RSAT - Supported organisms

Genomes in the RSAT Prokaryotes server were recently re-installed. Genome names now follow the NCBI standard to easily identify assemblies, if you cannot find your genome please check this naming list to find the correct ID: Genome IDs list

RSAT instance: ifb-teaching

Organisms supported: 8

Group specificity: Teaching

ID taxid nb source last_update data taxonomy
Bacillus_subtilis_168_uid57675 224308 1 NCBI 2022-02-22.100800 data Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Drosophila_melanogaster 7227 2 NCBI 2022-03-05.062617 data Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Escherichia_coli_GCF_000005845.2_ASM584v2 511145 3 NCBI-Refseq 2022-03-02.012359 data Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Escherichia_coli_K_12_substr__MG1655_uid57779 511145 4 NCBI 2022-02-26.045817 data Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia
Homo_sapiens_GRCh37 9606 5 2022-03-05.065303 data Eukaryota;Opisthokonta;Metazoa;Eumetazoa;Bilateria;Deuterostomia;Chordata;Craniata;Vertebrata;Gnathostomata;Teleostomi;Euteleostomi;Sarcopterygii;Dipnotetrapodomorpha;Tetrapoda;Amniota;Mammalia;Theria;Eutheria;Euarchontoglires;Primates;Haplorrhini;Simiiformes;Catarrhini;Hominoidea;Hominidae;Homininae;Homo;Sapiens
Homo_sapiens_GRCh38 9606 6 ensembl 2022-03-05.065306 data Eukaryota;Opisthokonta;Metazoa;Eumetazoa;Bilateria;Deuterostomia;Chordata;Craniata;Vertebrata;Gnathostomata;Teleostomi;Euteleostomi;Sarcopterygii;Dipnotetrapodomorpha;Tetrapoda;Amniota;Mammalia;Theria;Eutheria;Boreoeutheria;Euarchontoglires;Primates;Haplorrhini;Simiiformes;Catarrhini;Hominoidea;Hominidae;Homininae;Homo;Sapiens
Mus_musculus_GRCm38 10090 7 ensembl 2022-03-05.093824 data Eukaryota;Opisthokonta;Metazoa;Eumetazoa;Bilateria;Deuterostomia;Chordata;Craniata;Vertebrata;Gnathostomata;Teleostomi;Euteleostomi;Sarcopterygii;Dipnotetrapodomorpha;Tetrapoda;Amniota;Mammalia;Theria;Eutheria;Boreoeutheria;Euarchontoglires;Glires;Rodentia;Sciurognathi;Muroidea;Muridae;Murinae;Mus;Musculus
Saccharomyces_cerevisiae 4932 8 NCBI 2022-03-03.064702 data Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces