfamily MFS_1; KEGG: ppg:PputGB1_5122 major facilitator superfamily MFS_1; major facilitator superfamily protein 1963714..1965030 Acidithiobacillus ferrooxidans ATCC 53993 6877955 YP_002220393.1 CDS Lferr_1969 NC_011206.1 1964912 1965838 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_0457 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1964912..1965838) Acidithiobacillus ferrooxidans ATCC 53993 6877956 YP_002220394.1 CDS Lferr_1970 NC_011206.1 1966393 1968288 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: azo:azo3227 RNA polymerase sigma factor RpoD; RNA polymerase sigma-70 subunit RpoD complement(1966393..1968288) Acidithiobacillus ferrooxidans ATCC 53993 6877958 YP_002220395.1 CDS Lferr_1971 NC_011206.1 1968390 1970141 R KEGG: asa:ASA_3462 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase complement(1968390..1970141) Acidithiobacillus ferrooxidans ATCC 53993 6877959 YP_002220396.1 CDS Lferr_1972 NC_011206.1 1970145 1972469 R PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: pca:Pcar_2680 mismatch repair ATPase (MutS family); DNA mismatch repair protein MutS domain-containing protein complement(1970145..1972469) Acidithiobacillus ferrooxidans ATCC 53993 6877960 YP_002220397.1 CDS Lferr_1973 NC_011206.1 1972481 1972927 R KEGG: mms:mma_0491 hypothetical protein; hypothetical protein complement(1972481..1972927) Acidithiobacillus ferrooxidans ATCC 53993 6877961 YP_002220398.1 CDS rpsU NC_011206.1 1972927 1973142 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1972927..1973142) Acidithiobacillus ferrooxidans ATCC 53993 6877962 YP_002220399.1 CDS Lferr_1975 NC_011206.1 1973431 1974288 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: slo:Shew_1213 RNA polymerase, sigma 70 subunit, RpoD family; RNA polymerase sigma-32 subunit RpoH 1973431..1974288 Acidithiobacillus ferrooxidans ATCC 53993 6877963 YP_002220400.1 CDS Lferr_1976 NC_011206.1 1974255 1974878 R TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: ecs:ECs3830 putative deoxyribonucleotide triphosphate pyrophosphatase; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase complement(1974255..1974878) Acidithiobacillus ferrooxidans ATCC 53993 6877964 YP_002220401.1 CDS Lferr_1977 NC_011206.1 1974875 1975603 R KEGG: cvi:CV_3847 tRNA nucleotidyltransferase; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH complement(1974875..1975603) Acidithiobacillus ferrooxidans ATCC 53993 6877965 YP_002220402.1 CDS Lferr_1978 NC_011206.1 1975743 1976237 D PFAM: cyclic nucleotide-binding; KEGG: tcx:Tcr_1127 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein 1975743..1976237 Acidithiobacillus ferrooxidans ATCC 53993 6877966 YP_002220403.1 CDS Lferr_1979 NC_011206.1 1976264 1976821 R PFAM: peptidase S16 lon domain protein; KEGG: aeh:Mlg_0602 peptidase S16, lon domain protein; peptidase S16 lon domain-containing protein complement(1976264..1976821) Acidithiobacillus ferrooxidans ATCC 53993 6877967 YP_002220404.1 CDS Lferr_1980 NC_011206.1 1976846 1978003 D KEGG: rfr:Rfer_1631 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 1976846..1978003 Acidithiobacillus ferrooxidans ATCC 53993 6877968 YP_002220405.1 CDS Lferr_1981 NC_011206.1 1978018 1978329 R KEGG: maq:Maqu_3831 hypothetical protein; hypothetical protein complement(1978018..1978329) Acidithiobacillus ferrooxidans ATCC 53993 6877969 YP_002220406.1 CDS Lferr_1982 NC_011206.1 1978341 1979147 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: xac:XAC1014 pseudouridylate synthase; pseudouridine synthase 1978341..1979147 Acidithiobacillus ferrooxidans ATCC 53993 6877970 YP_002220407.1 CDS Lferr_1983 NC_011206.1 1979263 1979421 D hypothetical protein 1979263..1979421 Acidithiobacillus ferrooxidans ATCC 53993 6877971 YP_002220408.1 CDS Lferr_1984 NC_011206.1 1979647 1981182 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: vvy:VVA0679 permease; EmrB/QacA subfamily drug resistance transporter 1979647..1981182 Acidithiobacillus ferrooxidans ATCC 53993 6877972 YP_002220409.1 CDS Lferr_1985 NC_011206.1 1981192 1982145 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: hch:HCH_05839 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(1981192..1982145) Acidithiobacillus ferrooxidans ATCC 53993 6877973 YP_002220410.1 CDS Lferr_1986 NC_011206.1 1982319 1983074 D PFAM: protein of unknown function DUF81; KEGG: tbd:Tbd_2380 hypothetical protein; hypothetical protein 1982319..1983074 Acidithiobacillus ferrooxidans ATCC 53993 6877974 YP_002220411.1 CDS Lferr_1987 NC_011206.1 1983090 1984097 D PFAM: O-methyltransferase family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_3231 methyltransferase type 12; type 11 methyltransferase 1983090..1984097 Acidithiobacillus ferrooxidans ATCC 53993 6877975 YP_002220412.1 CDS Lferr_1988 NC_011206.1 1984446 1988297 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(1984446..1988297) Acidithiobacillus ferrooxidans ATCC 53993 6877977 YP_002220413.1 CDS Lferr_1989 NC_011206.1 1988368 1989090 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(1988368..1989090) Acidithiobacillus ferrooxidans ATCC 53993 6877978 YP_002220414.1 CDS Lferr_1990 NC_011206.1 1989087 1990394 R TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: sfu:Sfum_0660 adenylosuccinate lyase; adenylosuccinate lyase complement(1989087..1990394) Acidithiobacillus ferrooxidans ATCC 53993 6877979 YP_002220415.1 CDS Lferr_1991 NC_011206.1 1990391 1991524 R KEGG: tbd:Tbd_1099 uncharacterized lipoprotein; hypothetical protein complement(1990391..1991524) Acidithiobacillus ferrooxidans ATCC 53993 6877980 YP_002220416.1 CDS Lferr_1992 NC_011206.1 1991562 1992437 R TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: noc:Noc_2524 dihydrodipicolinate synthase subfamily; dihydrodipicolinate synthase complement(1991562..1992437) Acidithiobacillus ferrooxidans ATCC 53993 6877981 YP_002220417.1 CDS Lferr_1993 NC_011206.1 1992710 1993387 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: bpt:Bpet3230 hemolysin III; hemolysin III family channel protein complement(1992710..1993387) Acidithiobacillus ferrooxidans ATCC 53993 6877983 YP_002220418.1 CDS Lferr_1994 NC_011206.1 1993438 1994766 R PFAM: cell wall hydrolase/autolysin; KEGG: noc:Noc_0337 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(1993438..1994766) Acidithiobacillus ferrooxidans ATCC 53993 6877984 YP_002220419.1 CDS Lferr_1995 NC_011206.1 1994852 1995286 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: nmu:Nmul_A0053 thioredoxin; thioredoxin complement(1994852..1995286) Acidithiobacillus ferrooxidans ATCC 53993 6877985 YP_002220420.1 CDS Lferr_1996 NC_011206.1 1995317 1995601 R TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: eba:ebA1054 glutaredoxin protein; glutaredoxin 3 complement(1995317..1995601) Acidithiobacillus ferrooxidans ATCC 53993 6877986 YP_002220421.1 CDS Lferr_1997 NC_011206.1 1995601 1996026 R PFAM: Rhodanese domain protein; KEGG: azo:azo2810 hypothetical protein; rhodanese domain-containing protein complement(1995601..1996026) Acidithiobacillus ferrooxidans ATCC 53993 6877987 YP_002220422.1 CDS Lferr_1998 NC_011206.1 1996030 1996251 R KEGG: dar:Daro_3342 hypothetical protein; hypothetical protein complement(1996030..1996251) Acidithiobacillus ferrooxidans ATCC 53993 6877988 YP_002220423.1 CDS Lferr_1999 NC_011206.1 1996258 1999536 R PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_0455 acriflavin resistance protein; acriflavin resistance protein complement(1996258..1999536) Acidithiobacillus ferrooxidans ATCC 53993 6877989 YP_002220424.1 CDS Lferr_2000 NC_011206.1 1999529 2000611 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tcx:Tcr_0454 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1999529..2000611) Acidithiobacillus ferrooxidans ATCC 53993 6877990 YP_002220425.1 CDS Lferr_2001 NC_011206.1 2000608 2002029 R PFAM: outer membrane efflux protein; KEGG: tcx:Tcr_0453 outer membrane efflux protein; outer membrane efflux protein complement(2000608..2002029) Acidithiobacillus ferrooxidans ATCC 53993 6877991 YP_002220426.1 CDS Lferr_2002 NC_011206.1 2002277 2002579 R PFAM: regulatory protein ArsR; KEGG: tbd:Tbd_2395 putative transcriptional regulator, ArsR family; arsR family transcriptional regulator complement(2002277..2002579) Acidithiobacillus ferrooxidans ATCC 53993 6877992 YP_002220427.1 CDS Lferr_2003 NC_011206.1 2003301 2004914 R TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: eba:ebA2607 type I site-specific deoxyribonuclease, methylase subunit; type I restriction-modification system, M subunit complement(2003301..2004914) Acidithiobacillus ferrooxidans ATCC 53993 6877994 YP_002220428.1 CDS Lferr_2004 NC_011206.1 2004911 2005114 R KEGG: dac:Daci_2436 hypothetical protein; hypothetical protein complement(2004911..2005114) Acidithiobacillus ferrooxidans ATCC 53993 6877995 YP_002220429.1 CDS Lferr_2005 NC_011206.1 2005111 2006289 R anticodon nuclease complement(2005111..2006289) Acidithiobacillus ferrooxidans ATCC 53993 6877996 YP_002220430.1 CDS Lferr_2006 NC_011206.1 2006286 2006381 R hypothetical protein complement(2006286..2006381) Acidithiobacillus ferrooxidans ATCC 53993 6877997 YP_002220431.1 CDS Lferr_2007 NC_011206.1 2006381 2009545 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mfa:Mfla_1218 DEAD/DEAH box helicase-like protein; DEAD/DEAH box helicase complement(2006381..2009545) Acidithiobacillus ferrooxidans ATCC 53993 6877998 YP_002220432.1 CDS Lferr_2008 NC_011206.1 2009542 2010330 R KEGG: mfa:Mfla_1217 hypothetical protein; hypothetical protein complement(2009542..2010330) Acidithiobacillus ferrooxidans ATCC 53993 6877999 YP_002220433.1 CDS Lferr_2009 NC_011206.1 2010327 2011598 R PFAM: restriction modification system DNA specificity domain; KEGG: mfa:Mfla_1216 restriction modification system DNA specificity domain; restriction modification system DNA specificity protein complement(2010327..2011598) Acidithiobacillus ferrooxidans ATCC 53993 6878000 YP_002220434.1 CDS Lferr_2010 NC_011206.1 2011595 2011951 R hypothetical protein complement(2011595..2011951) Acidithiobacillus ferrooxidans ATCC 53993 6878001 YP_002220435.1 CDS Lferr_2011 NC_011206.1 2011948 2012562 R KEGG: dde:Dde_2494 hypothetical protein; transcriptional regulator complement(2011948..2012562) Acidithiobacillus ferrooxidans ATCC 53993 6878002 YP_002220436.1 CDS Lferr_2012 NC_011206.1 2012555 2015653 R KEGG: eba:ebA2612 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; HsdR family type I site-specific deoxyribonuclease complement(2012555..2015653) Acidithiobacillus ferrooxidans ATCC 53993 6878003 YP_002220437.1 CDS Lferr_2013 NC_011206.1 2015946 2017418 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: abo:ABO_2465 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; UbiD family decarboxylase complement(2015946..2017418) Acidithiobacillus ferrooxidans ATCC 53993 6878004 YP_002220438.1 CDS Lferr_2014 NC_011206.1 2017443 2018315 R KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transport system periplasmic component; phosphate/phosphonate ABC transporter substrate-binding protein complement(2017443..2018315) Acidithiobacillus ferrooxidans ATCC 53993 6878005 YP_002220439.1 CDS Lferr_2015 NC_011206.1 2018328 2018774 R PFAM: Sterol-binding domain protein; KEGG: aae:aq_090 hypothetical protein; Sterol-binding domain-containing protein complement(2018328..2018774) Acidithiobacillus ferrooxidans ATCC 53993 6878006 YP_002220440.1 CDS Lferr_2016 NC_011206.1 2018831 2019577 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: tbd:Tbd_0522 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD-binding protein complement(2018831..2019577) Acidithiobacillus ferrooxidans ATCC 53993 6878007 YP_002220441.1 CDS Lferr_2017 NC_011206.1 2019577 2020392 R PFAM: TatD-related deoxyribonuclease; KEGG: xcv:XCV1526 putative TatD related DNase; TatD-like deoxyribonuclease complement(2019577..2020392) Acidithiobacillus ferrooxidans ATCC 53993 6878008 YP_002220442.1 CDS Lferr_2018 NC_011206.1 2020525 2021754 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: cyb:CYB_0780 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; ubiquinone biosynthesis hydroxylase 2020525..2021754 Acidithiobacillus ferrooxidans ATCC 53993 6878009 YP_002220443.1 CDS Lferr_2019 NC_011206.1 2021744 2022931 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: xfa:XF0834 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; ubiquinone biosynthesis hydroxylase 2021744..2022931 Acidithiobacillus ferrooxidans ATCC 53993 6878010 YP_002220444.1 CDS Lferr_2020 NC_011206.1 2022943 2023206 D PFAM: protein of unknown function DUF526; KEGG: cvi:CV_4001 hypothetical protein; hypothetical protein 2022943..2023206 Acidithiobacillus ferrooxidans ATCC 53993 6878011 YP_002220445.1 CDS Lferr_2021 NC_011206.1 2023210 2024031 D PFAM: magnesium chelatase ChlI subunit; KEGG: psa:PST_0500 magnesium chelatase, subunit D/I family; magnesium chelatase ChlI subunit 2023210..2024031 Acidithiobacillus ferrooxidans ATCC 53993 6878012 YP_002220446.1 CDS Lferr_2022 NC_011206.1 2024173 2026017 D KEGG: bxe:Bxe_A1802 hypothetical protein; hypothetical protein 2024173..2026017 Acidithiobacillus ferrooxidans ATCC 53993 6878013 YP_002220447.1 CDS Lferr_2023 NC_011206.1 2026180 2026680 D PFAM: transposase IS3/IS911 family protein; KEGG: shw:Sputw3181_2067 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2026180..2026680 Acidithiobacillus ferrooxidans ATCC 53993 6878014 YP_002220448.1 CDS Lferr_2024 NC_011206.1 2026815 2027165 D KEGG: sbl:Sbal_4350 integrase, catalytic region; integrase catalytic subunit 2026815..2027165 Acidithiobacillus ferrooxidans ATCC 53993 6878015 YP_002220449.1 CDS Lferr_2026 NC_011206.1 2029689 2030582 D PFAM: integrase domain protein SAM domain protein; KEGG: pol:Bpro_0711 phage integrase; integrase domain-containing SAM domain-containing protein 2029689..2030582 Acidithiobacillus ferrooxidans ATCC 53993 6878017 YP_002220450.1 CDS Lferr_2027 NC_011206.1 2030631 2031458 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B267 transposition helper protein; IstB domain-containing ATP-binding protein complement(2030631..2031458) Acidithiobacillus ferrooxidans ATCC 53993 6878018 YP_002220451.1 CDS Lferr_2028 NC_011206.1 2031455 2032939 R PFAM: Integrase catalytic region; KEGG: eba:p2A256 transposase; integrase catalytic subunit complement(2031455..2032939) Acidithiobacillus ferrooxidans ATCC 53993 6878019 YP_002220452.1 CDS Lferr_2030 NC_011206.1 2033439 2034380 D PFAM: integrase family protein; KEGG: pol:Bpro_0712 phage integrase; integrase family protein 2033439..2034380 Acidithiobacillus ferrooxidans ATCC 53993 6878021 YP_002220453.1 CDS Lferr_2031 NC_011206.1 2034373 2035371 D PFAM: integrase family protein; KEGG: pol:Bpro_0713 phage integrase; integrase family protein 2034373..2035371 Acidithiobacillus ferrooxidans ATCC 53993 6878022 YP_002220454.1 CDS Lferr_2032 NC_011206.1 2035446 2036309 R KEGG: rme:Rmet_6335 integrase, catalytic region; integrase catalytic subunit complement(2035446..2036309) Acidithiobacillus ferrooxidans ATCC 53993 6878023 YP_002220455.1 CDS Lferr_2033 NC_011206.1 2036440 2036988 R KEGG: bxe:Bxe_C0711 hypothetical protein; hypothetical protein complement(2036440..2036988) Acidithiobacillus ferrooxidans ATCC 53993 6878024 YP_002220456.1 CDS Lferr_2034 NC_011206.1 2037111 2038118 R KEGG: lpf:lpl2288 hypothetical protein; hypothetical protein complement(2037111..2038118) Acidithiobacillus ferrooxidans ATCC 53993 6878025 YP_002220457.1 CDS Lferr_2035 NC_011206.1 2038987 2039340 D KEGG: mpt:Mpe_B0470 hypothetical protein; hypothetical protein 2038987..2039340 Acidithiobacillus ferrooxidans ATCC 53993 6878026 YP_002220458.1 CDS Lferr_2036 NC_011206.1 2039633 2039908 R KEGG: rme:Rmet_5954 integrase, catalytic region; hypothetical protein complement(2039633..2039908) Acidithiobacillus ferrooxidans ATCC 53993 6878027 YP_002220459.1 CDS Lferr_2037 NC_011206.1 2040224 2040415 D hypothetical protein 2040224..2040415 Acidithiobacillus ferrooxidans ATCC 53993 6878028 YP_002220460.1 CDS Lferr_2038 NC_011206.1 2040904 2042304 D KEGG: gme:Gmet_1436 hypothetical protein; hypothetical protein 2040904..2042304 Acidithiobacillus ferrooxidans ATCC 53993 6878029 YP_002220461.1 CDS Lferr_2039 NC_011206.1 2042314 2044743 D PFAM: DNA primase small subunit; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ecs:ECs1305 hypothetical protein; type III restriction protein res subunit 2042314..2044743 Acidithiobacillus ferrooxidans ATCC 53993 6878030 YP_002220462.1 CDS Lferr_2040 NC_011206.1 2045280 2045765 R PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_0582 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2045280..2045765) Acidithiobacillus ferrooxidans ATCC 53993 6878031 YP_002220463.1 CDS Lferr_2041 NC_011206.1 2045801 2045995 R hypothetical protein complement(2045801..2045995) Acidithiobacillus ferrooxidans ATCC 53993 6878032 YP_002220464.1 CDS Lferr_2042 NC_011206.1 2045999 2046475 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2045999..2046475) Acidithiobacillus ferrooxidans ATCC 53993 6878033 YP_002220465.1 CDS Lferr_2043 NC_011206.1 2046552 2048729 R PFAM: PEP-utilising protein mobile region; KEGG: nmu:Nmul_A1613 pyruvate, water dikinase; PEP-utilizing protein mobile subunit complement(2046552..2048729) Acidithiobacillus ferrooxidans ATCC 53993 6878034 YP_002220466.1 CDS Lferr_2044 NC_011206.1 2048818 2049480 R PFAM: IstB domain protein ATP-binding protein; KEGG: eba:ebA3781 transposition helper protein; IstB domain-containing ATP-binding protein complement(2048818..2049480) Acidithiobacillus ferrooxidans ATCC 53993 6878035 YP_002220467.1 CDS Lferr_2045 NC_011206.1 2049759 2050040 D PFAM: protein of unknown function DUF497; KEGG: gur:Gura_1009 protein of unknown function DUF497; hypothetical protein 2049759..2050040 Acidithiobacillus ferrooxidans ATCC 53993 6878036 YP_002220468.1 CDS Lferr_2046 NC_011206.1 2050037 2050279 D KEGG: gur:Gura_0787 CopG domain protein DNA-binding domain protein; CopG domain-containing DNA-binding domain-containing protein 2050037..2050279 Acidithiobacillus ferrooxidans ATCC 53993 6878037 YP_002220469.1 CDS Lferr_2047 NC_011206.1 2050487 2051245 D KEGG: mbu:Mbur_0157 AAA ATPase; transcriptional regulator 2050487..2051245 Acidithiobacillus ferrooxidans ATCC 53993 6878038 YP_002220470.1 CDS Lferr_2048 NC_011206.1 2051336 2052133 D KEGG: bbt:BBta_1233 hypothetical protein; hypothetical protein 2051336..2052133 Acidithiobacillus ferrooxidans ATCC 53993 6878039 YP_002220471.1 CDS Lferr_2049 NC_011206.1 2052805 2054280 R PFAM: plasmid recombination protein; KEGG: tva:TVAG_110290 viral A-type inclusion protein, putative Pfam: XLF HSBP1 Baculo_PEP_C Ribosomal_LX EzrA Syntaxin Syntaxin-6_N TSC22 Rad50_zn_hook Spectrin Laminin_I Prefoldin THOC7 TBPIP Seryl_tRNA_N DUF593 DUF148 TACC PspA_IM30 Rab5-bind M Myosin_tail_1 Troponin Filament Tektin Tup_N Phage_GP20 GBP_C DUF827 MAP65_ASE1 Alpha-2-MRAP_C Fez1 BRE1 Prefoldin_2 FlgM Ribosomal_L30_N Laminin_II Microtub_assoc; plasmid recombination protein complement(2052805..2054280) Acidithiobacillus ferrooxidans ATCC 53993 6878040 YP_002220472.1 CDS Lferr_2050 NC_011206.1 2054512 2055513 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nar:Saro_3052 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(2054512..2055513) Acidithiobacillus ferrooxidans ATCC 53993 6878041 YP_002220473.1 CDS Lferr_2051 NC_011206.1 2055613 2056089 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: vei:Veis_2831 putative transcriptional regulator, MerR family; merR family transcriptional regulator 2055613..2056089 Acidithiobacillus ferrooxidans ATCC 53993 6878042 YP_002220474.1 CDS Lferr_2052 NC_011206.1 2056102 2056752 R PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aeh:Mlg_0626 methyltransferase type 11; type 11 methyltransferase complement(2056102..2056752) Acidithiobacillus ferrooxidans ATCC 53993 6878043 YP_002220475.1 CDS Lferr_2053 NC_011206.1 2056769 2057260 R TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: bte:BTH_I3307 ATP synthase F1, epsilon subunit; ATP synthase F1 subunit epsilon complement(2056769..2057260) Acidithiobacillus ferrooxidans ATCC 53993 6878044 YP_002220476.1 CDS Lferr_2054 NC_011206.1 2057385 2058011 R PFAM: cation efflux protein; KEGG: noc:Noc_1534 cation efflux protein; cation efflux protein complement(2057385..2058011) Acidithiobacillus ferrooxidans ATCC 53993 6878045 YP_002220477.1 CDS Lferr_2055 NC_011206.1 2058187 2058399 D hypothetical protein 2058187..2058399 Acidithiobacillus ferrooxidans ATCC 53993 6878046 YP_002220478.1 CDS Lferr_2056 NC_011206.1 2058548 2058856 R hypothetical protein complement(2058548..2058856) Acidithiobacillus ferrooxidans ATCC 53993 6878047 YP_002220479.1 CDS Lferr_2057 NC_011206.1 2058972 2059334 R KEGG: tbd:Tbd_1332 hypothetical protein; hypothetical protein complement(2058972..2059334) Acidithiobacillus ferrooxidans ATCC 53993 6878048 YP_002220480.1 CDS Lferr_2058 NC_011206.1 2059463 2060218 R PFAM: cytochrome B561; KEGG: tbd:Tbd_0139 cytochrome b, putative; cytochrome B561 complement(2059463..2060218) Acidithiobacillus ferrooxidans ATCC 53993 6878049 YP_002220481.1 CDS Lferr_2059 NC_011206.1 2060277 2060966 R PFAM: protein of unknown function DUF124; KEGG: mlo:mlr0194 hypothetical protein; hypothetical protein complement(2060277..2060966) Acidithiobacillus ferrooxidans ATCC 53993 6878050 YP_002220482.1 CDS Lferr_2060 NC_011206.1 2061034 2064144 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: mmr:Mmar10_0178 putative cation efflux system transmembrane protein; CzcA family heavy metal efflux pump complement(2061034..2064144) Acidithiobacillus ferrooxidans ATCC 53993 6878051 YP_002220483.1 CDS Lferr_2061 NC_011206.1 2064137 2065585 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aha:AHA_2962 copper/silver resistance periplasmic protein; RND family efflux transporter MFP subunit complement(2064137..2065585) Acidithiobacillus ferrooxidans ATCC 53993 6878052 YP_002220484.1 CDS Lferr_2062 NC_011206.1 2065582 2066892 R PFAM: outer membrane efflux protein; KEGG: lpc:LPC_2241 hypothetical protein; outer membrane efflux protein complement(2065582..2066892) Acidithiobacillus ferrooxidans ATCC 53993 6878053 YP_002220485.1 CDS Lferr_2063 NC_011206.1 2066989 2067501 D hypothetical protein 2066989..2067501 Acidithiobacillus ferrooxidans ATCC 53993 6878054 YP_002220486.1 CDS Lferr_2065 NC_011206.1 2068038 2068301 D KEGG: pna:Pnap_0935 hypothetical protein; hypothetical protein 2068038..2068301 Acidithiobacillus ferrooxidans ATCC 53993 6878056 YP_002220487.1 CDS Lferr_2066 NC_011206.1 2068441 2070465 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: tbd:Tbd_2740 heavy metal translocating P-type ATPase; copper-translocating P-type ATPase 2068441..2070465 Acidithiobacillus ferrooxidans ATCC 53993 6878057 YP_002220488.1 CDS Lferr_2068 NC_011206.1 2071072 2071383 R KEGG: rme:Rmet_1360 hypothetical protein; hypothetical protein complement(2071072..2071383) Acidithiobacillus ferrooxidans ATCC 53993 6878059 YP_002220489.1 CDS Lferr_2070 NC_011206.1 2072276 2072557 D hypothetical protein 2072276..2072557 Acidithiobacillus ferrooxidans ATCC 53993 6878061 YP_002220490.1 CDS Lferr_2071 NC_011206.1 2072521 2073012 D hypothetical protein 2072521..2073012 Acidithiobacillus ferrooxidans ATCC 53993 6878062 YP_002220491.1 CDS Lferr_2073 NC_011206.1 2074194 2074589 D PFAM: protein of unknown function DUF302; KEGG: tbd:Tbd_2156 hypothetical protein; hypothetical protein 2074194..2074589 Acidithiobacillus ferrooxidans ATCC 53993 6878064 YP_002220492.1 CDS Lferr_2074 NC_011206.1 2074651 2074857 D PFAM: Heavy metal transport/detoxification protein; KEGG: ttj:TTHA1718 heavy metal binding protein; heavy metal transport/detoxification protein 2074651..2074857 Acidithiobacillus ferrooxidans ATCC 53993 6878065 YP_002220493.1 CDS Lferr_2075 NC_011206.1 2074862 2075101 D PFAM: glutaredoxin; glutaredoxin 2; KEGG: oan:Oant_3239 glutaredoxin; glutaredoxin 2074862..2075101 Acidithiobacillus ferrooxidans ATCC 53993 6878066 YP_002220494.1 CDS Lferr_2076 NC_011206.1 2075126 2075548 D PFAM: cytochrome c class I; KEGG: rfr:Rfer_2468 cytochrome c, class I; cytochrome c class I 2075126..2075548 Acidithiobacillus ferrooxidans ATCC 53993 6878067 YP_002220495.1 CDS Lferr_2077 NC_011206.1 2075947 2076684 R KEGG: gur:Gura_3178 hypothetical protein; hypothetical protein complement(2075947..2076684) Acidithiobacillus ferrooxidans ATCC 53993 6878068 YP_002220496.1 CDS Lferr_2078 NC_011206.1 2076870 2078471 R TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: mxa:MXAN_5112 Na+/H+ antiporter; Na+/H+ antiporter complement(2076870..2078471) Acidithiobacillus ferrooxidans ATCC 53993 6878069 YP_002220497.1 CDS Lferr_2079 NC_011206.1 2078592 2078858 R hypothetical protein complement(2078592..2078858) Acidithiobacillus ferrooxidans ATCC 53993 6878070 YP_002220498.1 CDS Lferr_2080 NC_011206.1 2079555 2080874 D KEGG: sma:SAV256 transposase; hypothetical protein 2079555..2080874 Acidithiobacillus ferrooxidans ATCC 53993 6878071 YP_002220499.1 CDS Lferr_2081 NC_011206.1 2080996 2081310 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 2080996..2081310 Acidithiobacillus ferrooxidans ATCC 53993 6878072 YP_002220500.1 CDS Lferr_2082 NC_011206.1 2081672 2083291 R PFAM: amino acid permease-associated region; KEGG: bur:Bcep18194_C6568 putative amino acid transporter; amino acid permease-associated protein complement(2081672..2083291) Acidithiobacillus ferrooxidans ATCC 53993 6878073 YP_002220501.1 CDS Lferr_2083 NC_011206.1 2083316 2083798 R hypothetical protein complement(2083316..2083798) Acidithiobacillus ferrooxidans ATCC 53993 6878074 YP_002220502.1 CDS Lferr_2084 NC_011206.1 2083801 2084160 R hypothetical protein complement(2083801..2084160) Acidithiobacillus ferrooxidans ATCC 53993 6878075 YP_002220503.1 CDS Lferr_2085 NC_011206.1 2084219 2084518 R hypothetical protein complement(2084219..2084518) Acidithiobacillus ferrooxidans ATCC 53993 6878076 YP_002220504.1 CDS Lferr_2086 NC_011206.1 2084515 2084886 R PFAM: nitrogen regulatory protein P-II; KEGG: bbr:BB2510 nitrogen regulatory protein; nitrogen regulatory protein P-II complement(2084515..2084886) Acidithiobacillus ferrooxidans ATCC 53993 6878077 YP_002220505.1 CDS Lferr_2087 NC_011206.1 2084944 2086134 R KEGG: mrd:Mrad2831_2268 hypothetical protein; hypothetical protein complement(2084944..2086134) Acidithiobacillus ferrooxidans ATCC 53993 6878078 YP_002220506.1 CDS Lferr_2088 NC_011206.1 2086214 2087212 R KEGG: pmy:Pmen_3679 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; glutamate 5-kinase complement(2086214..2087212) Acidithiobacillus ferrooxidans ATCC 53993 6878079 YP_002220507.1 CDS Lferr_2089 NC_011206.1 2087366 2088922 R PFAM: RimK domain protein ATP-grasp; KEGG: pau:PA14_39390 ribosomal protein S6 modification enzyme; RimK domain-containing protein complement(2087366..2088922) Acidithiobacillus ferrooxidans ATCC 53993 6878080 YP_002220508.1 CDS Lferr_2091 NC_011206.1 2089336 2089668 D KEGG: bpt:Bpet1150 hypothetical protein; hypothetical protein 2089336..2089668 Acidithiobacillus ferrooxidans ATCC 53993 6878082 YP_002220509.1 CDS Lferr_2092 NC_011206.1 2089659 2090006 D PFAM: IS66 Orf2 family protein; KEGG: bte:BTH_I2736 TnpB protein; IS66 Orf2 family protein 2089659..2090006 Acidithiobacillus ferrooxidans ATCC 53993 6878083 YP_002220510.1 CDS Lferr_2093 NC_011206.1 2090056 2091693 D PFAM: transposase IS66; KEGG: bte:BTH_I1449 TnpC protein; transposase IS66 2090056..2091693 Acidithiobacillus ferrooxidans ATCC 53993 6878084 YP_002220511.1 CDS Lferr_2095 NC_011206.1 2091977 2092168 R hypothetical protein complement(2091977..2092168) Acidithiobacillus ferrooxidans ATCC 53993 6878086 YP_002220512.1 CDS Lferr_2096 NC_011206.1 2092206 2092487 R PFAM: histone family protein DNA-binding protein; KEGG: sse:Ssed_0600 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(2092206..2092487) Acidithiobacillus ferrooxidans ATCC 53993 6878087 YP_002220513.1 CDS Lferr_2097 NC_011206.1 2092433 2092657 R KEGG: rpc:RPC_2258 hypothetical protein; hypothetical protein complement(2092433..2092657) Acidithiobacillus ferrooxidans ATCC 53993 6878088 YP_002220514.1 CDS Lferr_2098 NC_011206.1 2092799 2093110 R hypothetical protein complement(2092799..2093110) Acidithiobacillus ferrooxidans ATCC 53993 6878089 YP_002220515.1 CDS Lferr_2099 NC_011206.1 2093110 2093277 R hypothetical protein complement(2093110..2093277) Acidithiobacillus ferrooxidans ATCC 53993 6878090 YP_002220516.1 CDS Lferr_2100 NC_011206.1 2093274 2093897 R KEGG: bbr:BB3919 potassium-transporting ATPase subunit C; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C complement(2093274..2093897) Acidithiobacillus ferrooxidans ATCC 53993 6878091 YP_002220517.1 CDS Lferr_2101 NC_011206.1 2093910 2095979 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: eca:ECA1341 potassium-transporting ATPase subunit B; K+-transporting ATPase subunit B complement(2093910..2095979) Acidithiobacillus ferrooxidans ATCC 53993 6878092 YP_002220518.1 CDS Lferr_2102 NC_011206.1 2095993 2097744 R KEGG: rme:Rmet_0038 potassium-transporting ATPase subunit A; TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A complement(2095993..2097744) Acidithiobacillus ferrooxidans ATCC 53993 6878093 YP_002220519.1 CDS Lferr_2103 NC_011206.1 2097741 2097833 R TIGRFAM: K+-transporting ATPase, F subunit; K+-transporting ATPase subunit F complement(2097741..2097833) Acidithiobacillus ferrooxidans ATCC 53993 6878094 YP_002220520.1 CDS Lferr_2104 NC_011206.1 2098130 2099881 R KEGG: cvi:CV_1599 potassium-transporting ATPase subunit A; TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A complement(2098130..2099881) Acidithiobacillus ferrooxidans ATCC 53993 6878095 YP_002220521.1 CDS Lferr_2106 NC_011206.1 2100606 2101040 D PFAM: MerC mercury resistance protein; KEGG: neu:NE0840 putative mercury transport protein; mercury transport protein MerC 2100606..2101040 Acidithiobacillus ferrooxidans ATCC 53993 6878097 YP_002220522.1 CDS Lferr_2107 NC_011206.1 2101066 2102709 D TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: ppw:PputW619_2338 mercuric reductase; mercuric reductase 2101066..2102709 Acidithiobacillus ferrooxidans ATCC 53993 6878098 YP_002220523.1 CDS Lferr_2108 NC_011206.1 2102733 2104811 D PFAM: glycoside hydrolase 15-related; Glucodextranase N; KEGG: nha:Nham_0995 glucan 1,4-alpha-glucosidase; glucan 1,4-alpha-glucosidase 2102733..2104811 Acidithiobacillus ferrooxidans ATCC 53993 6878099 YP_002220524.1 CDS Lferr_2109 NC_011206.1 2104814 2105179 D TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein MerR; KEGG: pap:PSPA7_0105 mercuric resistence transcriptional repressor protein MerD; transcriptional regulator MerD 2104814..2105179 Acidithiobacillus ferrooxidans ATCC 53993 6878100 YP_002220525.1 CDS Lferr_2112 NC_011206.1 2106173 2106661 R hypothetical protein complement(2106173..2106661) Acidithiobacillus ferrooxidans ATCC 53993 6878103 YP_002220526.1 CDS Lferr_2113 NC_011206.1 2106606 2106932 R KEGG: ttj:TTHA0655 hypothetical protein; hypothetical protein complement(2106606..2106932) Acidithiobacillus ferrooxidans ATCC 53993 6878104 YP_002220527.1 CDS Lferr_2114 NC_011206.1 2106932 2107120 R hypothetical protein complement(2106932..2107120) Acidithiobacillus ferrooxidans ATCC 53993 6878105 YP_002220528.1 CDS Lferr_2115 NC_011206.1 2108513 2109358 D KEGG: rme:Rmet_4832 hypothetical protein; hypothetical protein 2108513..2109358 Acidithiobacillus ferrooxidans ATCC 53993 6878106 YP_002220529.1 CDS Lferr_2116 NC_011206.1 2109779 2110081 R hypothetical protein complement(2109779..2110081) Acidithiobacillus ferrooxidans ATCC 53993 6878107 YP_002220530.1 CDS Lferr_2117 NC_011206.1 2110074 2110283 R KEGG: ppd:Ppro_0139 transposase, mutator family; hypothetical protein complement(2110074..2110283) Acidithiobacillus ferrooxidans ATCC 53993 6878108 YP_002220531.1 CDS Lferr_2118 NC_011206.1 2110345 2110704 R KEGG: mfa:Mfla_2286 hypothetical protein; hypothetical protein complement(2110345..2110704) Acidithiobacillus ferrooxidans ATCC 53993 6878109 YP_002220532.1 CDS Lferr_2119 NC_011206.1 2110776 2111042 R hypothetical protein complement(2110776..2111042) Acidithiobacillus ferrooxidans ATCC 53993 6878110 YP_002220533.1 CDS Lferr_2120 NC_011206.1 2111130 2111507 R hypothetical protein complement(2111130..2111507) Acidithiobacillus ferrooxidans ATCC 53993 6878111 YP_002220534.1 CDS Lferr_2121 NC_011206.1 2111534 2111848 D hypothetical protein 2111534..2111848 Acidithiobacillus ferrooxidans ATCC 53993 6878112 YP_002220535.1 CDS Lferr_2122 NC_011206.1 2111929 2112546 R KEGG: pol:Bpro_0109 hypothetical protein; hypothetical protein complement(2111929..2112546) Acidithiobacillus ferrooxidans ATCC 53993 6878113 YP_002220536.1 CDS Lferr_2123 NC_011206.1 2112827 2113357 D hypothetical protein 2112827..2113357 Acidithiobacillus ferrooxidans ATCC 53993 6878114 YP_002220537.1 CDS Lferr_2124 NC_011206.1 2113240 2113491 R hypothetical protein complement(2113240..2113491) Acidithiobacillus ferrooxidans ATCC 53993 6878115 YP_002220538.1 CDS Lferr_2125 NC_011206.1 2113612 2113851 D hypothetical protein 2113612..2113851 Acidithiobacillus ferrooxidans ATCC 53993 6878116 YP_002220539.1 CDS Lferr_2126 NC_011206.1 2113868 2114329 D KEGG: rme:Rmet_2832 hypothetical protein; hypothetical protein 2113868..2114329 Acidithiobacillus ferrooxidans ATCC 53993 6878117 YP_002220540.1 CDS Lferr_2127 NC_011206.1 2114365 2115813 R KEGG: pst:PSPTO_0053 hypothetical protein; hypothetical protein complement(2114365..2115813) Acidithiobacillus ferrooxidans ATCC 53993 6878118 YP_002220541.1 CDS Lferr_2128 NC_011206.1 2115810 2116805 R KEGG: acb:A1S_0212 hypothetical protein; hypothetical protein complement(2115810..2116805) Acidithiobacillus ferrooxidans ATCC 53993 6878119 YP_002220542.1 CDS Lferr_2130 NC_011206.1 2117403 2117717 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(2117403..2117717) Acidithiobacillus ferrooxidans ATCC 53993 6878121 YP_002220543.1 CDS Lferr_2131 NC_011206.1 2117839 2119158 R KEGG: sma:SAV256 transposase; hypothetical protein complement(2117839..2119158) Acidithiobacillus ferrooxidans ATCC 53993 6878122 YP_002220544.1 CDS Lferr_2132 NC_011206.1 2119232 2119843 R PFAM: TniB family protein; KEGG: psp:PSPPH_0182 transposition helper protein, truncated; TniB family protein complement(2119232..2119843) Acidithiobacillus ferrooxidans ATCC 53993 6878123 YP_002220545.1 CDS Lferr_2133 NC_011206.1 2119840 2120715 R KEGG: msu:MS2016 hypothetical protein; hypothetical protein complement(2119840..2120715) Acidithiobacillus ferrooxidans ATCC 53993 6878124 YP_002220546.1 CDS Lferr_2134 NC_011206.1 2120865 2122184 D KEGG: sma:SAV256 transposase; hypothetical protein 2120865..2122184 Acidithiobacillus ferrooxidans ATCC 53993 6878125 YP_002220547.1 CDS Lferr_2135 NC_011206.1 2122306 2122620 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 2122306..2122620 Acidithiobacillus ferrooxidans ATCC 53993 6878126 YP_002220548.1 CDS Lferr_2136 NC_011206.1 2122756 2123724 R KEGG: pst:PSPTO_0058 transposase; transposase complement(2122756..2123724) Acidithiobacillus ferrooxidans ATCC 53993 6878127 YP_002220549.1 CDS Lferr_2137 NC_011206.1 2123768 2124457 R PFAM: TnsA endonuclease; KEGG: msu:MS2017 hypothetical protein; TnsA endonuclease complement(2123768..2124457) Acidithiobacillus ferrooxidans ATCC 53993 6878128 YP_002220550.1 CDS Lferr_2139 NC_011206.1 2125383 2125760 R KEGG: aae:aq_401 hypothetical protein; hypothetical protein complement(2125383..2125760) Acidithiobacillus ferrooxidans ATCC 53993 6878130 YP_002220551.1 CDS Lferr_2140 NC_011206.1 2126002 2126484 R PFAM: regulatory protein MerR; KEGG: mex:Mext_2691 Cu(I)-responsive transcriptional regulator; merR family transcriptional regulator complement(2126002..2126484) Acidithiobacillus ferrooxidans ATCC 53993 6878131 YP_002220552.1 CDS Lferr_2141 NC_011206.1 2126530 2126763 R PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(2126530..2126763) Acidithiobacillus ferrooxidans ATCC 53993 6878132 YP_002220553.1 CDS Lferr_2142 NC_011206.1 2127088 2127207 R KEGG: rme:Rmet_1498 von Willebrand factor, type A; hypothetical protein complement(2127088..2127207) Acidithiobacillus ferrooxidans ATCC 53993 6878133 YP_002220554.1 CDS Lferr_2143 NC_011206.1 2127298 2127822 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpc:LPC_1689 hypothetical protein; Sel1 domain-containing protein repeat-containing protein complement(2127298..2127822) Acidithiobacillus ferrooxidans ATCC 53993 6878134 YP_002220555.1 CDS prfC NC_011206.1 2127850 2129469 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(2127850..2129469) Acidithiobacillus ferrooxidans ATCC 53993 6878135 YP_002220556.1 CDS Lferr_2145 NC_011206.1 2129476 2129952 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC3563 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(2129476..2129952) Acidithiobacillus ferrooxidans ATCC 53993 6878136 YP_002220557.1 CDS Lferr_2146 NC_011206.1 2129954 2130622 R PFAM: peptidase M22 glycoprotease; KEGG: noc:Noc_0917 peptidase M22, glycoprotease; peptidase M22 glycoprotease complement(2129954..2130622) Acidithiobacillus ferrooxidans ATCC 53993 6878137 YP_002220558.1 CDS Lferr_2147 NC_011206.1 2130622 2132547 R SMART: helicase c2; DEAD-like helicases; KEGG: noc:Noc_1364 helicase C2; helicase c2 complement(2130622..2132547) Acidithiobacillus ferrooxidans ATCC 53993 6878138 YP_002220559.1 CDS Lferr_2148 NC_011206.1 2132617 2132979 D hypothetical protein 2132617..2132979 Acidithiobacillus ferrooxidans ATCC 53993 6878139 YP_002220560.1 CDS Lferr_2149 NC_011206.1 2133192 2134289 R PFAM: NLP/P60 protein; KEGG: bvi:Bcep1808_1793 NLP/P60 protein; NLP/P60 protein complement(2133192..2134289) Acidithiobacillus ferrooxidans ATCC 53993 6878140 YP_002220561.1 CDS Lferr_2150 NC_011206.1 2134790 2136046 D PFAM: Carbohydrate-selective porin OprB; KEGG: mag:amb3444 carbohydrate-selective porin; carbohydrate-selective porin OprB 2134790..2136046 Acidithiobacillus ferrooxidans ATCC 53993 6878141 YP_002220562.1 CDS Lferr_2151 NC_011206.1 2136079 2136366 D PFAM: FeoA family protein; KEGG: dau:Daud_1952 FeoA family protein; FeoA family protein 2136079..2136366 Acidithiobacillus ferrooxidans ATCC 53993 6878142 YP_002220563.1 CDS Lferr_2152 NC_011206.1 2136363 2138711 D TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: rru:Rru_A2470 ferrous iron transport protein B; ferrous iron transport protein B 2136363..2138711 Acidithiobacillus ferrooxidans ATCC 53993 6878143 YP_002220564.1 CDS Lferr_2153 NC_011206.1 2138708 2139007 D hypothetical protein 2138708..2139007 Acidithiobacillus ferrooxidans ATCC 53993 6878144 YP_002220565.1 CDS Lferr_2154 NC_011206.1 2139105 2139977 D TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pla:Plav_1141 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; N-carbamoylputrescine amidase 2139105..2139977 Acidithiobacillus ferrooxidans ATCC 53993 6878145 YP_002220566.1 CDS Lferr_2155 NC_011206.1 2139970 2140722 D PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: mta:Moth_2164 peptidase C26; peptidase C26 2139970..2140722 Acidithiobacillus ferrooxidans ATCC 53993 6878146 YP_002220567.1 CDS Lferr_2156 NC_011206.1 2140719 2141366 R PFAM: SNARE associated Golgi protein; KEGG: azo:azo0922 DedA protein; hypothetical protein complement(2140719..2141366) Acidithiobacillus ferrooxidans ATCC 53993 6878147 YP_002220568.1 CDS Lferr_2157 NC_011206.1 2141398 2141754 R KEGG: mgm:Mmc1_2466 hypothetical protein; hypothetical protein complement(2141398..2141754) Acidithiobacillus ferrooxidans ATCC 53993 6878148 YP_002220569.1 CDS Lferr_2158 NC_011206.1 2141751 2142503 R KEGG: cbd:COXBU7E912_0817 glutamine amidotransferase, class I; GMP synthase complement(2141751..2142503) Acidithiobacillus ferrooxidans ATCC 53993 6878149 YP_002220570.1 CDS Lferr_2159 NC_011206.1 2142505 2143431 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: tcx:Tcr_1555 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2142505..2143431) Acidithiobacillus ferrooxidans ATCC 53993 6878150 YP_002220571.1 CDS Lferr_2160 NC_011206.1 2143516 2144118 D hypothetical protein 2143516..2144118 Acidithiobacillus ferrooxidans ATCC 53993 6878151 YP_002220572.1 CDS Lferr_2161 NC_011206.1 2144140 2145285 R PFAM: aldo/keto reductase; KEGG: hma:rrnAC1858 aldo/keto reductase; aldo/keto reductase complement(2144140..2145285) Acidithiobacillus ferrooxidans ATCC 53993 6878152 YP_002220573.1 CDS Lferr_2162 NC_011206.1 2145282 2146496 R PFAM: histone deacetylase superfamily; KEGG: sil:SPO2177 acetoin utilization protein AcuC; histone deacetylase superfamily protein complement(2145282..2146496) Acidithiobacillus ferrooxidans ATCC 53993 6878153 YP_002220574.1 CDS Lferr_2163 NC_011206.1 2146493 2148988 R PFAM: von Willebrand factor type A; KEGG: rsq:Rsph17025_4066 hypothetical protein; hypothetical protein complement(2146493..2148988) Acidithiobacillus ferrooxidans ATCC 53993 6878154 YP_002220575.1 CDS Lferr_2164 NC_011206.1 2148998 2149813 R PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: neu:NE1919 nitric oxide reductase NorQ protein; ATPase complement(2148998..2149813) Acidithiobacillus ferrooxidans ATCC 53993 6878155 YP_002220576.1 CDS Lferr_2165 NC_011206.1 2149825 2150226 R hypothetical protein complement(2149825..2150226) Acidithiobacillus ferrooxidans ATCC 53993 6878156 YP_002220577.1 CDS Lferr_2166 NC_011206.1 2150353 2150676 D hypothetical protein 2150353..2150676 Acidithiobacillus ferrooxidans ATCC 53993 6878157 YP_002220578.1 CDS Lferr_2167 NC_011206.1 2150731 2151111 R hypothetical protein complement(2150731..2151111) Acidithiobacillus ferrooxidans ATCC 53993 6878158 YP_002220579.1 CDS Lferr_2168 NC_011206.1 2151164 2152171 R PFAM: biotin/lipoate A/B protein ligase; KEGG: sso:SSO1060 lipoate protein ligase A, hypothetical (LplA-like1); biotin/lipoate A/B protein ligase complement(2151164..2152171) Acidithiobacillus ferrooxidans ATCC 53993 6878159 YP_002220580.1 CDS Lferr_2169 NC_011206.1 2152176 2152589 R hypothetical protein complement(2152176..2152589) Acidithiobacillus ferrooxidans ATCC 53993 6878160 YP_002220581.1 CDS Lferr_2170 NC_011206.1 2152716 2154059 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: aeh:Mlg_2498 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(2152716..2154059) Acidithiobacillus ferrooxidans ATCC 53993 6878161 YP_002220582.1 CDS Lferr_2171 NC_011206.1 2154272 2155408 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aae:aq_1958 hypothetical protein; radical SAM protein complement(2154272..2155408) Acidithiobacillus ferrooxidans ATCC 53993 6878162 YP_002220583.1 CDS Lferr_2172 NC_011206.1 2155433 2156494 R TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; Lycopene beta and epsilon cyclase; KEGG: aae:aq_121 hypothetical protein; geranylgeranyl reductase complement(2155433..2156494) Acidithiobacillus ferrooxidans ATCC 53993 6878163 YP_002220584.1 CDS Lferr_2173 NC_011206.1 2156491 2157561 R PFAM: biotin/lipoate A/B protein ligase; KEGG: aae:aq_1638 lipoate-protein ligase A; biotin/lipoate A/B protein ligase complement(2156491..2157561) Acidithiobacillus ferrooxidans ATCC 53993 6878164 YP_002220585.1 CDS Lferr_2174 NC_011206.1 2157610 2158731 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aae:aq_403 hypothetical protein; radical SAM protein complement(2157610..2158731) Acidithiobacillus ferrooxidans ATCC 53993 6878165 YP_002220586.1 CDS Lferr_2175 NC_011206.1 2158816 2159253 R PFAM: glycine cleavage H-protein; KEGG: aae:aq_402 glycine cleavage system protein H; glycine cleavage H-protein complement(2158816..2159253) Acidithiobacillus ferrooxidans ATCC 53993 6878166 YP_002220587.1 CDS Lferr_2176 NC_011206.1 2159309 2159707 R KEGG: psa:PST_0157 hypothetical protein; hypothetical protein complement(2159309..2159707) Acidithiobacillus ferrooxidans ATCC 53993 6878167 YP_002220588.1 CDS Lferr_2177 NC_011206.1 2159704 2160150 R PFAM: glycine cleavage H-protein; KEGG: aae:aq_944 glycine cleavage system protein H; glycine cleavage H-protein complement(2159704..2160150) Acidithiobacillus ferrooxidans ATCC 53993 6878168 YP_002220589.1 CDS Lferr_2178 NC_011206.1 2160219 2161130 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: aae:aq_400 heterodisulfide reductase subunit B; CoB--CoM heterodisulfide reductase complement(2160219..2161130) Acidithiobacillus ferrooxidans ATCC 53993 6878169 YP_002220590.1 CDS Lferr_2180 NC_011206.1 2161615 2162934 D KEGG: sma:SAV256 transposase; hypothetical protein 2161615..2162934 Acidithiobacillus ferrooxidans ATCC 53993 6878171 YP_002220591.1 CDS Lferr_2181 NC_011206.1 2163056 2163370 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 2163056..2163370 Acidithiobacillus ferrooxidans ATCC 53993 6878172 YP_002220592.1 CDS Lferr_2182 NC_011206.1 2163921 2164739 R KEGG: aae:aq_397 hypothetical protein; hypothetical protein complement(2163921..2164739) Acidithiobacillus ferrooxidans ATCC 53993 6878173 YP_002220593.1 CDS Lferr_2183 NC_011206.1 2164729 2165784 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_395 heterodisulfide reductase subunit A; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2164729..2165784) Acidithiobacillus ferrooxidans ATCC 53993 6878174 YP_002220594.1 CDS Lferr_2184 NC_011206.1 2165797 2167140 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sto:ST1874 hypothetical protein; hypothetical protein complement(2165797..2167140) Acidithiobacillus ferrooxidans ATCC 53993 6878175 YP_002220595.1 CDS Lferr_2185 NC_011206.1 2167151 2167837 R KEGG: aae:aq_391 hypothetical protein; hypothetical protein complement(2167151..2167837) Acidithiobacillus ferrooxidans ATCC 53993 6878176 YP_002220596.1 CDS Lferr_2186 NC_011206.1 2167901 2168371 R KEGG: mgm:Mmc1_3745 hypothetical protein; hypothetical protein complement(2167901..2168371) Acidithiobacillus ferrooxidans ATCC 53993 6878177 YP_002220597.1 CDS Lferr_2187 NC_011206.1 2168415 2168645 R PFAM: SirA family protein; KEGG: tbd:Tbd_0574 hypothetical protein; SirA family protein complement(2168415..2168645) Acidithiobacillus ferrooxidans ATCC 53993 6878178 YP_002220598.1 CDS Lferr_2188 NC_011206.1 2168769 2169098 R PFAM: Rhodanese domain protein; KEGG: tbd:Tbd_0573 rhodanese-like protein; rhodanese domain-containing protein complement(2168769..2169098) Acidithiobacillus ferrooxidans ATCC 53993 6878179 YP_002220599.1 CDS Lferr_2189 NC_011206.1 2169159 2170187 R KEGG: pmy:Pmen_2766 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(2169159..2170187) Acidithiobacillus ferrooxidans ATCC 53993 6878180 YP_002220600.1 CDS Lferr_2190 NC_011206.1 2170458 2170763 D hypothetical protein 2170458..2170763 Acidithiobacillus ferrooxidans ATCC 53993 6878181 YP_002220601.1 CDS Lferr_2191 NC_011206.1 2170767 2171276 R TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dar:Daro_3090 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C complement(2170767..2171276) Acidithiobacillus ferrooxidans ATCC 53993 6878182 YP_002220602.1 CDS Lferr_2192 NC_011206.1 2171534 2172577 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2171534..2172577 Acidithiobacillus ferrooxidans ATCC 53993 6878183 YP_002220603.1 CDS Lferr_2193 NC_011206.1 2172601 2173440 D TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: swd:Swoo_4401 rod shape-determining protein MreC; rod shape-determining protein MreC 2172601..2173440 Acidithiobacillus ferrooxidans ATCC 53993 6878184 YP_002220604.1 CDS Lferr_2194 NC_011206.1 2173437 2173913 D TIGRFAM: rod shape-determining protein MreD; KEGG: sde:Sde_3190 rod shape-determining protein MreD; rod shape-determining protein MreD 2173437..2173913 Acidithiobacillus ferrooxidans ATCC 53993 6878185 YP_002220605.1 CDS Lferr_2195 NC_011206.1 2173910 2175718 D KEGG: mca:MCA0103 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 2173910..2175718 Acidithiobacillus ferrooxidans ATCC 53993 6878186 YP_002220606.1 CDS Lferr_2196 NC_011206.1 2175715 2176809 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: aeh:Mlg_0173 rod shape-determining protein RodA; rod shape-determining protein RodA 2175715..2176809 Acidithiobacillus ferrooxidans ATCC 53993 6878187 YP_002220607.1 CDS Lferr_2197 NC_011206.1 2176952 2178118 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: acr:Acry_0248 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 2176952..2178118 Acidithiobacillus ferrooxidans ATCC 53993 6878188 YP_002220608.1 CDS Lferr_2198 NC_011206.1 2178411 2178677 D PFAM: protein of unknown function DUF493; KEGG: sbn:Sbal195_3458 protein of unknown function DUF493; hypothetical protein 2178411..2178677 Acidithiobacillus ferrooxidans ATCC 53993 6878189 YP_002220609.1 CDS Lferr_2199 NC_011206.1 2178674 2179312 D TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: hch:HCH_05837 lipoate-protein ligase B; lipoate-protein ligase B 2178674..2179312 Acidithiobacillus ferrooxidans ATCC 53993 6878190 YP_002220610.1 CDS Lferr_2200 NC_011206.1 2179315 2180268 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2179315..2180268 Acidithiobacillus ferrooxidans ATCC 53993 6878191 YP_002220611.1 CDS Lferr_2201 NC_011206.1 2180289 2181083 D PFAM: protein of unknown function DUF218; KEGG: mms:mma_3577 hypothetical protein; hypothetical protein 2180289..2181083 Acidithiobacillus ferrooxidans ATCC 53993 6878192 YP_002220612.1 CDS Lferr_2202 NC_011206.1 2181114 2182199 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pap:PSPA7_2300 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(2181114..2182199) Acidithiobacillus ferrooxidans ATCC 53993 6878193 YP_002220613.1 CDS Lferr_2203 NC_011206.1 2182313 2182744 D hypothetical protein 2182313..2182744 Acidithiobacillus ferrooxidans ATCC 53993 6878194 YP_002220614.1 CDS Lferr_2204 NC_011206.1 2182827 2184299 D KEGG: nmc:NMC1673 hypothetical protein; hypothetical protein 2182827..2184299 Acidithiobacillus ferrooxidans ATCC 53993 6878195 YP_002220615.1 CDS Lferr_2205 NC_011206.1 2184309 2185478 D KEGG: nmc:NMC1672 hypothetical protein; response regulator receiver protein 2184309..2185478 Acidithiobacillus ferrooxidans ATCC 53993 6878196 YP_002220616.1 CDS Lferr_2206 NC_011206.1 2185538 2186104 D TIGRFAM: small GTP-binding protein; PFAM: protein of unknown function ATP binding; KEGG: nmn:NMCC_1665 hypothetical protein; small GTP-binding protein 2185538..2186104 Acidithiobacillus ferrooxidans ATCC 53993 6878197 YP_002220617.1 CDS Lferr_2207 NC_011206.1 2186101 2186739 D KEGG: noc:Noc_0134 hypothetical protein; hypothetical protein 2186101..2186739 Acidithiobacillus ferrooxidans ATCC 53993 6878198 YP_002220618.1 CDS Lferr_2208 NC_011206.1 2186785 2187147 D PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 roadblock/LC7; Roadblock/LC7 family protein 2186785..2187147 Acidithiobacillus ferrooxidans ATCC 53993 6878199 YP_002220619.1 CDS glyQ NC_011206.1 2187237 2188121 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 2187237..2188121 Acidithiobacillus ferrooxidans ATCC 53993 6878200 YP_002220620.1 CDS Lferr_2210 NC_011206.1 2188108 2190192 D KEGG: noc:Noc_0373 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 2188108..2190192 Acidithiobacillus ferrooxidans ATCC 53993 6878201 YP_002220621.1 CDS Lferr_2211 NC_011206.1 2190192 2190731 D TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dar:Daro_3536 D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein 2190192..2190731 Acidithiobacillus ferrooxidans ATCC 53993 6878202 YP_002220622.1 CDS Lferr_2212 NC_011206.1 2190728 2191456 D PFAM: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_0375 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2190728..2191456 Acidithiobacillus ferrooxidans ATCC 53993 6878203 YP_002220623.1 CDS Lferr_2213 NC_011206.1 2191404 2192312 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO_2270 ribosomal protein S6 modification protein; RimK family alpha-L-glutamate ligase complement(2191404..2192312) Acidithiobacillus ferrooxidans ATCC 53993 6878204 YP_002220624.1 CDS Lferr_2214 NC_011206.1 2192315 2192635 R hypothetical protein complement(2192315..2192635) Acidithiobacillus ferrooxidans ATCC 53993 6878205 YP_002220625.1 CDS Lferr_2215 NC_011206.1 2192813 2194165 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sto:ST1874 hypothetical protein; hypothetical protein 2192813..2194165 Acidithiobacillus ferrooxidans ATCC 53993 6878206 YP_002220626.1 CDS Lferr_2216 NC_011206.1 2194349 2194645 D hypothetical protein 2194349..2194645 Acidithiobacillus ferrooxidans ATCC 53993 6878207 YP_002220627.1 CDS Lferr_2217 NC_011206.1 2194883 2195584 D PFAM: protein of unknown function DUF208; KEGG: bbr:BB3234 hypothetical protein; hypothetical protein 2194883..2195584 Acidithiobacillus ferrooxidans ATCC 53993 6878208 YP_002220628.1 CDS Lferr_2218 NC_011206.1 2195518 2196108 R KEGG: tbd:Tbd_1043 hypothetical protein; hypothetical protein complement(2195518..2196108) Acidithiobacillus ferrooxidans ATCC 53993 6878209 YP_002220629.1 CDS Lferr_2219 NC_011206.1 2196098 2196652 R PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pfo:Pfl_0787 N-acetyl-anhydromuranmyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase complement(2196098..2196652) Acidithiobacillus ferrooxidans ATCC 53993 6878210 YP_002220630.1 CDS Lferr_2220 NC_011206.1 2196649 2196984 R KEGG: tbd:Tbd_0801 hypothetical protein; hypothetical protein complement(2196649..2196984) Acidithiobacillus ferrooxidans ATCC 53993 6878211 YP_002220631.1 CDS Lferr_2221 NC_011206.1 2197245 2197469 R hypothetical protein complement(2197245..2197469) Acidithiobacillus ferrooxidans ATCC 53993 6878212 YP_002220632.1 CDS Lferr_2222 NC_011206.1 2197580 2197999 R KEGG: tbd:Tbd_0486 hypothetical protein; hypothetical protein complement(2197580..2197999) Acidithiobacillus ferrooxidans ATCC 53993 6878213 YP_002220633.1 CDS Lferr_2223 NC_011206.1 2198057 2198671 R PFAM: Glutathione S-transferase domain; KEGG: pna:Pnap_2477 glutathione S-transferase, C-terminal domain; glutathione S-transferase domain complement(2198057..2198671) Acidithiobacillus ferrooxidans ATCC 53993 6878214 YP_002220634.1 CDS Lferr_2224 NC_011206.1 2198900 2199274 D PFAM: helix-turn-helix HxlR type; KEGG: ava:Ava_1063 predicted transcriptional regulator; HxlR family transcriptional regulator 2198900..2199274 Acidithiobacillus ferrooxidans ATCC 53993 6878215 YP_002220635.1 CDS Lferr_2225 NC_011206.1 2199359 2200900 R TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: hha:Hhal_0690 2-isopropylmalate synthase; 2-isopropylmalate synthase complement(2199359..2200900) Acidithiobacillus ferrooxidans ATCC 53993 6878216 YP_002220636.1 CDS Lferr_2226 NC_011206.1 2200975 2202294 R PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tbd:Tbd_2227 possible transcriptional regulator, fis family; sigma-54 specific transcriptional regulator complement(2200975..2202294) Acidithiobacillus ferrooxidans ATCC 53993 6878217 YP_002220637.1 CDS Lferr_2227 NC_011206.1 2202693 2203079 D KEGG: mag:amb1815 hypothetical protein; hypothetical protein 2202693..2203079 Acidithiobacillus ferrooxidans ATCC 53993 6878218 YP_002220638.1 CDS Lferr_2228 NC_011206.1 2203123 2203353 D PFAM: SirA family protein; KEGG: mag:amb1816 predicted redox protein, regulator of disulfide bond formation; SirA family protein 2203123..2203353 Acidithiobacillus ferrooxidans ATCC 53993 6878219 YP_002220639.1 CDS Lferr_2229 NC_011206.1 2203396 2204535 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mag:amb1817 uncharacterized NAD(FAD)-dependent dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2203396..2204535 Acidithiobacillus ferrooxidans ATCC 53993 6878220 YP_002220640.1 CDS Lferr_2230 NC_011206.1 2204548 2205174 D KEGG: mag:amb1818 hypothetical protein; hypothetical protein 2204548..2205174 Acidithiobacillus ferrooxidans ATCC 53993 6878221 YP_002220641.1 CDS Lferr_2231 NC_011206.1 2205654 2206265 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A2423 hypothetical protein; type 12 methyltransferase 2205654..2206265 Acidithiobacillus ferrooxidans ATCC 53993 6878222 YP_002220642.1 CDS Lferr_2232 NC_011206.1 2206413 2206568 D hypothetical protein 2206413..2206568 Acidithiobacillus ferrooxidans ATCC 53993 6878223 YP_002220643.1 CDS Lferr_2233 NC_011206.1 2206634 2207557 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gdi:GDI3123 putative thiamine transport ATP-binding protein; ABC transporter-like protein 2206634..2207557 Acidithiobacillus ferrooxidans ATCC 53993 6878224 YP_002220644.1 CDS Lferr_2234 NC_011206.1 2207554 2208990 D KEGG: pmf:P9303_06661 protein secretion component, Tat family protein; hypothetical protein 2207554..2208990 Acidithiobacillus ferrooxidans ATCC 53993 6878225 YP_002220645.1 CDS Lferr_2235 NC_011206.1 2209535 2209642 D hypothetical protein 2209535..2209642 Acidithiobacillus ferrooxidans ATCC 53993 6878226 YP_002220646.1 CDS Lferr_2236 NC_011206.1 2209829 2210281 R PFAM: regulatory protein MerR; KEGG: reh:H16_A1346 transcriptional regulator, MerR-family; merR family transcriptional regulator complement(2209829..2210281) Acidithiobacillus ferrooxidans ATCC 53993 6878228 YP_002220647.1 CDS Lferr_2237 NC_011206.1 2210256 2210555 R TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: bpd:BURPS668_1718 integration host factor alpha subunit; integration host factor subunit alpha complement(2210256..2210555) Acidithiobacillus ferrooxidans ATCC 53993 6878229 YP_002220648.1 CDS Lferr_2238 NC_011206.1 2210565 2212964 R KEGG: mca:MCA0698 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta complement(2210565..2212964) Acidithiobacillus ferrooxidans ATCC 53993 6878230 YP_002220649.1 CDS pheS NC_011206.1 2212974 2213996 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2212974..2213996) Acidithiobacillus ferrooxidans ATCC 53993 6878231 YP_002220650.1 CDS rplT NC_011206.1 2214017 2214376 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2214017..2214376) Acidithiobacillus ferrooxidans ATCC 53993 6878232 YP_002220651.1 CDS rpmI NC_011206.1 2214395 2214592 R PFAM: ribosomal protein L35; KEGG: noc:Noc_1142 50S ribosomal protein L35; 50S ribosomal protein L35 complement(2214395..2214592) Acidithiobacillus ferrooxidans ATCC 53993 6878233 YP_002220652.1 CDS Lferr_2242 NC_011206.1 2214602 2215102 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: bps:BPSL1944 translation initiation factor IF-3; translation initiation factor IF-3 complement(2214602..2215102) Acidithiobacillus ferrooxidans ATCC 53993 6878234 YP_002220653.1 CDS thrS NC_011206.1 2215137 2217071 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(2215137..2217071) Acidithiobacillus ferrooxidans ATCC 53993 6878235 YP_002220654.1 CDS Lferr_2244 NC_011206.1 2217355 2218800 R KEGG: tbd:Tbd_1155 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N complement(2217355..2218800) Acidithiobacillus ferrooxidans ATCC 53993 6878237 YP_002220655.1 CDS Lferr_2245 NC_011206.1 2218813 2220297 R KEGG: mfa:Mfla_2049 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(2218813..2220297) Acidithiobacillus ferrooxidans ATCC 53993 6878238 YP_002220656.1 CDS Lferr_2246 NC_011206.1 2220301 2222283 R KEGG: noc:Noc_2554 NADH-plastoquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L complement(2220301..2222283) Acidithiobacillus ferrooxidans ATCC 53993 6878239 YP_002220657.1 CDS Lferr_2247 NC_011206.1 2222285 2222605 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: rso:RSc2052 NADH dehydrogenase subunit K; NADH-ubiquinone oxidoreductase subunit 4L complement(2222285..2222605) Acidithiobacillus ferrooxidans ATCC 53993 6878240 YP_002220658.1 CDS Lferr_2248 NC_011206.1 2222602 2223198 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: nmu:Nmul_A1100 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 complement(2222602..2223198) Acidithiobacillus ferrooxidans ATCC 53993 6878241 YP_002220659.1 CDS Lferr_2249 NC_011206.1 2223214 2223705 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2223214..2223705) Acidithiobacillus ferrooxidans ATCC 53993 6878242 YP_002220660.1 CDS Lferr_2250 NC_011206.1 2223716 2224741 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: tbd:Tbd_1149 NADH dehydrogenase I chain H; NADH dehydrogenase (quinone) complement(2223716..2224741) Acidithiobacillus ferrooxidans ATCC 53993 6878243 YP_002220661.1 CDS Lferr_2251 NC_011206.1 2224753 2227101 R TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: hha:Hhal_1759 NADH-quinone oxidoreductase, chain G; NADH-quinone oxidoreductase subunit G complement(2224753..2227101) Acidithiobacillus ferrooxidans ATCC 53993 6878244 YP_002220662.1 CDS Lferr_2252 NC_011206.1 2227101 2228384 R KEGG: nmu:Nmul_A1096 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F complement(2227101..2228384) Acidithiobacillus ferrooxidans ATCC 53993 6878245 YP_002220663.1 CDS Lferr_2253 NC_011206.1 2228374 2228865 R TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: eba:ebA4838 NADH dehydrogenase subunit E; NADH-quinone oxidoreductase subunit E complement(2228374..2228865) Acidithiobacillus ferrooxidans ATCC 53993 6878246 YP_002220664.1 CDS Lferr_2254 NC_011206.1 2228869 2230122 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(2228869..2230122) Acidithiobacillus ferrooxidans ATCC 53993 6878247 YP_002220665.1 CDS Lferr_2255 NC_011206.1 2230106 2230714 R KEGG: azo:azo1398 NADH dehydrogenase subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C complement(2230106..2230714) Acidithiobacillus ferrooxidans ATCC 53993 6878248 YP_002220666.1 CDS Lferr_2256 NC_011206.1 2230718 2231194 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2230718..2231194) Acidithiobacillus ferrooxidans ATCC 53993 6878249 YP_002220667.1 CDS Lferr_2257 NC_011206.1 2231185 2231541 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: tbd:Tbd_1142 NADH dehydrogenase I chain A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 complement(2231185..2231541) Acidithiobacillus ferrooxidans ATCC 53993 6878250 YP_002220668.1 CDS Lferr_2258 NC_011206.1 2231797 2232198 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: bam:Bamb_2288 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(2231797..2232198) Acidithiobacillus ferrooxidans ATCC 53993 6878252 YP_002220669.1 CDS Lferr_2259 NC_011206.1 2232203 2232943 R PFAM: triosephosphate isomerase; KEGG: noc:Noc_2566 triosephosphate isomerase; Triose-phosphate isomerase complement(2232203..2232943) Acidithiobacillus ferrooxidans ATCC 53993 6878253 YP_002220670.1 CDS Lferr_2260 NC_011206.1 2233083 2234447 R KEGG: bmu:Bmul_2021 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucosamine mutase complement(2233083..2234447) Acidithiobacillus ferrooxidans ATCC 53993 6878254 YP_002220671.1 CDS Lferr_2261 NC_011206.1 2234486 2235262 R KEGG: hha:Hhal_1769 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(2234486..2235262) Acidithiobacillus ferrooxidans ATCC 53993 6878255 YP_002220672.1 CDS Lferr_2262 NC_011206.1 2235316 2237241 R KEGG: nmu:Nmul_A0483 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(2235316..2237241) Acidithiobacillus ferrooxidans ATCC 53993 6878256 YP_002220673.1 CDS Lferr_2263 NC_011206.1 2237339 2238784 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: tbd:Tbd_0512 putative modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(2237339..2238784) Acidithiobacillus ferrooxidans ATCC 53993 6878257 YP_002220674.1 CDS Lferr_2264 NC_011206.1 2239109 2241955 D KEGG: nha:Nham_3663 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase subunit alpha 2239109..2241955 Acidithiobacillus ferrooxidans ATCC 53993 6878258 YP_002220675.1 CDS Lferr_2265 NC_011206.1 2241986 2243110 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 2241986..2243110 Acidithiobacillus ferrooxidans ATCC 53993 6878259 YP_002220676.1 CDS Lferr_2267 NC_011206.1 2243868 2244224 D PFAM: regulatory protein ArsR; KEGG: chy:CHY_1098 transcriptional regulator, ArsR family; arsR family transcriptional regulator 2243868..2244224 Acidithiobacillus ferrooxidans ATCC 53993 6878261 YP_002220677.1 CDS Lferr_2268 NC_011206.1 2244221 2245498 D PFAM: major facilitator superfamily MFS_1; KEGG: acr:Acry_3238 major facilitator superfamily MFS_1; major facilitator superfamily protein 2244221..2245498 Acidithiobacillus ferrooxidans ATCC 53993 6878262 YP_002220678.1 CDS Lferr_2269 NC_011206.1 2245495 2245836 D PFAM: DsrE family protein; KEGG: mgm:Mmc1_1103 DsrE family protein; DsrE family protein 2245495..2245836 Acidithiobacillus ferrooxidans ATCC 53993 6878263 YP_002220679.1 CDS Lferr_2270 NC_011206.1 2245890 2246642 D PFAM: beta-lactamase domain protein; KEGG: xau:Xaut_2897 beta-lactamase domain protein; beta-lactamase domain-containing protein 2245890..2246642 Acidithiobacillus ferrooxidans ATCC 53993 6878264 YP_002220680.1 CDS Lferr_2271 NC_011206.1 2247022 2247423 R hypothetical protein complement(2247022..2247423) Acidithiobacillus ferrooxidans ATCC 53993 6878265 YP_002220681.1 CDS Lferr_2272 NC_011206.1 2247658 2247759 R hypothetical protein complement(2247658..2247759) Acidithiobacillus ferrooxidans ATCC 53993 6878266 YP_002220682.1 CDS Lferr_2273 NC_011206.1 2248383 2248568 R hypothetical protein complement(2248383..2248568) Acidithiobacillus ferrooxidans ATCC 53993 6878267 YP_002220683.1 CDS Lferr_2274 NC_011206.1 2248602 2249123 R hypothetical protein complement(2248602..2249123) Acidithiobacillus ferrooxidans ATCC 53993 6878268 YP_002220684.1 CDS Lferr_2275 NC_011206.1 2249339 2249773 D KEGG: pna:Pnap_1362 hypothetical protein; hypothetical protein 2249339..2249773 Acidithiobacillus ferrooxidans ATCC 53993 6878269 YP_002220685.1 CDS Lferr_2276 NC_011206.1 2250205 2250579 D PFAM: copper resistance protein CopC; KEGG: bur:Bcep18194_B2706 copper resistance protein CopC; copper resistance protein CopC 2250205..2250579 Acidithiobacillus ferrooxidans ATCC 53993 6878270 YP_002220686.1 CDS Lferr_2278 NC_011206.1 2252301 2252588 R hypothetical protein complement(2252301..2252588) Acidithiobacillus ferrooxidans ATCC 53993 6878272 YP_002220687.1 CDS Lferr_2279 NC_011206.1 2252705 2252875 R hypothetical protein complement(2252705..2252875) Acidithiobacillus ferrooxidans ATCC 53993 6878273 YP_002220688.1 CDS Lferr_2280 NC_011206.1 2252997 2254133 D PFAM: UMUC domain protein DNA-repair protein; KEGG: aeh:Mlg_2775 DNA-directed DNA polymerase; DNA-directed DNA polymerase 2252997..2254133 Acidithiobacillus ferrooxidans ATCC 53993 6878274 YP_002220689.1 CDS Lferr_2281 NC_011206.1 2254179 2254520 D PFAM: PilT protein domain protein; KEGG: neu:NE0498 PIN (PilT N terminus) domain; PilT protein domain-containing protein 2254179..2254520 Acidithiobacillus ferrooxidans ATCC 53993 6878275 YP_002220690.1 CDS Lferr_2282 NC_011206.1 2254590 2255327 R PFAM: protein of unknown function DUF72; KEGG: sus:Acid_2024 protein of unknown function DUF72; hypothetical protein complement(2254590..2255327) Acidithiobacillus ferrooxidans ATCC 53993 6878276 YP_002220691.1 CDS Lferr_2283 NC_011206.1 2255703 2255906 D KEGG: syf:Synpcc7942_B2638 hypothetical protein; hypothetical protein 2255703..2255906 Acidithiobacillus ferrooxidans ATCC 53993 6878277 YP_002220692.1 CDS Lferr_2284 NC_011206.1 2255875 2256177 D KEGG: bpd:BURPS668_3899 hypothetical protein; hypothetical protein 2255875..2256177 Acidithiobacillus ferrooxidans ATCC 53993 6878278 YP_002220693.1 CDS Lferr_2285 NC_011206.1 2256230 2257645 D PFAM: amino acid permease-associated region; KEGG: bur:Bcep18194_C7711 amino acid permease-associated region; amino acid permease-associated protein 2256230..2257645 Acidithiobacillus ferrooxidans ATCC 53993 6878279 YP_002220694.1 CDS Lferr_2286 NC_011206.1 2257757 2258323 R TIGRFAM: deoxycytidine triphosphate deaminase; KEGG: reu:Reut_A0688 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase complement(2257757..2258323) Acidithiobacillus ferrooxidans ATCC 53993 6878280 YP_002220695.1 CDS Lferr_2287 NC_011206.1 2258353 2259429 R KEGG: tbd:Tbd_2108 ATP-binding protein involved in chromosome partitioning; chromosome partitioning ATPase complement(2258353..2259429) Acidithiobacillus ferrooxidans ATCC 53993 6878281 YP_002220696.1 CDS Lferr_2288 NC_011206.1 2259444 2259758 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: csa:Csal_2488 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(2259444..2259758) Acidithiobacillus ferrooxidans ATCC 53993 6878282 YP_002220697.1 CDS Lferr_2289 NC_011206.1 2259788 2260618 R PFAM: dihydrodipicolinate reductase; homoserine dehydrogenase NAD-binding; KEGG: tbd:Tbd_1125 dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(2259788..2260618) Acidithiobacillus ferrooxidans ATCC 53993 6878283 YP_002220698.1 CDS Lferr_2290 NC_011206.1 2260618 2261745 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(2260618..2261745) Acidithiobacillus ferrooxidans ATCC 53993 6878284 YP_002220699.1 CDS Lferr_2291 NC_011206.1 2261812 2263716 R KEGG: aeh:Mlg_1900 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK complement(2261812..2263716) Acidithiobacillus ferrooxidans ATCC 53993 6878285 YP_002220700.1 CDS Lferr_2292 NC_011206.1 2263762 2264277 R PFAM: GrpE protein; KEGG: ppu:PP_4728 heat shock protein GrpE; GrpE protein HSP-70 cofactor complement(2263762..2264277) Acidithiobacillus ferrooxidans ATCC 53993 6878286 YP_002220701.1 CDS Lferr_2293 NC_011206.1 2264350 2265372 R TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: hha:Hhal_1478 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA complement(2264350..2265372) Acidithiobacillus ferrooxidans ATCC 53993 6878287 YP_002220702.1 CDS rpmG NC_011206.1 2265607 2265762 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(2265607..2265762) Acidithiobacillus ferrooxidans ATCC 53993 6878288 YP_002220703.1 CDS rpmB NC_011206.1 2265773 2266009 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(2265773..2266009) Acidithiobacillus ferrooxidans ATCC 53993 6878289 YP_002220704.1 CDS Lferr_2296 NC_011206.1 2266120 2268156 D TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: mfa:Mfla_1065 methionyl-tRNA synthetase; methionyl-tRNA synthetase 2266120..2268156 Acidithiobacillus ferrooxidans ATCC 53993 6878290 YP_002220705.1 CDS Lferr_2297 NC_011206.1 2268149 2269267 R PFAM: DAHP synthetase I/KDSA; KEGG: nmu:Nmul_A0091 3-deoxy-7-phosphoheptulonate synthase; 3-deoxy-7-phosphoheptulonate synthase complement(2268149..2269267) Acidithiobacillus ferrooxidans ATCC 53993 6878291 YP_002220706.1 CDS Lferr_2298 NC_011206.1 2269346 2270719 R TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: tel:tll1534 fumarate hydratase; class II fumarate hydratase complement(2269346..2270719) Acidithiobacillus ferrooxidans ATCC 53993 6878292 YP_002220707.1 CDS Lferr_2299 NC_011206.1 2270721 2272517 R PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: sru:SRU_1312 oligoendopeptidase F; peptidase M3A and M3B thimet/oligopeptidase F complement(2270721..2272517) Acidithiobacillus ferrooxidans ATCC 53993 6878293 YP_002220708.1 CDS Lferr_2300 NC_011206.1 2272561 2273007 R PFAM: Domain of unknown function DUF1841; KEGG: net:Neut_1650 hypothetical protein; hypothetical protein complement(2272561..2273007) Acidithiobacillus ferrooxidans ATCC 53993 6878294 YP_002220709.1 CDS Lferr_2301 NC_011206.1 2273171 2274874 D KEGG: bcl:ABC3831 phage infection protein; hypothetical protein 2273171..2274874 Acidithiobacillus ferrooxidans ATCC 53993 6878295 YP_002220710.1 CDS Lferr_2302 NC_011206.1 2274940 2275509 R KEGG: har:HEAR2720 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); 3-deoxy-D-manno-octulosonic-acid transferase complement(2274940..2275509) Acidithiobacillus ferrooxidans ATCC 53993 6878296 YP_002220711.1 CDS Lferr_2303 NC_011206.1 2275667 2277136 D KEGG: mca:MCA1476 glycogen synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; glycogen/starch synthase 2275667..2277136 Acidithiobacillus ferrooxidans ATCC 53993 6878297 YP_002220712.1 CDS Lferr_2304 NC_011206.1 2277177 2278565 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mta:Moth_1187 RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein 2277177..2278565 Acidithiobacillus ferrooxidans ATCC 53993 6878298 YP_002220713.1 CDS Lferr_2305 NC_011206.1 2278649 2279065 D hypothetical protein 2278649..2279065 Acidithiobacillus ferrooxidans ATCC 53993 6878299 YP_002220714.1 CDS Lferr_2306 NC_011206.1 2279163 2279825 D KEGG: mca:MCA2899 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III 2279163..2279825 Acidithiobacillus ferrooxidans ATCC 53993 6878300 YP_002220715.1 CDS Lferr_2307 NC_011206.1 2279805 2281766 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_B0911 TPR domain protein; hypothetical protein complement(2279805..2281766) Acidithiobacillus ferrooxidans ATCC 53993 6878301 YP_002220716.1 CDS Lferr_2308 NC_011206.1 2282264 2284498 D PFAM: Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: ecx:EcHS_A3814 putative haemagglutinin; hemagluttinin domain-containing protein 2282264..2284498 Acidithiobacillus ferrooxidans ATCC 53993 6878302 YP_002220717.1 CDS Lferr_2309 NC_011206.1 2284606 2285160 D PFAM: OmpA/MotB domain protein; KEGG: pap:PSPA7_4338 probable outer membrane protein; ompA/MotB domain-containing protein 2284606..2285160 Acidithiobacillus ferrooxidans ATCC 53993 6878303 YP_002220718.1 CDS Lferr_2310 NC_011206.1 2285225 2286190 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: zmo:ZMO0137 hypothetical protein; Sel1 domain-containing protein repeat-containing protein complement(2285225..2286190) Acidithiobacillus ferrooxidans ATCC 53993 6878304 YP_002220719.1 CDS Lferr_2311 NC_011206.1 2286540 2287127 D KEGG: bcm:Bcenmc03_1492 collagen triple helix repeat; hypothetical protein 2286540..2287127 Acidithiobacillus ferrooxidans ATCC 53993 6878305 YP_002220720.1 CDS Lferr_2312 NC_011206.1 2287227 2287694 D KEGG: bmu:Bmul_2536 hypothetical protein; hypothetical protein 2287227..2287694 Acidithiobacillus ferrooxidans ATCC 53993 6878306 YP_002220721.1 CDS Lferr_2313 NC_011206.1 2287698 2288492 R KEGG: aeh:Mlg_0350 TonB family protein; hypothetical protein complement(2287698..2288492) Acidithiobacillus ferrooxidans ATCC 53993 6878307 YP_002220722.1 CDS Lferr_2314 NC_011206.1 2288485 2290446 R PFAM: outer membrane efflux protein; KEGG: rso:RSc0166 probable outer membrane channel lipoprotein; outer membrane efflux protein complement(2288485..2290446) Acidithiobacillus ferrooxidans ATCC 53993 6878308 YP_002220723.1 CDS Lferr_2315 NC_011206.1 2290443 2291840 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: plu:plu0635 hypothetical protein; HlyD family type I secretion membrane fusion protein complement(2290443..2291840) Acidithiobacillus ferrooxidans ATCC 53993 6878309 YP_002220724.1 CDS Lferr_2316 NC_011206.1 2291842 2294016 R KEGG: hch:HCH_06117 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; type I secretion system ATPase complement(2291842..2294016) Acidithiobacillus ferrooxidans ATCC 53993 6878310 YP_002220725.1 CDS Lferr_2317 NC_011206.1 2294013 2294789 R KEGG: bpt:Bpet3370 putative lipoprotein; lipoprotein complement(2294013..2294789) Acidithiobacillus ferrooxidans ATCC 53993 6878311 YP_002220726.1 CDS Lferr_2318 NC_011206.1 2294896 2296284 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bmn:BMA10247_1040 sigma-54 interaction domain/fis family transcriptional regulator domain protein; sigma-54 specific transcriptional regulator complement(2294896..2296284) Acidithiobacillus ferrooxidans ATCC 53993 6878312 YP_002220727.1 CDS Lferr_2319 NC_011206.1 2296284 2298074 R KEGG: bur:Bcep18194_A4668 membrane protein; hypothetical protein complement(2296284..2298074) Acidithiobacillus ferrooxidans ATCC 53993 6878313 YP_002220728.1 CDS Lferr_2320 NC_011206.1 2298040 2298651 R KEGG: bbr:BB1832 hypothetical protein; hypothetical protein complement(2298040..2298651) Acidithiobacillus ferrooxidans ATCC 53993 6878314 YP_002220729.1 CDS Lferr_2321 NC_011206.1 2298648 2299487 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bam:Bamb_1408 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(2298648..2299487) Acidithiobacillus ferrooxidans ATCC 53993 6878315 YP_002220730.1 CDS Lferr_2322 NC_011206.1 2299490 2300428 R PFAM: type II secretion system protein; KEGG: rso:RS02590 putative tight adherence TadC related transmembrane protein; type II secretion system protein complement(2299490..2300428) Acidithiobacillus ferrooxidans ATCC 53993 6878316 YP_002220731.1 CDS Lferr_2323 NC_011206.1 2300436 2301377 R PFAM: type II secretion system protein; KEGG: reh:H16_B0188 flp pilus assembly protein TadB; type II secretion system protein complement(2300436..2301377) Acidithiobacillus ferrooxidans ATCC 53993 6878317 YP_002220732.1 CDS Lferr_2324 NC_011206.1 2301374 2302708 R PFAM: type II secretion system protein E; KEGG: bxe:Bxe_A2796 putative type II/IV secretion ATPase protein, TadA; type II secretion system protein E complement(2301374..2302708) Acidithiobacillus ferrooxidans ATCC 53993 6878318 YP_002220733.1 CDS Lferr_2325 NC_011206.1 2302705 2303934 R KEGG: rme:Rmet_3655 response regulator receiver domain protein (CheY-like); response regulator receiver domain-containing protein (CheY-like) complement(2302705..2303934) Acidithiobacillus ferrooxidans ATCC 53993 6878319 YP_002220734.1 CDS Lferr_2326 NC_011206.1 2303931 2305367 R PFAM: type II and III secretion system protein; KEGG: bxe:Bxe_A2798 putative outer membrane channel signal peptide protein, CpaC like; type II and III secretion system protein complement(2303931..2305367) Acidithiobacillus ferrooxidans ATCC 53993 6878320 YP_002220735.1 CDS Lferr_2327 NC_011206.1 2305381 2306352 R TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: reu:Reut_B5408 Flp pilus assembly CpaB; Flp pilus assembly protein CpaB complement(2305381..2306352) Acidithiobacillus ferrooxidans ATCC 53993 6878321 YP_002220736.1 CDS Lferr_2328 NC_011206.1 2306461 2306958 R PFAM: TadE family protein; KEGG: bpd:BURPS668_1766 TadE family protein; TadE family protein complement(2306461..2306958) Acidithiobacillus ferrooxidans ATCC 53993 6878322 YP_002220737.1 CDS Lferr_2329 NC_011206.1 2306955 2307413 R PFAM: peptidase A24A prepilin type IV; KEGG: mfa:Mfla_1645 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV complement(2306955..2307413) Acidithiobacillus ferrooxidans ATCC 53993 6878323 YP_002220738.1 CDS Lferr_2330 NC_011206.1 2307785 2308099 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(2307785..2308099) Acidithiobacillus ferrooxidans ATCC 53993 6878324 YP_002220739.1 CDS Lferr_2331 NC_011206.1 2308221 2309540 R KEGG: sma:SAV256 transposase; hypothetical protein complement(2308221..2309540) Acidithiobacillus ferrooxidans ATCC 53993 6878325 YP_002220740.1 CDS Lferr_2332 NC_011206.1 2309603 2309812 R PFAM: Flp/Fap pilin component; KEGG: rme:Rmet_0653 Flp/Fap pilin component; Flp/Fap pilin component complement(2309603..2309812) Acidithiobacillus ferrooxidans ATCC 53993 6878326 YP_002220741.1 CDS Lferr_2333 NC_011206.1 2310697 2311206 D KEGG: bch:Bcen2424_6766 PE-PGRS family protein; PE-PGRS family protein 2310697..2311206 Acidithiobacillus ferrooxidans ATCC 53993 6878327 YP_002220742.1 CDS Lferr_2334 NC_011206.1 2311322 2311774 D KEGG: bch:Bcen2424_6766 PE-PGRS family protein; PE-PGRS family protein 2311322..2311774 Acidithiobacillus ferrooxidans ATCC 53993 6878328 YP_002220743.1 CDS Lferr_2335 NC_011206.1 2311881 2312201 R KEGG: ppf:Pput_4104 hypothetical protein; hypothetical protein complement(2311881..2312201) Acidithiobacillus ferrooxidans ATCC 53993 6878329 YP_002220744.1 CDS Lferr_2336 NC_011206.1 2312222 2312431 R hypothetical protein complement(2312222..2312431) Acidithiobacillus ferrooxidans ATCC 53993 6878330 YP_002220745.1 CDS Lferr_2337 NC_011206.1 2312852 2313328 D PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_4705 ribosomal-protein-alanine acetyltransferase; N-acetyltransferase GCN5 2312852..2313328 Acidithiobacillus ferrooxidans ATCC 53993 6878331 YP_002220746.1 CDS Lferr_2338 NC_011206.1 2313356 2315644 R PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bbt:BBta_4342 putative TPR repeat protein; sulfotransferase complement(2313356..2315644) Acidithiobacillus ferrooxidans ATCC 53993 6878332 YP_002220747.1 CDS Lferr_2339 NC_011206.1 2315745 2316146 R KEGG: acr:Acry_0518 hypothetical protein; hypothetical protein complement(2315745..2316146) Acidithiobacillus ferrooxidans ATCC 53993 6878333 YP_002220748.1 CDS Lferr_2340 NC_011206.1 2316327 2318102 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2316327..2318102 Acidithiobacillus ferrooxidans ATCC 53993 6878334 YP_002220749.1 CDS Lferr_2341 NC_011206.1 2318122 2318328 D KEGG: rru:Rru_A1275 hypothetical protein; hypothetical protein 2318122..2318328 Acidithiobacillus ferrooxidans ATCC 53993 6878335 YP_002220750.1 CDS Lferr_2342 NC_011206.1 2318336 2319058 D TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rme:Rmet_5137 ribonucleoside-triphosphate reductase, anaerobic-like protein; anaerobic ribonucleoside-triphosphate reductase activating protein 2318336..2319058 Acidithiobacillus ferrooxidans ATCC 53993 6878336 YP_002220751.1 CDS Lferr_2343 NC_011206.1 2319067 2320599 R PFAM: protein of unknown function DUF116; biotin/lipoate A/B protein ligase; KEGG: mta:Moth_0443 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase complement(2319067..2320599) Acidithiobacillus ferrooxidans ATCC 53993 6878337 YP_002220752.1 CDS Lferr_2344 NC_011206.1 2320613 2321491 R PFAM: peptidase U32; KEGG: rfr:Rfer_0135 peptidase U32; peptidase U32 complement(2320613..2321491) Acidithiobacillus ferrooxidans ATCC 53993 6878338 YP_002220753.1 CDS Lferr_2345 NC_011206.1 2321569 2322579 R PFAM: peptidase U32; KEGG: azo:azo0374 conserved hypothetical peptidase; peptidase U32 complement(2321569..2322579) Acidithiobacillus ferrooxidans ATCC 53993 6878339 YP_002220754.1 CDS Lferr_2346 NC_011206.1 2322610 2323170 R KEGG: tbd:Tbd_2183 hypothetical protein; lipid carrier protein-like protein complement(2322610..2323170) Acidithiobacillus ferrooxidans ATCC 53993 6878340 YP_002220755.1 CDS Lferr_2347 NC_011206.1 2323380 2324561 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: mms:mma_1902 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 2323380..2324561 Acidithiobacillus ferrooxidans ATCC 53993 6878341 YP_002220756.1 CDS Lferr_2348 NC_011206.1 2324558 2324905 D hypothetical protein 2324558..2324905 Acidithiobacillus ferrooxidans ATCC 53993 6878342 YP_002220757.1 CDS Lferr_2349 NC_011206.1 2325111 2325770 D PFAM: cytochrome c class I; KEGG: bxe:Bxe_A0346 cytochrome c, class I; cytochrome c class I 2325111..2325770 Acidithiobacillus ferrooxidans ATCC 53993 6878343 YP_002220758.1 CDS Lferr_2350 NC_011206.1 2325776 2326585 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2183 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2325776..2326585 Acidithiobacillus ferrooxidans ATCC 53993 6878344 YP_002220759.1 CDS Lferr_2351 NC_011206.1 2326616 2327236 D KEGG: gdi:GDI3179 putative ubiquinol-cytochrome c reductase iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 2326616..2327236 Acidithiobacillus ferrooxidans ATCC 53993 6878345 YP_002220760.1 CDS Lferr_2352 NC_011206.1 2327264 2328478 D PFAM: Cytochrome b/b6 domain; KEGG: noc:Noc_0298 cytochrome b/b6-like; cytochrome b/b6 domain-containing protein 2327264..2328478 Acidithiobacillus ferrooxidans ATCC 53993 6878346 YP_002220761.1 CDS Lferr_2353 NC_011206.1 2328501 2329202 D PFAM: cytochrome c1; KEGG: xcc:XCC2322 ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit; cytochrome c1 2328501..2329202 Acidithiobacillus ferrooxidans ATCC 53993 6878347 YP_002220762.1 CDS Lferr_2354 NC_011206.1 2329289 2329609 D KEGG: rpd:RPD_3616 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 2329289..2329609 Acidithiobacillus ferrooxidans ATCC 53993 6878348 YP_002220763.1 CDS Lferr_2355 NC_011206.1 2329783 2330235 D hypothetical protein 2329783..2330235 Acidithiobacillus ferrooxidans ATCC 53993 6878349 YP_002220764.1 CDS Lferr_2356 NC_011206.1 2330336 2330944 D KEGG: mag:amb1922 hypothetical protein; hypothetical protein 2330336..2330944 Acidithiobacillus ferrooxidans ATCC 53993 6878350 YP_002220765.1 CDS Lferr_2357 NC_011206.1 2331099 2331758 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pfl:PFL_0835 ribosomal RNA large subunit methyltransferase J; ribosomal RNA methyltransferase RrmJ/FtsJ complement(2331099..2331758) Acidithiobacillus ferrooxidans ATCC 53993 6878352 YP_002220766.1 CDS Lferr_2358 NC_011206.1 2331848 2332132 D PFAM: protein of unknown function UPF0044; KEGG: bcm:Bcenmc03_1266 protein of unknown function UPF0044; hypothetical protein 2331848..2332132 Acidithiobacillus ferrooxidans ATCC 53993 6878353 YP_002220767.1 CDS Lferr_2359 NC_011206.1 2332222 2332605 D PFAM: ApaG domain protein; KEGG: pap:PSPA7_0735 hypothetical protein; ApaG domain-containing protein 2332222..2332605 Acidithiobacillus ferrooxidans ATCC 53993 6878354 YP_002220768.1 CDS Lferr_2360 NC_011206.1 2332602 2333207 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nmu:Nmul_A0349 UbiE/COQ5 methyltransferase; type 11 methyltransferase 2332602..2333207 Acidithiobacillus ferrooxidans ATCC 53993 6878355 YP_002220769.1 CDS Lferr_2361 NC_011206.1 2333275 2335173 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: bpd:BURPS668_1748 GTP-binding protein TypA; GTP-binding protein TypA complement(2333275..2335173) Acidithiobacillus ferrooxidans ATCC 53993 6878356 YP_002220770.1 CDS Lferr_2362 NC_011206.1 2335249 2336463 R PFAM: phosphate-selective porin O and P; KEGG: mca:MCA1375 hypothetical protein; phosphate-selective porin O and P complement(2335249..2336463) Acidithiobacillus ferrooxidans ATCC 53993 6878357 YP_002220771.1 CDS Lferr_2363 NC_011206.1 2336783 2337676 D PFAM: diaminopimelate epimerase; KEGG: aha:AHA_0474 diaminopimelate epimerase; diaminopimelate epimerase 2336783..2337676 Acidithiobacillus ferrooxidans ATCC 53993 6878359 YP_002220772.1 CDS Lferr_2364 NC_011206.1 2337678 2337854 D hypothetical protein 2337678..2337854 Acidithiobacillus ferrooxidans ATCC 53993 6878360 YP_002220773.1 CDS Lferr_2365 NC_011206.1 2337855 2338538 D PFAM: protein of unknown function DUF484; KEGG: pae:PA5279 hypothetical protein; hypothetical protein 2337855..2338538 Acidithiobacillus ferrooxidans ATCC 53993 6878361 YP_002220774.1 CDS Lferr_2366 NC_011206.1 2338532 2339476 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: aeh:Mlg_0063 tyrosine recombinase XerC; integrase family protein 2338532..2339476 Acidithiobacillus ferrooxidans ATCC 53993 6878362 YP_002220775.1 CDS Lferr_2367 NC_011206.1 2339473 2340012 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 2339473..2340012 Acidithiobacillus ferrooxidans ATCC 53993 6878363 YP_002220776.1 CDS Lferr_2368 NC_011206.1 2340015 2341337 D KEGG: hha:Hhal_1204 heat shock protein HslVU, ATPase subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; heat shock protein HslVU, ATPase subunit HslU 2340015..2341337 Acidithiobacillus ferrooxidans ATCC 53993 6878364 YP_002220777.1 CDS Lferr_2369 NC_011206.1 2341360 2341692 R PFAM: Domain of unknown function DUF1791; KEGG: dra:DR_0054 hypothetical protein; hypothetical protein complement(2341360..2341692) Acidithiobacillus ferrooxidans ATCC 53993 6878365 YP_002220778.1 CDS Lferr_2370 NC_011206.1 2341689 2342549 R TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: aha:AHA_0374 alternative sigma factor RpoH; RNA polymerase sigma-32 subunit RpoH complement(2341689..2342549) Acidithiobacillus ferrooxidans ATCC 53993 6878366 YP_002220779.1 CDS Lferr_2371 NC_011206.1 2342693 2343598 R PFAM: protein of unknown function DUF214; KEGG: pfo:Pfl_5335 protein of unknown function DUF214; hypothetical protein complement(2342693..2343598) Acidithiobacillus ferrooxidans ATCC 53993 6878367 YP_002220780.1 CDS Lferr_2372 NC_011206.1 2343595 2344266 R KEGG: mmw:Mmwyl1_4327 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(2343595..2344266) Acidithiobacillus ferrooxidans ATCC 53993 6878368 YP_002220781.1 CDS Lferr_2373 NC_011206.1 2344263 2345294 R KEGG: csa:Csal_2989 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(2344263..2345294) Acidithiobacillus ferrooxidans ATCC 53993 6878369 YP_002220782.1 CDS Lferr_2374 NC_011206.1 2345417 2345986 D TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: sgl:SG0083 predicted methyltransferase; methyltransferase 2345417..2345986 Acidithiobacillus ferrooxidans ATCC 53993 6878370 YP_002220783.1 CDS Lferr_2375 NC_011206.1 2345979 2346503 D KEGG: ppw:PputW619_0342 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 2345979..2346503 Acidithiobacillus ferrooxidans ATCC 53993 6878371 YP_002220784.1 CDS Lferr_2376 NC_011206.1 2346532 2346783 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RSc0391 probable ferredoxin protein; 4Fe-4S ferredoxin 2346532..2346783 Acidithiobacillus ferrooxidans ATCC 53993 6878372 YP_002220785.1 CDS Lferr_2377 NC_011206.1 2346767 2348746 R KEGG: azo:azo0760 hypothetical protein; hypothetical protein complement(2346767..2348746) Acidithiobacillus ferrooxidans ATCC 53993 6878373 YP_002220786.1 CDS Lferr_2378 NC_011206.1 2348763 2349575 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(2348763..2349575) Acidithiobacillus ferrooxidans ATCC 53993 6878374 YP_002220787.1 CDS Lferr_2379 NC_011206.1 2349578 2350444 R TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 12; KEGG: bxe:Bxe_A0435 modification methylase HemK; protein-(glutamine-N5) methyltransferase complement(2349578..2350444) Acidithiobacillus ferrooxidans ATCC 53993 6878375 YP_002220788.1 CDS Lferr_2380 NC_011206.1 2350434 2351531 R TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: mca:MCA1051 peptide chain release factor 1; peptide chain release factor 1 complement(2350434..2351531) Acidithiobacillus ferrooxidans ATCC 53993 6878376 YP_002220789.1 CDS Lferr_2381 NC_011206.1 2351528 2352859 R TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; KEGG: noc:Noc_0510 glutamyl-tRNA reductase; glutamyl-tRNA reductase complement(2351528..2352859) Acidithiobacillus ferrooxidans ATCC 53993 6878377 YP_002220790.1 CDS Lferr_2382 NC_011206.1 2352914 2354575 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nmu:Nmul_A0586 hypothetical protein; hypothetical protein 2352914..2354575 Acidithiobacillus ferrooxidans ATCC 53993 6878378 YP_002220791.1 CDS Lferr_2383 NC_011206.1 2354572 2355228 D PFAM: outer membrane lipoprotein LolB; KEGG: azo:azo0757 conserved hypothetical outer membrane lipoprotein; outer membrane lipoprotein LolB 2354572..2355228 Acidithiobacillus ferrooxidans ATCC 53993 6878379 YP_002220792.1 CDS Lferr_2384 NC_011206.1 2355225 2356070 D KEGG: azo:azo0756 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2355225..2356070 Acidithiobacillus ferrooxidans ATCC 53993 6878380 YP_002220793.1 CDS Lferr_2385 NC_011206.1 2356198 2357145 D KEGG: tbd:Tbd_0387 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 2356198..2357145 Acidithiobacillus ferrooxidans ATCC 53993 6878382 YP_002220794.1 CDS Lferr_2386 NC_011206.1 2357312 2357494 R hypothetical protein complement(2357312..2357494) Acidithiobacillus ferrooxidans ATCC 53993 6878384 YP_002220795.1 CDS Lferr_2388 NC_011206.1 2357979 2358962 R PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: eba:ebA6362 putative endonuclease; restriction endonuclease complement(2357979..2358962) Acidithiobacillus ferrooxidans ATCC 53993 6878386 YP_002220796.1 CDS Lferr_2389 NC_011206.1 2358955 2359146 R hypothetical protein complement(2358955..2359146) Acidithiobacillus ferrooxidans ATCC 53993 6878387 YP_002220797.1 CDS Lferr_2390 NC_011206.1 2359179 2359331 D hypothetical protein 2359179..2359331 Acidithiobacillus ferrooxidans ATCC 53993 6878388 YP_002220798.1 CDS Lferr_2391 NC_011206.1 2359455 2359742 R KEGG: neu:NE0498 PIN (PilT N terminus) domain; PIN (PilT N terminus) domain complement(2359455..2359742) Acidithiobacillus ferrooxidans ATCC 53993 6878389 YP_002220799.1 CDS Lferr_2392 NC_011206.1 2359860 2360099 R KEGG: gvi:gsr4342 virulence-associated protein VapB homolog; virulence-associated protein VapB-like protein complement(2359860..2360099) Acidithiobacillus ferrooxidans ATCC 53993 6878390 YP_002220800.1 CDS Lferr_2393 NC_011206.1 2360280 2360549 R hypothetical protein complement(2360280..2360549) Acidithiobacillus ferrooxidans ATCC 53993 6878391 YP_002220801.1 CDS Lferr_2395 NC_011206.1 2361624 2362943 D KEGG: sma:SAV256 transposase; hypothetical protein 2361624..2362943 Acidithiobacillus ferrooxidans ATCC 53993 6878393 YP_002220802.1 CDS Lferr_2396 NC_011206.1 2363065 2363379 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 2363065..2363379 Acidithiobacillus ferrooxidans ATCC 53993 6878394 YP_002220803.1 CDS Lferr_2398 NC_011206.1 2364353 2365138 R PFAM: protein of unknown function DUF81; KEGG: gox:GOX0571 hypothetical protein; hypothetical protein complement(2364353..2365138) Acidithiobacillus ferrooxidans ATCC 53993 6878396 YP_002220804.1 CDS Lferr_2400 NC_011206.1 2365614 2366441 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B267 transposition helper protein; IstB domain-containing ATP-binding protein complement(2365614..2366441) Acidithiobacillus ferrooxidans ATCC 53993 6878398 YP_002220805.1 CDS Lferr_2401 NC_011206.1 2366438 2367922 R PFAM: Integrase catalytic region; KEGG: eba:p2A256 transposase; integrase catalytic subunit complement(2366438..2367922) Acidithiobacillus ferrooxidans ATCC 53993 6878399 YP_002220806.1 CDS Lferr_2402 NC_011206.1 2369548 2370168 R KEGG: sus:Acid_4440 hypothetical protein; hypothetical protein complement(2369548..2370168) Acidithiobacillus ferrooxidans ATCC 53993 6878400 YP_002220807.1 CDS Lferr_2403 NC_011206.1 2370200 2370478 R KEGG: vei:Veis_2526 integrase, catalytic region; hypothetical protein complement(2370200..2370478) Acidithiobacillus ferrooxidans ATCC 53993 6878401 YP_002220808.1 CDS Lferr_2404 NC_011206.1 2370693 2372717 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: tbd:Tbd_2740 heavy metal translocating P-type ATPase; copper-translocating P-type ATPase complement(2370693..2372717) Acidithiobacillus ferrooxidans ATCC 53993 6878402 YP_002220809.1 CDS Lferr_2405 NC_011206.1 2372857 2373384 R hypothetical protein complement(2372857..2373384) Acidithiobacillus ferrooxidans ATCC 53993 6878403 YP_002220810.1 CDS Lferr_2407 NC_011206.1 2373926 2374288 D KEGG: tbd:Tbd_1332 hypothetical protein; hypothetical protein 2373926..2374288 Acidithiobacillus ferrooxidans ATCC 53993 6878405 YP_002220811.1 CDS Lferr_2408 NC_011206.1 2374413 2374721 D hypothetical protein 2374413..2374721 Acidithiobacillus ferrooxidans ATCC 53993 6878406 YP_002220812.1 CDS Lferr_2409 NC_011206.1 2375132 2375995 D KEGG: lpn:lpg1465 hypothetical protein; hypothetical protein 2375132..2375995 Acidithiobacillus ferrooxidans ATCC 53993 6878407 YP_002220813.1 CDS Lferr_2410 NC_011206.1 2376276 2377430 R KEGG: acr:Acry_0525 hypothetical protein; hypothetical protein complement(2376276..2377430) Acidithiobacillus ferrooxidans ATCC 53993 6878408 YP_002220814.1 CDS Lferr_2411 NC_011206.1 2378338 2378691 D PFAM: protein of unknown function DUF74; KEGG: acr:Acry_1752 protein of unknown function DUF74; hypothetical protein 2378338..2378691 Acidithiobacillus ferrooxidans ATCC 53993 6878409 YP_002220815.1 CDS Lferr_2412 NC_011206.1 2378811 2379593 R hypothetical protein complement(2378811..2379593) Acidithiobacillus ferrooxidans ATCC 53993 6878410 YP_002220816.1 CDS Lferr_2413 NC_011206.1 2379805 2382873 R KEGG: rrs:RoseRS_0281 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; HsdR family type I site-specific deoxyribonuclease complement(2379805..2382873) Acidithiobacillus ferrooxidans ATCC 53993 6878411 YP_002220817.1 CDS Lferr_2414 NC_011206.1 2382870 2383655 R hypothetical protein complement(2382870..2383655) Acidithiobacillus ferrooxidans ATCC 53993 6878412 YP_002220818.1 CDS Lferr_2415 NC_011206.1 2383643 2384899 R PFAM: restriction modification system DNA specificity domain; KEGG: mca:MCA0836 type I restriction-modification system, S subunit, EcoA family; restriction modification system DNA specificity protein complement(2383643..2384899) Acidithiobacillus ferrooxidans ATCC 53993 6878413 YP_002220819.1 CDS Lferr_2416 NC_011206.1 2385039 2385260 R KEGG: sru:SRU_0644 hypothetical protein; hypothetical protein complement(2385039..2385260) Acidithiobacillus ferrooxidans ATCC 53993 6878414 YP_002220820.1 CDS Lferr_2417 NC_011206.1 2385295 2385561 R hypothetical protein complement(2385295..2385561) Acidithiobacillus ferrooxidans ATCC 53993 6878415 YP_002220821.1 CDS Lferr_2418 NC_011206.1 2385586 2387163 R PFAM: N-6 DNA methylase; KEGG: mhu:Mhun_2789 N-6 DNA methylase; N-6 DNA methylase complement(2385586..2387163) Acidithiobacillus ferrooxidans ATCC 53993 6878416 YP_002220822.1 CDS Lferr_2419 NC_011206.1 2387229 2387672 D KEGG: bte:BTH_I2738 hypothetical protein; hypothetical protein 2387229..2387672 Acidithiobacillus ferrooxidans ATCC 53993 6878417 YP_002220823.1 CDS Lferr_2420 NC_011206.1 2388374 2389054 R SMART: regulatory protein ArsR; KEGG: lsp:Bsph_3331 hypothetical protein; ArsR family transcriptional regulator complement(2388374..2389054) Acidithiobacillus ferrooxidans ATCC 53993 6878418 YP_002220824.1 CDS Lferr_2421 NC_011206.1 2389164 2389574 D hypothetical protein 2389164..2389574 Acidithiobacillus ferrooxidans ATCC 53993 6878419 YP_002220825.1 CDS Lferr_2422 NC_011206.1 2389672 2390208 D TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: sus:Acid_4002 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2389672..2390208 Acidithiobacillus ferrooxidans ATCC 53993 6878420 YP_002220826.1 CDS Lferr_2423 NC_011206.1 2390246 2391736 R PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: scl:sce6205 putative regulatory protein Ada; AraC family transcriptional regulator complement(2390246..2391736) Acidithiobacillus ferrooxidans ATCC 53993 6878421 YP_002220827.1 CDS Lferr_2424 NC_011206.1 2391968 2392366 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spu:584307 hypothetical LOC584307; Glyoxalase/bleomycin resistance protein/dioxygenase 2391968..2392366 Acidithiobacillus ferrooxidans ATCC 53993 6878422 YP_002220828.1 CDS Lferr_2425 NC_011206.1 2392363 2393106 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B2697 putative short-chain type dehydrogenase/reductase; short-chain dehydrogenase/reductase SDR 2392363..2393106 Acidithiobacillus ferrooxidans ATCC 53993 6878423 YP_002220829.1 CDS Lferr_2426 NC_011206.1 2393313 2393627 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(2393313..2393627) Acidithiobacillus ferrooxidans ATCC 53993 6878424 YP_002220830.1 CDS Lferr_2427 NC_011206.1 2393749 2395068 R KEGG: sma:SAV256 transposase; hypothetical protein complement(2393749..2395068) Acidithiobacillus ferrooxidans ATCC 53993 6878425 YP_002220831.1 CDS Lferr_2428 NC_011206.1 2395235 2395564 D PFAM: small multidrug resistance protein; KEGG: cbd:COXBU7E912_0802 quaternary ammonium compound-resistance protein QacE; small multidrug resistance protein 2395235..2395564 Acidithiobacillus ferrooxidans ATCC 53993 6878426 YP_002220832.1 CDS Lferr_2429 NC_011206.1 2395617 2396159 D PFAM: NADPH-dependent FMN reductase; KEGG: hch:HCH_01405 predicted flavoprotein; NADPH-dependent FMN reductase 2395617..2396159 Acidithiobacillus ferrooxidans ATCC 53993 6878427 YP_002220833.1 CDS Lferr_2430 NC_011206.1 2396163 2396642 D KEGG: cvi:CV_1605 hypothetical protein; hypothetical protein 2396163..2396642 Acidithiobacillus ferrooxidans ATCC 53993 6878428 YP_002220834.1 CDS Lferr_2431 NC_011206.1 2396644 2397129 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: jan:Jann_1696 cupin 2 protein; cupin 2396644..2397129 Acidithiobacillus ferrooxidans ATCC 53993 6878429 YP_002220835.1 CDS Lferr_2432 NC_011206.1 2397140 2397787 D KEGG: rba:RB82 conserved hypothetical protein-putative cysteine protease; transglutaminase 2397140..2397787 Acidithiobacillus ferrooxidans ATCC 53993 6878430 YP_002220836.1 CDS Lferr_2433 NC_011206.1 2397801 2398457 D PFAM: Negative transcriptional regulator; KEGG: hau:Haur_4597 FMN-binding negative transcriptional regulator; FMN-binding negative transcriptional regulator 2397801..2398457 Acidithiobacillus ferrooxidans ATCC 53993 6878431 YP_002220837.1 CDS Lferr_2434 NC_011206.1 2398499 2398693 R hypothetical protein complement(2398499..2398693) Acidithiobacillus ferrooxidans ATCC 53993 6878432 YP_002220838.1 CDS Lferr_2436 NC_011206.1 2399025 2399330 R KEGG: mca:MCA0605 lipoprotein, putative; lipoprotein complement(2399025..2399330) Acidithiobacillus ferrooxidans ATCC 53993 6878434 YP_002220839.1 CDS Lferr_2437 NC_011206.1 2399734 2400312 D KEGG: dge:Dgeo_0770 hypothetical protein; hypothetical protein 2399734..2400312 Acidithiobacillus ferrooxidans ATCC 53993 6878435 YP_002220840.1 CDS Lferr_2438 NC_011206.1 2400344 2401684 R PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: aeh:Mlg_2542 Aminopeptidase P. Metallo peptidase. MEROPS family M24B; peptidase M24 complement(2400344..2401684) Acidithiobacillus ferrooxidans ATCC 53993 6878436 YP_002220841.1 CDS Lferr_2439 NC_011206.1 2401807 2402247 R KEGG: ret:RHE_CH02664 hypothetical protein; hypothetical protein complement(2401807..2402247) Acidithiobacillus ferrooxidans ATCC 53993 6878437 YP_002220842.1 CDS Lferr_2440 NC_011206.1 2402417 2403775 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(2402417..2403775) Acidithiobacillus ferrooxidans ATCC 53993 6878438 YP_002220843.1 CDS Lferr_2441 NC_011206.1 2403772 2404866 R KEGG: noc:Noc_0224 alanine racemase region; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(2403772..2404866) Acidithiobacillus ferrooxidans ATCC 53993 6878439 YP_002220844.1 CDS Lferr_2442 NC_011206.1 2404953 2406326 R KEGG: noc:Noc_0223 DnaB helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase complement(2404953..2406326) Acidithiobacillus ferrooxidans ATCC 53993 6878440 YP_002220845.1 CDS rplI NC_011206.1 2406341 2406787 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2406341..2406787) Acidithiobacillus ferrooxidans ATCC 53993 6878441 YP_002220846.1 CDS Lferr_2444 NC_011206.1 2406825 2407739 R KEGG: aeh:Mlg_0585 hypothetical protein; hypothetical protein complement(2406825..2407739) Acidithiobacillus ferrooxidans ATCC 53993 6878442 YP_002220847.1 CDS Lferr_2445 NC_011206.1 2407755 2408033 R PFAM: ribosomal protein S18; KEGG: pau:PA14_65170 30S ribosomal protein S18; 30S ribosomal protein S18 complement(2407755..2408033) Acidithiobacillus ferrooxidans ATCC 53993 6878443 YP_002220848.1 CDS rpsF NC_011206.1 2408050 2408454 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2408050..2408454) Acidithiobacillus ferrooxidans ATCC 53993 6878444 YP_002220849.1 CDS Lferr_2447 NC_011206.1 2408579 2409643 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: cvi:CV_2073 beta-hexosaminidase; glycoside hydrolase family protein complement(2408579..2409643) Acidithiobacillus ferrooxidans ATCC 53993 6878445 YP_002220850.1 CDS Lferr_2448 NC_011206.1 2409627 2411768 R PFAM: amino acid permease-associated region; KEGG: cbu:CBU_1798 amino acid permease family protein; amino acid permease-associated protein complement(2409627..2411768) Acidithiobacillus ferrooxidans ATCC 53993 6878446 YP_002220851.1 CDS Lferr_2449 NC_011206.1 2411769 2412323 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: hha:Hhal_1262 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein complement(2411769..2412323) Acidithiobacillus ferrooxidans ATCC 53993 6878447 YP_002220852.1 CDS Lferr_2450 NC_011206.1 2412292 2413614 R TIGRFAM: RNA methyltransferase, TrmA family; PFAM: putative RNA methylase; deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: bpa:BPP3051 23S rRNA 5-methyluridine methyltransferase; TrmA family RNA methyltransferase complement(2412292..2413614) Acidithiobacillus ferrooxidans ATCC 53993 6878448 YP_002220853.1 CDS Lferr_2451 NC_011206.1 2413589 2414422 R KEGG: noc:Noc_0800 hypothetical protein; hypothetical protein complement(2413589..2414422) Acidithiobacillus ferrooxidans ATCC 53993 6878449 YP_002220854.1 CDS Lferr_2452 NC_011206.1 2414407 2415099 R KEGG: noc:Noc_0799 hypothetical protein; hypothetical protein complement(2414407..2415099) Acidithiobacillus ferrooxidans ATCC 53993 6878450 YP_002220855.1 CDS Lferr_2453 NC_011206.1 2415105 2417165 R KEGG: noc:Noc_0798 hypothetical protein; hypothetical protein complement(2415105..2417165) Acidithiobacillus ferrooxidans ATCC 53993 6878451 YP_002220856.1 CDS Lferr_2454 NC_011206.1 2417170 2418054 R TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mca:MCA1899 cysteine synthase B; cysteine synthase complement(2417170..2418054) Acidithiobacillus ferrooxidans ATCC 53993 6878452 YP_002220857.1 CDS Lferr_2455 NC_011206.1 2418160 2418870 D TIGRFAM: 6-phosphogluconolactonase; KEGG: nmu:Nmul_A1628 6-phosphogluconolactonase; 6-phosphogluconolactonase 2418160..2418870 Acidithiobacillus ferrooxidans ATCC 53993 6878453 YP_002220858.1 CDS Lferr_2456 NC_011206.1 2418944 2419882 R PFAM: band 7 protein; KEGG: bpt:Bpet2515 hypothetical protein; hypothetical protein complement(2418944..2419882) Acidithiobacillus ferrooxidans ATCC 53993 6878454 YP_002220859.1 CDS Lferr_2457 NC_011206.1 2419858 2420319 R PFAM: protein of unknown function DUF107; KEGG: nmc:NMC1115 hypothetical protein; hypothetical protein complement(2419858..2420319) Acidithiobacillus ferrooxidans ATCC 53993 6878455 YP_002220860.1 CDS Lferr_2458 NC_011206.1 2420335 2422542 R KEGG: mfa:Mfla_1367 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein complement(2420335..2422542) Acidithiobacillus ferrooxidans ATCC 53993 6878456 YP_002220861.1 CDS Lferr_2459 NC_011206.1 2422776 2424083 D TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: net:Neut_1292 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 2422776..2424083 Acidithiobacillus ferrooxidans ATCC 53993 6878457 YP_002220862.1 CDS Lferr_2460 NC_011206.1 2424089 2425795 D PFAM: glycoside hydrolase family 57; KEGG: nmu:Nmul_A0719 glycoside hydrolase, family 57; glycoside hydrolase 2424089..2425795 Acidithiobacillus ferrooxidans ATCC 53993 6878458 YP_002220863.1 CDS Lferr_2461 NC_011206.1 2425792 2427810 D PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1925; Domain of unknown function DUF1926; KEGG: neu:NE2032 glycosyl hydrolase family 57; 4-alpha-glucanotransferase 2425792..2427810 Acidithiobacillus ferrooxidans ATCC 53993 6878459 YP_002220864.1 CDS Lferr_2462 NC_011206.1 2427803 2428750 D PFAM: ROK family protein; KEGG: mfa:Mfla_1371 hypothetical protein; ROK family protein 2427803..2428750 Acidithiobacillus ferrooxidans ATCC 53993 6878460 YP_002220865.1 CDS Lferr_2463 NC_011206.1 2428750 2429559 D KEGG: cpf:CPF_2893 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 2428750..2429559 Acidithiobacillus ferrooxidans ATCC 53993 6878461 YP_002220866.1 CDS Lferr_2464 NC_011206.1 2429572 2430864 R PFAM: protein of unknown function DUF445; KEGG: eba:ebA3091 hypothetical protein; hypothetical protein complement(2429572..2430864) Acidithiobacillus ferrooxidans ATCC 53993 6878462 YP_002220867.1 CDS Lferr_2465 NC_011206.1 2431031 2431219 D KEGG: bmn:BMA10247_A2104 hypothetical protein; hypothetical protein 2431031..2431219 Acidithiobacillus ferrooxidans ATCC 53993 6878463 YP_002220868.1 CDS Lferr_2466 NC_011206.1 2431362 2431832 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mfa:Mfla_2424 single-strand binding protein; ssDNA-binding protein complement(2431362..2431832) Acidithiobacillus ferrooxidans ATCC 53993 6878464 YP_002220869.1 CDS Lferr_2467 NC_011206.1 2431919 2434723 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: tbd:Tbd_0436 excinuclease ABC, A subunit; excinuclease ABC subunit A 2431919..2434723 Acidithiobacillus ferrooxidans ATCC 53993 6878465 YP_002220870.1 CDS Lferr_2468 NC_011206.1 2434789 2435343 D KEGG: tbd:Tbd_2708 hypothetical protein; hypothetical protein 2434789..2435343 Acidithiobacillus ferrooxidans ATCC 53993 6878466 YP_002220871.1 CDS Lferr_2469 NC_011206.1 2435458 2436327 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tbd:Tbd_0519 thioredoxin; thioredoxin 2435458..2436327 Acidithiobacillus ferrooxidans ATCC 53993 6878467 YP_002220872.1 CDS Lferr_2470 NC_011206.1 2436464 2437984 D KEGG: mca:MCA1467 serine protease, MucD; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 2436464..2437984 Acidithiobacillus ferrooxidans ATCC 53993 6878468 YP_002220873.1 CDS Lferr_2471 NC_011206.1 2438004 2438912 R TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: aeh:Mlg_1488 tyrosine recombinase XerD; tyrosine recombinase XerD complement(2438004..2438912) Acidithiobacillus ferrooxidans ATCC 53993 6878469 YP_002220874.1 CDS Lferr_2472 NC_011206.1 2438964 2440199 R KEGG: rrs:RoseRS_3253 hypothetical protein; hypothetical protein complement(2438964..2440199) Acidithiobacillus ferrooxidans ATCC 53993 6878470 YP_002220875.1 CDS Lferr_2473 NC_011206.1 2440214 2440558 R PFAM: ribosomal protein L19; KEGG: shw:Sputw3181_2993 50S ribosomal protein L19; 50S ribosomal protein L19 complement(2440214..2440558) Acidithiobacillus ferrooxidans ATCC 53993 6878471 YP_002220876.1 CDS Lferr_2474 NC_011206.1 2440581 2441324 R KEGG: ppw:PputW619_4155 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(2440581..2441324) Acidithiobacillus ferrooxidans ATCC 53993 6878472 YP_002220877.1 CDS Lferr_2475 NC_011206.1 2441324 2441806 R TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: pap:PSPA7_1375 16S rRNA processing protein RimM; 16S rRNA processing protein RimM complement(2441324..2441806) Acidithiobacillus ferrooxidans ATCC 53993 6878473 YP_002220878.1 CDS rpsP NC_011206.1 2441823 2442083 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2441823..2442083) Acidithiobacillus ferrooxidans ATCC 53993 6878474 YP_002220879.1 CDS Lferr_2477 NC_011206.1 2442154 2443530 R KEGG: saz:Sama_0888 signal recognition particle protein Ffh; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(2442154..2443530) Acidithiobacillus ferrooxidans ATCC 53993 6878475 YP_002220880.1 CDS Lferr_2478 NC_011206.1 2443637 2444350 R TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: bam:Bamb_5598 NADPH-dependent FMN reductase; arsenical resistance protein ArsH complement(2443637..2444350) Acidithiobacillus ferrooxidans ATCC 53993 6878476 YP_002220881.1 CDS Lferr_2479 NC_011206.1 2444365 2445675 R TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: mex:Mext_1911 arsenical pump membrane protein; arsenical pump membrane protein complement(2444365..2445675) Acidithiobacillus ferrooxidans ATCC 53993 6878477 YP_002220882.1 CDS Lferr_2480 NC_011206.1 2445769 2446125 D PFAM: regulatory protein ArsR; KEGG: eba:ebB173 transcriptional regulator, ArsR family; arsR family transcriptional regulator 2445769..2446125 Acidithiobacillus ferrooxidans ATCC 53993 6878478 YP_002220883.1 CDS Lferr_2481 NC_011206.1 2446125 2446616 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rfr:Rfer_3666 protein tyrosine phosphatase; protein tyrosine phosphatase 2446125..2446616 Acidithiobacillus ferrooxidans ATCC 53993 6878479 YP_002220884.1 CDS Lferr_2482 NC_011206.1 2446864 2447901 D PFAM: secretion protein HlyD family protein; KEGG: sfu:Sfum_2390 secretion protein HlyD family protein; secretion protein HlyD family protein 2446864..2447901 Acidithiobacillus ferrooxidans ATCC 53993 6878480 YP_002220885.1 CDS Lferr_2483 NC_011206.1 2447905 2449683 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_1795 ABC transporter related; ABC transporter-like protein 2447905..2449683 Acidithiobacillus ferrooxidans ATCC 53993 6878481 YP_002220886.1 CDS Lferr_2484 NC_011206.1 2449680 2450795 D PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2392 transcriptional regulator, fis family; ABC transporter 2449680..2450795 Acidithiobacillus ferrooxidans ATCC 53993 6878482 YP_002220887.1 CDS Lferr_2485 NC_011206.1 2450795 2451904 D PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter; ABC transporter 2450795..2451904 Acidithiobacillus ferrooxidans ATCC 53993 6878483 YP_002220888.1 CDS Lferr_2486 NC_011206.1 2451945 2452256 D hypothetical protein 2451945..2452256 Acidithiobacillus ferrooxidans ATCC 53993 6878484 YP_002220889.1 CDS Lferr_2487 NC_011206.1 2452268 2452549 R KEGG: tdn:Tmden_1057 hypothetical protein; hypothetical protein complement(2452268..2452549) Acidithiobacillus ferrooxidans ATCC 53993 6878485 YP_002220890.1 CDS Lferr_2488 NC_011206.1 2452777 2453019 R KEGG: mbu:Mbur_0102 hypothetical protein; hypothetical protein complement(2452777..2453019) Acidithiobacillus ferrooxidans ATCC 53993 6878486 YP_002220891.1 CDS Lferr_2489 NC_011206.1 2453099 2453560 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: azo:azo3087 hypothetical protein; Hemerythrin HHE cation-binding domain-containing protein 2453099..2453560 Acidithiobacillus ferrooxidans ATCC 53993 6878487 YP_002220892.1 CDS Lferr_2490 NC_011206.1 2453553 2453999 D PFAM: glycine cleavage H-protein; KEGG: aae:aq_944 glycine cleavage system protein H; glycine cleavage H-protein 2453553..2453999 Acidithiobacillus ferrooxidans ATCC 53993 6878488 YP_002220893.1 CDS Lferr_2491 NC_011206.1 2454045 2454554 R hypothetical protein complement(2454045..2454554) Acidithiobacillus ferrooxidans ATCC 53993 6878489 YP_002220894.1 CDS Lferr_2492 NC_011206.1 2454869 2455321 R PFAM: protein of unknown function DUF192; KEGG: swd:Swoo_0745 protein of unknown function DUF192; hypothetical protein complement(2454869..2455321) Acidithiobacillus ferrooxidans ATCC 53993 6878490 YP_002220895.1 CDS Lferr_2493 NC_011206.1 2456862 2457050 R hypothetical protein complement(2456862..2457050) Acidithiobacillus ferrooxidans ATCC 53993 6878491 YP_002220896.1 CDS Lferr_2494 NC_011206.1 2457452 2458375 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc00831 hypothetical transcription regulator protein; LysR family transcriptional regulator complement(2457452..2458375) Acidithiobacillus ferrooxidans ATCC 53993 6878492 YP_002220897.1 CDS Lferr_2495 NC_011206.1 2458584 2459111 D KEGG: tbd:Tbd_1253 hypothetical protein; hypothetical protein 2458584..2459111 Acidithiobacillus ferrooxidans ATCC 53993 6878493 YP_002220898.1 CDS Lferr_2497 NC_011206.1 2459868 2462087 R PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: mbn:Mboo_0635 hypothetical protein; DNA topoisomerase type IA zn finger domain-containing protein complement(2459868..2462087) Acidithiobacillus ferrooxidans ATCC 53993 6878495 YP_002220899.1 CDS Lferr_2498 NC_011206.1 2462084 2462848 R KEGG: mbn:Mboo_0636 hypothetical protein; hypothetical protein complement(2462084..2462848) Acidithiobacillus ferrooxidans ATCC 53993 6878496 YP_002220900.1 CDS Lferr_2499 NC_011206.1 2462855 2463532 R PFAM: von Willebrand factor type A; KEGG: ecv:APECO1_1163 hypothetical protein; hypothetical protein complement(2462855..2463532) Acidithiobacillus ferrooxidans ATCC 53993 6878497 YP_002220901.1 CDS Lferr_2500 NC_011206.1 2463685 2463840 R hypothetical protein complement(2463685..2463840) Acidithiobacillus ferrooxidans ATCC 53993 6878498 YP_002220902.1 CDS Lferr_2501 NC_011206.1 2463974 2464261 R KEGG: cph:Cpha266_2112 integrase, catalytic region; hypothetical protein complement(2463974..2464261) Acidithiobacillus ferrooxidans ATCC 53993 6878499 YP_002220903.1 CDS Lferr_2502 NC_011206.1 2464624 2465550 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rso:RSc1369 putative DNA polymerase-related protein, bacteriophage-type; phage SPO1 DNA polymerase-like protein complement(2464624..2465550) Acidithiobacillus ferrooxidans ATCC 53993 6878500 YP_002220904.1 CDS Lferr_2503 NC_011206.1 2465717 2466787 D PFAM: Choloylglycine hydrolase; KEGG: syf:Synpcc7942_2150 probable hydrolase; Choloylglycine hydrolase 2465717..2466787 Acidithiobacillus ferrooxidans ATCC 53993 6878501 YP_002220905.1 CDS Lferr_2504 NC_011206.1 2466801 2466947 R hypothetical protein complement(2466801..2466947) Acidithiobacillus ferrooxidans ATCC 53993 6878502 YP_002220906.1 CDS Lferr_2505 NC_011206.1 2467000 2467308 R KEGG: gur:Gura_1479 transcriptional modulator of MazE/toxin, MazF; transcriptional modulator of MazE/toxin MazF complement(2467000..2467308) Acidithiobacillus ferrooxidans ATCC 53993 6878503 YP_002220907.1 CDS Lferr_2506 NC_011206.1 2467380 2467631 R PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_1478 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin MazE complement(2467380..2467631) Acidithiobacillus ferrooxidans ATCC 53993 6878504 YP_002220908.1 CDS Lferr_2507 NC_011206.1 2468161 2468532 D hypothetical protein 2468161..2468532 Acidithiobacillus ferrooxidans ATCC 53993 6878505 YP_002220909.1 CDS Lferr_2508 NC_011206.1 2468635 2469051 R PFAM: PilT protein domain protein; KEGG: neu:NE1373 hypothetical protein; PilT protein domain-containing protein complement(2468635..2469051) Acidithiobacillus ferrooxidans ATCC 53993 6878506 YP_002220910.1 CDS Lferr_2509 NC_011206.1 2469038 2469271 R PFAM: SpoVT/AbrB domain protein; KEGG: nmu:Nmul_A0985 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin MazE complement(2469038..2469271) Acidithiobacillus ferrooxidans ATCC 53993 6878507 YP_002220911.1 CDS Lferr_2510 NC_011206.1 2469312 2469605 R hypothetical protein complement(2469312..2469605) Acidithiobacillus ferrooxidans ATCC 53993 6878508 YP_002220912.1 CDS Lferr_2511 NC_011206.1 2469627 2469977 D KEGG: mfa:Mfla_0149 hypothetical protein; hypothetical protein 2469627..2469977 Acidithiobacillus ferrooxidans ATCC 53993 6878509 YP_002220913.1 CDS Lferr_2512 NC_011206.1 2470074 2471936 D PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: mfa:Mfla_1199 ABC transporter related; ABC transporter-like protein 2470074..2471936 Acidithiobacillus ferrooxidans ATCC 53993 6878510 YP_002220914.1 CDS Lferr_2513 NC_011206.1 2471933 2472256 R hypothetical protein complement(2471933..2472256) Acidithiobacillus ferrooxidans ATCC 53993 6878511 YP_002220915.1 CDS Lferr_2514 NC_011206.1 2472249 2472560 R hypothetical protein complement(2472249..2472560) Acidithiobacillus ferrooxidans ATCC 53993 6878512 YP_002220916.1 CDS Lferr_2515 NC_011206.1 2472557 2474311 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: hch:HCH_05889 penicillin-binding protein 2; peptidoglycan glycosyltransferase complement(2472557..2474311) Acidithiobacillus ferrooxidans ATCC 53993 6878513 YP_002220917.1 CDS Lferr_2516 NC_011206.1 2474460 2476520 R PFAM: O-antigen polymerase; KEGG: dol:Dole_1838 O-antigen polymerase; O-antigen polymerase complement(2474460..2476520) Acidithiobacillus ferrooxidans ATCC 53993 6878514 YP_002220918.1 CDS Lferr_2517 NC_011206.1 2476924 2477892 R PFAM: Polyprenyl synthetase; KEGG: kpn:KPN_03597 octaprenyl-diphosphate synthase; polyprenyl synthetase complement(2476924..2477892) Acidithiobacillus ferrooxidans ATCC 53993 6878516 YP_002220919.1 CDS Lferr_2518 NC_011206.1 2478001 2478957 R KEGG: nmc:NMC1673 hypothetical protein; hypothetical protein complement(2478001..2478957) Acidithiobacillus ferrooxidans ATCC 53993 6878517 YP_002220920.1 CDS Lferr_2519 NC_011206.1 2479047 2480453 R KEGG: spl:Spea_3930 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC complement(2479047..2480453) Acidithiobacillus ferrooxidans ATCC 53993 6878518 YP_002220921.1 CDS Lferr_2520 NC_011206.1 2480450 2481535 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: aeh:Mlg_0015 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB complement(2480450..2481535) Acidithiobacillus ferrooxidans ATCC 53993 6878519 YP_002220922.1 CDS Lferr_2521 NC_011206.1 2481845 2482615 D KEGG: aeh:Mlg_0772 20S proteasome, A and B subunits; 20S proteasome subunits A and B 2481845..2482615 Acidithiobacillus ferrooxidans ATCC 53993 6878520 YP_002220923.1 CDS Lferr_2522 NC_011206.1 2482931 2484394 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: maq:Maqu_3035 protein of unknown function DUF404; hypothetical protein 2482931..2484394 Acidithiobacillus ferrooxidans ATCC 53993 6878521 YP_002220924.1 CDS Lferr_2523 NC_011206.1 2484379 2485365 D PFAM: protein of unknown function DUF403; KEGG: hch:HCH_00984 hypothetical protein; hypothetical protein 2484379..2485365 Acidithiobacillus ferrooxidans ATCC 53993 6878522 YP_002220925.1 CDS Lferr_2524 NC_011206.1 2485405 2488767 D PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: sde:Sde_3099 transglutaminase-like superfamily domain protein; transglutaminase domain-containing protein 2485405..2488767 Acidithiobacillus ferrooxidans ATCC 53993 6878523 YP_002220926.1 CDS Lferr_2525 NC_011206.1 2489225 2491159 D PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: azo:azo2073 PrkA protein; serine protein kinase PrkA 2489225..2491159 Acidithiobacillus ferrooxidans ATCC 53993 6878524 YP_002220927.1 CDS Lferr_2526 NC_011206.1 2491440 2492756 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bte:BTH_I0408 ammonium transporter; ammonium transporter 2491440..2492756 Acidithiobacillus ferrooxidans ATCC 53993 6878525 YP_002220928.1 CDS Lferr_2527 NC_011206.1 2492858 2494162 D PFAM: protein of unknown function DUF444; KEGG: aeh:Mlg_1222 hypothetical protein; hypothetical protein 2492858..2494162 Acidithiobacillus ferrooxidans ATCC 53993 6878526 YP_002220929.1 CDS Lferr_2528 NC_011206.1 2494155 2495630 D PFAM: SpoVR family protein; KEGG: hch:HCH_01479 hypothetical protein; SpoVR family protein 2494155..2495630 Acidithiobacillus ferrooxidans ATCC 53993 6878527 YP_002220930.1 CDS Lferr_2529 NC_011206.1 2495812 2496984 D KEGG: mrd:Mrad2831_2268 hypothetical protein; hypothetical protein 2495812..2496984 Acidithiobacillus ferrooxidans ATCC 53993 6878528 YP_002220931.1 CDS Lferr_2530 NC_011206.1 2497038 2497376 D PFAM: nitrogen regulatory protein P-II; KEGG: bxe:Bxe_A4190 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 2497038..2497376 Acidithiobacillus ferrooxidans ATCC 53993 6878529 YP_002220932.1 CDS Lferr_2531 NC_011206.1 2497431 2498735 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: osa:4324937 hypothetical protein; ammonium transporter 2497431..2498735 Acidithiobacillus ferrooxidans ATCC 53993 6878530 YP_002220933.1 CDS Lferr_2532 NC_011206.1 2498834 2499547 D PFAM: glutamine amidotransferase class-I; KEGG: neu:NE0585 hypothetical protein; glutamine amidotransferase 2498834..2499547 Acidithiobacillus ferrooxidans ATCC 53993 6878531 YP_002220934.1 CDS Lferr_2533 NC_011206.1 2499552 2499938 R hypothetical protein complement(2499552..2499938) Acidithiobacillus ferrooxidans ATCC 53993 6878532 YP_002220935.1 CDS Lferr_2534 NC_011206.1 2500186 2500557 D PFAM: 17 kDa surface antigen; KEGG: bba:Bd2769 putative outer membrane protein; 17 kDa surface antigen 2500186..2500557 Acidithiobacillus ferrooxidans ATCC 53993 6878533 YP_002220936.1 CDS Lferr_2535 NC_011206.1 2500875 2501960 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pla:Plav_3108 rare lipoprotein A; rare lipoprotein A 2500875..2501960 Acidithiobacillus ferrooxidans ATCC 53993 6878534 YP_002220937.1 CDS Lferr_2536 NC_011206.1 2501941 2502249 R KEGG: ppu:PP_1576 immunity protein, putative; hypothetical protein complement(2501941..2502249) Acidithiobacillus ferrooxidans ATCC 53993 6878535 YP_002220938.1 CDS Lferr_2537 NC_011206.1 2502246 2503562 R PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: acr:Acry_0391 TrkA-N domain protein; voltage-gated potassium channel complement(2502246..2503562) Acidithiobacillus ferrooxidans ATCC 53993 6878536 YP_002220939.1 CDS Lferr_2538 NC_011206.1 2503674 2504921 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: acr:Acry_0248 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(2503674..2504921) Acidithiobacillus ferrooxidans ATCC 53993 6878537 YP_002220940.1 CDS Lferr_2539 NC_011206.1 2504955 2506574 R PFAM: phosphoglucose isomerase (PGI); KEGG: gvi:gll1692 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase complement(2504955..2506574) Acidithiobacillus ferrooxidans ATCC 53993 6878538 YP_002220941.1 CDS Lferr_2540 NC_011206.1 2507018 2508709 D PFAM: glycosyl transferase family 39; KEGG: cte:CT0363 hypothetical protein; glycosyl transferase 2507018..2508709 Acidithiobacillus ferrooxidans ATCC 53993 6878539 YP_002220942.1 CDS Lferr_2541 NC_011206.1 2508823 2509200 D PFAM: Camphor resistance CrcB protein; KEGG: acr:Acry_0304 CrcB protein; camphor resistance protein CrcB 2508823..2509200 Acidithiobacillus ferrooxidans ATCC 53993 6878540 YP_002220943.1 CDS Lferr_2542 NC_011206.1 2509211 2509528 D PFAM: protein of unknown function DUF190; KEGG: mca:MCA1930 hypothetical protein; hypothetical protein 2509211..2509528 Acidithiobacillus ferrooxidans ATCC 53993 6878541 YP_002220944.1 CDS Lferr_2543 NC_011206.1 2509622 2510500 D KEGG: pfu:PF1418 hypothetical protein; hypothetical protein 2509622..2510500 Acidithiobacillus ferrooxidans ATCC 53993 6878542 YP_002220945.1 CDS Lferr_2544 NC_011206.1 2510602 2511861 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_5666 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2510602..2511861 Acidithiobacillus ferrooxidans ATCC 53993 6878543 YP_002220946.1 CDS Lferr_2545 NC_011206.1 2511955 2512536 D PFAM: protein of unknown function DUF1211; KEGG: dar:Daro_3436 protein of unknown function DUF1211; hypothetical protein 2511955..2512536 Acidithiobacillus ferrooxidans ATCC 53993 6878544 YP_002220947.1 CDS Lferr_2546 NC_011206.1 2512667 2516059 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: dac:Daci_0520 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 2512667..2516059 Acidithiobacillus ferrooxidans ATCC 53993 6878545 YP_002220948.1 CDS Lferr_2547 NC_011206.1 2516056 2519652 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: dac:Daci_0521 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 2516056..2519652 Acidithiobacillus ferrooxidans ATCC 53993 6878546 YP_002220949.1 CDS Lferr_2548 NC_011206.1 2519649 2521601 D KEGG: dac:Daci_0522 exodeoxyribonuclease V, alpha subunit; TIGRFAM: exodeoxyribonuclease V, alpha subunit; SMART: AAA ATPase; exodeoxyribonuclease V subunit alpha 2519649..2521601 Acidithiobacillus ferrooxidans ATCC 53993 6878547 YP_002220950.1 CDS Lferr_2549 NC_011206.1 2521764 2521892 D hypothetical protein 2521764..2521892 Acidithiobacillus ferrooxidans ATCC 53993 6878548 YP_002220951.1 CDS Lferr_2550 NC_011206.1 2521874 2522698 D PFAM: transcriptional regulator domain protein; KEGG: eba:ebA3019 phosphate regulon transcriptional regulatory protein PhoB; winged helix family two component transcriptional regulator 2521874..2522698 Acidithiobacillus ferrooxidans ATCC 53993 6878549 YP_002220952.1 CDS Lferr_2551 NC_011206.1 2522883 2525216 D PFAM: TonB-dependent receptor; KEGG: acr:Acry_3609 TonB-dependent receptor; TonB-dependent receptor 2522883..2525216 Acidithiobacillus ferrooxidans ATCC 53993 6878550 YP_002220953.1 CDS Lferr_2552 NC_011206.1 2525412 2527775 D PFAM: TonB-dependent receptor; KEGG: acr:Acry_3609 TonB-dependent receptor; TonB-dependent receptor 2525412..2527775 Acidithiobacillus ferrooxidans ATCC 53993 6878551 YP_002220954.1 CDS Lferr_2553 NC_011206.1 2527969 2528547 D KEGG: mag:amb1922 hypothetical protein; hypothetical protein 2527969..2528547 Acidithiobacillus ferrooxidans ATCC 53993 6878552 YP_002220955.1 CDS Lferr_2554 NC_011206.1 2528692 2528937 R hypothetical protein complement(2528692..2528937) Acidithiobacillus ferrooxidans ATCC 53993 6878553 YP_002220956.1 CDS Lferr_2555 NC_011206.1 2528986 2529090 R hypothetical protein complement(2528986..2529090) Acidithiobacillus ferrooxidans ATCC 53993 6878554 YP_002220957.1 CDS Lferr_2556 NC_011206.1 2529341 2531917 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pna:Pnap_3565 ATPase, P-type (transporting), HAD superfamily, subfamily IC; HAD superfamily P-type ATPase complement(2529341..2531917) Acidithiobacillus ferrooxidans ATCC 53993 6878555 YP_002220958.1 CDS Lferr_2557 NC_011206.1 2531923 2532081 D hypothetical protein 2531923..2532081 Acidithiobacillus ferrooxidans ATCC 53993 6878556 YP_002220959.1 CDS Lferr_2558 NC_011206.1 2532066 2532491 R TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: abo:ABO_1531 methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(2532066..2532491) Acidithiobacillus ferrooxidans ATCC 53993 6878557 YP_002220960.1 CDS Lferr_2559 NC_011206.1 2532497 2533132 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: abo:ABO_1530 methionine sulfoxide peptide reductase; peptide methionine sulfoxide reductase complement(2532497..2533132) Acidithiobacillus ferrooxidans ATCC 53993 6878558 YP_002220961.1 CDS Lferr_2560 NC_011206.1 2533245 2534153 D KEGG: maq:Maqu_1397 transcriptional regulator, fis family; hypothetical protein 2533245..2534153 Acidithiobacillus ferrooxidans ATCC 53993 6878559 YP_002220962.1 CDS Lferr_2561 NC_011206.1 2534213 2534869 D KEGG: tbd:Tbd_2441 nicotinate-nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 2534213..2534869 Acidithiobacillus ferrooxidans ATCC 53993 6878560 YP_002220963.1 CDS Lferr_2562 NC_011206.1 2534893 2535249 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pap:PSPA7_1104 hypothetical protein; iojap family protein 2534893..2535249 Acidithiobacillus ferrooxidans ATCC 53993 6878561 YP_002220964.1 CDS Lferr_2563 NC_011206.1 2535256 2535729 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2535256..2535729 Acidithiobacillus ferrooxidans ATCC 53993 6878562 YP_002220965.1 CDS Lferr_2564 NC_011206.1 2535737 2536174 D hypothetical protein 2535737..2536174 Acidithiobacillus ferrooxidans ATCC 53993 6878563 YP_002220966.1 CDS Lferr_2565 NC_011206.1 2536171 2537052 D KEGG: uma:UM01093.1 hypothetical protein; hypothetical protein 2536171..2537052 Acidithiobacillus ferrooxidans ATCC 53993 6878564 YP_002220967.1 CDS Lferr_2566 NC_011206.1 2537049 2537636 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: psp:PSPPH_4169 Maf-like protein; maf protein 2537049..2537636 Acidithiobacillus ferrooxidans ATCC 53993 6878565 YP_002220968.1 CDS Lferr_2567 NC_011206.1 2537633 2539123 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: noc:Noc_2657 ribonuclease E and G; Rne/Rng family ribonuclease 2537633..2539123 Acidithiobacillus ferrooxidans ATCC 53993 6878566 YP_002220969.1 CDS Lferr_2568 NC_011206.1 2539149 2540522 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: mfa:Mfla_1055 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma-54 specific Fis family transcriptional regulator complement(2539149..2540522) Acidithiobacillus ferrooxidans ATCC 53993 6878567 YP_002220970.1 CDS Lferr_2569 NC_011206.1 2540529 2540840 R hypothetical protein complement(2540529..2540840) Acidithiobacillus ferrooxidans ATCC 53993 6878568 YP_002220971.1 CDS Lferr_2570 NC_011206.1 2540821 2542368 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: noc:Noc_0783 signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2540821..2542368) Acidithiobacillus ferrooxidans ATCC 53993 6878569 YP_002220972.1 CDS Lferr_2571 NC_011206.1 2542543 2542773 R KEGG: mms:mma_2155 hypothetical protein; hypothetical protein complement(2542543..2542773) Acidithiobacillus ferrooxidans ATCC 53993 6878570 YP_002220973.1 CDS Lferr_2572 NC_011206.1 2543064 2543345 R PFAM: Fe(II) trafficking protein YggX; KEGG: aeh:Mlg_2696 hypothetical protein; hypothetical protein complement(2543064..2543345) Acidithiobacillus ferrooxidans ATCC 53993 6878571 YP_002220974.1 CDS Lferr_2573 NC_011206.1 2543797 2545269 D KEGG: mfa:Mfla_1268 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2543797..2545269 Acidithiobacillus ferrooxidans ATCC 53993 6878572 YP_002220975.1 CDS Lferr_2574 NC_011206.1 2545290 2546405 D KEGG: cph:Cpha266_2346 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein 2545290..2546405 Acidithiobacillus ferrooxidans ATCC 53993 6878573 YP_002220976.1 CDS Lferr_2575 NC_011206.1 2546456 2547589 D PFAM: ABC-2 type transporter; KEGG: bur:Bcep18194_A3868 hypothetical protein; ABC transporter 2546456..2547589 Acidithiobacillus ferrooxidans ATCC 53993 6878574 YP_002220977.1 CDS Lferr_2576 NC_011206.1 2547586 2548239 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bch:Bcen2424_0776 ABC transporter related; ABC transporter-like protein 2547586..2548239 Acidithiobacillus ferrooxidans ATCC 53993 6878575 YP_002220978.1 CDS Lferr_2577 NC_011206.1 2548331 2549080 D TIGRFAM: methyltransferase FkbM family; KEGG: bte:BTH_I1328 methyltransferase, FkbM family domain protein; FkbM family methyltransferase 2548331..2549080 Acidithiobacillus ferrooxidans ATCC 53993 6878576 YP_002220979.1 CDS Lferr_2578 NC_011206.1 2549132 2549773 D hypothetical protein 2549132..2549773 Acidithiobacillus ferrooxidans ATCC 53993 6878577 YP_002220980.1 CDS Lferr_2579 NC_011206.1 2549795 2551624 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_0758 glycosyl transferase, group 1; group 1 glycosyl transferase 2549795..2551624 Acidithiobacillus ferrooxidans ATCC 53993 6878578 YP_002220981.1 CDS Lferr_2580 NC_011206.1 2551797 2552111 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(2551797..2552111) Acidithiobacillus ferrooxidans ATCC 53993 6878579 YP_002220982.1 CDS Lferr_2581 NC_011206.1 2552233 2553552 R KEGG: sma:SAV256 transposase; hypothetical protein complement(2552233..2553552) Acidithiobacillus ferrooxidans ATCC 53993 6878580 YP_002220983.1 CDS Lferr_2582 NC_011206.1 2553599 2557597 D PFAM: glycosyl transferase group 1; KEGG: mtp:Mthe_1073 glycosyl transferase, group 1; group 1 glycosyl transferase 2553599..2557597 Acidithiobacillus ferrooxidans ATCC 53993 6878581 YP_002220984.1 CDS Lferr_2583 NC_011206.1 2557607 2559256 D KEGG: bte:BTH_I1346 hypothetical protein; hypothetical protein 2557607..2559256 Acidithiobacillus ferrooxidans ATCC 53993 6878582 YP_002220985.1 CDS Lferr_2584 NC_011206.1 2559295 2560071 D KEGG: psp:PSPPH_1694 hypothetical protein; hypothetical protein 2559295..2560071 Acidithiobacillus ferrooxidans ATCC 53993 6878583 YP_002220986.1 CDS Lferr_2585 NC_011206.1 2560226 2561107 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2560226..2561107 Acidithiobacillus ferrooxidans ATCC 53993 6878584 YP_002220987.1 CDS Lferr_2586 NC_011206.1 2561107 2562951 D KEGG: hmo:HM1_1168 sulfate adenylate transferase, large subunit/adenylylsulfate kinase; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; adenylylsulfate kinase; elongation factor Tu domain 2 protein; sulfate adenylyltransferase large subunit 2561107..2562951 Acidithiobacillus ferrooxidans ATCC 53993 6878585 YP_002220988.1 CDS Lferr_2587 NC_011206.1 2562980 2563837 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: tdn:Tmden_0646 3(2),5 -bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 2562980..2563837 Acidithiobacillus ferrooxidans ATCC 53993 6878586 YP_002220989.1 CDS Lferr_2588 NC_011206.1 2563815 2565572 D KEGG: cbb:CLD_2360 hypothetical protein; hypothetical protein 2563815..2565572 Acidithiobacillus ferrooxidans ATCC 53993 6878587 YP_002220990.1 CDS Lferr_2589 NC_011206.1 2565631 2566824 D PFAM: polysaccharide export protein; KEGG: bur:Bcep18194_A3859 polysaccharide export protein; polysaccharide export protein 2565631..2566824 Acidithiobacillus ferrooxidans ATCC 53993 6878588 YP_002220991.1 CDS Lferr_2590 NC_011206.1 2566838 2568007 D PFAM: glycosyl transferase group 1; KEGG: bte:BTH_I1326 glycosyltransferase, putative; group 1 glycosyl transferase 2566838..2568007 Acidithiobacillus ferrooxidans ATCC 53993 6878589 YP_002220992.1 CDS Lferr_2591 NC_011206.1 2568004 2568156 D hypothetical protein 2568004..2568156 Acidithiobacillus ferrooxidans ATCC 53993 6878590 YP_002220993.1 CDS Lferr_2592 NC_011206.1 2568153 2569172 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: aae:aq_1082 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase 2568153..2569172 Acidithiobacillus ferrooxidans ATCC 53993 6878591 YP_002220994.1 CDS Lferr_2593 NC_011206.1 2569203 2569955 D PFAM: Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: amr:AM1_1895 hypothetical protein; type 11 methyltransferase 2569203..2569955 Acidithiobacillus ferrooxidans ATCC 53993 6878592 YP_002220995.1 CDS Lferr_2594 NC_011206.1 2569964 2570782 D PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: psp:PSPPH_0956 WbbD; type 11 methyltransferase 2569964..2570782 Acidithiobacillus ferrooxidans ATCC 53993 6878593 YP_002220996.1 CDS Lferr_2595 NC_011206.1 2570826 2571122 D hypothetical protein 2570826..2571122 Acidithiobacillus ferrooxidans ATCC 53993 6878594 YP_002220997.1 CDS Lferr_2596 NC_011206.1 2571521 2571763 D TIGRFAM: prevent-host-death family protein; KEGG: mes:Meso_4551 prevent-host-death family protein; prevent-host-death family protein 2571521..2571763 Acidithiobacillus ferrooxidans ATCC 53993 6878595 YP_002220998.1 CDS Lferr_2597 NC_011206.1 2571763 2572215 D KEGG: pnu:Pnuc_0693 PilT protein domain protein; hypothetical protein 2571763..2572215 Acidithiobacillus ferrooxidans ATCC 53993 6878596 YP_002220999.1 CDS Lferr_2598 NC_011206.1 2572340 2574196 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2516 ABC transporter-related protein; ABC transporter-like protein complement(2572340..2574196) Acidithiobacillus ferrooxidans ATCC 53993 6878597 YP_002221000.1 CDS Lferr_2599 NC_011206.1 2574258 2574710 R PFAM: GCN5-related N-acetyltransferase; KEGG: tbd:Tbd_1275 hypothetical protein; N-acetyltransferase GCN5 complement(2574258..2574710) Acidithiobacillus ferrooxidans ATCC 53993 6878598 YP_002221001.1 CDS Lferr_2600 NC_011206.1 2574719 2576221 R PFAM: extracellular solute-binding protein family 5; KEGG: acr:Acry_1185 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein complement(2574719..2576221) Acidithiobacillus ferrooxidans ATCC 53993 6878599 YP_002221002.1 CDS Lferr_2601 NC_011206.1 2576457 2577467 R KEGG: mxa:MXAN_4664 oligopeptide/dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(2576457..2577467) Acidithiobacillus ferrooxidans ATCC 53993 6878600 YP_002221003.1 CDS Lferr_2602 NC_011206.1 2577464 2578531 R KEGG: azc:AZC_1983 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(2577464..2578531) Acidithiobacillus ferrooxidans ATCC 53993 6878601 YP_002221004.1 CDS Lferr_2603 NC_011206.1 2578533 2579444 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acr:Acry_1187 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2578533..2579444) Acidithiobacillus ferrooxidans ATCC 53993 6878602 YP_002221005.1 CDS Lferr_2604 NC_011206.1 2579437 2580399 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acr:Acry_1186 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2579437..2580399) Acidithiobacillus ferrooxidans ATCC 53993 6878603 YP_002221006.1 CDS Lferr_2605 NC_011206.1 2580442 2582085 R PFAM: extracellular solute-binding protein family 5; KEGG: acr:Acry_1185 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein complement(2580442..2582085) Acidithiobacillus ferrooxidans ATCC 53993 6878604 YP_002221007.1 CDS Lferr_2606 NC_011206.1 2582082 2583923 R KEGG: spe:Spro_2485 hypothetical protein; hypothetical protein complement(2582082..2583923) Acidithiobacillus ferrooxidans ATCC 53993 6878605 YP_002221008.1 CDS Lferr_2607 NC_011206.1 2583916 2585859 R KEGG: spe:Spro_2485 hypothetical protein; hypothetical protein complement(2583916..2585859) Acidithiobacillus ferrooxidans ATCC 53993 6878606 YP_002221009.1 CDS Lferr_2608 NC_011206.1 2586764 2589238 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX1075 TonB-dependent outer membrane receptor; TonB-dependent receptor 2586764..2589238 Acidithiobacillus ferrooxidans ATCC 53993 6878607 YP_002221010.1 CDS Lferr_2609 NC_011206.1 2589278 2589952 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: vco:VC0395_A1620 hypothetical protein; multiple antibiotic resistance (MarC)-like protein 2589278..2589952 Acidithiobacillus ferrooxidans ATCC 53993 6878608 YP_002221011.1 CDS Lferr_2610 NC_011206.1 2589971 2591038 D PFAM: Lactate/malate dehydrogenase; KEGG: mja:MJ0490 malate dehydrogenase; lactate/malate dehydrogenase 2589971..2591038 Acidithiobacillus ferrooxidans ATCC 53993 6878609 YP_002221012.1 CDS Lferr_2611 NC_011206.1 2591026 2591298 D PFAM: amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 2591026..2591298 Acidithiobacillus ferrooxidans ATCC 53993 6878610 YP_002221013.1 CDS Lferr_2612 NC_011206.1 2591370 2592065 D KEGG: acr:Acry_1184 TonB family protein; hypothetical protein 2591370..2592065 Acidithiobacillus ferrooxidans ATCC 53993 6878611 YP_002221014.1 CDS Lferr_2613 NC_011206.1 2592103 2592750 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: acr:Acry_3610 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2592103..2592750 Acidithiobacillus ferrooxidans ATCC 53993 6878612 YP_002221015.1 CDS Lferr_2614 NC_011206.1 2592782 2593180 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: acr:Acry_1461 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2592782..2593180 Acidithiobacillus ferrooxidans ATCC 53993 6878613 YP_002221016.1 CDS Lferr_2615 NC_011206.1 2593213 2593695 D PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB1390 putative acetyltransferase; N-acetyltransferase GCN5 2593213..2593695 Acidithiobacillus ferrooxidans ATCC 53993 6878614 YP_002221017.1 CDS Lferr_2616 NC_011206.1 2594171 2595745 D PFAM: glycosyl transferase group 1; KEGG: bmn:BMA10247_2181 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 2594171..2595745 Acidithiobacillus ferrooxidans ATCC 53993 6878615 YP_002221018.1 CDS Lferr_2617 NC_011206.1 2595967 2603427 D PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: bbr:BB2918 putative type I polyketide synthase; Beta-ketoacyl synthase 2595967..2603427 Acidithiobacillus ferrooxidans ATCC 53993 6878616 YP_002221019.1 CDS Lferr_2618 NC_011206.1 2603429 2604754 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Orn/Lys/Arg decarboxylase major region; aminotransferase class I and II; aminotransferase class-III; KEGG: bpt:Bpet2310 hypothetical protein; 8-amino-7-oxononanoate synthase 2603429..2604754 Acidithiobacillus ferrooxidans ATCC 53993 6878617 YP_002221020.1 CDS Lferr_2619 NC_011206.1 2604823 2605866 D PFAM: Capsule polysaccharide biosynthesis protein; KEGG: mes:Meso_2755 capsule polysaccharide biosynthesis; capsular polysaccharide biosynthesis protein 2604823..2605866 Acidithiobacillus ferrooxidans ATCC 53993 6878618 YP_002221021.1 CDS Lferr_2620 NC_011206.1 2605863 2607173 D PFAM: Capsule polysaccharide biosynthesis protein; KEGG: bpa:BPP2954 capsular polysaccharide export protein; capsular polysaccharide biosynthesis protein 2605863..2607173 Acidithiobacillus ferrooxidans ATCC 53993 6878619 YP_002221022.1 CDS Lferr_2621 NC_011206.1 2607182 2607853 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: net:Neut_1974 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2607182..2607853 Acidithiobacillus ferrooxidans ATCC 53993 6878620 YP_002221023.1 CDS Lferr_2622 NC_011206.1 2607846 2609438 D PFAM: sulfatase; KEGG: neu:NE1332 possible capsular polysaccharide biosynthesis/export transmembrane; sulfatase 2607846..2609438 Acidithiobacillus ferrooxidans ATCC 53993 6878621 YP_002221024.1 CDS Lferr_2623 NC_011206.1 2609412 2610521 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; helix-hairpin-helix motif; HhH-GPD family protein; KEGG: dar:Daro_0064 A/G-specific adenine glycosylase MutY; A/G-specific adenine glycosylase complement(2609412..2610521) Acidithiobacillus ferrooxidans ATCC 53993 6878622 YP_002221025.1 CDS Lferr_2624 NC_011206.1 2610518 2611768 R KEGG: csa:Csal_2712 protein of unknown function DUF748; hypothetical protein complement(2610518..2611768) Acidithiobacillus ferrooxidans ATCC 53993 6878623 YP_002221026.1 CDS Lferr_2625 NC_011206.1 2611788 2613500 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: noc:Noc_2800 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(2611788..2613500) Acidithiobacillus ferrooxidans ATCC 53993 6878624 YP_002221027.1 CDS Lferr_2626 NC_011206.1 2613497 2613769 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: azo:azo3781 putative phosphocarrier protein HPr; PTS system phosphocarrier protein HPr complement(2613497..2613769) Acidithiobacillus ferrooxidans ATCC 53993 6878625 YP_002221028.1 CDS Lferr_2627 NC_011206.1 2613766 2613876 R hypothetical protein complement(2613766..2613876) Acidithiobacillus ferrooxidans ATCC 53993 6878626 YP_002221029.1 CDS Lferr_2628 NC_011206.1 2613877 2614293 R PFAM: PTS system fructose subfamily IIA component; KEGG: mms:mma_0173 IIA component of sugar transport PTS system; PTS system fructose subfamily transporter subunit IIA complement(2613877..2614293) Acidithiobacillus ferrooxidans ATCC 53993 6878627 YP_002221030.1 CDS Lferr_2629 NC_011206.1 2614290 2615189 R PFAM: conserved hypothetical protein; KEGG: nmu:Nmul_A0081 uncharacterized P-loop ATPase protein UPF0042; hypothetical protein complement(2614290..2615189) Acidithiobacillus ferrooxidans ATCC 53993 6878628 YP_002221031.1 CDS Lferr_2630 NC_011206.1 2615189 2616121 R PFAM: HPr serine kinase domain protein; KEGG: mfa:Mfla_0144 HPr kinase/phosphorylase; HPr kinase complement(2615189..2616121) Acidithiobacillus ferrooxidans ATCC 53993 6878629 YP_002221032.1 CDS Lferr_2631 NC_011206.1 2616176 2616622 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: reu:Reut_A0353 PTS IIA-like nitrogen-regulatory protein PtsN; PTS IIA-like nitrogen-regulatory protein PtsN complement(2616176..2616622) Acidithiobacillus ferrooxidans ATCC 53993 6878630 YP_002221033.1 CDS Lferr_2632 NC_011206.1 2616629 2616970 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: tbd:Tbd_0532 possible sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA complement(2616629..2616970) Acidithiobacillus ferrooxidans ATCC 53993 6878631 YP_002221034.1 CDS Lferr_2633 NC_011206.1 2617074 2618501 R TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: sde:Sde_3179 RNA polymerase factor sigma-54; RNA polymerase sigma-54 subunit RpoN complement(2617074..2618501) Acidithiobacillus ferrooxidans ATCC 53993 6878632 YP_002221035.1 CDS Lferr_2634 NC_011206.1 2618514 2619239 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_3457 ABC transporter related; ABC transporter-like protein complement(2618514..2619239) Acidithiobacillus ferrooxidans ATCC 53993 6878633 YP_002221036.1 CDS Lferr_2635 NC_011206.1 2619236 2619784 R TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: gme:Gmet_1281 OstA-like protein; lipopolysaccharide transport periplasmic protein LptA complement(2619236..2619784) Acidithiobacillus ferrooxidans ATCC 53993 6878634 YP_002221037.1 CDS Lferr_2636 NC_011206.1 2619756 2620325 R PFAM: protein of unknown function DUF1239; KEGG: saz:Sama_3085 hypothetical protein; hypothetical protein complement(2619756..2620325) Acidithiobacillus ferrooxidans ATCC 53993 6878635 YP_002221038.1 CDS Lferr_2637 NC_011206.1 2620351 2620893 R TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: gur:Gura_2976 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(2620351..2620893) Acidithiobacillus ferrooxidans ATCC 53993 6878636 YP_002221039.1 CDS Lferr_2638 NC_011206.1 2620902 2621888 R KEGG: aeh:Mlg_2225 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(2620902..2621888) Acidithiobacillus ferrooxidans ATCC 53993 6878637 YP_002221040.1 CDS Lferr_2639 NC_011206.1 2621898 2622176 R hypothetical protein complement(2621898..2622176) Acidithiobacillus ferrooxidans ATCC 53993 6878638 YP_002221041.1 CDS Lferr_2640 NC_011206.1 2622208 2622642 R hypothetical protein complement(2622208..2622642) Acidithiobacillus ferrooxidans ATCC 53993 6878639 YP_002221042.1 CDS Lferr_2641 NC_011206.1 2622632 2623321 R PFAM: Nucleotidyl transferase; KEGG: mca:MCA0599 nucleotidyltransferase family protein; nucleotidyl transferase complement(2622632..2623321) Acidithiobacillus ferrooxidans ATCC 53993 6878640 YP_002221043.1 CDS Lferr_2642 NC_011206.1 2623294 2624322 R PFAM: aminoglycoside phosphotransferase; KEGG: maq:Maqu_3511 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(2623294..2624322) Acidithiobacillus ferrooxidans ATCC 53993 6878641 YP_002221044.1 CDS Lferr_2643 NC_011206.1 2624352 2626535 D PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: bur:Bcep18194_A6038 organic solvent tolerance protein; organic solvent tolerance protein 2624352..2626535 Acidithiobacillus ferrooxidans ATCC 53993 6878642 YP_002221045.1 CDS Lferr_2644 NC_011206.1 2626535 2627968 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: noc:Noc_1723 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain 2626535..2627968 Acidithiobacillus ferrooxidans ATCC 53993 6878643 YP_002221046.1 CDS Lferr_2645 NC_011206.1 2627961 2628767 D PFAM: ABC-2 type transporter; KEGG: bam:Bamb_0339 ABC-2 type transporter; ABC transporter 2627961..2628767 Acidithiobacillus ferrooxidans ATCC 53993 6878644 YP_002221047.1 CDS Lferr_2646 NC_011206.1 2628778 2629110 D PFAM: BolA family protein; KEGG: mfa:Mfla_0244 BolA-like protein; BolA family protein 2628778..2629110 Acidithiobacillus ferrooxidans ATCC 53993 6878645 YP_002221048.1 CDS Lferr_2647 NC_011206.1 2629142 2629474 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: nmu:Nmul_A2639 glutaredoxin-related protein; glutaredoxin-like protein 2629142..2629474 Acidithiobacillus ferrooxidans ATCC 53993 6878646 YP_002221049.1 CDS Lferr_2648 NC_011206.1 2629484 2630755 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2629484..2630755 Acidithiobacillus ferrooxidans ATCC 53993 6878647 YP_002221050.1 CDS Lferr_2649 NC_011206.1 2630752 2631399 D KEGG: bpd:BURPS668_3667 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase 2630752..2631399 Acidithiobacillus ferrooxidans ATCC 53993 6878648 YP_002221051.1 CDS Lferr_2650 NC_011206.1 2631396 2632697 D PFAM: histidinol dehydrogenase; KEGG: pmy:Pmen_0884 histidinol dehydrogenase; histidinol dehydrogenase 2631396..2632697 Acidithiobacillus ferrooxidans ATCC 53993 6878649 YP_002221052.1 CDS Lferr_2651 NC_011206.1 2632694 2633773 D TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: nmu:Nmul_A0818 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 2632694..2633773 Acidithiobacillus ferrooxidans ATCC 53993 6878650 YP_002221053.1 CDS Lferr_2652 NC_011206.1 2633770 2634369 D PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: abo:ABO_2281 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 2633770..2634369 Acidithiobacillus ferrooxidans ATCC 53993 6878651 YP_002221054.1 CDS hisH NC_011206.1 2634366 2635037 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2634366..2635037 Acidithiobacillus ferrooxidans ATCC 53993 6878652 YP_002221055.1 CDS Lferr_2654 NC_011206.1 2635077 2635805 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2635077..2635805 Acidithiobacillus ferrooxidans ATCC 53993 6878653 YP_002221056.1 CDS Lferr_2655 NC_011206.1 2635810 2636571 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2635810..2636571 Acidithiobacillus ferrooxidans ATCC 53993 6878654 YP_002221057.1 CDS Lferr_2656 NC_011206.1 2636658 2637350 D TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: syg:sync_1899 histidine biosynthesis bifunctional protein HisIE; phosphoribosyl-ATP diphosphatase 2636658..2637350 Acidithiobacillus ferrooxidans ATCC 53993 6878655 YP_002221058.1 CDS Lferr_2657 NC_011206.1 2637430 2637648 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cps:CPS_0163 Sec-independent protein translocase protein TatA; twin-arginine translocation protein, TatA/E family subunit 2637430..2637648 Acidithiobacillus ferrooxidans ATCC 53993 6878656 YP_002221059.1 CDS Lferr_2658 NC_011206.1 2637655 2638023 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: prw:PsycPRwf_0715 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB 2637655..2638023 Acidithiobacillus ferrooxidans ATCC 53993 6878657 YP_002221060.1 CDS Lferr_2659 NC_011206.1 2638162 2638968 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: mgm:Mmc1_1617 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 2638162..2638968 Acidithiobacillus ferrooxidans ATCC 53993 6878658 YP_002221061.1 CDS rbcL NC_011206.1 2639264 2640685 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 2639264..2640685 Acidithiobacillus ferrooxidans ATCC 53993 6878659 YP_002221062.1 CDS Lferr_2661 NC_011206.1 2640716 2641072 D PFAM: ribulose bisphosphate carboxylase small chain; KEGG: tbd:Tbd_2623 ribulose-bisphosphate carboxylase form I small chain; ribulose-bisphosphate carboxylase 2640716..2641072 Acidithiobacillus ferrooxidans ATCC 53993 6878660 YP_002221063.1 CDS Lferr_2662 NC_011206.1 2641228 2642031 D PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: neu:NE1919 nitric oxide reductase NorQ protein; CbbQ/NirQ/NorQ domain-containing protein 2641228..2642031 Acidithiobacillus ferrooxidans ATCC 53993 6878661 YP_002221064.1 CDS Lferr_2663 NC_011206.1 2642083 2644401 D PFAM: von Willebrand factor type A; KEGG: neu:NE1918 von Willebrand factor type A domain; hypothetical protein 2642083..2644401 Acidithiobacillus ferrooxidans ATCC 53993 6878662 YP_002221065.1 CDS Lferr_2664 NC_011206.1 2644679 2647303 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; KEGG: azo:azo3061 GGDEF/EAL/PAS/PAC/GAF-domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2644679..2647303 Acidithiobacillus ferrooxidans ATCC 53993 6878663 YP_002221066.1 CDS Lferr_2665 NC_011206.1 2647426 2648700 R KEGG: hha:Hhal_0942 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase complement(2647426..2648700) Acidithiobacillus ferrooxidans ATCC 53993 6878664 YP_002221067.1 CDS pyrB NC_011206.1 2648706 2649689 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(2648706..2649689) Acidithiobacillus ferrooxidans ATCC 53993 6878665 YP_002221068.1 CDS Lferr_2667 NC_011206.1 2649686 2650192 R PFAM: phosphoribosyltransferase; KEGG: aeh:Mlg_0347 pyrimidine regulatory protein PyrR; phosphoribosyltransferase complement(2649686..2650192) Acidithiobacillus ferrooxidans ATCC 53993 6878666 YP_002221069.1 CDS Lferr_2668 NC_011206.1 2650189 2650620 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: ngo:NGO0568 Holliday junction resolvase-like protein; Holliday junction resolvase YqgF complement(2650189..2650620) Acidithiobacillus ferrooxidans ATCC 53993 6878667 YP_002221070.1 CDS Lferr_2669 NC_011206.1 2650613 2651170 R PFAM: protein of unknown function DUF179; KEGG: mca:MCA2336 hypothetical protein; hypothetical protein complement(2650613..2651170) Acidithiobacillus ferrooxidans ATCC 53993 6878668 YP_002221071.1 CDS Lferr_2670 NC_011206.1 2651240 2652178 R KEGG: cbd:COXBU7E912_0106 glutathione synthase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; glutathione synthetase complement(2651240..2652178) Acidithiobacillus ferrooxidans ATCC 53993 6878669 YP_002221072.1 CDS Lferr_2671 NC_011206.1 2652175 2653485 R TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: tbd:Tbd_2408 glutamate--cysteine ligase GshA; glutamate/cysteine ligase complement(2652175..2653485) Acidithiobacillus ferrooxidans ATCC 53993 6878670 YP_002221073.1 CDS Lferr_2672 NC_011206.1 2653495 2654655 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(2653495..2654655) Acidithiobacillus ferrooxidans ATCC 53993 6878671 YP_002221074.1 CDS Lferr_2673 NC_011206.1 2654848 2655222 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azo:azo2758 hypothetical protein; iron-sulfur cluster assembly accessory protein complement(2654848..2655222) Acidithiobacillus ferrooxidans ATCC 53993 6878672 YP_002221075.1 CDS Lferr_2674 NC_011206.1 2655352 2658303 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; E3 binding domain protein; KEGG: tbd:Tbd_0652 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase E3 component; hypothetical protein complement(2655352..2658303) Acidithiobacillus ferrooxidans ATCC 53993 6878673 YP_002221076.1 CDS Lferr_2675 NC_011206.1 2658359 2659339 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: tbd:Tbd_0654 pyruvate dehydrogenase E1 beta subunit; transketolase central region complement(2658359..2659339) Acidithiobacillus ferrooxidans ATCC 53993 6878674 YP_002221077.1 CDS Lferr_2676 NC_011206.1 2659332 2660315 R KEGG: tbd:Tbd_0655 dehydrogenase complex, E1 component, alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha complement(2659332..2660315) Acidithiobacillus ferrooxidans ATCC 53993 6878675 YP_002221078.1 CDS Lferr_2677 NC_011206.1 2660704 2660982 R KEGG: mag:amb4299 hypothetical protein; hypothetical protein complement(2660704..2660982) Acidithiobacillus ferrooxidans ATCC 53993 6878676 YP_002221079.1 CDS Lferr_2678 NC_011206.1 2661052 2661396 R KEGG: rso:RSc1969 probable transmembrane protein; hypothetical protein complement(2661052..2661396) Acidithiobacillus ferrooxidans ATCC 53993 6878677 YP_002221080.1 CDS Lferr_2679 NC_011206.1 2661661 2662695 R KEGG: hch:HCH_06245 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase complement(2661661..2662695) Acidithiobacillus ferrooxidans ATCC 53993 6878678 YP_002221081.1 CDS Lferr_2680 NC_011206.1 2662779 2663165 R PFAM: ribosomal protein S9; KEGG: spe:Spro_4348 ribosomal protein S9; 30S ribosomal protein S9 complement(2662779..2663165) Acidithiobacillus ferrooxidans ATCC 53993 6878679 YP_002221082.1 CDS rplM NC_011206.1 2663178 2663606 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2663178..2663606) Acidithiobacillus ferrooxidans ATCC 53993 6878680 YP_002221083.1 CDS Lferr_2682 NC_011206.1 2663667 2664161 D hypothetical protein 2663667..2664161 Acidithiobacillus ferrooxidans ATCC 53993 6878681 YP_002221084.1 CDS Lferr_2683 NC_011206.1 2664201 2664635 D hypothetical protein 2664201..2664635 Acidithiobacillus ferrooxidans ATCC 53993 6878682 YP_002221085.1 CDS Lferr_2684 NC_011206.1 2665027 2665239 R KEGG: dsh:Dshi_2965 hypothetical protein; hypothetical protein complement(2665027..2665239) Acidithiobacillus ferrooxidans ATCC 53993 6878683 YP_002221086.1 CDS Lferr_2686 NC_011206.1 2671420 2672637 R TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; KEGG: cbd:COXBU7E912_1919 tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase complement(2671420..2672637) Acidithiobacillus ferrooxidans ATCC 53993 6878690 YP_002221087.1 CDS Lferr_2687 NC_011206.1 2672743 2675034 R KEGG: mse:Msed_0505 plasma-membrane proton-efflux P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; HAD superfamily P-type ATPase complement(2672743..2675034) Acidithiobacillus ferrooxidans ATCC 53993 6878691 YP_002221088.1 CDS Lferr_2688 NC_011206.1 2675275 2675658 D KEGG: mfa:Mfla_0594 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase 2675275..2675658 Acidithiobacillus ferrooxidans ATCC 53993 6878692 YP_002221089.1 CDS Lferr_2689 NC_011206.1 2675707 2676900 D PFAM: major facilitator superfamily MFS_1; KEGG: acr:Acry_0722 major facilitator superfamily MFS_1; major facilitator superfamily protein 2675707..2676900 Acidithiobacillus ferrooxidans ATCC 53993 6878693 YP_002221090.1 CDS engB NC_011206.1 2677059 2677745 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 2677059..2677745 Acidithiobacillus ferrooxidans ATCC 53993 6878694 YP_002221091.1 CDS Lferr_2691 NC_011206.1 2677811 2679073 D PFAM: TrkA-N domain protein; Ion transport protein; Ion transport 2 domain protein; KEGG: acr:Acry_0391 TrkA-N domain protein; voltage-gated potassium channel 2677811..2679073 Acidithiobacillus ferrooxidans ATCC 53993 6878695 YP_002221092.1 CDS Lferr_2692 NC_011206.1 2679076 2681775 R KEGG: aeh:Mlg_2860 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(2679076..2681775) Acidithiobacillus ferrooxidans ATCC 53993 6878696 YP_002221093.1 CDS Lferr_2693 NC_011206.1 2681845 2682564 D PFAM: conserved hypothetical protein; KEGG: aeh:Mlg_2861 conserved hypothetical protein 730; hypothetical protein 2681845..2682564 Acidithiobacillus ferrooxidans ATCC 53993 6878697 YP_002221094.1 CDS Lferr_2694 NC_011206.1 2682585 2682920 D KEGG: azo:azo3602 conserved hypothetical secreted protein; hypothetical protein 2682585..2682920 Acidithiobacillus ferrooxidans ATCC 53993 6878698 YP_002221095.1 CDS Lferr_2695 NC_011206.1 2682963 2683895 D KEGG: nmu:Nmul_A0565 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase; homoserine kinase 2682963..2683895 Acidithiobacillus ferrooxidans ATCC 53993 6878699 YP_002221096.1 CDS Lferr_2696 NC_011206.1 2683934 2684257 R hypothetical protein complement(2683934..2684257) Acidithiobacillus ferrooxidans ATCC 53993 6878700 YP_002221097.1 CDS Lferr_2697 NC_011206.1 2684460 2685062 D KEGG: mag:amb1922 hypothetical protein; hypothetical protein 2684460..2685062 Acidithiobacillus ferrooxidans ATCC 53993 6878701 YP_002221098.1 CDS Lferr_2698 NC_011206.1 2685073 2685480 R KEGG: dar:Daro_0466 competence protein ComEA helix-hairpin-helix region; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; competence protein ComEA complement(2685073..2685480) Acidithiobacillus ferrooxidans ATCC 53993 6878702 YP_002221099.1 CDS Lferr_2699 NC_011206.1 2685499 2687628 R PFAM: UvrD/REP helicase; KEGG: aha:AHA_0220 DNA helicase II; UvrD/REP helicase complement(2685499..2687628) Acidithiobacillus ferrooxidans ATCC 53993 6878703 YP_002221100.1 CDS Lferr_2700 NC_011206.1 2687745 2688677 D PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: aeh:Mlg_2130 heat shock protein DnaJ domain protein; chaperone DnaJ domain-containing protein 2687745..2688677 Acidithiobacillus ferrooxidans ATCC 53993 6878704 YP_002221101.1 CDS Lferr_2701 NC_011206.1 2688702 2688998 D KEGG: noc:Noc_1383 transcriptional regulator, MerR family; merR family transcriptional regulator 2688702..2688998 Acidithiobacillus ferrooxidans ATCC 53993 6878705 YP_002221102.1 CDS Lferr_2702 NC_011206.1 2688995 2689663 D PFAM: phosphoribosyltransferase; KEGG: nmu:Nmul_A0900 phosphoribosyltransferase; phosphoribosyltransferase 2688995..2689663 Acidithiobacillus ferrooxidans ATCC 53993 6878706 YP_002221103.1 CDS Lferr_2703 NC_011206.1 2689667 2691397 D PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: mca:MCA1213 hypothetical protein; PHP domain-containing protein 2689667..2691397 Acidithiobacillus ferrooxidans ATCC 53993 6878707 YP_002221104.1 CDS Lferr_2705 NC_011206.1 2692440 2693222 D PFAM: cytochrome c class I; KEGG: tbd:Tbd_0187 cytochrome c oxidase; cytochrome c class I 2692440..2693222 Acidithiobacillus ferrooxidans ATCC 53993 6878709 YP_002221105.1 CDS Lferr_2706 NC_011206.1 2693215 2694006 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: maq:Maqu_2497 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2693215..2694006 Acidithiobacillus ferrooxidans ATCC 53993 6878710 YP_002221106.1 CDS Lferr_2707 NC_011206.1 2694105 2694725 D KEGG: tbd:Tbd_1833 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 2694105..2694725 Acidithiobacillus ferrooxidans ATCC 53993 6878711 YP_002221107.1 CDS Lferr_2708 NC_011206.1 2694753 2695961 D PFAM: Cytochrome b/b6 domain; KEGG: noc:Noc_0298 cytochrome b/b6-like; cytochrome b/b6 domain-containing protein 2694753..2695961 Acidithiobacillus ferrooxidans ATCC 53993 6878712 YP_002221108.1 CDS Lferr_2709 NC_011206.1 2695958 2696686 D PFAM: cytochrome c1; KEGG: xom:XOO_2600 ubiquinol cytochrome c oxidoreductase; cytochrome c1 2695958..2696686 Acidithiobacillus ferrooxidans ATCC 53993 6878713 YP_002221109.1 CDS Lferr_2710 NC_011206.1 2697239 2699083 D PFAM: ResB family protein; KEGG: tcx:Tcr_0048 ResB-like; ResB family protein 2697239..2699083 Acidithiobacillus ferrooxidans ATCC 53993 6878714 YP_002221110.1 CDS Lferr_2711 NC_011206.1 2699076 2700263 D TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: tcx:Tcr_0049 cytochrome c assembly protein; cytochrome c-type biogenesis protein CcsB 2699076..2700263 Acidithiobacillus ferrooxidans ATCC 53993 6878715 YP_002221111.1 CDS Lferr_2712 NC_011206.1 2700443 2700808 D KEGG: aae:aq_401 hypothetical protein; hypothetical protein 2700443..2700808 Acidithiobacillus ferrooxidans ATCC 53993 6878716 YP_002221112.1 CDS Lferr_2713 NC_011206.1 2702314 2702799 R KEGG: aae:aq_2087 putative protein; hypothetical protein complement(2702314..2702799) Acidithiobacillus ferrooxidans ATCC 53993 6878717 YP_002221113.1 CDS Lferr_2714 NC_011206.1 2703374 2703760 D KEGG: mag:amb1815 hypothetical protein; hypothetical protein 2703374..2703760 Acidithiobacillus ferrooxidans ATCC 53993 6878718 YP_002221114.1 CDS Lferr_2715 NC_011206.1 2703804 2704034 D PFAM: SirA family protein; KEGG: mag:amb1816 predicted redox protein, regulator of disulfide bond formation; SirA family protein 2703804..2704034 Acidithiobacillus ferrooxidans ATCC 53993 6878719 YP_002221115.1 CDS Lferr_2716 NC_011206.1 2704077 2705216 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mag:amb1817 uncharacterized NAD(FAD)-dependent dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2704077..2705216 Acidithiobacillus ferrooxidans ATCC 53993 6878720 YP_002221116.1 CDS Lferr_2717 NC_011206.1 2705229 2705855 D KEGG: mag:amb1818 hypothetical protein; hypothetical protein 2705229..2705855 Acidithiobacillus ferrooxidans ATCC 53993 6878721 YP_002221117.1 CDS Lferr_2718 NC_011206.1 2705982 2706260 D hypothetical protein 2705982..2706260 Acidithiobacillus ferrooxidans ATCC 53993 6878722 YP_002221118.1 CDS Lferr_2719 NC_011206.1 2706558 2706872 D KEGG: tcx:Tcr_0831 hypothetical protein; hypothetical protein 2706558..2706872 Acidithiobacillus ferrooxidans ATCC 53993 6878723 YP_002221119.1 CDS Lferr_2720 NC_011206.1 2707224 2708990 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: noc:Noc_1305 sulphite reductase (NADPH) flavoprotein, alpha chain; flavodoxin/nitric oxide synthase 2707224..2708990 Acidithiobacillus ferrooxidans ATCC 53993 6878724 YP_002221120.1 CDS Lferr_2721 NC_011206.1 2708980 2710671 D PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mxa:MXAN_2334 sulfite reductase (NADPH) hemoprotein, beta-component; sulfite reductase 2708980..2710671 Acidithiobacillus ferrooxidans ATCC 53993 6878725 YP_002221121.1 CDS Lferr_2722 NC_011206.1 2710679 2711416 D KEGG: noc:Noc_2290 phosphoadenosine phosphosulfate reductase; TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase; adenylylsulfate reductase 2710679..2711416 Acidithiobacillus ferrooxidans ATCC 53993 6878726 YP_002221122.1 CDS Lferr_2723 NC_011206.1 2711413 2712351 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2711413..2712351 Acidithiobacillus ferrooxidans ATCC 53993 6878727 YP_002221123.1 CDS Lferr_2724 NC_011206.1 2712351 2713703 D KEGG: har:HEAR2396 ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase); TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase large subunit 2712351..2713703 Acidithiobacillus ferrooxidans ATCC 53993 6878728 YP_002221124.1 CDS Lferr_2725 NC_011206.1 2713809 2714630 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: hau:Haur_1744 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 2713809..2714630 Acidithiobacillus ferrooxidans ATCC 53993 6878729 YP_002221125.1 CDS Lferr_2726 NC_011206.1 2714627 2714980 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: aav:Aave_3165 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2714627..2714980 Acidithiobacillus ferrooxidans ATCC 53993 6878730 YP_002221126.1 CDS Lferr_2727 NC_011206.1 2715010 2715516 D KEGG: syg:sync_0363 predicted redox protein; hypothetical protein 2715010..2715516 Acidithiobacillus ferrooxidans ATCC 53993 6878731 YP_002221127.1 CDS Lferr_2728 NC_011206.1 2715535 2716959 R PFAM: Chloride channel core; KEGG: rha:RHA1_ro05905 chloride channel transporter; chloride channel core protein complement(2715535..2716959) Acidithiobacillus ferrooxidans ATCC 53993 6878732 YP_002221128.1 CDS Lferr_2729 NC_011206.1 2717413 2717661 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ppf:Pput_4890 twin argininte translocase protein A; twin-arginine translocation protein, TatA/E family subunit complement(2717413..2717661) Acidithiobacillus ferrooxidans ATCC 53993 6878733 YP_002221129.1 CDS Lferr_2730 NC_011206.1 2718098 2718325 D hypothetical protein 2718098..2718325 Acidithiobacillus ferrooxidans ATCC 53993 6878734 YP_002221130.1 CDS Lferr_2731 NC_011206.1 2718386 2719195 R KEGG: pin:Ping_1106 Sel1 domain and tetratricopeptide repeat-containing protein; hypothetical protein complement(2718386..2719195) Acidithiobacillus ferrooxidans ATCC 53993 6878735 YP_002221131.1 CDS Lferr_2732 NC_011206.1 2719562 2719726 D hypothetical protein 2719562..2719726 Acidithiobacillus ferrooxidans ATCC 53993 6878736 YP_002221132.1 CDS Lferr_2733 NC_011206.1 2720066 2720470 D hypothetical protein 2720066..2720470 Acidithiobacillus ferrooxidans ATCC 53993 6878737 YP_002221133.1 CDS Lferr_2734 NC_011206.1 2720673 2720822 R hypothetical protein complement(2720673..2720822) Acidithiobacillus ferrooxidans ATCC 53993 6878738 YP_002221134.1 CDS Lferr_2735 NC_011206.1 2721519 2722793 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nmu:Nmul_A0008 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2721519..2722793 Acidithiobacillus ferrooxidans ATCC 53993 6878739 YP_002221135.1 CDS Lferr_2736 NC_011206.1 2722793 2723368 D PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: mfa:Mfla_2202 response regulator receiver domain protein (CheY-like); two component Fis family transcriptional regulator 2722793..2723368 Acidithiobacillus ferrooxidans ATCC 53993 6878740 YP_002221136.1 CDS Lferr_2737 NC_011206.1 2723427 2724068 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: rso:RSc2814 hypothetical protein; 2OG-Fe(II) oxygenase complement(2723427..2724068) Acidithiobacillus ferrooxidans ATCC 53993 6878741 YP_002221137.1 CDS Lferr_2738 NC_011206.1 2724186 2724713 R hypothetical protein complement(2724186..2724713) Acidithiobacillus ferrooxidans ATCC 53993 6878742 YP_002221138.1 CDS Lferr_2739 NC_011206.1 2724827 2725267 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tbd:Tbd_0336 hypothetical protein; BadM/Rrf2 family transcriptional regulator complement(2724827..2725267) Acidithiobacillus ferrooxidans ATCC 53993 6878743 YP_002221139.1 CDS Lferr_2740 NC_011206.1 2725282 2726475 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: psp:PSPPH_4562 major facilitator family transporter; major facilitator superfamily protein complement(2725282..2726475) Acidithiobacillus ferrooxidans ATCC 53993 6878744 YP_002221140.1 CDS Lferr_2741 NC_011206.1 2726495 2727439 R TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: hch:HCH_00054 protoheme IX farnesyltransferase; protoheme IX farnesyltransferase complement(2726495..2727439) Acidithiobacillus ferrooxidans ATCC 53993 6878745 YP_002221141.1 CDS Lferr_2742 NC_011206.1 2727455 2728408 R KEGG: pto:PTO1300 cytochrome c oxidase assembly factor; hypothetical protein complement(2727455..2728408) Acidithiobacillus ferrooxidans ATCC 53993 6878746 YP_002221142.1 CDS Lferr_2743 NC_011206.1 2728701 2729264 R TIGRFAM: rusticyanin; PFAM: blue (type 1) copper domain protein; KEGG: tac:Ta1505 rusticyanin related protein; rusticyanin complement(2728701..2729264) Acidithiobacillus ferrooxidans ATCC 53993 6878747 YP_002221143.1 CDS Lferr_2744 NC_011206.1 2729393 2729533 R hypothetical protein complement(2729393..2729533) Acidithiobacillus ferrooxidans ATCC 53993 6878748 YP_002221144.1 CDS Lferr_2745 NC_011206.1 2729632 2729826 R hypothetical protein complement(2729632..2729826) Acidithiobacillus ferrooxidans ATCC 53993 6878749 YP_002221145.1 CDS Lferr_2746 NC_011206.1 2729867 2730421 R KEGG: cef:CE2085 putative cytochrome c oxidase subunit III; hypothetical protein complement(2729867..2730421) Acidithiobacillus ferrooxidans ATCC 53993 6878750 YP_002221146.1 CDS Lferr_2747 NC_011206.1 2730441 2732324 R PFAM: cytochrome c oxidase subunit I; KEGG: cya:CYA_1513 cytochrome c oxidase, subunit I; cytochrome-c oxidase complement(2730441..2732324) Acidithiobacillus ferrooxidans ATCC 53993 6878751 YP_002221147.1 CDS Lferr_2748 NC_011206.1 2732381 2733145 R PFAM: cytochrome c oxidase subunit II; KEGG: scl:sce7592 putative cytochrome-c oxidase; cytochrome c oxidase subunit II complement(2732381..2733145) Acidithiobacillus ferrooxidans ATCC 53993 6878752 YP_002221148.1 CDS Lferr_2749 NC_011206.1 2733160 2733711 R KEGG: hsl:OE2703F putative copper-containing oxidoreductase; hypothetical protein complement(2733160..2733711) Acidithiobacillus ferrooxidans ATCC 53993 6878753 YP_002221149.1 CDS Lferr_2750 NC_011206.1 2733813 2734505 R PFAM: cytochrome c class I; KEGG: bte:BTH_II1779 cytochrome c family protein; cytochrome c class I complement(2733813..2734505) Acidithiobacillus ferrooxidans ATCC 53993 6878754 YP_002221150.1 CDS Lferr_2751 NC_011206.1 2734517 2735974 R KEGG: bte:BTH_II1778 cytochrome c; cytochrome c complement(2734517..2735974) Acidithiobacillus ferrooxidans ATCC 53993 6878755 YP_002221151.1 CDS Lferr_2753 NC_011206.1 2737391 2738503 R hypothetical protein complement(2737391..2738503) Acidithiobacillus ferrooxidans ATCC 53993 6878757 YP_002221152.1 CDS Lferr_2754 NC_011206.1 2738646 2739548 R KEGG: acr:Acry_1563 cytochrome c-like protein; cytochrome c-like protein complement(2738646..2739548) Acidithiobacillus ferrooxidans ATCC 53993 6878758 YP_002221153.1 CDS Lferr_2755 NC_011206.1 2739618 2741507 R PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; KEGG: tbd:Tbd_1078 heat shock protein 90; heat shock protein Hsp90 complement(2739618..2741507) Acidithiobacillus ferrooxidans ATCC 53993 6878759 YP_002221154.1 CDS Lferr_2756 NC_011206.1 2741695 2742162 R KEGG: tcx:Tcr_1933 uncharacterized conserved coiled coil protein; hypothetical protein complement(2741695..2742162) Acidithiobacillus ferrooxidans ATCC 53993 6878760 YP_002221155.1 CDS Lferr_2757 NC_011206.1 2742201 2743196 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rca:Rcas_0709 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit complement(2742201..2743196) Acidithiobacillus ferrooxidans ATCC 53993 6878761 YP_002221156.1 CDS Lferr_2758 NC_011206.1 2743901 2744386 R PFAM: GCN5-related N-acetyltransferase; KEGG: ppd:Ppro_2351 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2743901..2744386) Acidithiobacillus ferrooxidans ATCC 53993 6878762 YP_002221157.1 CDS Lferr_2759 NC_011206.1 2744489 2744809 R catalyzes the second reaction in the pyochelin biosynthetic pathway, the conversion of isochorismate to salicylate and pyruvate.; isochorismate-pyruvate lyase complement(2744489..2744809) Acidithiobacillus ferrooxidans ATCC 53993 6878763 YP_002221158.1 CDS Lferr_2760 NC_011206.1 2744840 2745487 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_C7226 ABC multidrug efflux pump, ATPase subunit; ABC transporter-like protein complement(2744840..2745487) Acidithiobacillus ferrooxidans ATCC 53993 6878764 YP_002221159.1 CDS Lferr_2761 NC_011206.1 2745498 2746718 R KEGG: stp:Strop_0932 hypothetical protein; hypothetical protein complement(2745498..2746718) Acidithiobacillus ferrooxidans ATCC 53993 6878765 YP_002221160.1 CDS Lferr_2762 NC_011206.1 2746846 2747307 R PFAM: GCN5-related N-acetyltransferase; KEGG: gfo:GFO_0419 GNAT family acetyltransferase; N-acetyltransferase GCN5 complement(2746846..2747307) Acidithiobacillus ferrooxidans ATCC 53993 6878766 YP_002221161.1 CDS Lferr_2763 NC_011206.1 2747397 2748053 R PFAM: Negative transcriptional regulator; KEGG: hau:Haur_4597 FMN-binding negative transcriptional regulator; FMN-binding negative transcriptional regulator complement(2747397..2748053) Acidithiobacillus ferrooxidans ATCC 53993 6878767 YP_002221162.1 CDS Lferr_2764 NC_011206.1 2748067 2748714 R KEGG: rba:RB82 conserved hypothetical protein-putative cysteine protease; transglutaminase complement(2748067..2748714) Acidithiobacillus ferrooxidans ATCC 53993 6878768 YP_002221163.1 CDS Lferr_2765 NC_011206.1 2748725 2749210 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: jan:Jann_1696 cupin 2 protein; cupin complement(2748725..2749210) Acidithiobacillus ferrooxidans ATCC 53993 6878769 YP_002221164.1 CDS Lferr_2766 NC_011206.1 2749212 2749691 R KEGG: cvi:CV_1605 hypothetical protein; hypothetical protein complement(2749212..2749691) Acidithiobacillus ferrooxidans ATCC 53993 6878770 YP_002221165.1 CDS Lferr_2767 NC_011206.1 2749808 2750107 R KEGG: bam:Bamb_5132 short-chain dehydrogenase/reductase SDR; hypothetical protein complement(2749808..2750107) Acidithiobacillus ferrooxidans ATCC 53993 6878771 YP_002221166.1 CDS Lferr_2768 NC_011206.1 2750104 2750502 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spu:584307 hypothetical LOC584307; Glyoxalase/bleomycin resistance protein/dioxygenase complement(2750104..2750502) Acidithiobacillus ferrooxidans ATCC 53993 6878772 YP_002221167.1 CDS Lferr_2769 NC_011206.1 2750742 2751167 R KEGG: mar:MAE_06990 hypothetical protein; hypothetical protein complement(2750742..2751167) Acidithiobacillus ferrooxidans ATCC 53993 6878773 YP_002221168.1 CDS Lferr_2770 NC_011206.1 2751157 2751417 R KEGG: vei:Veis_0541 hypothetical protein; hypothetical protein complement(2751157..2751417) Acidithiobacillus ferrooxidans ATCC 53993 6878774 YP_002221169.1 CDS Lferr_2771 NC_011206.1 2751825 2752670 D KEGG: maq:Maqu_1264 hypothetical protein; hypothetical protein 2751825..2752670 Acidithiobacillus ferrooxidans ATCC 53993 6878775 YP_002221170.1 CDS Lferr_2772 NC_011206.1 2753140 2753454 R KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 complement(2753140..2753454) Acidithiobacillus ferrooxidans ATCC 53993 6878776 YP_002221171.1 CDS Lferr_2773 NC_011206.1 2753576 2754895 R KEGG: sma:SAV256 transposase; hypothetical protein complement(2753576..2754895) Acidithiobacillus ferrooxidans ATCC 53993 6878777 YP_002221172.1 CDS Lferr_2774 NC_011206.1 2755114 2755863 D KEGG: nha:Nham_0140 hypothetical protein; hypothetical protein 2755114..2755863 Acidithiobacillus ferrooxidans ATCC 53993 6878778 YP_002221173.1 CDS Lferr_2775 NC_011206.1 2755868 2756695 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B267 transposition helper protein; IstB domain-containing ATP-binding protein complement(2755868..2756695) Acidithiobacillus ferrooxidans ATCC 53993 6878779 YP_002221174.1 CDS Lferr_2776 NC_011206.1 2756692 2758176 R PFAM: Integrase catalytic region; KEGG: eba:p2A256 transposase; integrase catalytic subunit complement(2756692..2758176) Acidithiobacillus ferrooxidans ATCC 53993 6878780 YP_002221175.1 CDS Lferr_2777 NC_011206.1 2758359 2758643 D KEGG: nha:Nham_0140 hypothetical protein; hypothetical protein 2758359..2758643 Acidithiobacillus ferrooxidans ATCC 53993 6878781 YP_002221176.1 CDS Lferr_2778 NC_011206.1 2759004 2759261 D KEGG: ppf:Pput_1356 transposase, IS4 family protein; hypothetical protein 2759004..2759261 Acidithiobacillus ferrooxidans ATCC 53993 6878782 YP_002221177.1 CDS Lferr_2781 NC_011206.1 2760167 2761195 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcm:Bcenmc03_2913 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(2760167..2761195) Acidithiobacillus ferrooxidans ATCC 53993 6878784 YP_002221178.1 CDS Lferr_2785 NC_011206.1 2763314 2764231 R PFAM: restriction endonuclease; KEGG: mar:MAE_48320 Mrr restriction system protein; restriction endonuclease complement(2763314..2764231) Acidithiobacillus ferrooxidans ATCC 53993 6878788 YP_002221179.1 CDS Lferr_2786 NC_011206.1 2764448 2764630 D KEGG: bmu:Bmul_6239 integrase catalytic region; integrase catalytic subunit 2764448..2764630 Acidithiobacillus ferrooxidans ATCC 53993 6878789 YP_002221180.1 CDS Lferr_2787 NC_011206.1 2764687 2764959 D KEGG: eba:ebA3777 transposase; hypothetical protein 2764687..2764959 Acidithiobacillus ferrooxidans ATCC 53993 6878790 YP_002221181.1 CDS Lferr_2788 NC_011206.1 2765718 2767037 D KEGG: sma:SAV256 transposase; hypothetical protein 2765718..2767037 Acidithiobacillus ferrooxidans ATCC 53993 6878791 YP_002221182.1 CDS Lferr_2789 NC_011206.1 2767159 2767473 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 2767159..2767473 Acidithiobacillus ferrooxidans ATCC 53993 6878792 YP_002221183.1 CDS Lferr_2790 NC_011206.1 2767617 2768027 D hypothetical protein 2767617..2768027 Acidithiobacillus ferrooxidans ATCC 53993 6878793 YP_002221184.1 CDS Lferr_2791 NC_011206.1 2767974 2768837 R KEGG: maq:Maqu_4294 hypothetical protein; hypothetical protein complement(2767974..2768837) Acidithiobacillus ferrooxidans ATCC 53993 6878794 YP_002221185.1 CDS Lferr_2792 NC_011206.1 2769446 2772172 D PFAM: type III restriction protein res subunit; KEGG: tbd:Tbd_1492 type III restriction-modification enzyme helicase subunit; type III restriction protein res subunit 2769446..2772172 Acidithiobacillus ferrooxidans ATCC 53993 6878795 YP_002221186.1 CDS Lferr_2793 NC_011206.1 2772175 2774430 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tbd:Tbd_1491 adenine specific DNA-methyltransferase; DNA methylase N-4/N-6 domain-containing protein 2772175..2774430 Acidithiobacillus ferrooxidans ATCC 53993 6878796 YP_002221187.1 CDS Lferr_2794 NC_011206.1 2774483 2777167 D KEGG: ade:Adeh_3230 hypothetical protein; hypothetical protein 2774483..2777167 Acidithiobacillus ferrooxidans ATCC 53993 6878797 YP_002221188.1 CDS Lferr_2795 NC_011206.1 2777170 2778381 D PFAM: AAA-4 family protein; KEGG: plu:plu4904 hypothetical protein; transcriptional regulator 2777170..2778381 Acidithiobacillus ferrooxidans ATCC 53993 6878798 YP_002221189.1 CDS Lferr_2796 NC_011206.1 2778421 2779269 R hypothetical protein complement(2778421..2779269) Acidithiobacillus ferrooxidans ATCC 53993 6878799 YP_002221190.1 CDS Lferr_2797 NC_011206.1 2779425 2780744 D KEGG: sma:SAV256 transposase; hypothetical protein 2779425..2780744 Acidithiobacillus ferrooxidans ATCC 53993 6878800 YP_002221191.1 CDS Lferr_2798 NC_011206.1 2780866 2781180 D KEGG: fra:Francci3_2121 transposase, IS4; transposase, IS4 2780866..2781180 Acidithiobacillus ferrooxidans ATCC 53993 6878801 YP_002221192.1 CDS Lferr_2799 NC_011206.1 2781316 2782125 R KEGG: hch:HCH_07063 hypothetical protein; hypothetical protein complement(2781316..2782125) Acidithiobacillus ferrooxidans ATCC 53993 6878802 YP_002221193.1 CDS Lferr_2800 NC_011206.1 2782127 2783956 R KEGG: ava:Ava_3495 Tn7-like transposition protein D; Tn7-like transposition protein D complement(2782127..2783956) Acidithiobacillus ferrooxidans ATCC 53993 6878803 YP_002221194.1 CDS Lferr_2801 NC_011206.1 2783968 2785623 R KEGG: cth:Cthe_1115 Tn7-like transposition protein C; Tn7-like transposition protein C complement(2783968..2785623) Acidithiobacillus ferrooxidans ATCC 53993 6878804 YP_002221195.1 CDS Lferr_2802 NC_011206.1 2785607 2787772 R KEGG: cth:Cthe_1116 HMG-I and HMG-Y, DNA-binding; HMG-I and HMG-Y DNA-binding protein complement(2785607..2787772) Acidithiobacillus ferrooxidans ATCC 53993 6878805 YP_002221196.1 CDS Lferr_2803 NC_011206.1 2787769 2788635 R PFAM: TnsA endonuclease; KEGG: ava:Ava_3486 Tn7-like transposition protein A; TnsA endonuclease complement(2787769..2788635) Acidithiobacillus ferrooxidans ATCC 53993 6878806 YP_002221197.1 CDS Lferr_2804 NC_011206.1 2788779 2790614 R TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: cvi:CV_0677 D-fructose-6-phosphate amidotransferase; glucosamine/fructose-6-phosphate aminotransferase complement(2788779..2790614) Acidithiobacillus ferrooxidans ATCC 53993 6878807 YP_002221198.1 CDS Lferr_2805 NC_011206.1 2790660 2792027 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; KEGG: vch:VC2762 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; UDP-N-acetylglucosamine pyrophosphorylase complement(2790660..2792027) Acidithiobacillus ferrooxidans ATCC 53993 6878808 YP_002221199.1 CDS atpC NC_011206.1 2792156 2792581 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(2792156..2792581) Acidithiobacillus ferrooxidans ATCC 53993 6878809 YP_002221200.1 CDS Lferr_2807 NC_011206.1 2792585 2793994 R KEGG: noc:Noc_3074 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta complement(2792585..2793994) Acidithiobacillus ferrooxidans ATCC 53993 6878810 YP_002221201.1 CDS Lferr_2808 NC_011206.1 2794036 2794902 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(2794036..2794902) Acidithiobacillus ferrooxidans ATCC 53993 6878811 YP_002221202.1 CDS Lferr_2809 NC_011206.1 2794912 2796456 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2794912..2796456) Acidithiobacillus ferrooxidans ATCC 53993 6878812 YP_002221203.1 CDS Lferr_2810 NC_011206.1 2796473 2797012 R TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: cvi:CV_0669 ATP synthase F1, delta subunit; ATP synthase F1 subunit delta complement(2796473..2797012) Acidithiobacillus ferrooxidans ATCC 53993 6878813 YP_002221204.1 CDS Lferr_2811 NC_011206.1 2797023 2797502 R TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: tcx:Tcr_2169 ATP synthase F0, B subunit; ATP synthase F0 subunit B complement(2797023..2797502) Acidithiobacillus ferrooxidans ATCC 53993 6878814 YP_002221205.1 CDS Lferr_2812 NC_011206.1 2797545 2797799 R TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: tcx:Tcr_2170 ATP synthase F0, C subunit; ATP synthase F0 subunit C complement(2797545..2797799) Acidithiobacillus ferrooxidans ATCC 53993 6878815 YP_002221206.1 CDS Lferr_2813 NC_011206.1 2797841 2798590 R TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: noc:Noc_3080 F0F1 ATP synthase subunit A; F0 ATP synthase subunit A complement(2797841..2798590) Acidithiobacillus ferrooxidans ATCC 53993 6878816 YP_002221207.1 CDS Lferr_2814 NC_011206.1 2798593 2798964 R hypothetical protein complement(2798593..2798964) Acidithiobacillus ferrooxidans ATCC 53993 6878817 YP_002221208.1 CDS Lferr_2815 NC_011206.1 2799019 2799903 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dar:Daro_4106 ParB-like partition protein; parB-like partition protein complement(2799019..2799903) Acidithiobacillus ferrooxidans ATCC 53993 6878818 YP_002221209.1 CDS Lferr_2816 NC_011206.1 2799900 2800682 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mfa:Mfla_2753 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(2799900..2800682) Acidithiobacillus ferrooxidans ATCC 53993 6878819 YP_002221210.1 CDS Lferr_2817 NC_011206.1 2800729 2801394 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: mfa:Mfla_2754 methyltransferase GidB; methyltransferase GidB complement(2800729..2801394) Acidithiobacillus ferrooxidans ATCC 53993 6878820 YP_002221211.1 CDS Lferr_2818 NC_011206.1 2801399 2803273 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(2801399..2803273) Acidithiobacillus ferrooxidans ATCC 53993 6878821 YP_002221212.1 CDS Lferr_2819 NC_011206.1 2803292 2803741 R KEGG: bbr:BB3302 lipoprotein; lipoprotein complement(2803292..2803741) Acidithiobacillus ferrooxidans ATCC 53993 6878822 YP_002221213.1 CDS Lferr_2820 NC_011206.1 2803729 2804271 R PFAM: Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: aeh:Mlg_0662 methyltransferase type 12; type 12 methyltransferase complement(2803729..2804271) Acidithiobacillus ferrooxidans ATCC 53993 6878823 YP_002221214.1 CDS Lferr_2821 NC_011206.1 2804278 2804820 R TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: acr:Acry_2805 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B complement(2804278..2804820) Acidithiobacillus ferrooxidans ATCC 53993 6878824 YP_002221215.1 CDS Lferr_2822 NC_011206.1 2804969 2805904 D PFAM: Mg2 transporter protein CorA family protein; KEGG: dge:Dgeo_2211 Mg2+ transporter protein, CorA-like protein; Mg2 transporter protein CorA family protein 2804969..2805904 Acidithiobacillus ferrooxidans ATCC 53993 6878825 YP_002221216.1 CDS Lferr_2823 NC_011206.1 2805935 2806876 D PFAM: Mg2 transporter protein CorA family protein; KEGG: gtn:GTNG_1415 magnesium and cobalt transport protein; Mg2 transporter protein CorA family protein 2805935..2806876 Acidithiobacillus ferrooxidans ATCC 53993 6878826 YP_002221217.1 CDS Lferr_2824 NC_011206.1 2806884 2807783 D KEGG: fjo:Fjoh_0242 Mg2+ transporter protein, CorA family protein; hypothetical protein 2806884..2807783 Acidithiobacillus ferrooxidans ATCC 53993 6878827 YP_002221218.1 CDS Lferr_2825 NC_011206.1 2807799 2808713 D PFAM: Mg2 transporter protein CorA family protein; KEGG: drm:Dred_2662 Mg2+ transporter protein, CorA family protein; Mg2 transporter protein CorA family protein 2807799..2808713 Acidithiobacillus ferrooxidans ATCC 53993 6878828 YP_002221219.1 CDS Lferr_2826 NC_011206.1 2808794 2809864 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: tcx:Tcr_1009 ADP-ribosylation/crystallin J1; ADP-ribosylation/Crystallin J1 complement(2808794..2809864) Acidithiobacillus ferrooxidans ATCC 53993 6878829 YP_002221220.1 CDS Lferr_2827 NC_011206.1 2810255 2810707 D TIGRFAM: flavoprotein WrbA; KEGG: aeh:Mlg_1277 flavoprotein WrbA; flavoprotein WrbA 2810255..2810707 Acidithiobacillus ferrooxidans ATCC 53993 6878830 YP_002221221.1 CDS Lferr_2828 NC_011206.1 2810711 2811583 D PFAM: Pirin domain protein; KEGG: rfr:Rfer_0805 pirin-like; Pirin domain-containing protein 2810711..2811583 Acidithiobacillus ferrooxidans ATCC 53993 6878831 YP_002221222.1 CDS Lferr_2829 NC_011206.1 2811641 2811793 D hypothetical protein 2811641..2811793 Acidithiobacillus ferrooxidans ATCC 53993 6878832 YP_002221223.1 CDS Lferr_2830 NC_011206.1 2811790 2812467 D KEGG: mca:MCA0312 hypothetical protein; hypothetical protein 2811790..2812467 Acidithiobacillus ferrooxidans ATCC 53993 6878833 YP_002221224.1 CDS Lferr_2832 NC_011206.1 2813217 2815523 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: acr:Acry_3609 TonB-dependent receptor; TonB-dependent receptor 2813217..2815523 Acidithiobacillus ferrooxidans ATCC 53993 6878835 YP_002221225.1 CDS Lferr_2833 NC_011206.1 2815609 2818404 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: sus:Acid_4558 40-residue YVTN family beta-propeller repeat protein; SMP-30/gluconolaconase/LRE domain-containing protein 2815609..2818404 Acidithiobacillus ferrooxidans ATCC 53993 6878836 YP_002221226.1 CDS Lferr_2834 NC_011206.1 2818551 2818766 R KEGG: reh:H16_A2469 phage integrase family protein; phage integrase family protein complement(2818551..2818766) Acidithiobacillus ferrooxidans ATCC 53993 6878837 YP_002221227.1 CDS Lferr_2835 NC_011206.1 2819331 2819921 R hypothetical protein complement(2819331..2819921) Acidithiobacillus ferrooxidans ATCC 53993 6878839 YP_002221228.1 CDS Lferr_2836 NC_011206.1 2820016 2820792 R TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: mgm:Mmc1_3305 ABC-2 type transporter, NodJ family; NodJ family ABC transporter complement(2820016..2820792) Acidithiobacillus ferrooxidans ATCC 53993 6878840 YP_002221229.1 CDS Lferr_2837 NC_011206.1 2820792 2821721 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo0360 ABC transporter ATP-binding protein NodI; ABC transporter-like protein complement(2820792..2821721) Acidithiobacillus ferrooxidans ATCC 53993 6878841 YP_002221230.1 CDS Lferr_2838 NC_011206.1 2821702 2822430 R KEGG: cbs:COXBURSA331_A1962 hypothetical protein; hypothetical protein complement(2821702..2822430) Acidithiobacillus ferrooxidans ATCC 53993 6878842 YP_002221231.1 CDS Lferr_2839 NC_011206.1 2822430 2822747 R KEGG: bpd:BURPS668_0436 ferredoxin, putative; ferredoxin complement(2822430..2822747) Acidithiobacillus ferrooxidans ATCC 53993 6878843 YP_002221232.1 CDS Lferr_2840 NC_011206.1 2822820 2823446 D KEGG: azo:azo2762 ubiquinone biosynthesis protein; ubiquinone biosynthesis protein 2822820..2823446 Acidithiobacillus ferrooxidans ATCC 53993 6878844 YP_002221233.1 CDS Lferr_2841 NC_011206.1 2823451 2823939 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tbd:Tbd_0336 hypothetical protein; BadM/Rrf2 family transcriptional regulator complement(2823451..2823939) Acidithiobacillus ferrooxidans ATCC 53993 6878845 YP_002221234.1 CDS Lferr_2842 NC_011206.1 2823950 2824375 R PFAM: OsmC family protein; KEGG: cvi:CV_2756 hypothetical protein; OsmC family protein complement(2823950..2824375) Acidithiobacillus ferrooxidans ATCC 53993 6878846 YP_002221235.1 CDS Lferr_2843 NC_011206.1 2824446 2825237 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: bmu:Bmul_2863 indole-3-glycerol-phosphate synthase; Indole-3-glycerol phosphate synthase complement(2824446..2825237) Acidithiobacillus ferrooxidans ATCC 53993 6878847 YP_002221236.1 CDS trpD NC_011206.1 2825241 2826257 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(2825241..2826257) Acidithiobacillus ferrooxidans ATCC 53993 6878848 YP_002221237.1 CDS Lferr_2845 NC_011206.1 2826254 2826826 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: neu:NE0014 panthranilate synthase component II (glutamine amido-transferase) protein; glutamine amidotransferase of anthranilate synthase complement(2826254..2826826) Acidithiobacillus ferrooxidans ATCC 53993 6878849 YP_002221238.1 CDS Lferr_2846 NC_011206.1 2826810 2828327 R KEGG: mca:MCA2584 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; anthranilate synthase component I complement(2826810..2828327) Acidithiobacillus ferrooxidans ATCC 53993 6878850 YP_002221239.1 CDS Lferr_2847 NC_011206.1 2828438 2829121 R TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tbd:Tbd_2229 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(2828438..2829121) Acidithiobacillus ferrooxidans ATCC 53993 6878851 YP_002221240.1 CDS Lferr_2848 NC_011206.1 2829125 2829787 R PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: har:HEAR0202 ribulose-phosphate 3-epimerase (pentose-5-phosphate 3-epimerase) (PPE) (R5P3E); ribulose-phosphate 3-epimerase complement(2829125..2829787) Acidithiobacillus ferrooxidans ATCC 53993 6878852 YP_002221241.1 CDS Lferr_2849 NC_011206.1 2829852 2830922 R KEGG: noc:Noc_2804 fructose-1,6-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase complement(2829852..2830922) Acidithiobacillus ferrooxidans ATCC 53993 6878853 YP_002221242.1 CDS Lferr_2850 NC_011206.1 2831030 2832469 R KEGG: tbd:Tbd_0162 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(2831030..2832469) Acidithiobacillus ferrooxidans ATCC 53993 6878854 YP_002221243.1 CDS Lferr_2851 NC_011206.1 2832466 2833671 R PFAM: phosphoglycerate kinase; KEGG: abo:ABO_2613 phosphoglycerate kinase; phosphoglycerate kinase complement(2832466..2833671) Acidithiobacillus ferrooxidans ATCC 53993 6878855 YP_002221244.1 CDS Lferr_2852 NC_011206.1 2833686 2834702 R KEGG: bpt:Bpet3623 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(2833686..2834702) Acidithiobacillus ferrooxidans ATCC 53993 6878856 YP_002221245.1 CDS Lferr_2853 NC_011206.1 2834737 2836734 R KEGG: mca:MCA3040 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; transketolase complement(2834737..2836734) Acidithiobacillus ferrooxidans ATCC 53993 6878857 YP_002221246.1 CDS glpX NC_011206.1 2836760 2837704 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(2836760..2837704) Acidithiobacillus ferrooxidans ATCC 53993 6878858 YP_002221247.1 CDS Lferr_2855 NC_011206.1 2837763 2838590 R PFAM: inositol monophosphatase; KEGG: mca:MCA2471 inositol monophosphatase family protein; inositol-phosphate phosphatase complement(2837763..2838590) Acidithiobacillus ferrooxidans ATCC 53993 6878859 YP_002221248.1 CDS Lferr_2856 NC_011206.1 2838614 2839051 R KEGG: tbd:Tbd_2607 hypothetical protein; hypothetical protein complement(2838614..2839051) Acidithiobacillus ferrooxidans ATCC 53993 6878860 YP_002221249.1 CDS Lferr_2857 NC_011206.1 2839119 2839844 D PFAM: protein of unknown function DUF558; KEGG: aeh:Mlg_0361 protein of unknown function DUF558; hypothetical protein 2839119..2839844 Acidithiobacillus ferrooxidans ATCC 53993 6878861 YP_002221250.1 CDS Lferr_2858 NC_011206.1 2839933 2840883 D KEGG: aeh:Mlg_0854 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 2839933..2840883 Acidithiobacillus ferrooxidans ATCC 53993 6878862 YP_002221251.1 CDS Lferr_2859 NC_011206.1 2840922 2842460 R PFAM: protein of unknown function DUF195; KEGG: dau:Daud_1920 protein of unknown function DUF195; hypothetical protein complement(2840922..2842460) Acidithiobacillus ferrooxidans ATCC 53993 6878863 YP_002221252.1 CDS Lferr_2860 NC_011206.1 2842489 2842944 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: cte:CT1243 large conductance mechanosensitive channel; large conductance mechanosensitive channel protein complement(2842489..2842944) Acidithiobacillus ferrooxidans ATCC 53993 6878864 YP_002221253.1 CDS Lferr_2861 NC_011206.1 2843055 2843567 R hypothetical protein complement(2843055..2843567) Acidithiobacillus ferrooxidans ATCC 53993 6878865 YP_002221254.1 CDS Lferr_2862 NC_011206.1 2843601 2846711 R PFAM: acriflavin resistance protein; KEGG: gvi:glr4028 probable RND efflux transporter; acriflavin resistance protein complement(2843601..2846711) Acidithiobacillus ferrooxidans ATCC 53993 6878866 YP_002221255.1 CDS Lferr_2863 NC_011206.1 2846708 2847838 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_2038 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2846708..2847838) Acidithiobacillus ferrooxidans ATCC 53993 6878867 YP_002221256.1 CDS Lferr_2864 NC_011206.1 2847835 2849265 R PFAM: outer membrane efflux protein; KEGG: ade:Adeh_2020 outer membrane efflux protein; outer membrane efflux protein complement(2847835..2849265) Acidithiobacillus ferrooxidans ATCC 53993 6878868 YP_002221257.1 CDS Lferr_2865 NC_011206.1 2849915 2850358 R PFAM: protein of unknown function DUF188; KEGG: bpt:Bpet3884 hypothetical protein; hypothetical protein complement(2849915..2850358) Acidithiobacillus ferrooxidans ATCC 53993 6878869 YP_002221258.1 CDS Lferr_2866 NC_011206.1 2850532 2850855 D TIGRFAM: prevent-host-death family protein; KEGG: eba:ebB204 conserved hypothetical protein, antitoxin of prevent-host-death family; prevent-host-death family protein 2850532..2850855 Acidithiobacillus ferrooxidans ATCC 53993 6878870 YP_002221259.1 CDS Lferr_2867 NC_011206.1 2850862 2851293 D KEGG: eba:ebA5967 nucleic acid-binding protein, contains PIN domain; nucleic acid-binding protein 2850862..2851293 Acidithiobacillus ferrooxidans ATCC 53993 6878871 YP_002221260.1 CDS Lferr_2868 NC_011206.1 2851590 2853125 D KEGG: mpn:MPN633 hypothetical protein; hypothetical protein 2851590..2853125 Acidithiobacillus ferrooxidans ATCC 53993 6878872 YP_002221261.1 CDS Lferr_2870 NC_011206.1 2854478 2854696 R KEGG: mca:MCA2829 hypothetical protein; hypothetical protein complement(2854478..2854696) Acidithiobacillus ferrooxidans ATCC 53993 6878874 YP_002221262.1 CDS Lferr_2871 NC_011206.1 2855210 2855764 D KEGG: pin:Ping_0892 envelope stress induced periplasmic protein, Spy-related; hypothetical protein 2855210..2855764 Acidithiobacillus ferrooxidans ATCC 53993 6878875 YP_002221263.1 CDS Lferr_2872 NC_011206.1 2855765 2856502 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo1709 osmolarity response regulator; winged helix family two component transcriptional regulator 2855765..2856502 Acidithiobacillus ferrooxidans ATCC 53993 6878876 YP_002221264.1 CDS Lferr_2873 NC_011206.1 2856508 2857770 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mfa:Mfla_0653 histidine kinase; integral membrane sensor signal transduction histidine kinase 2856508..2857770 Acidithiobacillus ferrooxidans ATCC 53993 6878877 YP_002221265.1 CDS Lferr_2874 NC_011206.1 2857782 2858108 R hypothetical protein complement(2857782..2858108) Acidithiobacillus ferrooxidans ATCC 53993 6878878 YP_002221266.1 CDS Lferr_2875 NC_011206.1 2858252 2859640 D TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: noc:Noc_0501 argininosuccinate lyase; argininosuccinate lyase 2858252..2859640 Acidithiobacillus ferrooxidans ATCC 53993 6878879 YP_002221267.1 CDS Lferr_2876 NC_011206.1 2859637 2859822 D KEGG: reu:Reut_A1107 hypothetical protein; hypothetical protein 2859637..2859822 Acidithiobacillus ferrooxidans ATCC 53993 6878880 YP_002221268.1 CDS Lferr_2877 NC_011206.1 2859819 2861078 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: hch:HCH_00297 diaminopimelate decarboxylase; diaminopimelate decarboxylase 2859819..2861078 Acidithiobacillus ferrooxidans ATCC 53993 6878881 YP_002221269.1 CDS Lferr_2878 NC_011206.1 2861220 2861771 D KEGG: aae:aq_1250 hypothetical protein; phospholipid-binding protein-like protein 2861220..2861771 Acidithiobacillus ferrooxidans ATCC 53993 6878882 YP_002221270.1 CDS Lferr_2879 NC_011206.1 2861803 2862279 D TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: tbd:Tbd_1380 peptidase M52, hydrogen uptake protein; hydrogenase maturation protease 2861803..2862279 Acidithiobacillus ferrooxidans ATCC 53993 6878883 YP_002221271.1 CDS Lferr_2880 NC_011206.1 2862266 2862682 D PFAM: HupH hydrogenase expression protein; KEGG: tbd:Tbd_1379 hypothetical protein; HupH hydrogenase expression protein 2862266..2862682 Acidithiobacillus ferrooxidans ATCC 53993 6878884 YP_002221272.1 CDS Lferr_2881 NC_011206.1 2862682 2863782 D KEGG: tbd:Tbd_1378 Ni-Fe hydrogenase, small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA 2862682..2863782 Acidithiobacillus ferrooxidans ATCC 53993 6878885 YP_002221273.1 CDS Lferr_2882 NC_011206.1 2863772 2864437 D KEGG: tbd:Tbd_1377 hypothetical protein; hypothetical protein 2863772..2864437 Acidithiobacillus ferrooxidans ATCC 53993 6878886 YP_002221274.1 CDS Lferr_2883 NC_011206.1 2864434 2865795 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pol:Bpro_1188 protein of unknown function DUF224, cysteine-rich region; hypothetical protein 2864434..2865795 Acidithiobacillus ferrooxidans ATCC 53993 6878887 YP_002221275.1 CDS Lferr_2884 NC_011206.1 2865799 2867556 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: tbd:Tbd_1375 Ni-Fe hydrogenase large chain; nickel-dependent hydrogenase large subunit 2865799..2867556 Acidithiobacillus ferrooxidans ATCC 53993 6878888 YP_002221276.1 CDS Lferr_2885 NC_011206.1 2867625 2867966 D TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: aeh:Mlg_2019 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 2867625..2867966 Acidithiobacillus ferrooxidans ATCC 53993 6878889 YP_002221277.1 CDS Lferr_2886 NC_011206.1 2867963 2868766 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: aeh:Mlg_2018 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2867963..2868766 Acidithiobacillus ferrooxidans ATCC 53993 6878890 YP_002221278.1 CDS Lferr_2887 NC_011206.1 2868781 2869026 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: bvi:Bcep1808_5944 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 2868781..2869026 Acidithiobacillus ferrooxidans ATCC 53993 6878891 YP_002221279.1 CDS Lferr_2888 NC_011206.1 2869023 2870135 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rme:Rmet_1539 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2869023..2870135 Acidithiobacillus ferrooxidans ATCC 53993 6878892 YP_002221280.1 CDS Lferr_2889 NC_011206.1 2870325 2871209 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pae:PA5454 oxidoreductase Rmd; NAD-dependent epimerase/dehydratase 2870325..2871209 Acidithiobacillus ferrooxidans ATCC 53993 6878893 YP_002221281.1 CDS Lferr_2890 NC_011206.1 2871206 2872237 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: aae:aq_1082 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase 2871206..2872237 Acidithiobacillus ferrooxidans ATCC 53993 6878894 YP_002221282.1 CDS Lferr_2891 NC_011206.1 2872234 2873673 D KEGG: pap:PSPA7_3009 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2872234..2873673 Acidithiobacillus ferrooxidans ATCC 53993 6878895 YP_002221283.1 CDS Lferr_2892 NC_011206.1 2873705 2874253 R KEGG: eba:ebA2275 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2873705..2874253) Acidithiobacillus ferrooxidans ATCC 53993 6878896 YP_002221284.1 CDS Lferr_2893 NC_011206.1 2874250 2875134 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ajs:Ajs_0539 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(2874250..2875134) Acidithiobacillus ferrooxidans ATCC 53993 6878897 YP_002221285.1 CDS Lferr_2894 NC_011206.1 2875332 2876708 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mhu:Mhun_1633 general substrate transporter; general substrate transporter 2875332..2876708 Acidithiobacillus ferrooxidans ATCC 53993 6878898 YP_002221286.1 CDS Lferr_2895 NC_011206.1 2876722 2877432 R TIGRFAM: TonB family protein; KEGG: bbr:BB4396 hypothetical protein; TonB family protein complement(2876722..2877432) Acidithiobacillus ferrooxidans ATCC 53993 6878899 YP_002221287.1 CDS Lferr_2896 NC_011206.1 2877383 2878375 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(2877383..2878375) Acidithiobacillus ferrooxidans ATCC 53993 6878900 YP_002221288.1 CDS Lferr_2897 NC_011206.1 2878443 2879231 R PFAM: Uroporphyrinogen III synthase HEM4; KEGG: dar:Daro_3673 uroporphyrinogen III synthase HEM4; uroporphyrinogen-III synthase complement(2878443..2879231) Acidithiobacillus ferrooxidans ATCC 53993 6878901 YP_002221289.1 CDS hemC NC_011206.1 2879228 2880148 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(2879228..2880148) Acidithiobacillus ferrooxidans ATCC 53993 6878902 YP_002221290.1 CDS Lferr_2899 NC_011206.1 2880194 2880526 R KEGG: rba:RB11961 probable comEA-related protein; ComEA-like protein complement(2880194..2880526) Acidithiobacillus ferrooxidans ATCC 53993 6878903 YP_002221291.1 CDS Lferr_2900 NC_011206.1 2880564 2880959 R PFAM: histidine triad (HIT) protein; KEGG: fjo:Fjoh_1591 histidine triad (HIT) protein; histidine triad (HIT) protein complement(2880564..2880959) Acidithiobacillus ferrooxidans ATCC 53993 6878904 YP_002221292.1 CDS Lferr_2901 NC_011206.1 2880956 2882248 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(2880956..2882248) Acidithiobacillus ferrooxidans ATCC 53993 6878905 YP_002221293.1 CDS Lferr_2902 NC_011206.1 2882251 2882904 R KEGG: aeh:Mlg_2067 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(2882251..2882904) Acidithiobacillus ferrooxidans ATCC 53993 6878906 YP_002221294.1 CDS Lferr_2903 NC_011206.1 2882891 2883724 R PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mfa:Mfla_2662 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase complement(2882891..2883724) Acidithiobacillus ferrooxidans ATCC 53993 6878907 YP_002221295.1 CDS Lferr_2904 NC_011206.1 2884020 2884805 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dar:Daro_3863 short chain dehydrogenase; short chain dehydrogenase complement(2884020..2884805) Acidithiobacillus ferrooxidans ATCC 53993 6878908 Lferr_R0001 tRNA Lferr_R0001 NC_011206.1 85796 85871 D tRNA-Lys 85796..85871 Acidithiobacillus ferrooxidans ATCC 53993 6876036 Lferr_R0002 tRNA Lferr_R0002 NC_011206.1 304181 304256 D tRNA-Phe 304181..304256 Acidithiobacillus ferrooxidans ATCC 53993 6876268 Lferr_R0004 tRNA Lferr_R0004 NC_011206.1 453541 453625 D tRNA-Tyr 453541..453625 Acidithiobacillus ferrooxidans ATCC 53993 6876435 Lferr_R0005 tRNA Lferr_R0005 NC_011206.1 453683 453756 D tRNA-Gly 453683..453756 Acidithiobacillus ferrooxidans ATCC 53993 6876436 Lferr_R0006 tRNA Lferr_R0006 NC_011206.1 453765 453840 D tRNA-Thr 453765..453840 Acidithiobacillus ferrooxidans ATCC 53993 6876437 Lferr_R0007 tRNA Lferr_R0007 NC_011206.1 455129 455204 D tRNA-Trp 455129..455204 Acidithiobacillus ferrooxidans ATCC 53993 6876439 Lferr_R0008 tRNA Lferr_R0008 NC_011206.1 511528 511604 D tRNA-Met 511528..511604 Acidithiobacillus ferrooxidans ATCC 53993 6876509 Lferr_R0010 tRNA Lferr_R0010 NC_011206.1 513310 513386 D tRNA-Ile 513310..513386 Acidithiobacillus ferrooxidans ATCC 53993 6876511 Lferr_R0011 tRNA Lferr_R0011 NC_011206.1 513390 513465 D tRNA-Ala 513390..513465 Acidithiobacillus ferrooxidans ATCC 53993 6876512 Lferr_R0013 tRNA Lferr_R0013 NC_011206.1 693928 694003 D tRNA-Thr 693928..694003 Acidithiobacillus ferrooxidans ATCC 53993 6876694 Lferr_R0014 tRNA Lferr_R0014 NC_011206.1 696357 696432 R tRNA-Arg complement(696357..696432) Acidithiobacillus ferrooxidans ATCC 53993 6876699 Lferr_R0015 tRNA Lferr_R0015 NC_011206.1 766833 766925 D tRNA-Ser 766833..766925 Acidithiobacillus ferrooxidans ATCC 53993 6876770 Lferr_R0016 tRNA Lferr_R0016 NC_011206.1 944278 944354 R tRNA-Arg complement(944278..944354) Acidithiobacillus ferrooxidans ATCC 53993 6876936 Lferr_R0017 tRNA Lferr_R0017 NC_011206.1 955590 955664 D tRNA-Gly 955590..955664 Acidithiobacillus ferrooxidans ATCC 53993 6876947 Lferr_R0018 tRNA Lferr_R0018 NC_011206.1 955705 955778 D tRNA-Cys 955705..955778 Acidithiobacillus ferrooxidans ATCC 53993 6876948 Lferr_R0019 tRNA Lferr_R0019 NC_011206.1 980033 980108 R tRNA-Thr complement(980033..980108) Acidithiobacillus ferrooxidans ATCC 53993 6876982 Lferr_R0020 tRNA Lferr_R0020 NC_011206.1 1005114 1005189 D tRNA-Val 1005114..1005189 Acidithiobacillus ferrooxidans ATCC 53993 6877005 Lferr_R0021 tRNA Lferr_R0021 NC_011206.1 1005201 1005277 D tRNA-Asp 1005201..1005277 Acidithiobacillus ferrooxidans ATCC 53993 6877006 Lferr_R0022 tRNA Lferr_R0022 NC_011206.1 1083338 1083413 D tRNA-Ala 1083338..1083413 Acidithiobacillus ferrooxidans ATCC 53993 6877079 Lferr_R0024 tRNA Lferr_R0024 NC_011206.1 1233985 1234059 D tRNA-Val 1233985..1234059 Acidithiobacillus ferrooxidans ATCC 53993 6877244 Lferr_R0025 tRNA Lferr_R0025 NC_011206.1 1465630 1465705 D tRNA-Asn 1465630..1465705 Acidithiobacillus ferrooxidans ATCC 53993 6877479 Lferr_R0026 tRNA Lferr_R0026 NC_011206.1 1528068 1528154 R tRNA-Leu complement(1528068..1528154) Acidithiobacillus ferrooxidans ATCC 53993 6877540 Lferr_R0027 tRNA Lferr_R0027 NC_011206.1 1551894 1551984 D tRNA-Ser 1551894..1551984 Acidithiobacillus ferrooxidans ATCC 53993 6877567 Lferr_R0028 tRNA Lferr_R0028 NC_011206.1 1577530 1577614 R tRNA-Leu complement(1577530..1577614) Acidithiobacillus ferrooxidans ATCC 53993 6877595 Lferr_R0029 tRNA Lferr_R0029 NC_011206.1 1586613 1586688 R tRNA-Lys complement(1586613..1586688) Acidithiobacillus ferrooxidans ATCC 53993 6877602 Lferr_R0030 tRNA Lferr_R0030 NC_011206.1 1643906 1643982 R tRNA-Arg complement(1643906..1643982) Acidithiobacillus ferrooxidans ATCC 53993 6877662 Lferr_R0031 tRNA Lferr_R0031 NC_011206.1 1686254 1686344 R tRNA-Ser complement(1686254..1686344) Acidithiobacillus ferrooxidans ATCC 53993 6877695 Lferr_R0032 tRNA Lferr_R0032 NC_011206.1 1768007 1768082 D tRNA-Glu 1768007..1768082 Acidithiobacillus ferrooxidans ATCC 53993 6877769 Lferr_R0034 tRNA Lferr_R0034 NC_011206.1 1848940 1849024 D tRNA-Leu 1848940..1849024 Acidithiobacillus ferrooxidans ATCC 53993 6877852 Lferr_R0035 tRNA Lferr_R0035 NC_011206.1 1949119 1949205 R tRNA-Leu complement(1949119..1949205) Acidithiobacillus ferrooxidans ATCC 53993 6877941 Lferr_R0036 tRNA Lferr_R0036 NC_011206.1 1958293 1958369 D tRNA-Pro 1958293..1958369 Acidithiobacillus ferrooxidans ATCC 53993 6877951 Lferr_R0037 tRNA Lferr_R0037 NC_011206.1 1966260 1966336 R tRNA-Met complement(1966260..1966336) Acidithiobacillus ferrooxidans ATCC 53993 6877957 Lferr_R0038 tRNA Lferr_R0038 NC_011206.1 1984169 1984244 D tRNA-Ala 1984169..1984244 Acidithiobacillus ferrooxidans ATCC 53993 6877976 Lferr_R0039 tRNA Lferr_R0039 NC_011206.1 1992579 1992654 R tRNA-Glu complement(1992579..1992654) Acidithiobacillus ferrooxidans ATCC 53993 6877982 Lferr_R0040 tRNA Lferr_R0040 NC_011206.1 2002693 2002766 D tRNA-Gly 2002693..2002766 Acidithiobacillus ferrooxidans ATCC 53993 6877993 Lferr_R0041 tRNA Lferr_R0041 NC_011206.1 2209715 2209791 R tRNA-Pro complement(2209715..2209791) Acidithiobacillus ferrooxidans ATCC 53993 6878227 Lferr_R0042 tRNA Lferr_R0042 NC_011206.1 2217124 2217198 R tRNA-Val complement(2217124..2217198) Acidithiobacillus ferrooxidans ATCC 53993 6878236 Lferr_R0043 tRNA Lferr_R0043 NC_011206.1 2231672 2231756 R tRNA-Leu complement(2231672..2231756) Acidithiobacillus ferrooxidans ATCC 53993 6878251 Lferr_R0044 tRNA Lferr_R0044 NC_011206.1 2331012 2331088 R tRNA-Arg complement(2331012..2331088) Acidithiobacillus ferrooxidans ATCC 53993 6878351 Lferr_R0045 tRNA Lferr_R0045 NC_011206.1 2336651 2336724 D tRNA-Gln 2336651..2336724 Acidithiobacillus ferrooxidans ATCC 53993 6878358 Lferr_R0046 tRNA Lferr_R0046 NC_011206.1 2356075 2356149 D tRNA-Gln 2356075..2356149 Acidithiobacillus ferrooxidans ATCC 53993 6878381 Lferr_R0047 tRNA Lferr_R0047 NC_011206.1 2357208 2357283 D tRNA-His 2357208..2357283 Acidithiobacillus ferrooxidans ATCC 53993 6878383 Lferr_R0048 tRNA Lferr_R0048 NC_011206.1 2476837 2476913 R tRNA-Pro complement(2476837..2476913) Acidithiobacillus ferrooxidans ATCC 53993 6878515 Lferr_R0050 tRNA Lferr_R0050 NC_011206.1 2669429 2669504 R tRNA-Ala complement(2669429..2669504) Acidithiobacillus ferrooxidans ATCC 53993 6878687 Lferr_R0051 tRNA Lferr_R0051 NC_011206.1 2669508 2669584 R tRNA-Ile complement(2669508..2669584) Acidithiobacillus ferrooxidans ATCC 53993 6878688 Lferr_R0053 tRNA Lferr_R0053 NC_011206.1 2818968 2819044 R tRNA-Met complement(2818968..2819044) Acidithiobacillus ferrooxidans ATCC 53993 6878838 Lferr_R0009 rRNA Lferr_R0009 NC_011206.1 511806 513264 D 16S ribosomal RNA 511806..513264 Acidithiobacillus ferrooxidans ATCC 53993 6876510 Lferr_R0012 rRNA Lferr_R0012 NC_011206.1 513699 516601 D 23S ribosomal RNA 513699..516601 Acidithiobacillus ferrooxidans ATCC 53993 6876513 Lferr_R0054 rRNA Lferr_R0054 NC_011206.1 516689 516804 D 5S ribosomal RNA 516689..516804 Acidithiobacillus ferrooxidans ATCC 53993 6876514 Lferr_R0055 rRNA Lferr_R0055 NC_011206.1 2666090 2666205 R 5S ribosomal RNA complement(2666090..2666205) Acidithiobacillus ferrooxidans ATCC 53993 6878685 Lferr_R0049 rRNA Lferr_R0049 NC_011206.1 2666293 2669195 R 23S ribosomal RNA complement(2666293..2669195) Acidithiobacillus ferrooxidans ATCC 53993 6878686 Lferr_R0052 rRNA Lferr_R0052 NC_011206.1 2669630 2671088 R 16S ribosomal RNA complement(2669630..2671088) Acidithiobacillus ferrooxidans ATCC 53993 6878689